AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055059

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055059.t1 MTR_7g066570 79.029 577 42 4 1 505 1 570 0.0 873
MS.gene055059.t1 MTR_7g012680 64.228 492 97 4 1 455 1 450 0.0 580
MS.gene055059.t1 MTR_7g058710 52.495 501 171 7 1 454 1 481 2.89e-164 474
MS.gene055059.t1 MTR_7g066260 53.155 523 165 9 6 484 7 493 4.50e-163 471
MS.gene055059.t1 MTR_7g066340 53.400 500 155 8 8 466 6 468 2.84e-157 456
MS.gene055059.t1 MTR_7g066350 55.647 487 135 10 10 451 5 455 3.79e-156 452
MS.gene055059.t1 MTR_7g066350 31.799 239 131 10 224 444 3 227 1.37e-14 76.3
MS.gene055059.t1 MTR_7g066580 55.531 452 173 8 20 452 1 443 4.63e-152 442
MS.gene055059.t1 MTR_1g041315 51.340 485 151 6 1 434 1 451 4.32e-150 438
MS.gene055059.t1 MTR_7g066400 49.254 469 165 9 10 447 8 434 1.65e-136 402
MS.gene055059.t1 MTR_2g029400 51.910 445 169 8 1 440 1 405 4.83e-135 397
MS.gene055059.t1 MTR_7g066290 50.102 491 143 9 2 450 3 433 1.66e-134 396
MS.gene055059.t1 MTR_7g066360 47.921 505 180 8 1 464 1 463 2.78e-130 387
MS.gene055059.t1 MTR_7g066310 48.837 473 162 8 11 473 4 406 7.46e-127 376
MS.gene055059.t1 MTR_7g066310 31.282 195 119 5 10 195 189 377 2.99e-11 65.9
MS.gene055059.t1 MTR_7g066430 42.394 493 228 6 15 457 5 491 1.60e-120 363
MS.gene055059.t1 MTR_7g058700 43.595 484 129 8 26 454 531 925 1.67e-111 352
MS.gene055059.t1 MTR_7g066410 39.922 511 225 11 14 450 10 512 2.46e-108 332
MS.gene055059.t1 MTR_7g063920 40.389 463 238 9 1 454 1 434 4.72e-102 313
MS.gene055059.t1 MTR_7g062280 37.876 499 247 8 6 454 4 489 8.40e-102 314
MS.gene055059.t1 MTR_7g063820 40.825 485 229 9 15 454 11 482 1.00e-100 311
MS.gene055059.t1 MTR_7g062300 38.163 490 236 11 6 449 4 472 1.90e-99 308
MS.gene055059.t1 MTR_7g063880 40.283 494 227 13 1 454 1 466 1.24e-98 305
MS.gene055059.t1 MTR_7g063900 40.400 500 235 13 2 454 3 486 7.07e-98 304
MS.gene055059.t1 MTR_7g063660 39.130 483 238 10 13 454 8 475 8.68e-97 301
MS.gene055059.t1 MTR_7g063840 38.046 481 251 9 7 454 5 471 2.71e-96 300
MS.gene055059.t1 MTR_7g063890 41.429 490 226 11 13 454 26 502 1.19e-93 294
MS.gene055059.t1 MTR_3g007740 38.266 473 219 8 13 450 8 442 1.63e-88 278
MS.gene055059.t1 MTR_7g066680 50.658 304 109 3 179 447 38 335 7.32e-86 268
MS.gene055059.t1 MTR_7g063830 36.383 481 222 10 8 450 4 438 3.24e-81 259
MS.gene055059.t1 MTR_3g065200 37.013 462 193 11 15 436 4 407 5.31e-81 259
MS.gene055059.t1 MTR_7g063670 35.510 490 224 13 10 454 13 455 1.30e-80 258
MS.gene055059.t1 MTR_7g066280 38.902 437 187 9 93 473 1 413 2.82e-79 254
MS.gene055059.t1 MTR_4g019310 34.686 493 242 12 17 446 11 486 3.62e-76 248
MS.gene055059.t1 MTR_7g066480 43.887 319 145 4 13 297 15 333 1.80e-73 239
MS.gene055059.t1 MTR_7g066480 54.878 82 37 0 371 452 342 423 2.32e-18 87.8
MS.gene055059.t1 MTR_7g066480 28.415 183 98 5 15 195 264 415 7.27e-12 67.8
MS.gene055059.t1 MTR_4g017830 34.185 509 258 13 6 449 4 500 2.19e-71 236
MS.gene055059.t1 MTR_4g017440 33.333 513 278 13 1 455 1 507 1.49e-70 234
MS.gene055059.t1 MTR_4g017610 34.908 487 255 14 7 447 6 476 2.19e-70 232
MS.gene055059.t1 MTR_4g017470 33.671 493 284 11 10 470 8 489 1.01e-69 231
MS.gene055059.t1 MTR_4g019340 35.234 491 247 10 5 438 25 501 4.16e-68 227
MS.gene055059.t1 MTR_7g066490 43.082 318 131 5 15 297 17 319 1.45e-64 215
MS.gene055059.t1 MTR_7g066490 47.706 109 56 1 344 452 302 409 1.39e-18 88.2
MS.gene055059.t1 MTR_7g066490 28.022 182 96 6 17 195 252 401 7.47e-11 64.3
MS.gene055059.t1 MTR_1g014060 54.327 208 57 2 23 193 9 215 7.68e-64 213
MS.gene055059.t1 MTR_1g014060 54.327 208 73 4 249 455 203 389 6.93e-56 192
MS.gene055059.t1 MTR_1g014060 27.184 206 134 7 239 436 12 209 2.25e-11 65.9
MS.gene055059.t1 MTR_4g017410 31.818 528 271 17 8 478 3 498 8.88e-64 216
MS.gene055059.t1 MTR_4g017550 31.906 467 242 15 41 446 18 469 2.89e-49 176
MS.gene055059.t1 MTR_4g017550 36.634 101 51 2 17 117 250 337 2.46e-11 66.2
MS.gene055059.t1 MTR_7g063720 39.496 238 120 4 219 454 15 230 6.30e-46 160
MS.gene055059.t1 MTR_7g063720 26.484 219 129 6 17 211 26 236 1.95e-14 73.6
MS.gene055059.t1 MTR_2g067310 53.521 142 52 3 25 161 58 190 3.09e-36 135
MS.gene055059.t1 MTR_7g063850 31.935 310 178 8 151 454 4 286 7.31e-35 132
MS.gene055059.t1 MTR_7g062270 51.181 127 58 1 1 127 1 123 5.61e-33 129
MS.gene055059.t1 MTR_8g023240 26.261 476 275 16 15 444 38 483 6.75e-31 126
MS.gene055059.t1 MTR_7g063690 34.601 263 122 11 1 254 1 222 2.27e-28 113
MS.gene055059.t1 MTR_7g100420 33.091 275 171 5 178 450 134 397 2.14e-26 111
MS.gene055059.t1 MTR_7g100420 53.086 81 32 2 15 89 40 120 1.00e-13 73.2
MS.gene055059.t1 MTR_8g445860 30.769 234 128 8 227 442 13 230 3.13e-24 101
MS.gene055059.t1 MTR_8g445860 29.694 229 113 6 15 200 14 237 3.48e-19 87.0
MS.gene055059.t1 MTR_7g066390 54.082 98 44 1 362 459 35 131 7.42e-24 98.2
MS.gene055059.t1 MTR_1g115440 29.060 234 115 4 13 200 10 238 1.42e-18 85.5
MS.gene055059.t1 MTR_0150s0010 27.615 239 122 5 8 200 4 237 2.76e-17 81.6
MS.gene055059.t1 MTR_7g063870 31.073 177 75 4 4 179 21 151 3.33e-17 82.0
MS.gene055059.t1 MTR_7g063760 49.296 71 35 1 385 454 1 71 6.79e-17 75.9
MS.gene055059.t1 MTR_4g019240 40.171 117 56 5 10 116 9 121 3.06e-16 77.4
MS.gene055059.t1 MTR_1g115455 27.193 228 119 4 15 200 10 232 6.50e-16 77.4
MS.gene055059.t1 MTR_1g115450 38.095 84 47 1 15 98 8 86 1.71e-13 68.2
MS.gene055059.t1 MTR_1g115435 28.638 213 113 8 17 202 10 210 5.09e-13 68.9
MS.gene055059.t1 MTR_1g115470 37.363 91 50 2 17 105 9 94 8.19e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055059.t1 AT5G01120 31.200 500 279 10 15 461 10 497 6.88e-63 213
MS.gene055059.t1 AT5G43240 30.667 525 267 11 15 467 10 509 2.08e-60 207
MS.gene055059.t1 AT5G43240 30.667 525 267 11 15 467 10 509 2.08e-60 207
MS.gene055059.t1 AT5G43240 30.667 525 267 11 15 467 10 509 2.08e-60 207
MS.gene055059.t1 AT3G09140 31.590 497 262 10 17 450 12 493 4.41e-57 198
MS.gene055059.t1 AT5G01140 30.526 475 254 8 17 450 12 451 1.14e-53 188
MS.gene055059.t1 AT5G01140 25.909 220 123 8 15 200 241 454 4.90e-11 65.5
MS.gene055059.t1 AT5G01130 31.435 474 248 10 15 450 10 444 1.02e-51 182
MS.gene055059.t1 AT3G09140 29.905 525 262 11 17 450 12 521 3.22e-51 182
MS.gene055059.t1 AT5G01150 31.134 485 266 10 17 450 12 479 2.15e-50 180
MS.gene055059.t1 AT5G01150 24.723 271 166 8 222 467 4 261 3.72e-13 72.0
MS.gene055059.t1 AT3G09110 33.762 311 165 4 17 289 12 319 1.40e-49 174
MS.gene055059.t1 AT5G37320 26.962 497 257 13 24 450 19 479 1.32e-38 147
MS.gene055059.t1 AT3G09120 30.449 312 171 4 13 281 5 313 2.46e-36 137
MS.gene055059.t1 AT3G09120 26.923 234 143 9 226 442 5 227 4.62e-11 64.3
MS.gene055059.t1 AT5G43240 29.945 364 204 9 130 467 27 365 2.65e-30 122

Find 91 sgRNAs with CRISPR-Local

Find 149 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTAACAGTTCTTATAAAT+TGG 0.162711 7.4:-37948895 None:intergenic
TCCTCCACCAAAGTAGATTT+TGG 0.204635 7.4:-37949076 None:intergenic
GAGGAAAGAGTTATCAAAAT+TGG 0.208695 7.4:+37948731 MS.gene055059:CDS
AATATTGAAGCAGTGAAATT+TGG 0.215494 7.4:+37947453 MS.gene055059:CDS
TTGGGATCAACCAATTTAAA+TGG 0.251681 7.4:-37948572 None:intergenic
GCTTCTTAACGTTGCCTTTA+GGG 0.252283 7.4:+37947400 MS.gene055059:CDS
GCTCTTTCGTAAAATAAAAT+TGG 0.265550 7.4:-37948063 None:intergenic
AGTCCCTCTACATGATTTAG+AGG 0.308031 7.4:+37948712 MS.gene055059:CDS
CAGCCTACTTAAAGCTTCAT+TGG 0.321652 7.4:+37948841 MS.gene055059:CDS
TAATCTTCCATGGAGTTTCT+TGG 0.323499 7.4:-37947561 None:intergenic
AGCTTCTTAACGTTGCCTTT+AGG 0.324562 7.4:+37947399 MS.gene055059:CDS
GGTTGATCCCAAGTCTTCTA+TGG 0.337630 7.4:+37948583 MS.gene055059:CDS
CAAAGGACCATCAATGTATA+TGG 0.337667 7.4:+37948622 MS.gene055059:CDS
AGTACTTCGTGTGCGAGAAT+TGG 0.338229 7.4:+37947628 MS.gene055059:CDS
TTTGGTTTAGCCCCATCTTC+AGG 0.343943 7.4:-37949058 None:intergenic
AACCATATTGAGTTTCTGAT+TGG 0.357882 7.4:+37948113 MS.gene055059:CDS
CAGCACCAATTGGTAATATC+TGG 0.361156 7.4:-37948430 None:intergenic
TAATGTTCGCTTGAGAGTTT+TGG 0.375097 7.4:+37947311 MS.gene055059:CDS
CATATACATTGATGGTCCTT+TGG 0.380788 7.4:-37948621 None:intergenic
TAGAAATGACATAGTAGAAA+TGG 0.386822 7.4:-37948678 None:intergenic
CCAATTTATAAGAACTGTTA+AGG 0.387413 7.4:+37948895 MS.gene055059:CDS
TCAACTTCTGCTCCTGAAGA+TGG 0.397724 7.4:+37949046 MS.gene055059:CDS
GTAAAATAAAATTGGTCAAA+GGG 0.398241 7.4:-37948055 None:intergenic
TTAAATCTACTTCAAAAGCT+TGG 0.402949 7.4:+37947840 MS.gene055059:CDS
TCCTGACCTTACAAAAGAAA+TGG 0.404064 7.4:+37948508 MS.gene055059:CDS
CTCCAATCAGAAACTCAATA+TGG 0.412808 7.4:-37948115 None:intergenic
GTACTTCGTGTGCGAGAATT+GGG 0.414321 7.4:+37947629 MS.gene055059:CDS
TAGTAATACCTGTATGTTAC+GGG 0.419068 7.4:-37949110 None:intergenic
CAACTTCTGCTCCTGAAGAT+GGG 0.421746 7.4:+37949047 MS.gene055059:CDS
AGGGACTATTGCAAGATTTG+TGG 0.426435 7.4:+37947419 MS.gene055059:CDS
CAAATTCTGTTTGTCGAAGC+AGG 0.430694 7.4:+37948200 MS.gene055059:CDS
GTTTCAAATTATCAACAGAT+TGG 0.441849 7.4:-37948085 None:intergenic
TCTGTCACCATATACATTGA+TGG 0.453671 7.4:-37948629 None:intergenic
CGCAAGAAAGCAGCACCAAT+TGG 0.454787 7.4:-37948440 None:intergenic
GGTTCTTGAGTTCAAATTGT+GGG 0.454868 7.4:-37948409 None:intergenic
CATATGCAACACTCCTCCTA+AGG 0.479612 7.4:-37948264 None:intergenic
CTATATTTAGTTTCCGCTGT+CGG 0.483334 7.4:-37947587 None:intergenic
GGCTAAACCAAAATCTACTT+TGG 0.484146 7.4:+37949069 MS.gene055059:CDS
CGTAAAATAAAATTGGTCAA+AGG 0.486886 7.4:-37948056 None:intergenic
GGAGTGTTGCATATGCTTCA+AGG 0.493604 7.4:+37948272 MS.gene055059:CDS
CGAGACTATTGATGCTATTG+AGG 0.494678 7.4:+37947866 MS.gene055059:CDS
ATTCCAATGAAGCTTTAAGT+AGG 0.497354 7.4:-37948844 None:intergenic
ATAGTAATACCTGTATGTTA+CGG 0.499348 7.4:-37949111 None:intergenic
AAAGTTGTGTATGCTGAGGC+TGG 0.508934 7.4:+37947351 MS.gene055059:CDS
TTTCTAACCTTCCCCTTAGG+AGG 0.508980 7.4:+37948251 MS.gene055059:CDS
TCAGACATTAAATATATGTC+CGG 0.511445 7.4:-37948350 None:intergenic
ACCAAAATCTACTTTGGTGG+AGG 0.521894 7.4:+37949075 MS.gene055059:CDS
AAGAACCAGATATTACCAAT+TGG 0.527915 7.4:+37948425 MS.gene055059:CDS
CTGTCGGCAGTAATCTTCCA+TGG 0.528612 7.4:-37947571 None:intergenic
TTTGTGCTCACTTACTTGCA+AGG 0.529997 7.4:+37947524 MS.gene055059:CDS
TGTTGACATCAACAAGAAAG+AGG 0.533984 7.4:+37947896 MS.gene055059:CDS
GCGCCTGCCCCGTAACATAC+AGG 0.534922 7.4:+37949102 MS.gene055059:CDS
TTCAACTGATTCAGTCGGAA+TGG 0.541773 7.4:-37947280 None:intergenic
GGACATATATTTAATGTCTG+AGG 0.545390 7.4:+37948352 MS.gene055059:CDS
TGGTTCTTGAGTTCAAATTG+TGG 0.546701 7.4:-37948410 None:intergenic
AATCTTGCAATAGTCCCTAA+AGG 0.549076 7.4:-37947414 None:intergenic
GATCTTCGCAAAGCCAATGC+AGG 0.551154 7.4:-37949746 None:intergenic
ATATGCAACACTCCTCCTAA+GGG 0.551461 7.4:-37948263 None:intergenic
GAATTGGGATTGTAGAAGAA+AGG 0.552800 7.4:+37947644 MS.gene055059:CDS
TATTGCAAGATTTGTGGCTA+AGG 0.554119 7.4:+37947425 MS.gene055059:CDS
AGTTATCAAAATTGGCGTCA+AGG 0.564487 7.4:+37948739 MS.gene055059:CDS
GACATATATTTAATGTCTGA+GGG 0.566806 7.4:+37948353 MS.gene055059:CDS
AGAGAACAAGACTCCTGCAT+TGG 0.566936 7.4:+37949733 MS.gene055059:CDS
TAAACCAAAATCTACTTTGG+TGG 0.568709 7.4:+37949072 MS.gene055059:CDS
TCAAATTGTGGGGCAATGAG+AGG 0.573796 7.4:-37948398 None:intergenic
AACTTCTGCTCCTGAAGATG+GGG 0.581248 7.4:+37949048 MS.gene055059:CDS
TGGCTTTGCGAAGATCAACT+AGG 0.584230 7.4:+37949753 MS.gene055059:CDS
CTTTCCTCTAAATCATGTAG+AGG 0.584914 7.4:-37948716 None:intergenic
ACTTGTTCAACTGATTCAGT+CGG 0.589901 7.4:-37947285 None:intergenic
GTTCTTGAGTTCAAATTGTG+GGG 0.592442 7.4:-37948408 None:intergenic
CAACACTCCTCCTAAGGGGA+AGG 0.595804 7.4:-37948258 None:intergenic
ATACCTGTATGTTACGGGGC+AGG 0.595942 7.4:-37949105 None:intergenic
CTCGCACACGAAGTACTGCA+AGG 0.596798 7.4:-37947622 None:intergenic
TAAAATAAAATTGGTCAAAG+GGG 0.605375 7.4:-37948054 None:intergenic
ATAGTAGAAATGGACGACAT+TGG 0.606118 7.4:-37948668 None:intergenic
GTCTATCCTCATCAGATGGT+AGG 0.607538 7.4:-37948139 None:intergenic
ACTGCAACCAAGAAACTCCA+TGG 0.607950 7.4:+37947554 MS.gene055059:CDS
GCAAAATCATCATATGCCAA+AGG 0.610317 7.4:+37948605 MS.gene055059:CDS
TGTGTATGCTGAGGCTGGGA+AGG 0.614514 7.4:+37947356 MS.gene055059:CDS
ATTTGTCTATCCTCATCAGA+TGG 0.623409 7.4:-37948143 None:intergenic
TTTCCTCTAAATCATGTAGA+GGG 0.629418 7.4:-37948715 None:intergenic
TGGAGACCTACCATCTGATG+AGG 0.632344 7.4:+37948133 MS.gene055059:CDS
TGGAAGATTACTGCCGACAG+CGG 0.638631 7.4:+37947574 MS.gene055059:CDS
ACTATGATTACACAAGGCAG+AGG 0.642345 7.4:+37948483 MS.gene055059:CDS
AAGTTGTGTATGCTGAGGCT+GGG 0.646725 7.4:+37947352 MS.gene055059:CDS
TCGCACACGAAGTACTGCAA+GGG 0.658925 7.4:-37947621 None:intergenic
TATGCAACACTCCTCCTAAG+GGG 0.688986 7.4:-37948262 None:intergenic
TATCAAAATTGGCGTCAAGG+AGG 0.703000 7.4:+37948742 MS.gene055059:CDS
AGTAATACCTGTATGTTACG+GGG 0.732614 7.4:-37949109 None:intergenic
ATACTTACTATGATTACACA+AGG 0.733669 7.4:+37948477 MS.gene055059:CDS
GAACAAAGTTGTGTATGCTG+AGG 0.744300 7.4:+37947347 MS.gene055059:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATTTGATTAACAATAT+AGG + chr7.4:37949578-37949597 MS.gene055059:intron 10.0%
!! AAAGAAATGAAAAATTGTTT+AGG - chr7.4:37949279-37949298 None:intergenic 15.0%
!! TTTCTATATTGAAAAACTTT+GGG - chr7.4:37947743-37947762 None:intergenic 15.0%
!!! AAGTTTTTCAATATAGAAAA+TGG + chr7.4:37947744-37947763 MS.gene055059:intron 15.0%
!!! TTTTCTATATTGAAAAACTT+TGG - chr7.4:37947744-37947763 None:intergenic 15.0%
!! AAAAAATGCACCATTTAAAT+TGG + chr7.4:37948562-37948581 MS.gene055059:CDS 20.0%
!! ACTTGATAAGGAAAATATTT+AGG - chr7.4:37948931-37948950 None:intergenic 20.0%
!! GTAAAATAAAATTGGTCAAA+GGG - chr7.4:37948058-37948077 None:intergenic 20.0%
!! TAAAATAAAATTGGTCAAAG+GGG - chr7.4:37948057-37948076 None:intergenic 20.0%
!!! AATAAACCATTTCTTTTGTA+AGG - chr7.4:37948517-37948536 None:intergenic 20.0%
!!! ACAATTTTTCATTTCTTTCA+TGG + chr7.4:37949281-37949300 MS.gene055059:intron 20.0%
!!! ATTAACAATATAGGTAGTTT+TGG + chr7.4:37949587-37949606 MS.gene055059:intron 20.0%
!!! ATTTCTTATTCGATTTGTAT+AGG + chr7.4:37947995-37948014 MS.gene055059:intron 20.0%
!!! TCATTATGTTTTTTGAGATT+AGG + chr7.4:37949314-37949333 MS.gene055059:intron 20.0%
! AATATTGAAGCAGTGAAATT+TGG + chr7.4:37947453-37947472 MS.gene055059:CDS 25.0%
! AGAGTAATCTAAACTTGATA+AGG - chr7.4:37948943-37948962 None:intergenic 25.0%
! ATACTTACTATGATTACACA+AGG + chr7.4:37948477-37948496 MS.gene055059:CDS 25.0%
! ATAGTAATACCTGTATGTTA+CGG - chr7.4:37949114-37949133 None:intergenic 25.0%
! ATATATGAAGTGTGAAGTAA+AGG - chr7.4:37949423-37949442 None:intergenic 25.0%
! ATTTATAAGAACTGTTAAGG+TGG + chr7.4:37948898-37948917 MS.gene055059:intron 25.0%
! CATACAGGTATTACTATTTA+TGG + chr7.4:37949117-37949136 MS.gene055059:intron 25.0%
! CCAATTTATAAGAACTGTTA+AGG + chr7.4:37948895-37948914 MS.gene055059:CDS 25.0%
! CCTTAACAGTTCTTATAAAT+TGG - chr7.4:37948898-37948917 None:intergenic 25.0%
! CGTAAAATAAAATTGGTCAA+AGG - chr7.4:37948059-37948078 None:intergenic 25.0%
! GACATATATTTAATGTCTGA+GGG + chr7.4:37948353-37948372 MS.gene055059:CDS 25.0%
! GCTCTTTCGTAAAATAAAAT+TGG - chr7.4:37948066-37948085 None:intergenic 25.0%
! GTTTCAAATTATCAACAGAT+TGG - chr7.4:37948088-37948107 None:intergenic 25.0%
! TAGAAATGACATAGTAGAAA+TGG - chr7.4:37948681-37948700 None:intergenic 25.0%
! TATCATCAACAAAAGTAAGT+TGG - chr7.4:37949012-37949031 None:intergenic 25.0%
! TCAGACATTAAATATATGTC+CGG - chr7.4:37948353-37948372 None:intergenic 25.0%
! TTAAATCTACTTCAAAAGCT+TGG + chr7.4:37947840-37947859 MS.gene055059:CDS 25.0%
!! ACTTTTTGTTACATGTTACA+GGG + chr7.4:37948815-37948834 MS.gene055059:intron 25.0%
!! TGTCAGTATCTATATCTTTT+TGG + chr7.4:37949672-37949691 MS.gene055059:intron 25.0%
!!! TACTTTTTGTTACATGTTAC+AGG + chr7.4:37948814-37948833 MS.gene055059:intron 25.0%
!!! TATAGAAAATGGTTTTGTGA+AGG + chr7.4:37947755-37947774 MS.gene055059:intron 25.0%
!!! TATCTATATCTTTTTGGAAG+AGG + chr7.4:37949678-37949697 MS.gene055059:intron 25.0%
!!! TTTTTTGCAATATTGATGCA+TGG - chr7.4:37949194-37949213 None:intergenic 25.0%
AACCATATTGAGTTTCTGAT+TGG + chr7.4:37948113-37948132 MS.gene055059:CDS 30.0%
AAGAACCAGATATTACCAAT+TGG + chr7.4:37948425-37948444 MS.gene055059:CDS 30.0%
AGGTTAGTATATCTTTAGCA+CGG - chr7.4:37948987-37949006 None:intergenic 30.0%
ATACATAACAATAGCAACAC+TGG - chr7.4:37949638-37949657 None:intergenic 30.0%
ATTACTCTCTTCTCCATAAT+AGG + chr7.4:37948955-37948974 MS.gene055059:intron 30.0%
GAGGAAAGAGTTATCAAAAT+TGG + chr7.4:37948731-37948750 MS.gene055059:CDS 30.0%
GGACATATATTTAATGTCTG+AGG + chr7.4:37948352-37948371 MS.gene055059:CDS 30.0%
TAAACCAAAATCTACTTTGG+TGG + chr7.4:37949072-37949091 MS.gene055059:CDS 30.0%
TAGTAATACCTGTATGTTAC+GGG - chr7.4:37949113-37949132 None:intergenic 30.0%
TTACTCTCTTCTCCATAATA+GGG + chr7.4:37948956-37948975 MS.gene055059:intron 30.0%
TTGGGATCAACCAATTTAAA+TGG - chr7.4:37948575-37948594 None:intergenic 30.0%
TTTCCTCTAAATCATGTAGA+GGG - chr7.4:37948718-37948737 None:intergenic 30.0%
! AAACTTGCTCCAAAAACATT+AGG - chr7.4:37947822-37947841 None:intergenic 30.0%
! AACACTGGTATTTTCAATTC+AGG + chr7.4:37949706-37949725 MS.gene055059:intron 30.0%
! TGTGTTTTGCCTAATGTTTT+TGG + chr7.4:37947810-37947829 MS.gene055059:CDS 30.0%
!! ATTCCAATGAAGCTTTAAGT+AGG - chr7.4:37948847-37948866 None:intergenic 30.0%
!! TCAACAAAAGTAAGTTGGTT+AGG - chr7.4:37949007-37949026 None:intergenic 30.0%
!! TCAACATCTGCTTTGAAAAA+TGG + chr7.4:37948866-37948885 MS.gene055059:CDS 30.0%
AATCTTGCAATAGTCCCTAA+AGG - chr7.4:37947417-37947436 None:intergenic 35.0%
AGGAACCAAAAATGCTATTG+TGG + chr7.4:37947693-37947712 MS.gene055059:intron 35.0%
AGTAATACCTGTATGTTACG+GGG - chr7.4:37949112-37949131 None:intergenic 35.0%
AGTTATCAAAATTGGCGTCA+AGG + chr7.4:37948739-37948758 MS.gene055059:CDS 35.0%
ATAGTAGAAATGGACGACAT+TGG - chr7.4:37948671-37948690 None:intergenic 35.0%
ATTTGTCTATCCTCATCAGA+TGG - chr7.4:37948146-37948165 None:intergenic 35.0%
CAAAGGACCATCAATGTATA+TGG + chr7.4:37948622-37948641 MS.gene055059:CDS 35.0%
CTCCAATCAGAAACTCAATA+TGG - chr7.4:37948118-37948137 None:intergenic 35.0%
CTTTCCTCTAAATCATGTAG+AGG - chr7.4:37948719-37948738 None:intergenic 35.0%
GAATTGGGATTGTAGAAGAA+AGG + chr7.4:37947644-37947663 MS.gene055059:CDS 35.0%
GATTGTAGAAGAAAGGTAAG+TGG + chr7.4:37947651-37947670 MS.gene055059:intron 35.0%
GCAAAATCATCATATGCCAA+AGG + chr7.4:37948605-37948624 MS.gene055059:CDS 35.0%
GGAACCAAAAATGCTATTGT+GGG + chr7.4:37947694-37947713 MS.gene055059:intron 35.0%
GGCTAAACCAAAATCTACTT+TGG + chr7.4:37949069-37949088 MS.gene055059:CDS 35.0%
GGTTCCTAAAAAAGCTCAAA+AGG - chr7.4:37947680-37947699 None:intergenic 35.0%
GGTTCTTGAGTTCAAATTGT+GGG - chr7.4:37948412-37948431 None:intergenic 35.0%
GTTCTTGAGTTCAAATTGTG+GGG - chr7.4:37948411-37948430 None:intergenic 35.0%
TAACCGAATCCTCTATTTGA+TGG + chr7.4:37949166-37949185 MS.gene055059:intron 35.0%
TAATCTTCCATGGAGTTTCT+TGG - chr7.4:37947564-37947583 None:intergenic 35.0%
TATTGCAAGATTTGTGGCTA+AGG + chr7.4:37947425-37947444 MS.gene055059:CDS 35.0%
TCCTGACCTTACAAAAGAAA+TGG + chr7.4:37948508-37948527 MS.gene055059:CDS 35.0%
TCTGTCACCATATACATTGA+TGG - chr7.4:37948632-37948651 None:intergenic 35.0%
TGAGACATCATTTGAACTGT+CGG - chr7.4:37949393-37949412 None:intergenic 35.0%
TGGTTCTTGAGTTCAAATTG+TGG - chr7.4:37948413-37948432 None:intergenic 35.0%
TGTTGACATCAACAAGAAAG+AGG + chr7.4:37947896-37947915 MS.gene055059:CDS 35.0%
! ACCATTTCTTTTGTAAGGTC+AGG - chr7.4:37948512-37948531 None:intergenic 35.0%
! ACTTGTTCAACTGATTCAGT+CGG - chr7.4:37947288-37947307 None:intergenic 35.0%
! CATATACATTGATGGTCCTT+TGG - chr7.4:37948624-37948643 None:intergenic 35.0%
! CTATATTTAGTTTCCGCTGT+CGG - chr7.4:37947590-37947609 None:intergenic 35.0%
! CTTTCCCACAATAGCATTTT+TGG - chr7.4:37947701-37947720 None:intergenic 35.0%
! GATTTTGCCATAGAAGACTT+GGG - chr7.4:37948593-37948612 None:intergenic 35.0%
! TAATGTTCGCTTGAGAGTTT+TGG + chr7.4:37947311-37947330 MS.gene055059:CDS 35.0%
! TGATTTTGCCATAGAAGACT+TGG - chr7.4:37948594-37948613 None:intergenic 35.0%
! TTTTCGTCTTTAAGCAGCAT+TGG + chr7.4:37948296-37948315 MS.gene055059:CDS 35.0%
!! GATGCCTTTTGAGCTTTTTT+AGG + chr7.4:37947673-37947692 MS.gene055059:intron 35.0%
!! TGTTGATGATATGAACATGC+AGG + chr7.4:37949021-37949040 MS.gene055059:intron 35.0%
!!! AGAAAGAGGCATGCTTTTTT+CGG + chr7.4:37947910-37947929 MS.gene055059:intron 35.0%
ACCAAAATCTACTTTGGTGG+AGG + chr7.4:37949075-37949094 MS.gene055059:CDS 40.0%
ACTATGATTACACAAGGCAG+AGG + chr7.4:37948483-37948502 MS.gene055059:CDS 40.0%
ACTCCAATATGTCAAACCCT+TGG + chr7.4:37949240-37949259 MS.gene055059:intron 40.0%
AGCACGGAATAACCCTATTA+TGG - chr7.4:37948971-37948990 None:intergenic 40.0%
AGCTTCTTAACGTTGCCTTT+AGG + chr7.4:37947399-37947418 MS.gene055059:CDS 40.0%
AGGAAGCAAAAAGTCACCAA+GGG - chr7.4:37949259-37949278 None:intergenic 40.0%
AGGGACTATTGCAAGATTTG+TGG + chr7.4:37947419-37947438 MS.gene055059:CDS 40.0%
AGTCCCTCTACATGATTTAG+AGG + chr7.4:37948712-37948731 MS.gene055059:CDS 40.0%
ATATGCAACACTCCTCCTAA+GGG - chr7.4:37948266-37948285 None:intergenic 40.0%
CAAATTCTGTTTGTCGAAGC+AGG + chr7.4:37948200-37948219 MS.gene055059:CDS 40.0%
CAGCCTACTTAAAGCTTCAT+TGG + chr7.4:37948841-37948860 MS.gene055059:CDS 40.0%
CGAGACTATTGATGCTATTG+AGG + chr7.4:37947866-37947885 MS.gene055059:CDS 40.0%
GAACAAAGTTGTGTATGCTG+AGG + chr7.4:37947347-37947366 MS.gene055059:CDS 40.0%
GCAACGATGAACACTAACAA+AGG + chr7.4:37949531-37949550 MS.gene055059:intron 40.0%
GCTCCATCAAATAGAGGATT+CGG - chr7.4:37949172-37949191 None:intergenic 40.0%
GCTTCTTAACGTTGCCTTTA+GGG + chr7.4:37947400-37947419 MS.gene055059:CDS 40.0%
TAGGAAGCAAAAAGTCACCA+AGG - chr7.4:37949260-37949279 None:intergenic 40.0%
TATCAAAATTGGCGTCAAGG+AGG + chr7.4:37948742-37948761 MS.gene055059:CDS 40.0%
TCACCAAGGGTTTGACATAT+TGG - chr7.4:37949246-37949265 None:intergenic 40.0%
TTTGTGCTCACTTACTTGCA+AGG + chr7.4:37947524-37947543 MS.gene055059:CDS 40.0%
! AGTTTTCTAACCTTCCCCTT+AGG + chr7.4:37948248-37948267 MS.gene055059:CDS 40.0%
! CAGCACCAATTGGTAATATC+TGG - chr7.4:37948433-37948452 None:intergenic 40.0%
! TCCTCCACCAAAGTAGATTT+TGG - chr7.4:37949079-37949098 None:intergenic 40.0%
! TTCAACTGATTCAGTCGGAA+TGG - chr7.4:37947283-37947302 None:intergenic 40.0%
!! GAGCTTTTCTGATTTGAGTC+CGG + chr7.4:37948331-37948350 MS.gene055059:CDS 40.0%
AAAGTTGTGTATGCTGAGGC+TGG + chr7.4:37947351-37947370 MS.gene055059:CDS 45.0%
AACTTCTGCTCCTGAAGATG+GGG + chr7.4:37949048-37949067 MS.gene055059:CDS 45.0%
AAGTTGTGTATGCTGAGGCT+GGG + chr7.4:37947352-37947371 MS.gene055059:CDS 45.0%
ACTGCAACCAAGAAACTCCA+TGG + chr7.4:37947554-37947573 MS.gene055059:CDS 45.0%
AGAGAACAAGACTCCTGCAT+TGG + chr7.4:37949733-37949752 MS.gene055059:CDS 45.0%
AGTACTTCGTGTGCGAGAAT+TGG + chr7.4:37947628-37947647 MS.gene055059:CDS 45.0%
CAACTTCTGCTCCTGAAGAT+GGG + chr7.4:37949047-37949066 MS.gene055059:CDS 45.0%
CATATGCAACACTCCTCCTA+AGG - chr7.4:37948267-37948286 None:intergenic 45.0%
GGTTGATCCCAAGTCTTCTA+TGG + chr7.4:37948583-37948602 MS.gene055059:CDS 45.0%
GTACTTCGTGTGCGAGAATT+GGG + chr7.4:37947629-37947648 MS.gene055059:CDS 45.0%
GTCTATCCTCATCAGATGGT+AGG - chr7.4:37948142-37948161 None:intergenic 45.0%
TATGCAACACTCCTCCTAAG+GGG - chr7.4:37948265-37948284 None:intergenic 45.0%
TCAAATTGTGGGGCAATGAG+AGG - chr7.4:37948401-37948420 None:intergenic 45.0%
TCAACTTCTGCTCCTGAAGA+TGG + chr7.4:37949046-37949065 MS.gene055059:CDS 45.0%
TGCATGGCTCCATCAAATAG+AGG - chr7.4:37949178-37949197 None:intergenic 45.0%
TTGGAAGAGGAAGCTAACAC+TGG + chr7.4:37949691-37949710 MS.gene055059:intron 45.0%
TTTCTAACCTTCCCCTTAGG+AGG + chr7.4:37948251-37948270 MS.gene055059:CDS 45.0%
! TGGCTTTGCGAAGATCAACT+AGG + chr7.4:37949753-37949772 MS.gene055059:CDS 45.0%
! TTTGGTTTAGCCCCATCTTC+AGG - chr7.4:37949061-37949080 None:intergenic 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG + chr7.4:37948272-37948291 MS.gene055059:CDS 45.0%
!! TGTTCGCTTGAGAGTTTTGG+TGG + chr7.4:37947314-37947333 MS.gene055059:CDS 45.0%
ATACCTGTATGTTACGGGGC+AGG - chr7.4:37949108-37949127 None:intergenic 50.0%
CGCAAGAAAGCAGCACCAAT+TGG - chr7.4:37948443-37948462 None:intergenic 50.0%
CTGTCGGCAGTAATCTTCCA+TGG - chr7.4:37947574-37947593 None:intergenic 50.0%
GATCTTCGCAAAGCCAATGC+AGG - chr7.4:37949749-37949768 None:intergenic 50.0%
TGGAAGATTACTGCCGACAG+CGG + chr7.4:37947574-37947593 MS.gene055059:CDS 50.0%
TGGAGACCTACCATCTGATG+AGG + chr7.4:37948133-37948152 MS.gene055059:CDS 50.0%
!! TCGCACACGAAGTACTGCAA+GGG - chr7.4:37947624-37947643 None:intergenic 50.0%
CAACACTCCTCCTAAGGGGA+AGG - chr7.4:37948261-37948280 None:intergenic 55.0%
TGTGTATGCTGAGGCTGGGA+AGG + chr7.4:37947356-37947375 MS.gene055059:CDS 55.0%
!! CTCGCACACGAAGTACTGCA+AGG - chr7.4:37947625-37947644 None:intergenic 55.0%
GCGCCTGCCCCGTAACATAC+AGG + chr7.4:37949102-37949121 MS.gene055059:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 37947273 37949802 37947273 ID=MS.gene055059
chr7.4 mRNA 37947273 37949802 37947273 ID=MS.gene055059.t1;Parent=MS.gene055059
chr7.4 exon 37947273 37947665 37947273 ID=MS.gene055059.t1.exon1;Parent=MS.gene055059.t1
chr7.4 CDS 37947273 37947665 37947273 ID=cds.MS.gene055059.t1;Parent=MS.gene055059.t1
chr7.4 exon 37947777 37947917 37947777 ID=MS.gene055059.t1.exon2;Parent=MS.gene055059.t1
chr7.4 CDS 37947777 37947917 37947777 ID=cds.MS.gene055059.t1;Parent=MS.gene055059.t1
chr7.4 exon 37948017 37948763 37948017 ID=MS.gene055059.t1.exon3;Parent=MS.gene055059.t1
chr7.4 CDS 37948017 37948763 37948017 ID=cds.MS.gene055059.t1;Parent=MS.gene055059.t1
chr7.4 exon 37948836 37948916 37948836 ID=MS.gene055059.t1.exon4;Parent=MS.gene055059.t1
chr7.4 CDS 37948836 37948916 37948836 ID=cds.MS.gene055059.t1;Parent=MS.gene055059.t1
chr7.4 exon 37949043 37949123 37949043 ID=MS.gene055059.t1.exon5;Parent=MS.gene055059.t1
chr7.4 CDS 37949043 37949123 37949043 ID=cds.MS.gene055059.t1;Parent=MS.gene055059.t1
chr7.4 exon 37949728 37949802 37949728 ID=MS.gene055059.t1.exon6;Parent=MS.gene055059.t1
chr7.4 CDS 37949728 37949802 37949728 ID=cds.MS.gene055059.t1;Parent=MS.gene055059.t1
Gene Sequence

>MS.gene055059

ATGGCTTCCATTCCGACTGAATCAGTTGAACAAGTTGATAATGTTCGCTTGAGAGTTTTGGTGGACAAAGAAAAGAACAAAGTTGTGTATGCTGAGGCTGGGAAGGATTTCGTTGATGCTCTCTTCAGCTTCTTAACGTTGCCTTTAGGGACTATTGCAAGATTTGTGGCTAAGGACTCAAATATTGAAGCAGTGAAATTTGGCAGCATTAGCTCATTGTATCAAAGCGTGTCAAATCTTGATAAACAATATTTGTGCTCACTTACTTGCAAGGAAATGCTACTGCAACCAAGAAACTCCATGGAAGATTACTGCCGACAGCGGAAACTAAATATAGACGACACAGAACCCTTGCAGTACTTCGTGTGCGAGAATTGGGATTGTAGAAGAAAGGTAAGTGGATGCCTTTTGAGCTTTTTTAGGAACCAAAAATGCTATTGTGGGAAAGTAATGAACAGAGAAGTATTCCCAAAGTTTTTCAATATAGAAAATGGTTTTGTGAAGGAAAATGCTACTTTTATGATTTGTGATGATCTTTGTGTTTTGCCTAATGTTTTTGGAGCAAGTTTAAATCTACTTCAAAAGCTTGGAGTCGAGACTATTGATGCTATTGAGGAACAAACTGTTGACATCAACAAGAAAGAGGCATGCTTTTTTCGGCTTCTATATCATCTACATTACATATATCATCTTTGAATATTGATTATTTTTTCTAATTGAATATTTCTTATTCGATTTGTATAGGTAGTTGATCTTCTTAAGTTATCATTAATCTCAATGACCCCTTTGACCAATTTTATTTTACGAAAGAGCCAATCTGTTGATAATTTGAAACTAAGAAACCATATTGAGTTTCTGATTGGAGACCTACCATCTGATGAGGATAGACAAATGTCTGTGAAAGTGACATTAAGAAAATCGAATGAACAAATTCTGTTTGTCGAAGCAGGAGATGATTTTATTGACTTTGTTTTTAGTTTTCTAACCTTCCCCTTAGGAGGAGTGTTGCATATGCTTCAAGGATTTTCGTCTTTAAGCAGCATTGGTAACTTGTACAAGAGCTTTTCTGATTTGAGTCCGGACATATATTTAATGTCTGAGGGACTCAAAGACAAACTATGTAAGCCTCTCATTGCCCCACAATTTGAACTCAAGAACCAGATATTACCAATTGGTGCTGCTTTCTTGCGTGTGAATTATTCTCATACTTACTATGATTACACAAGGCAGAGGTATCCTGACCTTACAAAAGAAATGGTTTATTCTAACTATAATAGAATTTATGAAGAAAAAAATGCACCATTTAAATTGGTTGATCCCAAGTCTTCTATGGCAAAATCATCATATGCCAAAGGACCATCAATGTATATGGTGACAGACGACTTGTGTGTGAGTCCAATGTCGTCCATTTCTACTATGTCATTTCTAAAAAGATTTAAAGTCCCTCTACATGATTTAGAGGAAAGAGTTATCAAAATTGGCGTCAAGGAGGTATGCACATGTTCATCTTGTAATTGTTTTTTATTTGCTAACACTACACTTACTTTTTGTTACATGTTACAGGGTCTCAGCCTACTTAAAGCTTCATTGGAATCAACATCTGCTTTGAAAAATGGTCTCAGCCAATTTATAAGAACTGTTAAGGTGGAGAAATGCCTAAATATTTTCCTTATCAAGTTTAGATTACTCTCTTCTCCATAATAGGGTTATTCCGTGCTAAAGATATACTAACCTAACCAACTTACTTTTGTTGATGATATGAACATGCAGGTCTCAACTTCTGCTCCTGAAGATGGGGCTAAACCAAAATCTACTTTGGTGGAGGAATTGCGCCTGCCCCGTAACATACAGGTATTACTATTTATGGTTTAATTACATCTTTGTTGATATGTTTAACCGAATCCTCTATTTGATGGAGCCATGCATCAATATTGCAAAAAAGTTTAGTTTGTGACTCAATACATAATACTCCAATATGTCAAACCCTTGGTGACTTTTTGCTTCCTAAACAATTTTTCATTTCTTTCATGGATGTTTACATTCATTATGTTTTTTGAGATTAGGCGTGTCTTCATGTCTTACATGCATCAGTATACGACACTTGCATTCACACAAGTCCGACAGTTCAAATGATGTCTCATTTTTTTCCTTTACTTCACACTTCATATATTCTTTAGACACATCTCTTTAGACATATCTCTATGAGATTTAACGATGTGTATAAGCAACAATACTATGAGATTTAAAGATGCGTAGAAGCAACGATGAACACTAACAAAGGTTGAAAACACATTAAATACATGTGTATAATTTGATTAACAATATAGGTAGTTTTGGAATAATGTTTGTCTTTTATTTAGTGCCAGTGTTGCTATTGTTATGTATTTGTAGTGTTGATATGTCAGTATCTATATCTTTTTGGAAGAGGAAGCTAACACTGGTATTTTCAATTCAGGAAAAAGAGAACAAGACTCCTGCATTGGCTTTGCGAAGATCAACTAGGAAACGCAAAGCTAGCGATCATGCTTGA
Protein sequence

>MS.gene055059.t1

MASIPTESVEQVDNVRLRVLVDKEKNKVVYAEAGKDFVDALFSFLTLPLGTIARFVAKDSNIEAVKFGSISSLYQSVSNLDKQYLCSLTCKEMLLQPRNSMEDYCRQRKLNIDDTEPLQYFVCENWDCRRKENATFMICDDLCVLPNVFGASLNLLQKLGVETIDAIEEQTVDINKKEVVDLLKLSLISMTPLTNFILRKSQSVDNLKLRNHIEFLIGDLPSDEDRQMSVKVTLRKSNEQILFVEAGDDFIDFVFSFLTFPLGGVLHMLQGFSSLSSIGNLYKSFSDLSPDIYLMSEGLKDKLCKPLIAPQFELKNQILPIGAAFLRVNYSHTYYDYTRQRYPDLTKEMVYSNYNRIYEEKNAPFKLVDPKSSMAKSSYAKGPSMYMVTDDLCVSPMSSISTMSFLKRFKVPLHDLEERVIKIGVKEGLSLLKASLESTSALKNGLSQFIRTVKVSTSAPEDGAKPKSTLVEELRLPRNIQEKENKTPALALRRSTRKRKASDHA