AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055070.t1 MTR_7g066480 92.558 430 31 1 1 429 1 430 0.0 802
MS.gene055070.t1 MTR_7g066490 82.639 432 56 4 1 429 1 416 0.0 696
MS.gene055070.t1 MTR_7g066340 41.814 452 210 11 16 422 12 455 1.80e-97 300
MS.gene055070.t1 MTR_7g066340 28.440 218 123 9 14 229 261 447 1.84e-11 66.2
MS.gene055070.t1 MTR_7g066260 42.418 455 209 10 16 422 15 464 5.07e-97 300
MS.gene055070.t1 MTR_7g066350 42.152 446 206 10 16 417 9 446 1.95e-93 289
MS.gene055070.t1 MTR_7g062300 37.021 470 217 9 16 417 12 470 1.52e-89 280
MS.gene055070.t1 MTR_7g062280 38.115 488 209 12 16 421 10 486 1.30e-88 278
MS.gene055070.t1 MTR_7g066290 40.920 435 223 10 11 421 10 434 1.55e-88 276
MS.gene055070.t1 MTR_7g066410 45.559 349 152 7 16 331 10 353 1.35e-87 276
MS.gene055070.t1 MTR_7g066410 63.855 83 30 0 339 421 431 513 8.33e-24 103
MS.gene055070.t1 MTR_7g066360 41.964 448 207 11 17 422 15 451 1.73e-87 275
MS.gene055070.t1 MTR_7g066430 46.471 340 164 6 14 341 2 335 6.86e-87 273
MS.gene055070.t1 MTR_7g066430 66.667 75 25 0 346 420 411 485 3.46e-22 99.0
MS.gene055070.t1 MTR_3g007740 40.611 458 207 13 11 421 4 443 2.48e-86 270
MS.gene055070.t1 MTR_7g012680 39.434 459 201 8 16 422 14 447 1.12e-85 269
MS.gene055070.t1 MTR_7g063880 37.838 481 208 10 16 427 11 469 1.46e-83 264
MS.gene055070.t1 MTR_1g041315 37.642 441 220 8 16 404 14 451 2.22e-80 256
MS.gene055070.t1 MTR_7g063920 37.149 463 192 9 16 421 11 431 4.91e-80 254
MS.gene055070.t1 MTR_7g063670 37.288 472 220 9 4 421 3 452 7.43e-80 254
MS.gene055070.t1 MTR_7g063660 36.632 475 221 11 16 421 9 472 1.06e-79 254
MS.gene055070.t1 MTR_7g066400 37.969 453 202 10 14 416 10 433 2.59e-78 249
MS.gene055070.t1 MTR_7g063840 37.447 470 217 9 17 421 11 468 4.26e-78 250
MS.gene055070.t1 MTR_7g063830 39.254 456 215 14 11 421 1 439 3.29e-76 244
MS.gene055070.t1 MTR_7g066310 36.508 441 184 10 16 422 7 385 4.67e-75 240
MS.gene055070.t1 MTR_7g058710 35.354 495 212 11 16 426 12 482 2.70e-74 240
MS.gene055070.t1 MTR_7g066570 43.827 324 163 4 17 332 15 327 3.04e-74 243
MS.gene055070.t1 MTR_7g066570 59.722 72 29 0 351 422 411 482 1.10e-17 85.9
MS.gene055070.t1 MTR_7g058700 37.559 426 190 8 28 416 531 917 8.85e-73 246
MS.gene055070.t1 MTR_7g063900 41.935 341 181 5 12 344 5 336 1.28e-72 236
MS.gene055070.t1 MTR_7g063890 42.061 359 169 10 12 350 21 360 2.13e-69 228
MS.gene055070.t1 MTR_7g063820 42.059 340 174 10 17 344 11 339 3.66e-64 214
MS.gene055070.t1 MTR_7g063820 47.945 73 37 1 350 421 407 479 3.09e-11 65.5
MS.gene055070.t1 MTR_1g014060 36.881 404 219 6 27 422 11 386 1.71e-63 209
MS.gene055070.t1 MTR_7g066580 40.979 327 152 8 22 341 1 293 2.75e-60 202
MS.gene055070.t1 MTR_7g066580 54.795 73 29 1 351 423 376 444 4.89e-14 73.9
MS.gene055070.t1 MTR_4g019310 34.004 497 228 13 19 426 11 496 8.50e-60 203
MS.gene055070.t1 MTR_4g019340 32.359 479 221 14 17 408 39 501 2.38e-45 164
MS.gene055070.t1 MTR_4g017410 30.021 483 259 11 14 421 7 485 3.47e-45 164
MS.gene055070.t1 MTR_4g017610 29.106 481 239 12 19 417 16 476 1.11e-43 159
MS.gene055070.t1 MTR_2g029400 33.648 318 141 6 16 332 14 262 7.92e-42 152
MS.gene055070.t1 MTR_2g029400 26.036 169 108 3 263 414 15 183 6.48e-12 67.4
MS.gene055070.t1 MTR_2g029400 53.226 62 29 0 348 409 343 404 3.28e-11 65.1
MS.gene055070.t1 MTR_7g066280 30.353 425 166 14 95 422 1 392 2.41e-41 151
MS.gene055070.t1 MTR_3g065200 30.733 423 218 10 15 424 2 362 5.38e-39 146
MS.gene055070.t1 MTR_4g017470 33.529 340 178 6 17 344 13 316 3.17e-38 144
MS.gene055070.t1 MTR_4g017830 33.795 361 201 12 17 353 13 359 2.49e-37 142
MS.gene055070.t1 MTR_4g017830 38.614 101 51 1 320 420 412 501 1.81e-11 66.2
MS.gene055070.t1 MTR_7g063720 39.500 200 72 3 265 417 26 223 6.61e-35 130
MS.gene055070.t1 MTR_7g063720 27.826 230 141 10 6 229 10 220 2.80e-11 63.9
MS.gene055070.t1 MTR_4g017440 31.694 366 194 9 14 344 12 356 6.75e-34 133
MS.gene055070.t1 MTR_7g062270 41.667 168 92 2 17 178 11 178 1.51e-32 127
MS.gene055070.t1 MTR_8g023240 29.560 318 191 10 17 323 38 333 8.58e-28 116
MS.gene055070.t1 MTR_7g066680 31.410 312 113 8 212 429 37 341 1.43e-27 112
MS.gene055070.t1 MTR_7g063690 32.601 273 121 8 17 289 13 222 3.11e-27 109
MS.gene055070.t1 MTR_4g017550 31.348 319 185 11 30 325 3 310 1.59e-26 111
MS.gene055070.t1 MTR_7g066390 48.413 126 59 2 303 423 1 125 5.34e-24 97.8
MS.gene055070.t1 MTR_8g445860 32.787 244 140 9 7 235 4 238 1.28e-21 93.6
MS.gene055070.t1 MTR_1g115440 31.799 239 132 9 16 234 11 238 3.86e-18 83.6
MS.gene055070.t1 MTR_4g019330 38.012 171 90 4 257 416 13 178 1.37e-16 78.2
MS.gene055070.t1 MTR_0150s0010 29.583 240 144 6 12 234 6 237 2.43e-15 75.5
MS.gene055070.t1 MTR_2g067310 36.364 154 63 5 27 179 58 177 7.97e-14 71.2
MS.gene055070.t1 MTR_7g063850 40.449 89 53 0 341 429 203 291 2.05e-13 70.9
MS.gene055070.t1 MTR_7g063850 34.459 148 75 5 186 332 5 131 2.25e-13 70.9
MS.gene055070.t1 MTR_7g063760 44.444 72 39 1 356 426 2 73 2.60e-13 65.5
MS.gene055070.t1 MTR_1g115450 44.318 88 44 1 12 99 3 85 3.72e-13 67.0
MS.gene055070.t1 MTR_1g115455 27.984 243 142 7 12 235 5 233 1.02e-12 67.8
MS.gene055070.t1 MTR_4g019240 29.825 171 79 3 262 420 13 154 3.06e-12 65.5
MS.gene055070.t1 MTR_0150s0030 41.379 87 45 2 14 99 6 87 7.30e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055070.t1 AT3G09140 32.323 495 249 12 14 425 7 498 1.19e-55 192
MS.gene055070.t1 AT3G09140 30.962 520 251 13 14 425 7 526 1.74e-53 187
MS.gene055070.t1 AT5G01130 31.087 460 250 11 16 426 9 450 7.02e-49 172
MS.gene055070.t1 AT5G01120 30.801 487 239 12 17 416 10 485 1.39e-48 173
MS.gene055070.t1 AT5G01140 27.941 476 247 8 18 426 11 457 2.80e-45 163
MS.gene055070.t1 AT3G09110 33.123 317 200 4 18 327 11 322 3.99e-44 157
MS.gene055070.t1 AT5G01150 28.601 479 258 11 18 421 11 480 8.37e-41 152
MS.gene055070.t1 AT5G37320 30.435 483 250 17 15 421 8 480 1.48e-40 151
MS.gene055070.t1 AT3G09120 32.099 324 189 7 12 316 2 313 6.03e-39 142
MS.gene055070.t1 AT5G43240 33.060 366 210 11 17 357 10 365 3.90e-36 139
MS.gene055070.t1 AT5G43240 33.060 366 210 11 17 357 10 365 3.90e-36 139
MS.gene055070.t1 AT5G43240 33.060 366 210 11 17 357 10 365 3.90e-36 139

Find 67 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGTTTCTGTGAAAATTT+TGG 0.216022 7.4:-38015116 MS.gene055070:CDS
TATTGTTCCATCAAATTAAT+TGG 0.226939 7.4:+38014866 None:intergenic
TTGGATTTAAAATATCTTTC+AGG 0.240482 7.4:+38013783 None:intergenic
CAGTAGCAGCTTCGCTTCTT+AGG 0.241207 7.4:+38014761 None:intergenic
CTTAGACAATAAATCTGATT+TGG 0.246131 7.4:+38013764 None:intergenic
GAGAATTCCTCTCTCTGATT+TGG 0.271322 7.4:-38013619 MS.gene055070:CDS
ATTCAAGAGCATGGTTGATT+TGG 0.281674 7.4:-38013808 MS.gene055070:CDS
TGAGAAATTTGAGAATTATC+AGG 0.305949 7.4:+38014632 None:intergenic
TAAGAAAATTCTGTATGCTT+TGG 0.306163 7.4:-38013937 MS.gene055070:CDS
AAGAAAATTCTGTATGCTTT+GGG 0.312199 7.4:-38013936 MS.gene055070:CDS
AATGTATTGGATTTAGATTT+TGG 0.319002 7.4:-38014023 MS.gene055070:CDS
GGTTCGACCAATTAATTTGA+TGG 0.328737 7.4:-38014873 MS.gene055070:CDS
CAAGAGTCCTTCAACATATA+TGG 0.334427 7.4:-38013706 MS.gene055070:CDS
ACCTCTAACAGACGTATTCT+TGG 0.335993 7.4:-38014081 MS.gene055070:CDS
TTGTCATTGGTTGCAAGAAA+TGG 0.341523 7.4:+38013421 None:intergenic
GGAGTTGAGAACATGTTAAA+TGG 0.344732 7.4:-38013861 MS.gene055070:CDS
GTATCTTGGATGTGAAAATA+TGG 0.345574 7.4:-38014588 MS.gene055070:CDS
TCCAATACATTGACAGGTCT+TGG 0.352633 7.4:+38014035 None:intergenic
GTTTCTCTTCTGAAGTATCT+TGG 0.357240 7.4:-38014602 MS.gene055070:CDS
AGTTTCTTAACTTTGCCATT+AGG 0.370562 7.4:-38015028 MS.gene055070:CDS
AAAATTCTCTTTGTCAAGGT+TGG 0.380539 7.4:+38014922 None:intergenic
ATTTAGTGAAGTGCTCCTTA+TGG 0.380971 7.4:-38014112 MS.gene055070:CDS
GCATGGGAGCACACCTTGTA+AGG 0.388782 7.4:-38013998 MS.gene055070:CDS
CTTCTATTGTTCCCCTTACA+AGG 0.392190 7.4:+38013985 None:intergenic
GCCAAGAATACGTCTGTTAG+AGG 0.398341 7.4:+38014080 None:intergenic
TTGCCATTAGGCACTATTGC+AGG 0.406724 7.4:-38015016 MS.gene055070:CDS
TCATCATCAGCTCTAACTAA+TGG 0.430844 7.4:-38013451 MS.gene055070:CDS
ACCAAGACCTGTCAATGTAT+TGG 0.433905 7.4:-38014036 MS.gene055070:CDS
CAACAAAGTCCTTCCCTGCT+TGG 0.437327 7.4:+38015062 None:intergenic
CACAGAAACTTCAGTGGATG+GGG 0.462605 7.4:+38015126 None:intergenic
GAAGAAAGAATGATTAGCAT+TGG 0.467741 7.4:-38013597 MS.gene055070:CDS
TCTGTTACCATATATGTTGA+AGG 0.472437 7.4:+38013699 None:intergenic
TCAGCTCTAACTAATGGTCT+TGG 0.481193 7.4:-38013445 MS.gene055070:CDS
TCTAAATCCAATACATTGAC+AGG 0.482402 7.4:+38014029 None:intergenic
ACCTAAAATTCTCTTTGTCA+AGG 0.486256 7.4:+38014918 None:intergenic
TTCACAGAAACTTCAGTGGA+TGG 0.488867 7.4:+38015124 None:intergenic
GGAACAAAACCATTCTTAGC+AGG 0.489021 7.4:+38014698 None:intergenic
TAGAGGTGTCGCCGACCATA+AGG 0.500207 7.4:+38014097 None:intergenic
ATAGATTATCTATGTTGTCT+AGG 0.508322 7.4:+38013829 None:intergenic
AAAGGAAATCGCATCGGTAG+AGG 0.509174 7.4:+38013653 None:intergenic
AGTCCTGCAATAGTGCCTAA+TGG 0.509874 7.4:+38015013 None:intergenic
TCACAGAAACTTCAGTGGAT+GGG 0.511080 7.4:+38015125 None:intergenic
AAGGGGAACAATAGAAGTAA+AGG 0.522163 7.4:-38013979 MS.gene055070:CDS
AACATGTTAAATGGAAACTC+TGG 0.523592 7.4:-38013852 MS.gene055070:CDS
ATAAGAAAAGTTGCGGTCAC+CGG 0.523846 7.4:+38014677 None:intergenic
TCTGTATGCTTTGGGTGAAG+AGG 0.540891 7.4:-38013928 MS.gene055070:CDS
GACTGTTGATATCACTCGTA+AGG 0.541024 7.4:-38014549 MS.gene055070:CDS
CTTTCTTCCAAATCAGAGAG+AGG 0.543946 7.4:+38013612 None:intergenic
AACATGAAGAATGTTAGTGT+TGG 0.544227 7.4:-38014974 MS.gene055070:CDS
TGTTCTCAACTCCTCCCAAA+GGG 0.549781 7.4:+38013871 None:intergenic
GATTAGCATTGGCAATAAAG+AGG 0.572173 7.4:-38013586 MS.gene055070:intron
CATGGGAGCACACCTTGTAA+GGG 0.584012 7.4:-38013997 MS.gene055070:CDS
ATCTGAGATAAGAAAAGTTG+CGG 0.589869 7.4:+38014670 None:intergenic
AGATAATCTATTCAAGAGCA+TGG 0.593603 7.4:-38013817 MS.gene055070:CDS
ATCGCATCGGTAGAGGAACC+TGG 0.597504 7.4:+38013660 None:intergenic
TTTATTTGTCCAAGCAGGGA+AGG 0.601075 7.4:-38015071 MS.gene055070:CDS
AGTGAAGTGCTCCTTATGGT+CGG 0.606083 7.4:-38014108 MS.gene055070:CDS
AACAATAGAAGTAAAGGCAA+TGG 0.611013 7.4:-38013973 MS.gene055070:CDS
GTTACGTAGGAAAGTAGCCA+TGG 0.616515 7.4:+38015162 None:intergenic
ATGTTCTCAACTCCTCCCAA+AGG 0.619718 7.4:+38013870 None:intergenic
GAAAAGAACCTATTTATGTG+AGG 0.621159 7.4:-38014729 MS.gene055070:CDS
AGTCAGAAAGGAAATCGCAT+CGG 0.623415 7.4:+38013647 None:intergenic
ATGGGAGCACACCTTGTAAG+GGG 0.628802 7.4:-38013996 MS.gene055070:CDS
TTGATGACACAGAAAAGTTG+AGG 0.631875 7.4:-38014820 MS.gene055070:CDS
CAAAGCAATTGAAGTTACGT+AGG 0.644804 7.4:+38015149 None:intergenic
TGTTGATATCACTCGTAAGG+AGG 0.661482 7.4:-38014546 MS.gene055070:intron
GATGACTTAGTCATCACACC+AGG 0.706265 7.4:-38013678 MS.gene055070:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTTTAATTTTTTTTG+TGG - chr7.4:38015053-38015072 MS.gene055070:CDS 10.0%
!!! AAATTTTGTGATTGTATTTA+TGG + chr7.4:38014357-38014376 None:intergenic 15.0%
!!! AGATTTTGAAAAAGAATTAT+TGG - chr7.4:38013671-38013690 MS.gene055070:CDS 15.0%
!!! ATACATTTTAGAATTTACAA+AGG + chr7.4:38014401-38014420 None:intergenic 15.0%
!! GTTATAGACATATAACAATT+TGG - chr7.4:38014228-38014247 MS.gene055070:intron 20.0%
!! TATTGTTCCATCAAATTAAT+TGG + chr7.4:38013702-38013721 None:intergenic 20.0%
!!! AATGTATTGGATTTAGATTT+TGG - chr7.4:38014542-38014561 MS.gene055070:intron 20.0%
!!! TTGGATTTAAAATATCTTTC+AGG + chr7.4:38014785-38014804 None:intergenic 20.0%
!!! TTTTTTAACCTCACATAAAT+AGG + chr7.4:38013847-38013866 None:intergenic 20.0%
! AAGAAAATTCTGTATGCTTT+GGG - chr7.4:38014629-38014648 MS.gene055070:CDS 25.0%
! ATAGATTATCTATGTTGTCT+AGG + chr7.4:38014739-38014758 None:intergenic 25.0%
! CATTTATATTGTAATCTCCT+AGG + chr7.4:38014207-38014226 None:intergenic 25.0%
! CTTAGACAATAAATCTGATT+TGG + chr7.4:38014804-38014823 None:intergenic 25.0%
! TAAGAAAATTCTGTATGCTT+TGG - chr7.4:38014628-38014647 MS.gene055070:CDS 25.0%
! TGAGAAATTTGAGAATTATC+AGG + chr7.4:38013936-38013955 None:intergenic 25.0%
!! AGCATACAGAATTTTCTTAT+TGG + chr7.4:38014627-38014646 None:intergenic 25.0%
!! CAAGTAAAATCCAATTTTGA+TGG - chr7.4:38014824-38014843 MS.gene055070:CDS 25.0%
!! TGAAGTTTCTGTGAAAATTT+TGG - chr7.4:38013449-38013468 MS.gene055070:CDS 25.0%
!!! AAATTTTTTGACATTCCCTT+TGG - chr7.4:38014679-38014698 MS.gene055070:CDS 25.0%
!!! AATTCTCATTTTAGTCAGAA+AGG + chr7.4:38014933-38014952 None:intergenic 25.0%
!!! AATTTTTTGACATTCCCTTT+GGG - chr7.4:38014680-38014699 MS.gene055070:CDS 25.0%
!!! GATTTGTTTTCCATCAAAAT+TGG + chr7.4:38014837-38014856 None:intergenic 25.0%
!!! GTTTAAGATTTTCTTGTCAT+TGG + chr7.4:38015160-38015179 None:intergenic 25.0%
AAAAAGAAGTTACTTCCCAA+AGG - chr7.4:38014153-38014172 MS.gene055070:intron 30.0%
AAAATTCTCTTTGTCAAGGT+TGG + chr7.4:38013646-38013665 None:intergenic 30.0%
AACAATAGAAGTAAAGGCAA+TGG - chr7.4:38014592-38014611 MS.gene055070:CDS 30.0%
AACATGAAGAATGTTAGTGT+TGG - chr7.4:38013591-38013610 MS.gene055070:CDS 30.0%
AACATGTTAAATGGAAACTC+TGG - chr7.4:38014713-38014732 MS.gene055070:CDS 30.0%
ACAATTCCTATGATTTCCTT+TGG + chr7.4:38014172-38014191 None:intergenic 30.0%
ACCTAAAATTCTCTTTGTCA+AGG + chr7.4:38013650-38013669 None:intergenic 30.0%
AGATAATCTATTCAAGAGCA+TGG - chr7.4:38014748-38014767 MS.gene055070:CDS 30.0%
AGTTTCTTAACTTTGCCATT+AGG - chr7.4:38013537-38013556 MS.gene055070:intron 30.0%
CAATTCCTATGATTTCCTTT+GGG + chr7.4:38014171-38014190 None:intergenic 30.0%
CATAAGAAACATGAACTTGT+CGG + chr7.4:38015038-38015057 None:intergenic 30.0%
GAAAAGAACCTATTTATGTG+AGG - chr7.4:38013836-38013855 MS.gene055070:CDS 30.0%
GAAGAAAGAATGATTAGCAT+TGG - chr7.4:38014968-38014987 MS.gene055070:CDS 30.0%
GTATCTTGGATGTGAAAATA+TGG - chr7.4:38013977-38013996 MS.gene055070:CDS 30.0%
GTTAAAAAACCTGCTAAGAA+TGG - chr7.4:38013858-38013877 MS.gene055070:CDS 30.0%
TCTAAATCCAATACATTGAC+AGG + chr7.4:38014539-38014558 None:intergenic 30.0%
TCTGTTACCATATATGTTGA+AGG + chr7.4:38014869-38014888 None:intergenic 30.0%
! AATTTTCACAGAAACTTCAG+TGG + chr7.4:38013448-38013467 None:intergenic 30.0%
! ACCTTGACAAAGAGAATTTT+AGG - chr7.4:38013646-38013665 MS.gene055070:CDS 30.0%
! ATCTGAGATAAGAAAAGTTG+CGG + chr7.4:38013898-38013917 None:intergenic 30.0%
!! AAGTTGAGGTCTTTTAATTG+TGG - chr7.4:38013759-38013778 MS.gene055070:CDS 30.0%
!! GATTTAGATTTTGGTAGCAT+GGG - chr7.4:38014551-38014570 MS.gene055070:CDS 30.0%
!!! AAAGTTTTATTTGTCCAAGC+AGG - chr7.4:38013489-38013508 MS.gene055070:intron 30.0%
!!! AAGTTTTATTTGTCCAAGCA+GGG - chr7.4:38013490-38013509 MS.gene055070:intron 30.0%
!!! AATTTTTTTTGTGGAACTGC+AGG - chr7.4:38015062-38015081 MS.gene055070:CDS 30.0%
AAGGGGAACAATAGAAGTAA+AGG - chr7.4:38014586-38014605 MS.gene055070:CDS 35.0%
CAAAGCAATTGAAGTTACGT+AGG + chr7.4:38013419-38013438 None:intergenic 35.0%
CAAGAGTCCTTCAACATATA+TGG - chr7.4:38014859-38014878 MS.gene055070:CDS 35.0%
GGAGTTGAGAACATGTTAAA+TGG - chr7.4:38014704-38014723 MS.gene055070:CDS 35.0%
TACTTCCCAAAGGAAATCAT+AGG - chr7.4:38014163-38014182 MS.gene055070:intron 35.0%
! ATTCAAGAGCATGGTTGATT+TGG - chr7.4:38014757-38014776 MS.gene055070:CDS 35.0%
! ATTTAGTGAAGTGCTCCTTA+TGG - chr7.4:38014453-38014472 MS.gene055070:intron 35.0%
! GGTTCGACCAATTAATTTGA+TGG - chr7.4:38013692-38013711 MS.gene055070:CDS 35.0%
! TCATCATCAGCTCTAACTAA+TGG - chr7.4:38015114-38015133 MS.gene055070:CDS 35.0%
! TGTAATCTCCTAGGATTAGT+AGG + chr7.4:38014198-38014217 None:intergenic 35.0%
! TTGATGACACAGAAAAGTTG+AGG - chr7.4:38013745-38013764 MS.gene055070:CDS 35.0%
! TTGTCATTGGTTGCAAGAAA+TGG + chr7.4:38015147-38015166 None:intergenic 35.0%
!! GATTAGCATTGGCAATAAAG+AGG - chr7.4:38014979-38014998 MS.gene055070:CDS 35.0%
!! GGATTTAGATTTTGGTAGCA+TGG - chr7.4:38014550-38014569 MS.gene055070:CDS 35.0%
!! GTTTCTCTTCTGAAGTATCT+TGG - chr7.4:38013963-38013982 MS.gene055070:CDS 35.0%
!!! TGCTAAGAATGGTTTTGTTC+CGG - chr7.4:38013869-38013888 MS.gene055070:CDS 35.0%
ACCAAGACCTGTCAATGTAT+TGG - chr7.4:38014529-38014548 MS.gene055070:intron 40.0%
ACCTCTAACAGACGTATTCT+TGG - chr7.4:38014484-38014503 MS.gene055070:intron 40.0%
ACTAGTATGCCTGAACTTCT+TGG + chr7.4:38014326-38014345 None:intergenic 40.0%
AGTCAGAAAGGAAATCGCAT+CGG + chr7.4:38014921-38014940 None:intergenic 40.0%
ATAAGAAAAGTTGCGGTCAC+CGG + chr7.4:38013891-38013910 None:intergenic 40.0%
ATTGTCCACCTACTAATCCT+AGG - chr7.4:38014187-38014206 MS.gene055070:intron 40.0%
CATGATTTCCCAAGAAGTTC+AGG - chr7.4:38014314-38014333 MS.gene055070:intron 40.0%
CTAGTATGCCTGAACTTCTT+GGG + chr7.4:38014325-38014344 None:intergenic 40.0%
CTTCTATTGTTCCCCTTACA+AGG + chr7.4:38014583-38014602 None:intergenic 40.0%
CTTTCTTCCAAATCAGAGAG+AGG + chr7.4:38014956-38014975 None:intergenic 40.0%
GACTGTTGATATCACTCGTA+AGG - chr7.4:38014016-38014035 MS.gene055070:CDS 40.0%
GAGAATTCCTCTCTCTGATT+TGG - chr7.4:38014946-38014965 MS.gene055070:CDS 40.0%
GGAACAAAACCATTCTTAGC+AGG + chr7.4:38013870-38013889 None:intergenic 40.0%
TCACAGAAACTTCAGTGGAT+GGG + chr7.4:38013443-38013462 None:intergenic 40.0%
TCCAATACATTGACAGGTCT+TGG + chr7.4:38014533-38014552 None:intergenic 40.0%
TGTTGATATCACTCGTAAGG+AGG - chr7.4:38014019-38014038 MS.gene055070:CDS 40.0%
TTCACAGAAACTTCAGTGGA+TGG + chr7.4:38013444-38013463 None:intergenic 40.0%
TTTATTTGTCCAAGCAGGGA+AGG - chr7.4:38013494-38013513 MS.gene055070:intron 40.0%
! AATCTCCTAGGATTAGTAGG+TGG + chr7.4:38014195-38014214 None:intergenic 40.0%
! TCAGCTCTAACTAATGGTCT+TGG - chr7.4:38015120-38015139 MS.gene055070:CDS 40.0%
! TTTTTGACATTCCCTTTGGG+AGG - chr7.4:38014683-38014702 MS.gene055070:CDS 40.0%
AGTCCTGCAATAGTGCCTAA+TGG + chr7.4:38013555-38013574 None:intergenic 45.0%
ATGTTCTCAACTCCTCCCAA+AGG + chr7.4:38014698-38014717 None:intergenic 45.0%
CACAGAAACTTCAGTGGATG+GGG + chr7.4:38013442-38013461 None:intergenic 45.0%
GATGACTTAGTCATCACACC+AGG - chr7.4:38014887-38014906 MS.gene055070:CDS 45.0%
GCCAAGAATACGTCTGTTAG+AGG + chr7.4:38014488-38014507 None:intergenic 45.0%
TGTTCTCAACTCCTCCCAAA+GGG + chr7.4:38014697-38014716 None:intergenic 45.0%
TTGCCATTAGGCACTATTGC+AGG - chr7.4:38013549-38013568 MS.gene055070:intron 45.0%
! AAAGGAAATCGCATCGGTAG+AGG + chr7.4:38014915-38014934 None:intergenic 45.0%
! AGTGAAGTGCTCCTTATGGT+CGG - chr7.4:38014457-38014476 MS.gene055070:intron 45.0%
! TCTGTATGCTTTGGGTGAAG+AGG - chr7.4:38014637-38014656 MS.gene055070:CDS 45.0%
CAACAAAGTCCTTCCCTGCT+TGG + chr7.4:38013506-38013525 None:intergenic 50.0%
CAGTAGCAGCTTCGCTTCTT+AGG + chr7.4:38013807-38013826 None:intergenic 50.0%
! ATGGGAGCACACCTTGTAAG+GGG - chr7.4:38014569-38014588 MS.gene055070:CDS 50.0%
! CATGGGAGCACACCTTGTAA+GGG - chr7.4:38014568-38014587 MS.gene055070:CDS 50.0%
! ATCGCATCGGTAGAGGAACC+TGG + chr7.4:38014908-38014927 None:intergenic 55.0%
! GCATGGGAGCACACCTTGTA+AGG - chr7.4:38014567-38014586 MS.gene055070:CDS 55.0%
!! TAGAGGTGTCGCCGACCATA+AGG + chr7.4:38014471-38014490 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 38013405 38015182 38013405 ID=MS.gene055070
chr7.4 mRNA 38013405 38015182 38013405 ID=MS.gene055070.t1;Parent=MS.gene055070
chr7.4 exon 38014547 38015182 38014547 ID=MS.gene055070.t1.exon1;Parent=MS.gene055070.t1
chr7.4 CDS 38014547 38015182 38014547 ID=cds.MS.gene055070.t1;Parent=MS.gene055070.t1
chr7.4 exon 38013587 38014141 38013587 ID=MS.gene055070.t1.exon2;Parent=MS.gene055070.t1
chr7.4 CDS 38013587 38014141 38013587 ID=cds.MS.gene055070.t1;Parent=MS.gene055070.t1
chr7.4 exon 38013405 38013503 38013405 ID=MS.gene055070.t1.exon3;Parent=MS.gene055070.t1
chr7.4 CDS 38013405 38013503 38013405 ID=cds.MS.gene055070.t1;Parent=MS.gene055070.t1
Gene Sequence

>MS.gene055070

ATGGCTACTTTCCTACGTAACTTCAATTGCTTTGCCCCATCCACTGAAGTTTCTGTGAAAATTTTGGTAGATGAAGTCAGAAACAAAGTTTTATTTGTCCAAGCAGGGAAGGACTTTGTTGATGTGCTGCTAAGTTTCTTAACTTTGCCATTAGGCACTATTGCAGGACTTTTGAGTCAAGAATCTAACATGAAGAATGTTAGTGTTGGAAGCTTAAGCATGTTATATCAAAGTGTTTCCAACCTTGACAAAGAGAATTTTAGGTCAGATTTTGAAAAAGAATTATTGGTTCGACCAATTAATTTGATGGAACAATATTGCAAGTATCTAAAACTCAACATTGATGACACAGAAAAGTTGAGGTCTTTTAATTGTGGCAAACAAAAGTGCATTGATATACCTAAGAAGCGAAGCTGCTACTGCTGTGAAAAGAAAAGAACCTATTTATGTGAGGTTAAAAAACCTGCTAAGAATGGTTTTGTTCCGGTGACCGCAACTTTTCTTATCTCAGATGATTTGAATGTGAAGCCTGATAATTCTCAAATTTCTCAAAATAGTGTTTCTCTTCTGAAGTATCTTGGATGTGAAAATATGGATTCTATCAAGATAGTGACTGTTGATATCACTCGTAAGGAGGTATCTATCTCTTTTGAAAATTCTCAATACTCTTGTATAATTTATGTCTAATGTGATTTTCTTTGCTTTAAAATTTGCTAAAAAAACTTTATGAATATAGACGAAAAAACGTAAAAAGAAGTTACTTCCCAAAGGAAATCATAGGAATTGTCCACCTACTAATCCTAGGAGATTACAATATAAATGTGTTATAGACATATAACAATTTGGTAGAAATATGCTGTAATTTGTATCTACTTTCATGTTCGATATATTGAAAGTTATAGAATTTTACATGATTTCCCAAGAAGTTCAGGCATACTAGTACTATCATCCATAAATACAATCACAAAATTTTGTTCAAATTTATCTAAATTTCCTTTGTAAATTCTAAAATGTATAACATTTTACATTGCTTTATTGTAGATACTAGATTTAGTGAAGTGCTCCTTATGGTCGGCGACACCTCTAACAGACGTATTCTTGGCGAAGAAACTGTTTATTGAGAAACCAAGACCTGTCAATGTATTGGATTTAGATTTTGGTAGCATGGGAGCACACCTTGTAAGGGGAACAATAGAAGTAAAGGCAATGGTGAGAAAATCCAATAAGAAAATTCTGTATGCTTTGGGTGAAGAGGACTTTGCAGACTTGTTACTAAATTTTTTGACATTCCCTTTGGGAGGAGTTGAGAACATGTTAAATGGAAACTCTGGCCTAGACAACATAGATAATCTATTCAAGAGCATGGTTGATTTGGATCCTGAAAGATATTTTAAATCCAAATCAGATTTATTGTCTAAGCAAGTAAAATCCAATTTTGATGGAAAACAAATCATCAAGAGTCCTTCAACATATATGGTAACAGATGACTTAGTCATCACACCAGGTTCCTCTACCGATGCGATTTCCTTTCTGACTAAAATGAGAATTCCTCTCTCTGATTTGGAAGAAAGAATGATTAGCATTGGCAATAAAGAGGTAAATTGCTGTTGTCGATTTCATTTCTTTTATTCCGACAAGTTCATGTTTCTTATGTTTTAATTTTTTTTGTGGAACTGCAGGCTCATAGTCTTCTTAAAGCTTCTTTGATCTCATCATCAGCTCTAACTAATGGTCTTGGTCCATTTCTTGCAACCAATGACAAGAAAATCTTAAACTAA
Protein sequence

>MS.gene055070.t1

MATFLRNFNCFAPSTEVSVKILVDEVRNKVLFVQAGKDFVDVLLSFLTLPLGTIAGLLSQESNMKNVSVGSLSMLYQSVSNLDKENFRSDFEKELLVRPINLMEQYCKYLKLNIDDTEKLRSFNCGKQKCIDIPKKRSCYCCEKKRTYLCEVKKPAKNGFVPVTATFLISDDLNVKPDNSQISQNSVSLLKYLGCENMDSIKIVTVDITRKEILDLVKCSLWSATPLTDVFLAKKLFIEKPRPVNVLDLDFGSMGAHLVRGTIEVKAMVRKSNKKILYALGEEDFADLLLNFLTFPLGGVENMLNGNSGLDNIDNLFKSMVDLDPERYFKSKSDLLSKQVKSNFDGKQIIKSPSTYMVTDDLVITPGSSTDAISFLTKMRIPLSDLEERMISIGNKEAHSLLKASLISSSALTNGLGPFLATNDKKILN