AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96850

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96850.t1 MTR_7g062280 80.887 293 56 0 1 293 200 492 1.49e-165 469
MS.gene96850.t1 MTR_7g062280 27.660 235 145 8 67 280 10 240 1.34e-14 73.9
MS.gene96850.t1 MTR_7g062300 77.352 287 59 3 1 285 190 472 2.01e-148 424
MS.gene96850.t1 MTR_7g062300 28.125 224 146 7 67 280 12 230 4.15e-15 75.5
MS.gene96850.t1 MTR_7g063920 67.577 293 89 2 1 293 151 437 7.32e-129 374
MS.gene96850.t1 MTR_7g063920 27.149 221 114 6 67 280 11 191 2.17e-13 70.5
MS.gene96850.t1 MTR_7g063840 55.290 293 129 2 1 293 184 474 6.30e-99 298
MS.gene96850.t1 MTR_7g063840 29.646 226 130 9 70 280 13 224 3.08e-14 72.8
MS.gene96850.t1 MTR_7g063900 55.049 307 121 8 1 293 186 489 3.56e-92 281
MS.gene96850.t1 MTR_7g063900 29.148 223 143 7 67 280 10 226 1.40e-17 82.8
MS.gene96850.t1 MTR_7g063660 54.639 291 129 2 6 293 188 478 1.06e-91 280
MS.gene96850.t1 MTR_7g063660 30.222 225 142 8 64 280 6 223 7.41e-16 77.8
MS.gene96850.t1 MTR_7g063670 53.535 297 104 6 5 293 188 458 4.92e-90 275
MS.gene96850.t1 MTR_3g007740 52.721 294 110 6 1 287 172 443 9.16e-87 266
MS.gene96850.t1 MTR_3g007740 30.396 227 122 8 67 280 9 212 4.09e-14 72.4
MS.gene96850.t1 MTR_7g063880 53.535 297 119 6 1 292 186 468 2.66e-85 263
MS.gene96850.t1 MTR_7g063880 31.250 224 136 7 67 280 11 226 2.10e-15 76.3
MS.gene96850.t1 MTR_7g063820 51.712 292 128 4 11 293 198 485 4.09e-85 263
MS.gene96850.t1 MTR_7g063820 28.251 223 151 4 65 280 8 228 4.29e-17 81.6
MS.gene96850.t1 MTR_7g063720 52.823 248 100 4 47 293 2 233 4.89e-83 250
MS.gene96850.t1 MTR_7g063890 56.579 304 119 7 1 292 202 504 1.37e-80 252
MS.gene96850.t1 MTR_7g063890 31.222 221 140 6 67 280 27 242 1.52e-19 88.6
MS.gene96850.t1 MTR_7g063830 50.704 284 103 6 11 292 196 444 1.57e-77 243
MS.gene96850.t1 MTR_7g063830 27.876 226 140 6 68 280 11 226 8.50e-15 74.7
MS.gene96850.t1 MTR_7g063850 46.259 294 133 9 6 292 13 288 6.26e-68 213
MS.gene96850.t1 MTR_7g066430 41.391 302 150 6 6 286 190 485 6.53e-62 204
MS.gene96850.t1 MTR_7g066430 28.862 246 119 10 67 280 4 225 6.07e-13 69.3
MS.gene96850.t1 MTR_7g100420 43.346 263 142 3 24 282 134 393 4.67e-54 181
MS.gene96850.t1 MTR_7g066410 38.854 314 152 7 12 288 204 514 4.70e-54 183
MS.gene96850.t1 MTR_7g066410 32.402 179 107 6 67 234 10 185 2.82e-13 70.1
MS.gene96850.t1 MTR_7g066570 39.249 293 154 5 15 290 199 484 2.77e-53 182
MS.gene96850.t1 MTR_7g066570 29.333 225 133 7 68 280 15 225 5.98e-14 72.4
MS.gene96850.t1 MTR_7g066260 39.310 290 140 6 6 286 200 462 2.57e-50 173
MS.gene96850.t1 MTR_7g066260 30.531 226 140 8 67 280 15 235 8.65e-17 80.5
MS.gene96850.t1 MTR_7g058710 34.277 318 169 6 1 293 182 484 1.61e-47 166
MS.gene96850.t1 MTR_7g058710 32.000 225 128 8 67 280 12 222 5.99e-19 87.0
MS.gene96850.t1 MTR_7g066400 34.539 304 160 7 1 288 159 439 7.11e-47 163
MS.gene96850.t1 MTR_3g065200 38.571 280 126 7 1 273 168 408 2.32e-46 162
MS.gene96850.t1 MTR_7g066480 36.770 291 114 6 5 287 194 422 3.14e-46 161
MS.gene96850.t1 MTR_7g066480 29.536 237 145 10 54 280 6 230 1.28e-13 70.9
MS.gene96850.t1 MTR_7g066580 34.084 311 169 7 4 289 149 448 4.30e-45 158
MS.gene96850.t1 MTR_7g066580 31.333 150 80 4 79 217 7 144 2.73e-11 63.9
MS.gene96850.t1 MTR_7g012680 37.895 285 138 5 23 293 193 452 1.03e-44 157
MS.gene96850.t1 MTR_7g012680 29.018 224 123 5 67 280 14 211 5.42e-15 75.1
MS.gene96850.t1 MTR_7g066490 34.948 289 118 5 7 287 182 408 7.22e-43 152
MS.gene96850.t1 MTR_7g066350 34.007 297 155 3 1 288 187 451 1.14e-41 149
MS.gene96850.t1 MTR_7g066350 32.143 224 137 6 67 280 9 227 1.17e-17 83.2
MS.gene96850.t1 MTR_4g019310 35.082 305 174 7 4 293 202 497 2.84e-41 149
MS.gene96850.t1 MTR_7g066680 36.364 308 137 9 24 282 37 334 4.03e-41 145
MS.gene96850.t1 MTR_7g066290 35.540 287 126 4 6 286 200 433 1.14e-39 144
MS.gene96850.t1 MTR_7g066290 40.000 85 45 2 67 146 15 98 3.21e-12 67.0
MS.gene96850.t1 MTR_7g066340 33.922 283 139 4 16 286 207 453 5.23e-39 142
MS.gene96850.t1 MTR_7g066340 29.333 225 144 8 67 280 12 232 9.96e-17 80.5
MS.gene96850.t1 MTR_7g066360 36.644 292 138 7 1 282 191 445 4.69e-38 140
MS.gene96850.t1 MTR_7g066360 29.646 226 141 6 66 280 13 231 3.17e-14 72.8
MS.gene96850.t1 MTR_7g058700 35.688 269 108 5 25 293 725 928 1.23e-37 142
MS.gene96850.t1 MTR_1g041315 34.247 292 137 8 6 275 198 456 3.77e-37 138
MS.gene96850.t1 MTR_1g041315 26.829 246 132 8 67 280 14 243 2.04e-12 67.4
MS.gene96850.t1 MTR_7g066310 35.909 220 112 3 67 286 193 383 5.98e-36 133
MS.gene96850.t1 MTR_7g066280 36.100 241 133 3 67 286 150 390 1.17e-35 132
MS.gene96850.t1 MTR_4g017830 29.653 317 187 7 4 292 199 507 1.61e-34 131
MS.gene96850.t1 MTR_4g017830 27.074 229 150 4 68 282 13 238 9.52e-11 62.4
MS.gene96850.t1 MTR_1g014060 37.563 197 108 3 97 293 210 391 3.99e-32 122
MS.gene96850.t1 MTR_1g014060 28.444 225 130 6 79 286 12 222 8.01e-17 80.1
MS.gene96850.t1 MTR_4g019340 30.496 282 176 6 1 274 232 501 2.45e-28 114
MS.gene96850.t1 MTR_4g017410 30.530 321 163 10 1 292 201 490 2.43e-26 108
MS.gene96850.t1 MTR_4g017410 28.629 248 152 5 68 293 10 254 1.07e-14 74.3
MS.gene96850.t1 MTR_4g017470 27.744 328 188 8 1 292 162 476 3.23e-26 107
MS.gene96850.t1 MTR_4g017440 27.974 311 201 6 1 292 202 508 2.24e-25 105
MS.gene96850.t1 MTR_4g017440 25.322 233 153 4 68 282 15 244 6.75e-11 63.2
MS.gene96850.t1 MTR_2g029400 29.433 282 160 6 7 275 149 404 5.25e-25 103
MS.gene96850.t1 MTR_2g029400 28.636 220 101 5 67 280 14 183 1.84e-13 70.5
MS.gene96850.t1 MTR_4g017550 30.671 313 170 9 1 282 173 469 1.26e-24 103
MS.gene96850.t1 MTR_7g063690 60.000 90 34 2 7 94 133 222 3.12e-24 98.6
MS.gene96850.t1 MTR_7g063760 58.108 74 30 1 221 293 1 74 1.08e-23 92.0
MS.gene96850.t1 MTR_4g017610 30.405 296 173 8 1 282 199 475 1.67e-21 94.4
MS.gene96850.t1 MTR_4g017610 27.706 231 144 5 70 282 16 241 8.64e-14 71.6
MS.gene96850.t1 MTR_1g115440 28.750 240 128 8 67 280 11 233 5.59e-21 89.7
MS.gene96850.t1 MTR_8g023240 25.874 286 195 8 6 280 204 483 7.56e-19 86.7
MS.gene96850.t1 MTR_7g066390 53.425 73 34 0 214 286 50 122 9.19e-18 79.0
MS.gene96850.t1 MTR_7g062270 27.326 172 113 4 68 232 11 177 3.35e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96850.t1 AT5G01140 26.421 299 199 6 4 293 172 458 2.28e-27 110
MS.gene96850.t1 AT3G09140 30.592 304 173 9 6 288 209 495 4.00e-25 104
MS.gene96850.t1 AT5G01130 26.948 308 165 8 5 293 185 451 1.89e-23 99.8
MS.gene96850.t1 AT5G01130 26.906 223 144 7 67 280 9 221 1.17e-11 65.1
MS.gene96850.t1 AT5G01120 28.767 292 177 5 15 285 207 488 2.83e-23 99.8
MS.gene96850.t1 AT3G09140 30.769 286 162 9 23 288 254 523 7.11e-23 98.6
MS.gene96850.t1 AT5G01150 25.163 306 199 8 5 292 193 486 2.13e-20 91.3
MS.gene96850.t1 AT5G01150 27.556 225 142 8 70 280 12 229 3.52e-12 67.0
MS.gene96850.t1 AT5G43240 26.910 301 188 5 4 282 55 345 1.28e-16 79.7
MS.gene96850.t1 AT5G43240 26.910 301 188 5 4 282 199 489 1.78e-16 79.7
MS.gene96850.t1 AT5G43240 26.910 301 188 5 4 282 199 489 1.78e-16 79.7
MS.gene96850.t1 AT5G43240 26.910 301 188 5 4 282 199 489 1.78e-16 79.7
MS.gene96850.t1 AT3G09120 30.043 233 135 8 67 280 6 229 4.67e-15 74.7

Find 53 sgRNAs with CRISPR-Local

Find 68 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAGGAATCGCACGGATATT+TGG 0.238302 7.3:-42918095 MS.gene96850:CDS
TTTAATATGTTCACGGAGTT+TGG 0.243222 7.3:-42918488 None:intergenic
CTTGACTCCAATTTCAGCTT+TGG 0.260143 7.3:-42917706 MS.gene96850:CDS
TAACTAGCTTCAGAATGATT+TGG 0.271516 7.3:+42918204 None:intergenic
CATCCGATGATGTCAAATAT+TGG 0.288315 7.3:+42918009 None:intergenic
TGTGAGCCAAACCATTTGTT+AGG 0.308515 7.3:+42917481 None:intergenic
GTACAAGAGTATAGTTGATT+TGG 0.317989 7.3:-42918039 MS.gene96850:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.3:+42917699 None:intergenic
TTGACTCCAATTTCAGCTTT+GGG 0.338051 7.3:-42917705 MS.gene96850:CDS
AACCATCCCTTGAGAGTTCA+AGG 0.367767 7.3:-42918262 MS.gene96850:CDS
CCTGGTGTTCATGAATATTA+TGG 0.375168 7.3:-42917912 MS.gene96850:CDS
TTCTGCCCTAACAAATGGTT+TGG 0.386717 7.3:-42917487 MS.gene96850:CDS
AACTCCCCTTAATGATTTGA+AGG 0.395649 7.3:-42917664 MS.gene96850:CDS
TTATCTAATGTGATGATTCC+TGG 0.396168 7.3:-42917789 MS.gene96850:CDS
TGTTCCTTGGGAAGCATCAA+TGG 0.409256 7.3:-42918065 MS.gene96850:CDS
CGAGATATGTAACTAATTTG+AGG 0.410701 7.3:-42917821 MS.gene96850:CDS
TCTGTAGCAAAATACATATC+TGG 0.428362 7.3:+42917747 None:intergenic
TCACATGTTAACTGAAGTTA+AGG 0.428371 7.3:-42917463 MS.gene96850:CDS
CAAATCTGTCAAGGTTGACT+TGG 0.429040 7.3:+42918298 None:intergenic
GTAGTGTCTTAACATATTGA+AGG 0.434262 7.3:-42917526 MS.gene96850:intron
TCAACTTCTGCCCTAACAAA+TGG 0.441842 7.3:-42917492 MS.gene96850:CDS
ATTTGGAGGGAATTGTTCCT+TGG 0.442429 7.3:-42918078 MS.gene96850:CDS
CCTGGTGATGGTTATGTAAA+GGG 0.442731 7.3:-42917771 MS.gene96850:CDS
TGAACACCAGGATCAAGAAT+TGG 0.448075 7.3:+42917924 None:intergenic
TCTGAATGTCACTAAAGAAA+AGG 0.453648 7.3:-42918432 MS.gene96850:intron
ATATTACCAATTCTTGATCC+TGG 0.456535 7.3:-42917930 MS.gene96850:CDS
TACAAGCTTTAATATGTTCA+CGG 0.461029 7.3:-42918495 None:intergenic
TTTGGAGGGAATTGTTCCTT+GGG 0.486733 7.3:-42918077 MS.gene96850:CDS
TTTAACTGTGAGGCAATGTA+AGG 0.492529 7.3:+42917966 None:intergenic
AACAAGTTATTGTATGCTCA+AGG 0.499394 7.3:-42918167 MS.gene96850:CDS
GTGAGCCAAACCATTTGTTA+GGG 0.517645 7.3:+42917482 None:intergenic
CATCATCGGATGCTAAGAAC+AGG 0.519251 7.3:-42917998 MS.gene96850:CDS
AGTTGTCACTATTGGCATCA+AGG 0.520473 7.3:-42917637 MS.gene96850:CDS
AACCTTGAACTCTCAAGGGA+TGG 0.527200 7.3:+42918260 None:intergenic
CAAAGCTGAAATTGGAGTCA+AGG 0.541710 7.3:+42917707 None:intergenic
CCATAATATTCATGAACACC+AGG 0.552460 7.3:+42917912 None:intergenic
TTTCTTACATTTCCTTTGGG+AGG 0.556193 7.3:-42918113 MS.gene96850:CDS
TCCTGGTGATGGTTATGTAA+AGG 0.556342 7.3:-42917772 MS.gene96850:CDS
CACAGTTAAAGTTAAGCAAG+AGG 0.561684 7.3:-42917953 MS.gene96850:CDS
AAACCAATATTTGACATCAT+CGG 0.567419 7.3:-42918012 MS.gene96850:CDS
AAAGCTGAAATTGGAGTCAA+GGG 0.571174 7.3:+42917708 None:intergenic
GGAATCGCACGGATATTTGG+AGG 0.575501 7.3:-42918092 MS.gene96850:CDS
CCCTTTACATAACCATCACC+AGG 0.576971 7.3:+42917771 None:intergenic
CCATAGTTCGGTAAAAGAAG+TGG 0.577641 7.3:-42918456 MS.gene96850:CDS
CATGTTAACTGAAGTTAAGG+AGG 0.596174 7.3:-42917460 MS.gene96850:CDS
TTCCTTTGGGAGGAATCGCA+CGG 0.612967 7.3:-42918103 MS.gene96850:CDS
CTTGCTTAACTTTAACTGTG+AGG 0.620501 7.3:+42917956 None:intergenic
ATCCGTGCGATTCCTCCCAA+AGG 0.623809 7.3:+42918101 None:intergenic
CAATCCATTGATGCTTCCCA+AGG 0.636233 7.3:+42918061 None:intergenic
ACAAGTTATTGTATGCTCAA+GGG 0.641517 7.3:-42918166 MS.gene96850:CDS
AATGTGATGATTCCTGGTGA+TGG 0.650008 7.3:-42917783 MS.gene96850:CDS
GAATCGCACGGATATTTGGA+GGG 0.659768 7.3:-42918091 MS.gene96850:CDS
TGTCACTATTGGCATCAAGG+AGG 0.742676 7.3:-42917634 MS.gene96850:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTCCTTCAAATCATTAA+GGG + chr7.3:42918278-42918297 None:intergenic 20.0%
! AAACCAATATTTGACATCAT+CGG - chr7.3:42917922-42917941 MS.gene96850:CDS 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG - chr7.3:42917817-42917836 MS.gene96850:CDS 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7.3:42917818-42917837 MS.gene96850:CDS 25.0%
!! CATTTTCAAATTCTCAAATC+TGG - chr7.3:42918082-42918101 MS.gene96850:CDS 25.0%
!! CTTTTTCCTTCAAATCATTA+AGG + chr7.3:42918279-42918298 None:intergenic 25.0%
!! TAACTACTACTGTTTTATAC+AGG - chr7.3:42917583-42917602 MS.gene96850:intron 25.0%
!! TTTTCCTTCAAATCATTAAG+GGG + chr7.3:42918277-42918296 None:intergenic 25.0%
AACAAGTTATTGTATGCTCA+AGG - chr7.3:42917767-42917786 MS.gene96850:CDS 30.0%
AAGGAAAAAGTTGTCACTAT+TGG - chr7.3:42918289-42918308 MS.gene96850:CDS 30.0%
ACAAGTTATTGTATGCTCAA+GGG - chr7.3:42917768-42917787 MS.gene96850:CDS 30.0%
ATATTACCAATTCTTGATCC+TGG - chr7.3:42918004-42918023 MS.gene96850:CDS 30.0%
CGAGATATGTAACTAATTTG+AGG - chr7.3:42918113-42918132 MS.gene96850:CDS 30.0%
GTAGTGTCTTAACATATTGA+AGG - chr7.3:42918408-42918427 MS.gene96850:intron 30.0%
TCACATGTTAACTGAAGTTA+AGG - chr7.3:42918471-42918490 MS.gene96850:CDS 30.0%
TCTGAATGTCACTAAAGAAA+AGG - chr7.3:42917502-42917521 MS.gene96850:CDS 30.0%
TCTGTAGCAAAATACATATC+TGG + chr7.3:42918190-42918209 None:intergenic 30.0%
TGGCATAAAAAACCATAGTT+CGG - chr7.3:42917466-42917485 MS.gene96850:CDS 30.0%
TTATCTAATGTGATGATTCC+TGG - chr7.3:42918145-42918164 MS.gene96850:CDS 30.0%
! GTACAAGAGTATAGTTGATT+TGG - chr7.3:42917895-42917914 MS.gene96850:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7.3:42918195-42918214 MS.gene96850:CDS 30.0%
! TAACTAGCTTCAGAATGATT+TGG + chr7.3:42917733-42917752 None:intergenic 30.0%
!! ACCTTGACAGATTTGTTTTT+AGG - chr7.3:42917644-42917663 MS.gene96850:CDS 30.0%
!!! CCTTGACAGATTTGTTTTTA+GGG - chr7.3:42917645-42917664 MS.gene96850:CDS 30.0%
AAAGCTGAAATTGGAGTCAA+GGG + chr7.3:42918229-42918248 None:intergenic 35.0%
AACTCCCCTTAATGATTTGA+AGG - chr7.3:42918270-42918289 MS.gene96850:CDS 35.0%
AGAAAAACCTTGAACTCTCA+AGG + chr7.3:42917682-42917701 None:intergenic 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.3:42918238-42918257 None:intergenic 35.0%
CACAGTTAAAGTTAAGCAAG+AGG - chr7.3:42917981-42918000 MS.gene96850:CDS 35.0%
CATCCGATGATGTCAAATAT+TGG + chr7.3:42917928-42917947 None:intergenic 35.0%
CATGTTAACTGAAGTTAAGG+AGG - chr7.3:42918474-42918493 MS.gene96850:CDS 35.0%
CCATAATATTCATGAACACC+AGG + chr7.3:42918025-42918044 None:intergenic 35.0%
CCCTAAAAACAAATCTGTCA+AGG + chr7.3:42917648-42917667 None:intergenic 35.0%
CCTGGTGTTCATGAATATTA+TGG - chr7.3:42918022-42918041 MS.gene96850:CDS 35.0%
CTTGCTTAACTTTAACTGTG+AGG + chr7.3:42917981-42918000 None:intergenic 35.0%
GAAAAACCTTGAACTCTCAA+GGG + chr7.3:42917681-42917700 None:intergenic 35.0%
TTGACTCCAATTTCAGCTTT+GGG - chr7.3:42918229-42918248 MS.gene96850:CDS 35.0%
TTTAACTGTGAGGCAATGTA+AGG + chr7.3:42917971-42917990 None:intergenic 35.0%
TTTCTTACATTTCCTTTGGG+AGG - chr7.3:42917821-42917840 MS.gene96850:CDS 35.0%
! CATTAAGGGGAGTTTTCAAA+CGG + chr7.3:42918264-42918283 None:intergenic 35.0%
AATGTGATGATTCCTGGTGA+TGG - chr7.3:42918151-42918170 MS.gene96850:CDS 40.0%
AGTTGTCACTATTGGCATCA+AGG - chr7.3:42918297-42918316 MS.gene96850:CDS 40.0%
ATTTGGAGGGAATTGTTCCT+TGG - chr7.3:42917856-42917875 MS.gene96850:CDS 40.0%
CAAAGCTGAAATTGGAGTCA+AGG + chr7.3:42918230-42918249 None:intergenic 40.0%
CAAATCTGTCAAGGTTGACT+TGG + chr7.3:42917639-42917658 None:intergenic 40.0%
CCATAGTTCGGTAAAAGAAG+TGG - chr7.3:42917478-42917497 MS.gene96850:CDS 40.0%
CTTGACTCCAATTTCAGCTT+TGG - chr7.3:42918228-42918247 MS.gene96850:CDS 40.0%
TCAACTTCTGCCCTAACAAA+TGG - chr7.3:42918442-42918461 MS.gene96850:CDS 40.0%
TGAACACCAGGATCAAGAAT+TGG + chr7.3:42918013-42918032 None:intergenic 40.0%
TGTGAGCCAAACCATTTGTT+AGG + chr7.3:42918456-42918475 None:intergenic 40.0%
TTCTGCCCTAACAAATGGTT+TGG - chr7.3:42918447-42918466 MS.gene96850:CDS 40.0%
TTTGGAGGGAATTGTTCCTT+GGG - chr7.3:42917857-42917876 MS.gene96850:CDS 40.0%
! CCACTTCTTTTACCGAACTA+TGG + chr7.3:42917481-42917500 None:intergenic 40.0%
! GTGAGCCAAACCATTTGTTA+GGG + chr7.3:42918455-42918474 None:intergenic 40.0%
!! CCTGGTGATGGTTATGTAAA+GGG - chr7.3:42918163-42918182 MS.gene96850:CDS 40.0%
!! TCCTGGTGATGGTTATGTAA+AGG - chr7.3:42918162-42918181 MS.gene96850:CDS 40.0%
AACCATCCCTTGAGAGTTCA+AGG - chr7.3:42917672-42917691 MS.gene96850:CDS 45.0%
AACCTTGAACTCTCAAGGGA+TGG + chr7.3:42917677-42917696 None:intergenic 45.0%
CAATCCATTGATGCTTCCCA+AGG + chr7.3:42917876-42917895 None:intergenic 45.0%
CATCATCGGATGCTAAGAAC+AGG - chr7.3:42917936-42917955 MS.gene96850:CDS 45.0%
CCCTTTACATAACCATCACC+AGG + chr7.3:42918166-42918185 None:intergenic 45.0%
GAATCGCACGGATATTTGGA+GGG - chr7.3:42917843-42917862 MS.gene96850:CDS 45.0%
TGTCACTATTGGCATCAAGG+AGG - chr7.3:42918300-42918319 MS.gene96850:CDS 45.0%
!! TGTTCCTTGGGAAGCATCAA+TGG - chr7.3:42917869-42917888 MS.gene96850:CDS 45.0%
GGAATCGCACGGATATTTGG+AGG - chr7.3:42917842-42917861 MS.gene96850:CDS 50.0%
GGAGGAATCGCACGGATATT+TGG - chr7.3:42917839-42917858 MS.gene96850:CDS 50.0%
! TTCCTTTGGGAGGAATCGCA+CGG - chr7.3:42917831-42917850 MS.gene96850:CDS 50.0%
ATCCGTGCGATTCCTCCCAA+AGG + chr7.3:42917836-42917855 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 42917452 42918504 42917452 ID=MS.gene96850
chr7.3 mRNA 42917452 42918504 42917452 ID=MS.gene96850.t1;Parent=MS.gene96850
chr7.3 exon 42918433 42918504 42918433 ID=MS.gene96850.t1.exon1;Parent=MS.gene96850.t1
chr7.3 CDS 42918433 42918504 42918433 ID=cds.MS.gene96850.t1;Parent=MS.gene96850.t1
chr7.3 exon 42917635 42918351 42917635 ID=MS.gene96850.t1.exon2;Parent=MS.gene96850.t1
chr7.3 CDS 42917635 42918351 42917635 ID=cds.MS.gene96850.t1;Parent=MS.gene96850.t1
chr7.3 exon 42917452 42917544 42917452 ID=MS.gene96850.t1.exon3;Parent=MS.gene96850.t1
chr7.3 CDS 42917452 42917544 42917452 ID=cds.MS.gene96850.t1;Parent=MS.gene96850.t1
Gene Sequence

>MS.gene96850

ATGTTCACGGAGTTTGGCATAAAAAACCATAGTTCGGTAAAAGAAGTGGTTCTGAATGTCACTAAAGAAAAGGTTTTGTATTTGAATACTGCGTTTGTTTATAACATCTCTCTTAAATTTTTGATTGATTATAACTACTACTGTTTTATACAGGTACTTGATTTGCTAAAGTGTTCTTTGTTTTCCAAGTCAACCTTGACAGATTTGTTTTTAGGGAAGAAACCATCCCTTGAGAGTTCAAGGTTTTTCTCGTGTGATTTTAAAATTGTTAATGATATCCAAATCATTCTGAAGCTAGTTATAAGAAAATCAGATAACAAGTTATTGTATGCTCAAGGGCAGCAAGATTTTGCAAACTTACTTTTAAGTTTTCTTACATTTCCTTTGGGAGGAATCGCACGGATATTTGGAGGGAATTGTTCCTTGGGAAGCATCAATGGATTGTACAAGAGTATAGTTGATTTGGATGAAAACCAATATTTGACATCATCGGATGCTAAGAACAGGCTTGTTCATCCTTACATTGCCTCACAGTTAAAGTTAAGCAAGAGGATATTACCAATTCTTGATCCTGGTGTTCATGAATATTATGGTGATTTTAAAAGTTCTGCTAACAGTAATAATATAATTCATTTTCAAATTCTCAAATCTGGAATAGATTCGAGATATGTAACTAATTTGAGGAAAATGAATTTATCTAATGTGATGATTCCTGGTGATGGTTATGTAAAGGGTCCAGATATGTATTTTGCTACAGATGATTTGGTTGTAGCACCCTTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGTTTGAAAACTCCCCTTAATGATTTGAAGGAAAAAGTTGTCACTATTGGCATCAAGGAGGTAAATGCATAGTAAAATTCTTAATATAGTTTTAATCTTTACATTCATTATTTATAAATTGCTTATGTTTATCTTCTTGTCTTGTTGTAGTGTCTTAACATATTGAAGGCTTCTTTGACATCAACTTCTGCCCTAACAAATGGTTTGGCTCACATGTTAACTGAAGTTAAGGAGGAGAGATGA
Protein sequence

>MS.gene96850.t1

MFTEFGIKNHSSVKEVVLNVTKEKVLDLLKCSLFSKSTLTDLFLGKKPSLESSRFFSCDFKIVNDIQIILKLVIRKSDNKLLYAQGQQDFANLLLSFLTFPLGGIARIFGGNCSLGSINGLYKSIVDLDENQYLTSSDAKNRLVHPYIASQLKLSKRILPILDPGVHEYYGDFKSSANSNNIIHFQILKSGIDSRYVTNLRKMNLSNVMIPGDGYVKGPDMYFATDDLVVAPLTPISALGLLNRLKTPLNDLKEKVVTIGIKECLNILKASLTSTSALTNGLAHMLTEVKEER