AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46086

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46086.t1 MTR_7g063890 93.849 504 31 0 1 504 1 504 0.0 919
MS.gene46086.t1 MTR_7g063900 73.006 489 129 3 19 505 2 489 0.0 690
MS.gene46086.t1 MTR_7g063840 56.327 490 195 10 19 505 1 474 3.06e-170 489
MS.gene46086.t1 MTR_7g062280 53.213 498 203 9 25 505 8 492 5.46e-163 471
MS.gene46086.t1 MTR_7g063660 55.165 484 202 9 25 505 7 478 4.16e-162 468
MS.gene46086.t1 MTR_7g062300 54.167 480 196 10 25 497 10 472 2.60e-159 461
MS.gene46086.t1 MTR_7g063880 54.639 485 188 11 24 502 8 466 3.59e-159 461
MS.gene46086.t1 MTR_7g063820 56.627 498 179 14 25 505 8 485 6.57e-156 453
MS.gene46086.t1 MTR_7g063830 52.049 488 177 11 19 499 2 439 6.45e-150 436
MS.gene46086.t1 MTR_7g063920 52.361 487 172 9 23 505 7 437 1.88e-149 434
MS.gene46086.t1 MTR_3g007740 49.290 493 188 12 19 499 1 443 8.99e-128 379
MS.gene46086.t1 MTR_7g063670 46.450 493 205 12 25 505 13 458 2.24e-118 356
MS.gene46086.t1 MTR_7g066570 42.656 497 240 12 26 502 13 484 4.57e-111 341
MS.gene46086.t1 MTR_7g058710 39.370 508 258 11 20 505 5 484 2.34e-103 318
MS.gene46086.t1 MTR_7g066260 42.041 490 226 14 26 498 14 462 1.82e-100 311
MS.gene46086.t1 MTR_7g066260 24.895 237 160 6 263 492 10 235 3.40e-12 68.9
MS.gene46086.t1 MTR_7g012680 40.194 515 235 15 1 505 1 452 1.70e-94 294
MS.gene46086.t1 MTR_7g066340 38.821 492 233 14 26 498 11 453 2.75e-92 289
MS.gene46086.t1 MTR_3g065200 41.901 463 208 13 27 485 3 408 6.08e-92 288
MS.gene46086.t1 MTR_7g066350 38.259 494 244 10 13 494 1 445 9.21e-91 285
MS.gene46086.t1 MTR_7g066350 27.016 248 149 8 268 501 9 238 2.22e-12 69.3
MS.gene46086.t1 MTR_7g066410 37.160 514 276 10 25 499 8 513 2.34e-89 283
MS.gene46086.t1 MTR_7g066410 39.130 92 51 1 261 347 3 94 2.28e-12 69.7
MS.gene46086.t1 MTR_7g066430 39.059 489 274 11 27 498 4 485 8.29e-89 281
MS.gene46086.t1 MTR_7g066430 26.180 233 153 6 23 242 253 479 5.32e-15 77.8
MS.gene46086.t1 MTR_7g066290 38.571 490 214 11 26 498 14 433 1.95e-83 265
MS.gene46086.t1 MTR_1g041315 36.157 484 237 11 26 482 13 451 1.17e-81 262
MS.gene46086.t1 MTR_4g019310 35.644 505 282 14 21 498 2 490 6.49e-81 261
MS.gene46086.t1 MTR_7g066580 37.552 482 244 14 33 498 1 441 6.32e-80 256
MS.gene46086.t1 MTR_7g066580 26.316 247 143 8 21 243 209 440 1.16e-12 70.5
MS.gene46086.t1 MTR_7g066360 38.076 499 237 11 12 495 5 446 9.90e-79 254
MS.gene46086.t1 MTR_7g066400 35.876 485 231 12 27 494 12 433 3.20e-76 247
MS.gene46086.t1 MTR_7g066400 25.551 227 142 7 18 242 230 431 9.32e-15 76.6
MS.gene46086.t1 MTR_7g063720 52.692 260 93 6 248 505 2 233 7.70e-76 239
MS.gene46086.t1 MTR_7g063720 29.817 218 131 7 27 242 23 220 3.90e-19 87.0
MS.gene46086.t1 MTR_1g014060 35.169 472 207 11 40 505 13 391 9.98e-75 241
MS.gene46086.t1 MTR_7g066480 42.210 353 170 11 26 360 15 351 1.73e-69 229
MS.gene46086.t1 MTR_7g066480 37.838 111 66 1 392 499 312 422 3.68e-11 65.5
MS.gene46086.t1 MTR_2g029400 33.540 483 231 10 12 487 5 404 2.07e-68 225
MS.gene46086.t1 MTR_7g066310 34.316 475 213 12 26 498 6 383 4.41e-67 221
MS.gene46086.t1 MTR_7g066490 41.033 329 164 6 21 339 12 320 6.09e-64 214
MS.gene46086.t1 MTR_4g017830 31.961 510 299 14 28 504 13 507 1.08e-63 216
MS.gene46086.t1 MTR_4g017440 32.233 515 298 15 21 498 2 502 8.24e-63 213
MS.gene46086.t1 MTR_7g058700 39.412 340 153 7 39 355 531 840 2.86e-61 216
MS.gene46086.t1 MTR_7g058700 37.324 142 75 2 378 505 787 928 2.85e-12 69.7
MS.gene46086.t1 MTR_4g017410 31.214 519 295 14 19 504 1 490 7.20e-60 205
MS.gene46086.t1 MTR_7g063850 43.182 308 151 8 198 504 4 288 2.54e-58 195
MS.gene46086.t1 MTR_4g017610 31.579 494 275 16 30 494 16 475 7.37e-58 199
MS.gene46086.t1 MTR_4g019340 31.238 509 282 16 16 488 27 503 2.38e-55 193
MS.gene46086.t1 MTR_4g017470 30.214 513 273 12 28 504 13 476 1.33e-54 191
MS.gene46086.t1 MTR_4g017470 26.400 250 145 8 20 241 225 463 6.53e-11 65.1
MS.gene46086.t1 MTR_7g062270 52.222 180 80 4 19 194 1 178 2.12e-51 180
MS.gene46086.t1 MTR_7g100420 39.450 327 174 9 171 494 88 393 8.81e-51 178
MS.gene46086.t1 MTR_7g100420 68.627 51 16 0 20 70 32 82 1.54e-13 72.8
MS.gene46086.t1 MTR_7g063690 40.426 282 101 7 19 295 3 222 1.34e-48 168
MS.gene46086.t1 MTR_7g066280 32.195 410 241 10 106 498 1 390 3.89e-47 169
MS.gene46086.t1 MTR_8g023240 27.254 488 311 15 18 492 27 483 2.07e-43 162
MS.gene46086.t1 MTR_4g017550 29.675 492 284 18 41 495 4 470 3.42e-41 154
MS.gene46086.t1 MTR_4g017550 29.098 244 136 8 19 241 239 466 1.49e-13 73.2
MS.gene46086.t1 MTR_7g066680 36.774 310 144 8 225 494 37 334 2.38e-40 149
MS.gene46086.t1 MTR_7g066680 26.455 189 120 6 27 205 86 265 1.02e-12 69.7
MS.gene46086.t1 MTR_8g445860 30.472 233 144 6 27 248 13 238 1.69e-26 108
MS.gene46086.t1 MTR_8g445860 29.956 227 148 5 268 491 13 231 1.69e-18 85.1
MS.gene46086.t1 MTR_1g115440 29.918 244 143 6 20 247 7 238 2.30e-22 96.3
MS.gene46086.t1 MTR_1g115440 28.761 226 157 3 268 492 11 233 4.51e-17 81.3
MS.gene46086.t1 MTR_0150s0010 28.980 245 147 6 20 247 3 237 3.01e-22 95.9
MS.gene46086.t1 MTR_0150s0010 30.870 230 145 6 268 491 10 231 6.93e-19 86.3
MS.gene46086.t1 MTR_7g063760 56.164 73 31 1 434 505 2 74 7.11e-21 87.0
MS.gene46086.t1 MTR_1g115455 27.347 245 151 7 19 248 1 233 1.56e-16 79.3
MS.gene46086.t1 MTR_1g115455 27.074 229 153 4 268 492 9 227 5.66e-14 72.0
MS.gene46086.t1 MTR_7g063870 61.111 54 21 0 24 77 28 81 7.38e-14 72.0
MS.gene46086.t1 MTR_7g063870 54.688 64 28 1 170 232 94 157 7.44e-12 66.2
MS.gene46086.t1 MTR_1g115450 37.500 80 50 0 268 347 7 86 2.08e-11 62.0
MS.gene46086.t1 MTR_7g066390 43.529 85 44 2 414 498 42 122 5.20e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46086.t1 AT3G09140 32.171 516 293 12 19 499 1 494 1.19e-64 218
MS.gene46086.t1 AT5G01120 33.676 487 288 13 30 494 12 485 3.06e-60 206
MS.gene46086.t1 AT5G01120 24.800 250 168 7 1 241 244 482 3.53e-12 68.9
MS.gene46086.t1 AT3G09140 30.515 544 293 13 19 499 1 522 3.08e-59 204
MS.gene46086.t1 AT5G01150 31.809 503 296 11 19 498 1 479 4.15e-58 201
MS.gene46086.t1 AT5G43240 33.130 492 288 13 30 494 12 489 3.41e-54 190
MS.gene46086.t1 AT5G43240 33.130 492 288 13 30 494 12 489 3.41e-54 190
MS.gene46086.t1 AT5G43240 33.130 492 288 13 30 494 12 489 3.41e-54 190
MS.gene46086.t1 AT5G01140 28.687 495 294 13 19 498 1 451 1.11e-50 180
MS.gene46086.t1 AT5G01130 29.577 497 280 12 19 498 1 444 1.32e-49 176
MS.gene46086.t1 AT3G09110 34.615 312 187 4 30 329 12 318 6.48e-48 169
MS.gene46086.t1 AT3G09120 34.405 311 182 7 26 319 5 310 2.40e-41 150
MS.gene46086.t1 AT3G09120 27.200 250 161 7 263 499 1 242 1.05e-13 72.4
MS.gene46086.t1 AT5G37320 27.734 512 289 18 27 499 11 480 2.24e-35 138
MS.gene46086.t1 AT5G43240 30.060 336 209 10 173 494 22 345 7.44e-19 88.6

Find 73 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTTCTTGACACATTT+TGG 0.067658 7.2:-41774001 MS.gene46086:CDS
ATCACTTGCCTTAGGTGATT+TGG 0.194221 7.2:+41773145 None:intergenic
CGCATTATTATTACTATAAT+AGG 0.196846 7.2:-41773289 MS.gene46086:CDS
CACTTGTTAACCAATGTTAA+AGG 0.225881 7.2:-41772794 MS.gene46086:CDS
AATACTTGATCTTCTGTATT+AGG 0.245210 7.2:+41774433 None:intergenic
GGCGGAGTTGTTCGCGTATT+AGG 0.267322 7.2:-41773479 MS.gene46086:CDS
CTAAGCATGCTTCAGAATTC+TGG 0.274857 7.2:-41773899 MS.gene46086:CDS
TCAAGTATTGTTGAAACTTC+TGG 0.275481 7.2:-41774419 MS.gene46086:CDS
CTATAATAGGTTCCTAGGTT+TGG 0.323823 7.2:-41773276 MS.gene46086:CDS
ATTAGGAGGGAATTGCTCTT+TGG 0.327353 7.2:-41773462 MS.gene46086:CDS
TCACTTGCCTTAGGTGATTT+GGG 0.328981 7.2:+41773146 None:intergenic
TATAATAGGTTCCTAGGTTT+GGG 0.331462 7.2:-41773275 MS.gene46086:CDS
CAGAGTACTTCATATGTTGC+AGG 0.336309 7.2:-41774105 MS.gene46086:CDS
TTCAGACAACCAATGGTAAC+TGG 0.356771 7.2:+41774268 None:intergenic
TCACCTAAGGCAAGTGATAA+TGG 0.365777 7.2:-41773140 MS.gene46086:CDS
GCAGTGTCTGAGCATATTAA+AGG 0.368152 7.2:-41772858 MS.gene46086:intron
TTCAGCAATTAAGACTTTGT+TGG 0.376814 7.2:+41774384 None:intergenic
ACTTGTTAACCAATGTTAAA+GGG 0.387534 7.2:-41772793 MS.gene46086:CDS
GTATGTGGTTACAGATGATT+TGG 0.389987 7.2:-41773090 MS.gene46086:CDS
TATTACTATAATAGGTTCCT+AGG 0.390455 7.2:-41773281 MS.gene46086:CDS
TTAGGAGGGAATTGCTCTTT+GGG 0.394467 7.2:-41773461 MS.gene46086:CDS
ACACTTGACCTCTGGATCAA+TGG 0.409415 7.2:+41773644 None:intergenic
AGCTTCTTCACATTGCCATT+AGG 0.414279 7.2:-41774331 MS.gene46086:CDS
GGGAAAGGATTTGTTAAAGA+AGG 0.419018 7.2:-41773980 MS.gene46086:CDS
AGTCTTGCAATATTTCCTAA+TGG 0.422679 7.2:+41774316 None:intergenic
AATCTTCAGAAGAGTTCTTC+GGG 0.424237 7.2:+41774170 None:intergenic
TAATCTTCAGAAGAGTTCTT+CGG 0.426593 7.2:+41774169 None:intergenic
AAAGTCTTAATTGCTGAAGC+AGG 0.453365 7.2:-41774379 MS.gene46086:CDS
TGACAAAAGAAGCAAAGAAA+AGG 0.458594 7.2:-41773385 MS.gene46086:CDS
TCATTTCTCCCCTTTAACAT+TGG 0.461160 7.2:+41772784 None:intergenic
CAAATCTGTTAGAGTAGACT+TGG 0.461652 7.2:+41773682 None:intergenic
ATTTGGGATTACTACTAACT+AGG 0.472685 7.2:+41773162 None:intergenic
TCGTCGTTTGCTCTAACAAA+TGG 0.479714 7.2:-41772824 MS.gene46086:CDS
AGCCCTGTGAATTCTGAGTT+CGG 0.486240 7.2:+41773920 None:intergenic
TGTCTGAACAAACTTTATCA+AGG 0.490886 7.2:-41774253 MS.gene46086:CDS
AAGAGAAAACACTTGACCTC+TGG 0.496645 7.2:+41773636 None:intergenic
TCTCAACGTCACTAAGGAAA+AGG 0.499259 7.2:-41773843 MS.gene46086:intron
TAACCATTATCACTTGCCTT+AGG 0.502444 7.2:+41773137 None:intergenic
AAGGAAAAGCTTGTCACCAT+TGG 0.519499 7.2:-41772996 MS.gene46086:CDS
TCTTACCTCCTTGATGCCAA+TGG 0.523413 7.2:+41772980 None:intergenic
GCTTGTCACCATTGGCATCA+AGG 0.526563 7.2:-41772988 MS.gene46086:CDS
GGAGTTGTTCGCGTATTAGG+AGG 0.538074 7.2:-41773476 MS.gene46086:CDS
GGCAAGATATTGTTTGCTCA+AGG 0.542741 7.2:-41773551 MS.gene46086:CDS
TGTTGATCCACACTTGGCAC+CGG 0.545388 7.2:-41773360 MS.gene46086:CDS
ATGCCGAACTCAGAATTCAC+AGG 0.548559 7.2:-41773923 MS.gene46086:CDS
AATGACTCTCAACGTCACTA+AGG 0.552198 7.2:-41773849 MS.gene46086:CDS
TTTCCTTCACATCATGAAGA+GGG 0.554951 7.2:+41773012 None:intergenic
AAGAGGGGACCAGTTACCAT+TGG 0.557514 7.2:-41774277 MS.gene46086:CDS
TTGCTTAATTTGTTGAACTC+CGG 0.560839 7.2:+41773341 None:intergenic
TAGTAATCCCAAATCACCTA+AGG 0.565873 7.2:-41773153 MS.gene46086:CDS
CTTGTTAACCAATGTTAAAG+GGG 0.566746 7.2:-41772792 MS.gene46086:CDS
AAGAAAGTTGAACGACTCAA+AGG 0.567556 7.2:+41774013 None:intergenic
AAGTTTGTTCAGACAACCAA+TGG 0.569049 7.2:+41774261 None:intergenic
TCGTAGAGAAGGACTCAAAG+AGG 0.569922 7.2:-41774294 MS.gene46086:CDS
GAGTTGTTCGCGTATTAGGA+GGG 0.571871 7.2:-41773475 MS.gene46086:CDS
AGTCCCTCTTCATGATGTGA+AGG 0.573117 7.2:-41773015 MS.gene46086:CDS
CAACATATGAAGTACTCTGT+AGG 0.586113 7.2:+41774109 None:intergenic
TTGAACTCCGGTGCCAAGTG+TGG 0.586212 7.2:+41773353 None:intergenic
TATTGCAAGACTCGTAGAGA+AGG 0.586657 7.2:-41774305 MS.gene46086:CDS
TTTCTCACATTTCCTTTGGG+CGG 0.589849 7.2:-41773497 MS.gene46086:CDS
AAGTCTTAATTGCTGAAGCA+GGG 0.590272 7.2:-41774378 MS.gene46086:CDS
CGTAGAGAAGGACTCAAAGA+GGG 0.590650 7.2:-41774293 MS.gene46086:CDS
AATGGTTATGTAAAAGCAGA+GGG 0.594931 7.2:-41773122 MS.gene46086:CDS
ACGCGAACAACTCCGCCCAA+AGG 0.598183 7.2:+41773485 None:intergenic
AAAAGAAACCATTGATCCAG+AGG 0.604981 7.2:-41773652 MS.gene46086:CDS
AAGGCTTGTTGATCCACACT+TGG 0.608575 7.2:-41773366 MS.gene46086:CDS
TAATGCTATTACCCAAACCT+AGG 0.609121 7.2:+41773264 None:intergenic
AGAGGGACACAGAAAGTATG+TGG 0.617669 7.2:-41773105 MS.gene46086:CDS
TTATGTGAGAACTGATAGAG+AGG 0.644156 7.2:-41773189 MS.gene46086:CDS
TAATGGTTATGTAAAAGCAG+AGG 0.652935 7.2:-41773123 MS.gene46086:CDS
TGCCGAACTCAGAATTCACA+GGG 0.676332 7.2:-41773922 MS.gene46086:CDS
GTAGAGAAGGACTCAAAGAG+GGG 0.681398 7.2:-41774292 MS.gene46086:CDS
TGTCACCATTGGCATCAAGG+AGG 0.741971 7.2:-41772985 MS.gene46086:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTGATGATAAAAATTAAA+AGG + chr7.2:41773518-41773537 None:intergenic 10.0%
!!! ATTAAAAATAGATTTGAAAT+TGG + chr7.2:41774233-41774252 None:intergenic 10.0%
!! CGCATTATTATTACTATAAT+AGG - chr7.2:41773991-41774010 MS.gene46086:CDS 20.0%
!! TGATGATAAAAATTAAAAGG+CGG + chr7.2:41773515-41773534 None:intergenic 20.0%
!!! ATTTTCGAAAAACTAACTTA+AGG + chr7.2:41773704-41773723 None:intergenic 20.0%
!!! GATTGATTAATATTTTGTAC+AGG - chr7.2:41773545-41773564 MS.gene46086:CDS 20.0%
!!! TTAGTTTTTCGAAAATCAAA+TGG - chr7.2:41773708-41773727 MS.gene46086:CDS 20.0%
! AAAAAACACAGGTTCAATAA+CGG - chr7.2:41773407-41773426 MS.gene46086:CDS 25.0%
! AATACTTGATCTTCTGTATT+AGG + chr7.2:41772850-41772869 None:intergenic 25.0%
! TATAAAGCAAGCAACAAATT+AGG + chr7.2:41773488-41773507 None:intergenic 25.0%
! TATTAAAAAAGAGGAGCAAA+AGG - chr7.2:41772792-41772811 MS.gene46086:CDS 25.0%
! TATTACTATAATAGGTTCCT+AGG - chr7.2:41773999-41774018 MS.gene46086:CDS 25.0%
!! AAAGGTTGCTATTAAAAAAG+AGG - chr7.2:41772810-41772829 MS.gene46086:CDS 25.0%
!! ACTTGTTAACCAATGTTAAA+GGG - chr7.2:41774487-41774506 MS.gene46086:CDS 25.0%
!!! AATTCTGGAATAAAAAACAC+AGG - chr7.2:41773396-41773415 MS.gene46086:CDS 25.0%
AATGGTTATGTAAAAGCAGA+GGG - chr7.2:41774158-41774177 MS.gene46086:CDS 30.0%
ACAGACAAAAATTGTGTGTA+TGG - chr7.2:41773240-41773259 MS.gene46086:CDS 30.0%
AGTCTTGCAATATTTCCTAA+TGG + chr7.2:41772967-41772986 None:intergenic 30.0%
CTTGTTAACCAATGTTAAAG+GGG - chr7.2:41774488-41774507 MS.gene46086:CDS 30.0%
TAATCTTCAGAAGAGTTCTT+CGG + chr7.2:41773114-41773133 None:intergenic 30.0%
TAATGGTTATGTAAAAGCAG+AGG - chr7.2:41774157-41774176 MS.gene46086:CDS 30.0%
TATAATAGGTTCCTAGGTTT+GGG - chr7.2:41774005-41774024 MS.gene46086:CDS 30.0%
TGACAAAAGAAGCAAAGAAA+AGG - chr7.2:41773895-41773914 MS.gene46086:CDS 30.0%
TGTCTGAACAAACTTTATCA+AGG - chr7.2:41773027-41773046 MS.gene46086:CDS 30.0%
TTCAGCAATTAAGACTTTGT+TGG + chr7.2:41772899-41772918 None:intergenic 30.0%
! AAGTTTTCTCACATTTCCTT+TGG - chr7.2:41773779-41773798 MS.gene46086:intron 30.0%
! AGTTTTCTCACATTTCCTTT+GGG - chr7.2:41773780-41773799 MS.gene46086:intron 30.0%
! ATTTGGGATTACTACTAACT+AGG + chr7.2:41774121-41774140 None:intergenic 30.0%
! CAACTTTCTTGACACATTTT+GGG - chr7.2:41773280-41773299 MS.gene46086:CDS 30.0%
! CACTTGTTAACCAATGTTAA+AGG - chr7.2:41774486-41774505 MS.gene46086:CDS 30.0%
! TCAACTTTCTTGACACATTT+TGG - chr7.2:41773279-41773298 MS.gene46086:CDS 30.0%
! TCAAGTATTGTTGAAACTTC+TGG - chr7.2:41772861-41772880 MS.gene46086:intron 30.0%
!! TTGCTTAATTTGTTGAACTC+CGG + chr7.2:41773942-41773961 None:intergenic 30.0%
AAAAGAAACCATTGATCCAG+AGG - chr7.2:41773628-41773647 MS.gene46086:CDS 35.0%
AAAGTCTTAATTGCTGAAGC+AGG - chr7.2:41772901-41772920 MS.gene46086:intron 35.0%
AAGAAAGTTGAACGACTCAA+AGG + chr7.2:41773270-41773289 None:intergenic 35.0%
AAGTCTTAATTGCTGAAGCA+GGG - chr7.2:41772902-41772921 MS.gene46086:intron 35.0%
AATCTTCAGAAGAGTTCTTC+GGG + chr7.2:41773113-41773132 None:intergenic 35.0%
CAAATCTGTTAGAGTAGACT+TGG + chr7.2:41773601-41773620 None:intergenic 35.0%
CTATAATAGGTTCCTAGGTT+TGG - chr7.2:41774004-41774023 MS.gene46086:CDS 35.0%
GTATGTGGTTACAGATGATT+TGG - chr7.2:41774190-41774209 MS.gene46086:CDS 35.0%
TAACCATTATCACTTGCCTT+AGG + chr7.2:41774146-41774165 None:intergenic 35.0%
TAATGCTATTACCCAAACCT+AGG + chr7.2:41774019-41774038 None:intergenic 35.0%
TAGTAATCCCAAATCACCTA+AGG - chr7.2:41774127-41774146 MS.gene46086:CDS 35.0%
TCATTTCTCCCCTTTAACAT+TGG + chr7.2:41774499-41774518 None:intergenic 35.0%
TTATGTGAGAACTGATAGAG+AGG - chr7.2:41774091-41774110 MS.gene46086:CDS 35.0%
TTTCCTTCACATCATGAAGA+GGG + chr7.2:41774271-41774290 None:intergenic 35.0%
! AAGTTTGTTCAGACAACCAA+TGG + chr7.2:41773022-41773041 None:intergenic 35.0%
! CAACATATGAAGTACTCTGT+AGG + chr7.2:41773174-41773193 None:intergenic 35.0%
! TTTTCCTTCACATCATGAAG+AGG + chr7.2:41774272-41774291 None:intergenic 35.0%
!! GGGAAAGGATTTGTTAAAGA+AGG - chr7.2:41773300-41773319 MS.gene46086:CDS 35.0%
!! TTCTTGACACATTTTGGGAA+AGG - chr7.2:41773285-41773304 MS.gene46086:CDS 35.0%
AAACCAAAAAACACGACGCA+TGG + chr7.2:41774353-41774372 None:intergenic 40.0%
AAGAGAAAACACTTGACCTC+TGG + chr7.2:41773647-41773666 None:intergenic 40.0%
AAGGAAAAGCTTGTCACCAT+TGG - chr7.2:41774284-41774303 MS.gene46086:CDS 40.0%
AATGACTCTCAACGTCACTA+AGG - chr7.2:41773431-41773450 MS.gene46086:CDS 40.0%
AGCTTCTTCACATTGCCATT+AGG - chr7.2:41772949-41772968 MS.gene46086:intron 40.0%
ATCACTTGCCTTAGGTGATT+TGG + chr7.2:41774138-41774157 None:intergenic 40.0%
ATTAGGAGGGAATTGCTCTT+TGG - chr7.2:41773818-41773837 MS.gene46086:intron 40.0%
CTAAGCATGCTTCAGAATTC+TGG - chr7.2:41773381-41773400 MS.gene46086:CDS 40.0%
GCAGTGTCTGAGCATATTAA+AGG - chr7.2:41774422-41774441 MS.gene46086:CDS 40.0%
GGCAAGATATTGTTTGCTCA+AGG - chr7.2:41773729-41773748 MS.gene46086:intron 40.0%
TATTGCAAGACTCGTAGAGA+AGG - chr7.2:41772975-41772994 MS.gene46086:intron 40.0%
TCACCTAAGGCAAGTGATAA+TGG - chr7.2:41774140-41774159 MS.gene46086:CDS 40.0%
TCACTTGCCTTAGGTGATTT+GGG + chr7.2:41774137-41774156 None:intergenic 40.0%
TCGTCGTTTGCTCTAACAAA+TGG - chr7.2:41774456-41774475 MS.gene46086:CDS 40.0%
TCTCAACGTCACTAAGGAAA+AGG - chr7.2:41773437-41773456 MS.gene46086:CDS 40.0%
TTAGGAGGGAATTGCTCTTT+GGG - chr7.2:41773819-41773838 MS.gene46086:intron 40.0%
TTCAGACAACCAATGGTAAC+TGG + chr7.2:41773015-41773034 None:intergenic 40.0%
TTTCTCACATTTCCTTTGGG+CGG - chr7.2:41773783-41773802 MS.gene46086:intron 40.0%
! CAGAGTACTTCATATGTTGC+AGG - chr7.2:41773175-41773194 MS.gene46086:CDS 40.0%
ACACTTGACCTCTGGATCAA+TGG + chr7.2:41773639-41773658 None:intergenic 45.0%
AGCCCTGTGAATTCTGAGTT+CGG + chr7.2:41773363-41773382 None:intergenic 45.0%
AGTCCCTCTTCATGATGTGA+AGG - chr7.2:41774265-41774284 MS.gene46086:CDS 45.0%
ATGCCGAACTCAGAATTCAC+AGG - chr7.2:41773357-41773376 MS.gene46086:CDS 45.0%
CGTAGAGAAGGACTCAAAGA+GGG - chr7.2:41772987-41773006 MS.gene46086:CDS 45.0%
GAGTTGTTCGCGTATTAGGA+GGG - chr7.2:41773805-41773824 MS.gene46086:intron 45.0%
GTAGAGAAGGACTCAAAGAG+GGG - chr7.2:41772988-41773007 MS.gene46086:CDS 45.0%
TCGTAGAGAAGGACTCAAAG+AGG - chr7.2:41772986-41773005 MS.gene46086:CDS 45.0%
TCTTACCTCCTTGATGCCAA+TGG + chr7.2:41774303-41774322 None:intergenic 45.0%
TGCCGAACTCAGAATTCACA+GGG - chr7.2:41773358-41773377 MS.gene46086:CDS 45.0%
! AGAGGGACACAGAAAGTATG+TGG - chr7.2:41774175-41774194 MS.gene46086:CDS 45.0%
! TGCGCACGTAGCTTTTGAAT+AGG + chr7.2:41773975-41773994 None:intergenic 45.0%
!! AAGGCTTGTTGATCCACACT+TGG - chr7.2:41773914-41773933 MS.gene46086:CDS 45.0%
!!! TCACCATGCGTCGTGTTTTT+TGG - chr7.2:41774347-41774366 MS.gene46086:CDS 45.0%
AAGAGGGGACCAGTTACCAT+TGG - chr7.2:41773003-41773022 MS.gene46086:CDS 50.0%
GCTTGTCACCATTGGCATCA+AGG - chr7.2:41774292-41774311 MS.gene46086:CDS 50.0%
GGAGTTGTTCGCGTATTAGG+AGG - chr7.2:41773804-41773823 MS.gene46086:intron 50.0%
TGTCACCATTGGCATCAAGG+AGG - chr7.2:41774295-41774314 MS.gene46086:CDS 50.0%
TGTTGATCCACACTTGGCAC+CGG - chr7.2:41773920-41773939 MS.gene46086:CDS 50.0%
GGCGGAGTTGTTCGCGTATT+AGG - chr7.2:41773801-41773820 MS.gene46086:intron 55.0%
! TTGAACTCCGGTGCCAAGTG+TGG + chr7.2:41773930-41773949 None:intergenic 55.0%
ACGCGAACAACTCCGCCCAA+AGG + chr7.2:41773798-41773817 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 41772784 41774518 41772784 ID=MS.gene46086
chr7.2 mRNA 41772784 41774518 41772784 ID=MS.gene46086.t1;Parent=MS.gene46086
chr7.2 exon 41773844 41774518 41773844 ID=MS.gene46086.t1.exon1;Parent=MS.gene46086.t1
chr7.2 CDS 41773844 41774518 41773844 ID=cds.MS.gene46086.t1;Parent=MS.gene46086.t1
chr7.2 exon 41772986 41773735 41772986 ID=MS.gene46086.t1.exon2;Parent=MS.gene46086.t1
chr7.2 CDS 41772986 41773735 41772986 ID=cds.MS.gene46086.t1;Parent=MS.gene46086.t1
chr7.2 exon 41772784 41772876 41772784 ID=MS.gene46086.t1.exon3;Parent=MS.gene46086.t1
chr7.2 CDS 41772784 41772876 41772784 ID=cds.MS.gene46086.t1;Parent=MS.gene46086.t1
Gene Sequence

>MS.gene46086

ATGGCTGCTATTAAAAAAGAGGAGCAAAAGGTTGCTATTAAAAAAGAGGAGCAAGTAGCTGCTCCTAATACAGAAGATCAAGTATTGTTGAAACTTCTGGTGAACAAAGAGACCAACAAAGTCTTAATTGCTGAAGCAGGGAAAGAGTTTGTTGATGTTCTATTTAGCTTCTTCACATTGCCATTAGGAAATATTGCAAGACTCGTAGAGAAGGACTCAAAGAGGGGACCAGTTACCATTGGTTGTCTGAACAAACTTTATCAAGGTGTGATAGATCTCGATGAAGAGTGTATGCAAACTGAGACAAGCAAAGAAATGTTATTGCACCCGAAGAACTCTTCTGAAGATTATTGCATCAATCTTAAACTTAACATTGATGACATTAAGCCTACAGAGTACTTCATATGTTGCAGGTTTGATTGTCAATGCATACAACAACATAATTTATACACTTCTACAGACAAAAATTGTGTGTATGGAAAACCTTTGAGTCGTTCAACTTTCTTGACACATTTTGGGAAAGGATTTGTTAAAGAAGGTGCAGCTTTTGTTATTACTGATGATCTAATTGTCATGCCGAACTCAGAATTCACAGGGCTAAGCATGCTTCAGAATTCTGGAATAAAAAACACAGGTTCAATAACGGAAATGACTCTCAACGTCACTAAGGAAAAGGTTATTATAAATTTATAGCTGTGTTTCCTAATTTGTTGCTTGCTTTATATACACCGCCTTTTAATTTTTATCATCAATTCATTTGCGATTGATTAATATTTTGTACAGGTACTCGATCTTTTAAAGTGTGCATTGCTCTCCAAGTCTACTCTAACAGATTTGTTTCTAAAAAAGAAACCATTGATCCAGAGGTCAAGTGTTTTCTCTTGTGATGCTGTCATCAAGAAAAATATCAAGATCAGCCTTAAGTTAGTTTTTCGAAAATCAAATGGCAAGATATTGTTTGCTCAAGGAGAAAAAGATTTTGTTGACTTACTTTTAAGTTTTCTCACATTTCCTTTGGGCGGAGTTGTTCGCGTATTAGGAGGGAATTGCTCTTTGGGTAACATTGATTTTCTGTACAAGAGCATAGTTGATTTGCATGCAAACACATTTTTGACAAAAGAAGCAAAGAAAAGGCTTGTTGATCCACACTTGGCACCGGAGTTCAACAAATTAAGCAAGCAGATATTACCTATTCAAAAGCTACGTGCGCATTATTATTACTATAATAGGTTCCTAGGTTTGGGTAATAGCATTATTCAGAATCAATATTTCTTTAGTGATGAAAATATCAGCAATGAATATGCAGATTATGTGAGAACTGATAGAGAGGTGAACCTAGTTAGTAGTAATCCCAAATCACCTAAGGCAAGTGATAATGGTTATGTAAAAGCAGAGGGACACAGAAAGTATGTGGTTACAGATGATTTGGTCATTGCAACGTCTTCTCCAATTTCAAATCTATTTTTAATCAACAATTTCAAAGTCCCTCTTCATGATGTGAAGGAAAAGCTTGTCACCATTGGCATCAAGGAGGTAAGAAATGACAATTTATACATATATTTGTCACCATGCGTCGTGTTTTTTGGTTTGCTAGATTGATTGAAGATACTATTGCTAATTTTACATAATTGCGTTGTTGCAGTGTCTGAGCATATTAAAGGCATCTTTGTCATCGTCGTTTGCTCTAACAAATGGTCTTCGTCACTTGTTAACCAATGTTAAAGGGGAGAAATGA
Protein sequence

>MS.gene46086.t1

MAAIKKEEQKVAIKKEEQVAAPNTEDQVLLKLLVNKETNKVLIAEAGKEFVDVLFSFFTLPLGNIARLVEKDSKRGPVTIGCLNKLYQGVIDLDEECMQTETSKEMLLHPKNSSEDYCINLKLNIDDIKPTEYFICCRFDCQCIQQHNLYTSTDKNCVYGKPLSRSTFLTHFGKGFVKEGAAFVITDDLIVMPNSEFTGLSMLQNSGIKNTGSITEMTLNVTKEKVLDLLKCALLSKSTLTDLFLKKKPLIQRSSVFSCDAVIKKNIKISLKLVFRKSNGKILFAQGEKDFVDLLLSFLTFPLGGVVRVLGGNCSLGNIDFLYKSIVDLHANTFLTKEAKKRLVDPHLAPEFNKLSKQILPIQKLRAHYYYYNRFLGLGNSIIQNQYFFSDENISNEYADYVRTDREVNLVSSNPKSPKASDNGYVKAEGHRKYVVTDDLVIATSSPISNLFLINNFKVPLHDVKEKLVTIGIKECLSILKASLSSSFALTNGLRHLLTNVKGEK