AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene65112

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65112.t1 MTR_7g058710 78.629 496 69 4 1 471 1 484 0.0 769
MS.gene65112.t1 MTR_7g058700 64.449 481 55 5 24 471 531 928 0.0 577
MS.gene65112.t1 MTR_7g066570 56.939 490 175 8 4 468 6 484 1.04e-180 518
MS.gene65112.t1 MTR_7g012680 55.741 479 177 9 1 471 1 452 6.66e-172 491
MS.gene65112.t1 MTR_7g066260 53.144 493 171 12 1 464 1 462 2.85e-157 455
MS.gene65112.t1 MTR_7g066580 53.030 462 181 8 18 464 1 441 2.53e-151 438
MS.gene65112.t1 MTR_7g066340 50.304 493 176 9 1 464 1 453 2.60e-148 432
MS.gene65112.t1 MTR_7g066350 49.795 488 165 9 8 461 5 446 7.12e-146 425
MS.gene65112.t1 MTR_2g029400 50.417 480 133 7 2 454 4 405 1.31e-138 404
MS.gene65112.t1 MTR_1g041315 48.041 485 175 9 3 448 5 451 2.21e-137 404
MS.gene65112.t1 MTR_7g066290 47.870 493 168 11 1 464 1 433 4.67e-129 381
MS.gene65112.t1 MTR_1g014060 47.450 451 169 8 21 471 9 391 3.00e-128 377
MS.gene65112.t1 MTR_7g066430 43.487 499 238 10 12 470 4 498 1.17e-123 370
MS.gene65112.t1 MTR_7g066410 43.056 504 235 11 13 465 11 513 1.51e-120 362
MS.gene65112.t1 MTR_7g066410 29.130 230 130 6 12 215 284 506 2.10e-14 75.9
MS.gene65112.t1 MTR_7g066310 46.004 463 164 9 7 464 2 383 1.32e-117 351
MS.gene65112.t1 MTR_7g066360 46.341 492 189 13 2 464 4 449 1.03e-116 351
MS.gene65112.t1 MTR_7g066400 43.002 493 188 11 1 460 1 433 8.08e-116 348
MS.gene65112.t1 MTR_7g066680 58.194 299 86 4 200 461 39 335 8.17e-99 300
MS.gene65112.t1 MTR_7g063900 40.514 506 249 13 1 471 1 489 1.74e-95 297
MS.gene65112.t1 MTR_7g063660 39.000 500 245 13 7 471 4 478 6.44e-95 295
MS.gene65112.t1 MTR_7g062280 37.870 507 260 12 4 471 2 492 1.71e-94 294
MS.gene65112.t1 MTR_7g063840 37.374 495 265 12 1 471 1 474 2.58e-92 288
MS.gene65112.t1 MTR_7g062300 37.074 499 251 14 1 463 1 472 7.78e-92 287
MS.gene65112.t1 MTR_7g063820 38.866 494 266 9 4 471 2 485 1.05e-89 282
MS.gene65112.t1 MTR_7g063890 40.323 496 253 12 6 470 21 504 2.51e-87 276
MS.gene65112.t1 MTR_7g063890 26.695 236 141 9 236 455 20 239 2.32e-13 72.4
MS.gene65112.t1 MTR_7g063880 38.755 498 244 13 3 470 2 468 1.74e-85 270
MS.gene65112.t1 MTR_7g063920 36.179 492 235 8 3 471 2 437 4.31e-84 266
MS.gene65112.t1 MTR_7g066280 41.584 404 192 10 91 464 1 390 5.29e-82 259
MS.gene65112.t1 MTR_7g063830 36.420 486 237 11 4 465 2 439 1.57e-81 259
MS.gene65112.t1 MTR_4g019310 35.556 495 277 13 6 464 2 490 5.22e-80 257
MS.gene65112.t1 MTR_3g065200 37.832 452 225 11 10 450 1 407 4.55e-78 251
MS.gene65112.t1 MTR_3g007740 37.190 484 227 11 11 465 8 443 2.83e-75 243
MS.gene65112.t1 MTR_4g017410 33.706 537 242 19 1 470 1 490 1.79e-73 240
MS.gene65112.t1 MTR_4g017830 33.333 537 261 20 1 470 1 507 2.54e-72 238
MS.gene65112.t1 MTR_7g063670 35.124 484 248 9 13 471 16 458 4.29e-70 230
MS.gene65112.t1 MTR_4g017440 33.333 513 268 18 13 470 15 508 4.90e-70 231
MS.gene65112.t1 MTR_4g019340 33.673 490 248 14 13 452 39 501 4.33e-69 229
MS.gene65112.t1 MTR_4g019340 34.615 104 61 2 12 115 303 399 3.11e-11 65.9
MS.gene65112.t1 MTR_4g017610 33.333 486 260 12 15 461 16 476 5.60e-67 222
MS.gene65112.t1 MTR_7g066490 41.640 317 157 6 12 313 16 319 6.69e-67 220
MS.gene65112.t1 MTR_7g066490 50.725 69 34 0 392 460 335 403 3.82e-12 68.2
MS.gene65112.t1 MTR_7g066480 41.329 346 160 9 11 328 15 345 1.21e-65 218
MS.gene65112.t1 MTR_7g066480 47.297 74 39 0 392 465 349 422 1.19e-12 70.1
MS.gene65112.t1 MTR_4g017470 30.286 525 262 13 1 470 1 476 1.37e-59 203
MS.gene65112.t1 MTR_4g017550 30.579 484 240 18 42 462 21 471 6.41e-49 174
MS.gene65112.t1 MTR_4g017550 29.258 229 121 6 12 225 247 449 1.22e-12 70.1
MS.gene65112.t1 MTR_7g063720 35.371 229 130 2 243 471 23 233 1.21e-39 143
MS.gene65112.t1 MTR_7g063720 27.184 206 111 8 12 215 23 191 5.78e-13 68.9
MS.gene65112.t1 MTR_7g062270 42.045 176 90 5 13 185 11 177 8.32e-36 137
MS.gene65112.t1 MTR_2g067310 43.678 174 53 3 23 196 58 186 8.18e-31 119
MS.gene65112.t1 MTR_7g063850 33.478 230 144 3 243 470 66 288 8.24e-29 115
MS.gene65112.t1 MTR_7g100420 33.876 307 181 9 169 460 94 393 2.15e-27 114
MS.gene65112.t1 MTR_7g100420 59.322 59 20 1 13 67 40 98 9.95e-13 70.1
MS.gene65112.t1 MTR_7g066390 38.674 181 52 3 284 464 1 122 1.68e-25 102
MS.gene65112.t1 MTR_8g023240 23.651 482 290 15 13 455 38 480 3.85e-22 99.8
MS.gene65112.t1 MTR_1g115440 29.528 254 126 6 3 220 2 238 1.68e-20 90.9
MS.gene65112.t1 MTR_1g115440 28.755 233 151 7 233 454 1 229 4.30e-19 86.7
MS.gene65112.t1 MTR_0150s0010 31.967 244 135 6 1 220 1 237 8.86e-20 88.6
MS.gene65112.t1 MTR_0150s0010 30.660 212 128 6 256 454 23 228 3.00e-16 78.6
MS.gene65112.t1 MTR_8g445860 29.032 248 132 7 4 221 5 238 1.77e-19 87.8
MS.gene65112.t1 MTR_8g445860 26.695 236 147 7 232 452 2 226 2.82e-15 75.9
MS.gene65112.t1 MTR_4g019240 41.818 110 54 4 13 114 14 121 9.13e-18 81.6
MS.gene65112.t1 MTR_1g115450 39.773 88 48 1 9 96 4 86 2.55e-15 73.2
MS.gene65112.t1 MTR_1g115455 27.642 246 140 8 1 221 1 233 8.66e-15 74.3
MS.gene65112.t1 MTR_0150s0030 35.644 101 56 3 6 102 2 97 5.77e-14 71.2
MS.gene65112.t1 MTR_8g445920 37.363 91 52 1 4 94 2 87 1.83e-13 67.0
MS.gene65112.t1 MTR_8g044890 37.363 91 52 1 4 94 2 87 1.83e-13 67.0
MS.gene65112.t1 MTR_8g445910 36.634 101 55 3 6 102 2 97 3.82e-13 70.1
MS.gene65112.t1 MTR_8g044880 38.462 91 50 2 6 95 2 87 5.59e-13 69.7
MS.gene65112.t1 MTR_7g063690 68.750 48 15 0 13 60 13 60 1.25e-12 68.2
MS.gene65112.t1 MTR_7g063690 33.987 153 73 6 139 270 77 222 1.85e-12 67.4
MS.gene65112.t1 MTR_1g115470 37.895 95 52 2 12 104 6 95 4.61e-12 68.2
MS.gene65112.t1 MTR_7g063870 52.727 55 26 0 6 60 25 79 9.98e-12 65.5
MS.gene65112.t1 MTR_7g063760 44.595 74 40 1 399 471 1 74 1.91e-11 60.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene65112.t1 AT5G01120 32.919 483 282 12 13 460 10 485 2.05e-61 209
MS.gene65112.t1 AT5G43240 30.040 496 283 14 13 460 10 489 2.65e-55 192
MS.gene65112.t1 AT5G43240 30.040 496 283 14 13 460 10 489 2.65e-55 192
MS.gene65112.t1 AT5G43240 30.040 496 283 14 13 460 10 489 2.65e-55 192
MS.gene65112.t1 AT3G09140 29.264 516 292 13 1 465 1 494 1.01e-53 188
MS.gene65112.t1 AT5G01150 28.337 487 299 8 12 464 9 479 6.04e-52 183
MS.gene65112.t1 AT3G09140 28.493 544 288 15 1 465 1 522 1.15e-50 180
MS.gene65112.t1 AT5G01130 30.000 480 265 11 12 464 9 444 1.50e-48 173
MS.gene65112.t1 AT3G09110 31.975 319 184 6 12 305 9 319 3.79e-47 166
MS.gene65112.t1 AT5G01140 27.673 477 287 10 12 464 9 451 5.68e-47 169
MS.gene65112.t1 AT3G09120 32.381 315 179 8 11 297 5 313 6.34e-43 154
MS.gene65112.t1 AT5G37320 28.515 505 287 16 6 465 5 480 2.37e-37 143
MS.gene65112.t1 AT5G43240 25.806 341 196 11 162 460 20 345 9.50e-17 82.0

Find 90 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTCCAATTGGAATTATT+TGG 0.146766 7.1:+42785383 None:intergenic
ATTCCTGAACTCAGACTTTC+TGG 0.157859 7.1:+42786049 None:intergenic
CCTCCCATTGCTGCACAATT+TGG 0.190873 7.1:-42785415 MS.gene65112:CDS
AACATTGAAGCTGTGAAATT+TGG 0.238206 7.1:-42786349 MS.gene65112:CDS
CTCCCATTGCTGCACAATTT+GGG 0.242831 7.1:-42785414 MS.gene65112:CDS
AGCACTTCGTCTGTGGGAAT+TGG 0.291346 7.1:-42786174 MS.gene65112:CDS
TATGTGATGCCTACTGTTTA+TGG 0.309171 7.1:-42785980 MS.gene65112:CDS
ATCTATTCGTACATTAATAT+TGG 0.327952 7.1:-42785349 MS.gene65112:CDS
CCAACTCATAACGATCATTA+AGG 0.344126 7.1:-42784900 MS.gene65112:CDS
ATCTTGATGAACAATATCTA+TGG 0.360687 7.1:-42786294 MS.gene65112:CDS
CAAAGTTACATTGAGAGTTA+TGG 0.373530 7.1:-42786491 MS.gene65112:CDS
GCACTTCGTCTGTGGGAATT+GGG 0.386412 7.1:-42786173 MS.gene65112:CDS
CCACAGACGAAGTGCTGAAT+AGG 0.390073 7.1:+42786181 None:intergenic
TTCAGGAATCGGGTTTGTTA+AGG 0.391995 7.1:-42786035 MS.gene65112:CDS
GGTGAGGAAGCTACTCCAAT+TGG 0.395198 7.1:+42785373 None:intergenic
AGCTTCTTAACATTGCCTTT+AGG 0.397252 7.1:-42786403 MS.gene65112:CDS
GTCTTTGTATTCTAAAAGCT+TGG 0.408918 7.1:-42784958 MS.gene65112:CDS
AGACTTTCTGGTTGTGGCGG+TGG 0.425983 7.1:+42786061 None:intergenic
AATGTTCCAATATGTAAGAT+TGG 0.430435 7.1:-42785700 MS.gene65112:CDS
GACAACCAAATAATTCCAAT+TGG 0.437125 7.1:-42785388 MS.gene65112:CDS
TCTAAATGATGTGGAAGAAA+AGG 0.446563 7.1:-42785101 MS.gene65112:CDS
GAAGAAAAGGTTGTAACAAT+TGG 0.446749 7.1:-42785088 MS.gene65112:CDS
AGATATTCTGAAGTTGTCAT+TGG 0.448909 7.1:-42785779 MS.gene65112:CDS
AGATATCTGCCTACCTCCTT+CGG 0.449903 7.1:+42785666 None:intergenic
AAAGTCTGTACTTCTAACTT+TGG 0.451696 7.1:-42785269 MS.gene65112:CDS
GATTCCTAAATAAGCTCAAA+AGG 0.452463 7.1:+42786125 None:intergenic
TAAAGATGAAGTCCGTCAAA+GGG 0.464895 7.1:+42785746 None:intergenic
CATATGCAACACTCCTCCTA+AGG 0.473041 7.1:+42785549 None:intergenic
AGATGTGGAGAATTTGCAAA+AGG 0.473308 7.1:-42785214 MS.gene65112:CDS
TCAACTTCGGCTAAGTCAAA+TGG 0.474517 7.1:-42784929 MS.gene65112:CDS
GAAAGTCTGAGTTCAGGAAT+CGG 0.478252 7.1:-42786046 MS.gene65112:CDS
GAACTCAGACTTTCTGGTTG+TGG 0.478625 7.1:+42786055 None:intergenic
GGTCTCAAAGACCCCTTTGA+CGG 0.478695 7.1:-42785758 MS.gene65112:CDS
TAAGCTTCCATGGAATTCCT+TGG 0.480256 7.1:+42786241 None:intergenic
AGCCCAAATTGTGCAGCAAT+GGG 0.485579 7.1:+42785412 None:intergenic
AAAGTCTGAGTTCAGGAATC+GGG 0.490673 7.1:-42786045 MS.gene65112:CDS
ATATTAATGTACGAATAGAT+AGG 0.490863 7.1:+42785352 None:intergenic
CCTTAATGATCGTTATGAGT+TGG 0.492447 7.1:+42784900 None:intergenic
GTGTTTGAAGCAGATAGCTT+AGG 0.493051 7.1:+42785241 None:intergenic
AAGCCCAAATTGTGCAGCAA+TGG 0.495203 7.1:+42785411 None:intergenic
GGAGTGTTGCATATGCTTGA+AGG 0.498562 7.1:-42785541 MS.gene65112:CDS
GGTTGTAACAATTGGTCAGC+AGG 0.499241 7.1:-42785080 MS.gene65112:CDS
CAACCAGAAAGTCTGAGTTC+AGG 0.501237 7.1:-42786052 MS.gene65112:CDS
CAGTTATACAACTACTTCAC+AGG 0.503378 7.1:-42785955 MS.gene65112:CDS
AGCTTCAATGTTCGACTCCT+CGG 0.505824 7.1:+42786360 None:intergenic
CTTCTGACAATAAGCTTCCA+TGG 0.507424 7.1:+42786231 None:intergenic
GTAGCGAGAAGAAAATCAAC+CGG 0.509793 7.1:-42785637 MS.gene65112:CDS
GTGGCGGTGGAGATAATACT+TGG 0.526149 7.1:+42786074 None:intergenic
TTTCTAACTCTCCCCTTAGG+AGG 0.527656 7.1:-42785562 MS.gene65112:CDS
GAGTTATGGTGGACAAAGAA+AGG 0.528542 7.1:-42786477 MS.gene65112:CDS
CCTATTCAGCACTTCGTCTG+TGG 0.530948 7.1:-42786181 MS.gene65112:CDS
TTCAGCAAACAAAATCTCTC+CGG 0.536072 7.1:+42785618 None:intergenic
TTAAAGATGAAGTCCGTCAA+AGG 0.538489 7.1:+42785745 None:intergenic
AGGAATCAATTGTGCAGTTG+TGG 0.541823 7.1:-42786109 MS.gene65112:CDS
TTTGTATGCTGAGGCAGGGA+AGG 0.547892 7.1:-42786446 MS.gene65112:CDS
AGTCTTGCAATAGTACCTAA+AGG 0.548353 7.1:+42786388 None:intergenic
ATATGCAACACTCCTCCTAA+GGG 0.551461 7.1:+42785550 None:intergenic
AAATGTTCCTCTAAATGATG+TGG 0.556765 7.1:-42785110 MS.gene65112:CDS
GAATTGGGATTGTGTAAGAA+AGG 0.559576 7.1:-42786158 MS.gene65112:CDS
TAAATGTGATATAGCAGTGA+AGG 0.560380 7.1:+42785141 None:intergenic
ATACATGGTGACAGTTGACT+TGG 0.564692 7.1:-42785182 MS.gene65112:CDS
AAAAGGGCCATCAGTATACA+TGG 0.572178 7.1:-42785197 MS.gene65112:CDS
GATGTGGAGAATTTGCAAAA+GGG 0.572617 7.1:-42785213 MS.gene65112:CDS
CTCAGACTTTCTGGTTGTGG+CGG 0.574203 7.1:+42786058 None:intergenic
AAGTTAATAAAATCATCTCC+TGG 0.574688 7.1:+42785595 None:intergenic
GATTGTGTAAGAAAGGAAAG+TGG 0.574963 7.1:-42786151 MS.gene65112:CDS
CTATTCAGCACTTCGTCTGT+GGG 0.575094 7.1:-42786180 MS.gene65112:CDS
ACTCAAGCCAAGGAATTCCA+TGG 0.587581 7.1:-42786248 MS.gene65112:CDS
CCAAATTGTGCAGCAATGGG+AGG 0.591776 7.1:+42785415 None:intergenic
ATTGTGTAAGAAAGGAAAGT+GGG 0.596290 7.1:-42786150 MS.gene65112:CDS
TATTGCAAGACTAGTGGCCG+AGG 0.599051 7.1:-42786377 MS.gene65112:CDS
CAAATTGTGCAGCAATGGGA+GGG 0.599723 7.1:+42785416 None:intergenic
TTTCGAGATTAAATAACTGT+CGG 0.602240 7.1:+42785462 None:intergenic
AGCTTGGATGAACTCAACTT+CGG 0.604640 7.1:-42784942 MS.gene65112:CDS
TCTATGGACTCATACTTGCA+AGG 0.605084 7.1:-42786278 MS.gene65112:CDS
AGTTACATTGAGAGTTATGG+TGG 0.605938 7.1:-42786488 MS.gene65112:CDS
AGGTACTATTGCAAGACTAG+TGG 0.614356 7.1:-42786383 MS.gene65112:CDS
AGGAAATGCTACTCAAGCCA+AGG 0.617283 7.1:-42786258 MS.gene65112:CDS
ACTGTCACCATGTATACTGA+TGG 0.619928 7.1:+42785190 None:intergenic
AAGCAACATCCGAAGGAGGT+AGG 0.627417 7.1:-42785675 MS.gene65112:CDS
ATAACTGTTCCATAAACAGT+AGG 0.645712 7.1:+42785971 None:intergenic
TAGCTCACTGTATCAGAGTG+TGG 0.646397 7.1:-42786320 MS.gene65112:CDS
GCTTCAAACACATCAAGATG+TGG 0.651463 7.1:-42785229 MS.gene65112:CDS
GGAAAAGCAACATCCGAAGG+AGG 0.655356 7.1:-42785679 MS.gene65112:CDS
ATTGGAAAAGCAACATCCGA+AGG 0.656213 7.1:-42785682 MS.gene65112:CDS
TGTAACAATTGGTCAGCAGG+AGG 0.662225 7.1:-42785077 MS.gene65112:intron
ATAGCAGTGAAGGATGACAC+TGG 0.669959 7.1:+42785151 None:intergenic
AATGTACGAATAGATAGGTG+AGG 0.670088 7.1:+42785357 None:intergenic
AAAGATGAAGTCCGTCAAAG+GGG 0.671822 7.1:+42785747 None:intergenic
TATGCAACACTCCTCCTAAG+GGG 0.688986 7.1:+42785551 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATTTTATTACTTTTAC+TGG - chr7.1:42785606-42785625 MS.gene65112:CDS 10.0%
!! ATATTAATGTACGAATAGAT+AGG + chr7.1:42786063-42786082 None:intergenic 20.0%
!! ATCTATTCGTACATTAATAT+TGG - chr7.1:42786063-42786082 MS.gene65112:CDS 20.0%
! AAGTTAATAAAATCATCTCC+TGG + chr7.1:42785820-42785839 None:intergenic 25.0%
! AATGTTCCAATATGTAAGAT+TGG - chr7.1:42785712-42785731 MS.gene65112:CDS 25.0%
! ATCTTGATGAACAATATCTA+TGG - chr7.1:42785118-42785137 MS.gene65112:CDS 25.0%
! TAAGCCATTTAAAAGATTGT+TGG - chr7.1:42786358-42786377 MS.gene65112:CDS 25.0%
! TTTCGAGATTAAATAACTGT+CGG + chr7.1:42785953-42785972 None:intergenic 25.0%
!! AACACCAACAATCTTTTAAA+TGG + chr7.1:42786365-42786384 None:intergenic 25.0%
AAAGTCTGTACTTCTAACTT+TGG - chr7.1:42786143-42786162 MS.gene65112:CDS 30.0%
AAATGTTCCTCTAAATGATG+TGG - chr7.1:42786302-42786321 MS.gene65112:CDS 30.0%
AACATTGAAGCTGTGAAATT+TGG - chr7.1:42785063-42785082 MS.gene65112:intron 30.0%
ATAACTGTTCCATAAACAGT+AGG + chr7.1:42785444-42785463 None:intergenic 30.0%
ATTGTGTAAGAAAGGAAAGT+GGG - chr7.1:42785262-42785281 MS.gene65112:CDS 30.0%
CAAAGTTACATTGAGAGTTA+TGG - chr7.1:42784921-42784940 MS.gene65112:CDS 30.0%
CTACTCCAATTGGAATTATT+TGG + chr7.1:42786032-42786051 None:intergenic 30.0%
GAAGAAAAGGTTGTAACAAT+TGG - chr7.1:42786324-42786343 MS.gene65112:CDS 30.0%
GACAACCAAATAATTCCAAT+TGG - chr7.1:42786024-42786043 MS.gene65112:CDS 30.0%
GATTCCTAAATAAGCTCAAA+AGG + chr7.1:42785290-42785309 None:intergenic 30.0%
TAAATGTGATATAGCAGTGA+AGG + chr7.1:42786274-42786293 None:intergenic 30.0%
TCTAAATGATGTGGAAGAAA+AGG - chr7.1:42786311-42786330 MS.gene65112:CDS 30.0%
! GCTTTTCCAATCTTACATAT+TGG + chr7.1:42785721-42785740 None:intergenic 30.0%
! GTCTTTGTATTCTAAAAGCT+TGG - chr7.1:42786454-42786473 MS.gene65112:CDS 30.0%
! TTTTCTTCCACATCATTTAG+AGG + chr7.1:42786312-42786331 None:intergenic 30.0%
!! AGATATTCTGAAGTTGTCAT+TGG - chr7.1:42785633-42785652 MS.gene65112:CDS 30.0%
AATGTACGAATAGATAGGTG+AGG + chr7.1:42786058-42786077 None:intergenic 35.0%
AGATGTGGAGAATTTGCAAA+AGG - chr7.1:42786198-42786217 MS.gene65112:CDS 35.0%
AGCTTCTTAACATTGCCTTT+AGG - chr7.1:42785009-42785028 MS.gene65112:intron 35.0%
AGTCTTGCAATAGTACCTAA+AGG + chr7.1:42785027-42785046 None:intergenic 35.0%
AGTTACATTGAGAGTTATGG+TGG - chr7.1:42784924-42784943 MS.gene65112:CDS 35.0%
CAGTTATACAACTACTTCAC+AGG - chr7.1:42785457-42785476 MS.gene65112:CDS 35.0%
CCAACTCATAACGATCATTA+AGG - chr7.1:42786512-42786531 MS.gene65112:CDS 35.0%
CCTTAATGATCGTTATGAGT+TGG + chr7.1:42786515-42786534 None:intergenic 35.0%
GAATTGGGATTGTGTAAGAA+AGG - chr7.1:42785254-42785273 MS.gene65112:CDS 35.0%
GATGTGGAGAATTTGCAAAA+GGG - chr7.1:42786199-42786218 MS.gene65112:CDS 35.0%
GATTGTGTAAGAAAGGAAAG+TGG - chr7.1:42785261-42785280 MS.gene65112:CDS 35.0%
TAAAGATGAAGTCCGTCAAA+GGG + chr7.1:42785669-42785688 None:intergenic 35.0%
TATGTGATGCCTACTGTTTA+TGG - chr7.1:42785432-42785451 MS.gene65112:CDS 35.0%
TGTTGATATCAGCAAGAAAG+AGG - chr7.1:42785518-42785537 MS.gene65112:CDS 35.0%
TTAAAGATGAAGTCCGTCAA+AGG + chr7.1:42785670-42785689 None:intergenic 35.0%
TTCAGCAAACAAAATCTCTC+CGG + chr7.1:42785797-42785816 None:intergenic 35.0%
! GGAACCTTTTGAGCTTATTT+AGG - chr7.1:42785283-42785302 MS.gene65112:CDS 35.0%
! TTGTTTGCTAACATACTGCA+GGG - chr7.1:42786432-42786451 MS.gene65112:CDS 35.0%
! TTTGTTTGCTAACATACTGC+AGG - chr7.1:42786431-42786450 MS.gene65112:CDS 35.0%
!! GAACAAAGTTTTGTATGCTG+AGG - chr7.1:42784957-42784976 MS.gene65112:CDS 35.0%
AAAAGGGCCATCAGTATACA+TGG - chr7.1:42786215-42786234 MS.gene65112:CDS 40.0%
AAAGATGAAGTCCGTCAAAG+GGG + chr7.1:42785668-42785687 None:intergenic 40.0%
AAAGTCTGAGTTCAGGAATC+GGG - chr7.1:42785367-42785386 MS.gene65112:CDS 40.0%
ACTGTCACCATGTATACTGA+TGG + chr7.1:42786225-42786244 None:intergenic 40.0%
AGCTTGGATGAACTCAACTT+CGG - chr7.1:42786470-42786489 MS.gene65112:CDS 40.0%
AGGAATCAATTGTGCAGTTG+TGG - chr7.1:42785303-42785322 MS.gene65112:CDS 40.0%
AGGTACTATTGCAAGACTAG+TGG - chr7.1:42785029-42785048 MS.gene65112:intron 40.0%
ATACATGGTGACAGTTGACT+TGG - chr7.1:42786230-42786249 MS.gene65112:CDS 40.0%
ATATGCAACACTCCTCCTAA+GGG + chr7.1:42785865-42785884 None:intergenic 40.0%
ATTCCTGAACTCAGACTTTC+TGG + chr7.1:42785366-42785385 None:intergenic 40.0%
ATTGGAAAAGCAACATCCGA+AGG - chr7.1:42785730-42785749 MS.gene65112:CDS 40.0%
CTTCTGACAATAAGCTTCCA+TGG + chr7.1:42785184-42785203 None:intergenic 40.0%
GAAAGTCTGAGTTCAGGAAT+CGG - chr7.1:42785366-42785385 MS.gene65112:CDS 40.0%
GCTTCAAACACATCAAGATG+TGG - chr7.1:42786183-42786202 MS.gene65112:CDS 40.0%
GTAGCGAGAAGAAAATCAAC+CGG - chr7.1:42785775-42785794 MS.gene65112:CDS 40.0%
TAAGCTTCCATGGAATTCCT+TGG + chr7.1:42785174-42785193 None:intergenic 40.0%
TCAACTTCGGCTAAGTCAAA+TGG - chr7.1:42786483-42786502 MS.gene65112:CDS 40.0%
TCTATGGACTCATACTTGCA+AGG - chr7.1:42785134-42785153 MS.gene65112:CDS 40.0%
! AGTTTTCTAACTCTCCCCTT+AGG - chr7.1:42785847-42785866 MS.gene65112:intron 40.0%
! GTGTTTGAAGCAGATAGCTT+AGG + chr7.1:42786174-42786193 None:intergenic 40.0%
!! AAAGTTTTGTATGCTGAGGC+AGG - chr7.1:42784961-42784980 MS.gene65112:CDS 40.0%
!! AAGTTTTGTATGCTGAGGCA+GGG - chr7.1:42784962-42784981 MS.gene65112:CDS 40.0%
!! AGAAGTACAGACTTTTCAGC+AGG + chr7.1:42786138-42786157 None:intergenic 40.0%
!! GAGATTTTGTTTGCTGAACC+AGG - chr7.1:42785799-42785818 MS.gene65112:intron 40.0%
!! GAGTTATGGTGGACAAAGAA+AGG - chr7.1:42784935-42784954 MS.gene65112:CDS 40.0%
!! TTCAGGAATCGGGTTTGTTA+AGG - chr7.1:42785377-42785396 MS.gene65112:CDS 40.0%
AAGCCCAAATTGTGCAGCAA+TGG + chr7.1:42786004-42786023 None:intergenic 45.0%
ACTCAAGCCAAGGAATTCCA+TGG - chr7.1:42785164-42785183 MS.gene65112:CDS 45.0%
AGATATCTGCCTACCTCCTT+CGG + chr7.1:42785749-42785768 None:intergenic 45.0%
AGCCCAAATTGTGCAGCAAT+GGG + chr7.1:42786003-42786022 None:intergenic 45.0%
AGCTTCAATGTTCGACTCCT+CGG + chr7.1:42785055-42785074 None:intergenic 45.0%
AGGAAATGCTACTCAAGCCA+AGG - chr7.1:42785154-42785173 MS.gene65112:CDS 45.0%
AGGCTTGATATCTGTGACGT+TGG - chr7.1:42785477-42785496 MS.gene65112:CDS 45.0%
ATAGCAGTGAAGGATGACAC+TGG + chr7.1:42786264-42786283 None:intergenic 45.0%
CAAATTGTGCAGCAATGGGA+GGG + chr7.1:42785999-42786018 None:intergenic 45.0%
CAACCAGAAAGTCTGAGTTC+AGG - chr7.1:42785360-42785379 MS.gene65112:CDS 45.0%
CATATGCAACACTCCTCCTA+AGG + chr7.1:42785866-42785885 None:intergenic 45.0%
CTATTCAGCACTTCGTCTGT+GGG - chr7.1:42785232-42785251 MS.gene65112:CDS 45.0%
CTCCCATTGCTGCACAATTT+GGG - chr7.1:42785998-42786017 MS.gene65112:CDS 45.0%
GGTTGTAACAATTGGTCAGC+AGG - chr7.1:42786332-42786351 MS.gene65112:CDS 45.0%
TAGCTCACTGTATCAGAGTG+TGG - chr7.1:42785092-42785111 MS.gene65112:CDS 45.0%
TATGCAACACTCCTCCTAAG+GGG + chr7.1:42785864-42785883 None:intergenic 45.0%
TGTAACAATTGGTCAGCAGG+AGG - chr7.1:42786335-42786354 MS.gene65112:CDS 45.0%
TTTCTAACTCTCCCCTTAGG+AGG - chr7.1:42785850-42785869 MS.gene65112:intron 45.0%
!! GAACTCAGACTTTCTGGTTG+TGG + chr7.1:42785360-42785379 None:intergenic 45.0%
!! GGAGTGTTGCATATGCTTGA+AGG - chr7.1:42785871-42785890 MS.gene65112:intron 45.0%
AAGCAACATCCGAAGGAGGT+AGG - chr7.1:42785737-42785756 MS.gene65112:CDS 50.0%
AGCACTTCGTCTGTGGGAAT+TGG - chr7.1:42785238-42785257 MS.gene65112:CDS 50.0%
CCAAATTGTGCAGCAATGGG+AGG + chr7.1:42786000-42786019 None:intergenic 50.0%
CCTATTCAGCACTTCGTCTG+TGG - chr7.1:42785231-42785250 MS.gene65112:CDS 50.0%
CCTCCCATTGCTGCACAATT+TGG - chr7.1:42785997-42786016 MS.gene65112:CDS 50.0%
CTGTGACGTTGGCGCTATTA+CGG - chr7.1:42785488-42785507 MS.gene65112:CDS 50.0%
GCACTTCGTCTGTGGGAATT+GGG - chr7.1:42785239-42785258 MS.gene65112:CDS 50.0%
GGAAAAGCAACATCCGAAGG+AGG - chr7.1:42785733-42785752 MS.gene65112:CDS 50.0%
GGTCTCAAAGACCCCTTTGA+CGG - chr7.1:42785654-42785673 MS.gene65112:CDS 50.0%
GGTGAGGAAGCTACTCCAAT+TGG + chr7.1:42786042-42786061 None:intergenic 50.0%
GTGGCGGTGGAGATAATACT+TGG + chr7.1:42785341-42785360 None:intergenic 50.0%
TATTGCAAGACTAGTGGCCG+AGG - chr7.1:42785035-42785054 MS.gene65112:intron 50.0%
TTTGTATGCTGAGGCAGGGA+AGG - chr7.1:42784966-42784985 MS.gene65112:intron 50.0%
!! CCACAGACGAAGTGCTGAAT+AGG + chr7.1:42785234-42785253 None:intergenic 50.0%
!! CTCAGACTTTCTGGTTGTGG+CGG + chr7.1:42785357-42785376 None:intergenic 50.0%
!! AGACTTTCTGGTTGTGGCGG+TGG + chr7.1:42785354-42785373 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 42784889 42786545 42784889 ID=MS.gene65112
chr7.1 mRNA 42784889 42786545 42784889 ID=MS.gene65112.t1;Parent=MS.gene65112
chr7.1 exon 42785945 42786545 42785945 ID=MS.gene65112.t1.exon1;Parent=MS.gene65112.t1
chr7.1 CDS 42785945 42786545 42785945 ID=cds.MS.gene65112.t1;Parent=MS.gene65112.t1
chr7.1 exon 42785078 42785799 42785078 ID=MS.gene65112.t1.exon2;Parent=MS.gene65112.t1
chr7.1 CDS 42785078 42785799 42785078 ID=cds.MS.gene65112.t1;Parent=MS.gene65112.t1
chr7.1 exon 42784889 42784981 42784889 ID=MS.gene65112.t1.exon3;Parent=MS.gene65112.t1
chr7.1 CDS 42784889 42784981 42784889 ID=cds.MS.gene65112.t1;Parent=MS.gene65112.t1
Gene Sequence

>MS.gene65112

ATGGCAGCTAGCAATGCAACTAAATCAGTTGACAAAGTTACATTGAGAGTTATGGTGGACAAAGAAAGGAACAAAGTTTTGTATGCTGAGGCAGGGAAGGATTTTGTTGATGCTCTCTTCAGCTTCTTAACATTGCCTTTAGGTACTATTGCAAGACTAGTGGCCGAGGAGTCGAACATTGAAGCTGTGAAATTTGGCAGCATTAGCTCACTGTATCAGAGTGTGGCAAATCTTGATGAACAATATCTATGGACTCATACTTGCAAGGAAATGCTACTCAAGCCAAGGAATTCCATGGAAGCTTATTGTCAGAAGATGAAACTGAATATCGACGACACAGAACCTATTCAGCACTTCGTCTGTGGGAATTGGGATTGTGTAAGAAAGGAAAGTGGGAACCTTTTGAGCTTATTTAGGAATCAATTGTGCAGTTGTGGAAGAGTAATGAACCAAGTATTATCTCCACCGCCACAACCAGAAAGTCTGAGTTCAGGAATCGGGTTTGTTAAGGAAACTGCTGCATTTATTATTTCTGACGATCTATATGTGATGCCTACTGTTTATGGAACAGTTATACAACTACTTCACAGGCTTGATATCTGTGACGTTGGCGCTATTACGGAACAAACTGTTGATATCAGCAAGAAAGAGGCATGCTTTCTTATGCAACTCTCATCTTAACTATATTATATGTGCAATTGACTATTTGTTTTCTCATTAAATTTTATTACTTTTACTGGTAATAGATATTCTGAAGTTGTCATTGGTCTCAAAGACCCCTTTGACGGACTTCATCTTTAAAAAGAAATATTCTGAAGCTGTCAATGTTCCAATATGTAAGATTGGAAAAGCAACATCCGAAGGAGGTAGGCAGATATCTGTGAAAGTAGCGAGAAGAAAATCAACCGGAGAGATTTTGTTTGCTGAACCAGGAGATGATTTTATTAACTTTATTTTCAGTTTTCTAACTCTCCCCTTAGGAGGAGTGTTGCATATGCTTGAAGGTTTCTCTTCTCTAAACTGCATCGATAATTTATACAAAAGCGTGACTGAGTTGAGTACCGACAGTTATTTAATCTCGAAACATCTTAAAGAGAAGCTAATTAGCCCTCCCATTGCTGCACAATTTGGGCTTGACAACCAAATAATTCCAATTGGAGTAGCTTCCTCACCTATCTATTCGTACATTAATATTGGTCAGTATACTCGCGCACTAACTGCTTCATGCATTTATAATGTCTTTGATCCTGCTGAAAAGTCTGTACTTCTAACTTTGGTTGATCCTAAGCTATCTGCTTCAAACACATCAAGATGTGGAGAATTTGCAAAAGGGCCATCAGTATACATGGTGACAGTTGACTTGGTTATTACTCCAGTGTCATCCTTCACTGCTATATCACATTTAAATAGTTCAAATGTTCCTCTAAATGATGTGGAAGAAAAGGTTGTAACAATTGGTCAGCAGGAGGTAAGCCATTTAAAAGATTGTTGGTGTTGTCATTCATCGCAAAATATTTTCATTTGCATGCATTATTACAATAATTTGTTTGCTAACATACTGCAGGGTCTTTGTATTCTAAAAGCTTGGATGAACTCAACTTCGGCTAAGTCAAATGGACTCAACCAACTCATAACGATCATTAAGGACGAGAAATGA
Protein sequence

>MS.gene65112.t1

MAASNATKSVDKVTLRVMVDKERNKVLYAEAGKDFVDALFSFLTLPLGTIARLVAEESNIEAVKFGSISSLYQSVANLDEQYLWTHTCKEMLLKPRNSMEAYCQKMKLNIDDTEPIQHFVCGNWDCVRKESGNLLSLFRNQLCSCGRVMNQVLSPPPQPESLSSGIGFVKETAAFIISDDLYVMPTVYGTVIQLLHRLDIYILKLSLVSKTPLTDFIFKKKYSEAVNVPICKIGKATSEGGRQISVKVARRKSTGEILFAEPGDDFINFIFSFLTLPLGGVLHMLEGFSSLNCIDNLYKSVTELSTDSYLISKHLKEKLISPPIAAQFGLDNQIIPIGVASSPIYSYINIGQYTRALTASCIYNVFDPAEKSVLLTLVDPKLSASNTSRCGEFAKGPSVYMVTVDLVITPVSSFTAISHLNSSNVPLNDVEEKVVTIGQQEGLCILKAWMNSTSAKSNGLNQLITIIKDEK