AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene77226

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77226.t1 MTR_7g058710 81.452 496 73 2 1 489 1 484 0.0 812
MS.gene77226.t1 MTR_7g058700 64.682 487 62 6 24 489 531 928 0.0 580
MS.gene77226.t1 MTR_7g066570 60.204 490 177 7 4 486 6 484 0.0 555
MS.gene77226.t1 MTR_7g012680 56.795 493 168 9 1 489 1 452 0.0 514
MS.gene77226.t1 MTR_7g066260 53.908 499 176 12 1 482 1 462 3.54e-160 463
MS.gene77226.t1 MTR_7g066580 52.229 471 179 6 18 475 1 438 3.29e-158 457
MS.gene77226.t1 MTR_7g066340 52.024 494 184 9 1 482 1 453 7.65e-157 454
MS.gene77226.t1 MTR_7g066350 51.724 493 166 10 8 479 5 446 1.31e-152 443
MS.gene77226.t1 MTR_2g029400 52.500 480 141 7 2 472 4 405 5.45e-151 437
MS.gene77226.t1 MTR_1g041315 50.102 491 174 10 3 466 5 451 1.14e-146 429
MS.gene77226.t1 MTR_7g066290 48.387 496 179 9 1 482 1 433 8.26e-131 386
MS.gene77226.t1 MTR_7g066430 44.841 504 242 12 12 488 4 498 1.47e-129 385
MS.gene77226.t1 MTR_7g066400 44.578 498 191 10 1 478 1 433 2.01e-126 375
MS.gene77226.t1 MTR_7g066360 47.400 500 190 12 2 482 4 449 2.09e-122 366
MS.gene77226.t1 MTR_7g066410 42.353 510 246 10 13 482 11 512 5.44e-122 367
MS.gene77226.t1 MTR_7g066410 30.870 230 138 7 12 227 284 506 1.33e-16 82.8
MS.gene77226.t1 MTR_7g066310 45.188 478 164 10 7 482 2 383 1.12e-115 347
MS.gene77226.t1 MTR_7g066680 58.472 301 90 4 211 479 38 335 1.27e-103 313
MS.gene77226.t1 MTR_7g063660 39.165 503 258 12 7 489 4 478 1.12e-102 316
MS.gene77226.t1 MTR_7g063900 41.765 510 255 12 1 489 1 489 4.41e-101 312
MS.gene77226.t1 MTR_7g063840 38.922 501 267 14 1 489 1 474 1.54e-99 307
MS.gene77226.t1 MTR_7g062280 37.259 518 266 10 4 489 2 492 4.56e-99 307
MS.gene77226.t1 MTR_7g063820 40.241 497 273 10 4 489 2 485 1.00e-96 300
MS.gene77226.t1 MTR_7g062300 38.189 508 251 13 1 481 1 472 1.35e-96 300
MS.gene77226.t1 MTR_7g063890 42.012 507 247 12 6 488 21 504 1.41e-94 296
MS.gene77226.t1 MTR_7g063880 39.802 505 247 15 3 488 2 468 8.47e-93 290
MS.gene77226.t1 MTR_7g063920 38.124 501 231 10 3 489 2 437 1.37e-90 283
MS.gene77226.t1 MTR_4g019310 36.853 502 279 13 6 482 2 490 1.01e-87 278
MS.gene77226.t1 MTR_7g063830 36.694 496 238 12 4 482 2 438 4.16e-87 275
MS.gene77226.t1 MTR_7g066280 42.892 415 189 10 91 482 1 390 2.35e-86 271
MS.gene77226.t1 MTR_3g065200 37.708 480 221 12 10 479 1 412 1.60e-84 268
MS.gene77226.t1 MTR_1g014060 60.849 212 71 3 21 225 9 215 2.99e-81 258
MS.gene77226.t1 MTR_1g014060 46.667 210 91 3 280 489 203 391 7.36e-48 170
MS.gene77226.t1 MTR_1g014060 27.094 203 131 9 271 465 13 206 1.46e-11 66.6
MS.gene77226.t1 MTR_3g007740 36.961 487 240 14 11 482 8 442 4.90e-79 253
MS.gene77226.t1 MTR_7g063670 37.323 493 243 13 13 489 16 458 6.32e-77 248
MS.gene77226.t1 MTR_4g017410 32.841 542 258 17 1 488 1 490 1.71e-74 243
MS.gene77226.t1 MTR_4g017830 32.892 529 292 16 1 488 1 507 2.52e-74 244
MS.gene77226.t1 MTR_7g066480 42.733 344 158 8 5 328 9 333 8.53e-73 237
MS.gene77226.t1 MTR_7g066480 49.275 69 35 0 410 478 349 417 6.73e-11 64.7
MS.gene77226.t1 MTR_7g066490 42.284 324 160 8 12 328 16 319 3.28e-71 232
MS.gene77226.t1 MTR_4g017610 33.737 495 264 14 15 479 16 476 3.75e-71 234
MS.gene77226.t1 MTR_4g017440 33.719 519 276 19 13 488 15 508 4.22e-70 232
MS.gene77226.t1 MTR_4g019340 34.600 500 248 16 13 470 39 501 2.57e-69 230
MS.gene77226.t1 MTR_4g019340 26.606 218 135 5 12 222 303 502 2.70e-11 66.2
MS.gene77226.t1 MTR_4g017470 30.930 527 274 15 1 488 1 476 5.95e-64 215
MS.gene77226.t1 MTR_4g017550 31.911 492 241 17 42 480 21 471 4.11e-55 191
MS.gene77226.t1 MTR_4g017550 29.362 235 131 7 12 226 247 466 1.64e-12 69.7
MS.gene77226.t1 MTR_7g063720 36.325 234 124 5 258 489 23 233 4.46e-38 139
MS.gene77226.t1 MTR_7g063720 25.446 224 133 7 12 227 23 220 4.05e-13 69.3
MS.gene77226.t1 MTR_7g062270 42.373 177 90 5 13 186 11 178 4.10e-36 138
MS.gene77226.t1 MTR_2g067310 44.828 174 51 3 23 196 58 186 3.68e-32 123
MS.gene77226.t1 MTR_7g063850 33.617 235 140 4 258 488 66 288 1.39e-28 115
MS.gene77226.t1 MTR_8g023240 26.078 487 292 18 13 474 38 481 1.23e-26 113
MS.gene77226.t1 MTR_1g115440 31.890 254 132 7 3 232 2 238 1.09e-25 105
MS.gene77226.t1 MTR_1g115440 28.390 236 149 7 252 475 5 232 3.45e-19 87.0
MS.gene77226.t1 MTR_7g100420 33.762 311 194 8 169 478 94 393 5.38e-25 107
MS.gene77226.t1 MTR_7g100420 59.322 59 20 1 13 67 40 98 1.24e-12 69.7
MS.gene77226.t1 MTR_0150s0010 34.016 244 142 6 1 232 1 237 1.73e-23 99.4
MS.gene77226.t1 MTR_0150s0010 27.632 228 149 5 258 475 10 231 9.46e-18 82.8
MS.gene77226.t1 MTR_8g445860 31.048 248 139 7 4 233 5 238 1.90e-23 99.4
MS.gene77226.t1 MTR_8g445860 27.778 234 150 6 247 470 2 226 2.30e-19 87.8
MS.gene77226.t1 MTR_7g066390 34.783 184 58 4 299 482 1 122 8.89e-21 89.4
MS.gene77226.t1 MTR_4g019240 41.818 110 54 4 13 114 14 121 8.78e-18 81.6
MS.gene77226.t1 MTR_1g115455 28.352 261 131 9 1 233 1 233 7.90e-17 80.1
MS.gene77226.t1 MTR_1g115450 39.773 88 48 1 9 96 4 86 3.23e-15 73.2
MS.gene77226.t1 MTR_7g063690 33.974 156 84 5 139 285 77 222 3.69e-15 75.5
MS.gene77226.t1 MTR_7g063690 68.750 48 15 0 13 60 13 60 1.29e-12 68.2
MS.gene77226.t1 MTR_0150s0030 35.644 101 56 3 6 102 2 97 7.45e-14 70.9
MS.gene77226.t1 MTR_8g445920 37.363 91 52 1 4 94 2 87 2.75e-13 66.6
MS.gene77226.t1 MTR_8g044890 37.363 91 52 1 4 94 2 87 2.75e-13 66.6
MS.gene77226.t1 MTR_8g445910 36.634 101 55 3 6 102 2 97 4.99e-13 69.7
MS.gene77226.t1 MTR_8g044880 38.462 91 50 2 6 95 2 87 6.65e-13 69.3
MS.gene77226.t1 MTR_1g115470 37.895 95 52 2 12 104 6 95 6.45e-12 67.8
MS.gene77226.t1 MTR_7g063870 52.727 55 26 0 6 60 25 79 1.22e-11 65.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene77226.t1 AT5G01120 33.058 484 298 10 13 478 10 485 3.59e-68 227
MS.gene77226.t1 AT5G01150 30.185 487 308 7 12 482 9 479 4.75e-61 208
MS.gene77226.t1 AT3G09140 29.651 516 306 13 1 482 1 493 1.30e-57 199
MS.gene77226.t1 AT5G43240 30.285 492 305 13 13 478 10 489 1.35e-56 196
MS.gene77226.t1 AT5G43240 30.285 492 305 13 13 478 10 489 1.35e-56 196
MS.gene77226.t1 AT5G43240 30.285 492 305 13 13 478 10 489 1.35e-56 196
MS.gene77226.t1 AT3G09140 28.440 545 303 15 1 482 1 521 4.23e-54 190
MS.gene77226.t1 AT5G01140 28.542 480 297 8 12 482 9 451 1.17e-53 187
MS.gene77226.t1 AT3G09110 33.022 321 197 5 12 322 9 321 6.28e-52 179
MS.gene77226.t1 AT5G01130 29.814 483 280 12 12 482 9 444 2.91e-49 175
MS.gene77226.t1 AT3G09120 33.544 316 189 7 11 312 5 313 3.86e-48 169
MS.gene77226.t1 AT5G37320 28.291 509 299 14 6 482 5 479 2.82e-40 151
MS.gene77226.t1 AT5G43240 26.048 334 216 9 165 478 23 345 2.65e-18 87.0

Find 94 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTCCAATTGGAATAATT+TGG 0.149562 7.2:-37306832 None:intergenic
ATTCCTGAACTCAGACTTTC+TGG 0.157859 7.2:-37306157 None:intergenic
GCACTTCGTCTGTAGGAATT+TGG 0.188453 7.2:+37306033 MS.gene77226:CDS
TTCGAGATTAAATAACTTTC+GGG 0.198303 7.2:-37306752 None:intergenic
AAAGTTTGTACTTCTAAATT+TGG 0.207777 7.2:+37306955 MS.gene77226:CDS
AACATTGAAGCTGTGAAATT+TGG 0.238206 7.2:+37305857 MS.gene77226:CDS
TTTCGAGATTAAATAACTTT+CGG 0.317780 7.2:-37306753 None:intergenic
GCATTTGAAGCAGATATCTT+AGG 0.320331 7.2:-37306983 None:intergenic
CTCTGATATTGGCGCTATTA+CGG 0.348550 7.2:+37306282 MS.gene77226:CDS
ATCTTGATGAACAATATCTA+TGG 0.360687 7.2:+37305912 MS.gene77226:CDS
TATGTGATGCCTAATGTCTT+TGG 0.362342 7.2:+37306226 MS.gene77226:CDS
CCGACTCATACCGATCATTA+AGG 0.365612 7.2:+37307295 MS.gene77226:CDS
AAGCTAGAAATCTCTGATAT+TGG 0.370678 7.2:+37306271 MS.gene77226:CDS
CAAAGTTACATTGAGAGTTA+TGG 0.373530 7.2:+37305715 MS.gene77226:CDS
TACAACCAAATTATTCCAAT+TGG 0.382733 7.2:+37306827 MS.gene77226:CDS
CTACAGACGAAGTGCTGAAT+AGG 0.386000 7.2:-37306025 None:intergenic
TTCAGGAATCGGGTTTGTTA+AGG 0.391995 7.2:+37306171 MS.gene77226:CDS
AGCTTCTTAACATTGCCTTT+AGG 0.397252 7.2:+37305803 MS.gene77226:CDS
TACAAAAGTGTCACCGAGTT+GGG 0.399895 7.2:+37306728 MS.gene77226:CDS
GGTGAGCAAGCTACTCCAAT+TGG 0.408678 7.2:-37306842 None:intergenic
TCAACTTCTGCTATGTCAAT+TGG 0.409564 7.2:+37307266 MS.gene77226:CDS
ATAACTGTTCCAAAGACATT+AGG 0.411288 7.2:-37306235 None:intergenic
AGACTTTCTGGTTGTGGCGG+TGG 0.425983 7.2:-37306145 None:intergenic
AAAGACCCCATGCCTAAGAT+TGG 0.444516 7.2:+37306515 MS.gene77226:CDS
AGCCCAAATTGTGCAGCAAT+GGG 0.447358 7.2:-37306803 None:intergenic
GATTCCTAAATAAGCTCAAA+AGG 0.452463 7.2:-37306081 None:intergenic
ACGTTTCCAATCTTAGGCAT+GGG 0.455062 7.2:-37306521 None:intergenic
AGATATTCTCAAGTTGTCAT+TGG 0.455399 7.2:+37306427 MS.gene77226:CDS
GTCTCTGCATTCTAAAAGCT+TGG 0.457550 7.2:+37307237 MS.gene77226:CDS
GATGTCACGTTTCCAATCTT+AGG 0.459654 7.2:-37306527 None:intergenic
TAAAGATGAAGTCTGTCAAA+GGG 0.461684 7.2:-37306460 None:intergenic
GAATTTGGATTGTGTAAGAA+AGG 0.463812 7.2:+37306048 MS.gene77226:CDS
GAAGAAAAGATCGTTACAAT+TGG 0.472202 7.2:+37307136 MS.gene77226:CDS
GTAGTGAGAAGAAAATCAAC+TGG 0.473144 7.2:+37306578 MS.gene77226:CDS
TAAGAATGACAATAATAGTC+AGG 0.476190 7.2:-37306863 None:intergenic
GAAAGTCTGAGTTCAGGAAT+CGG 0.478252 7.2:+37306160 MS.gene77226:CDS
GAACTCAGACTTTCTGGTTG+TGG 0.478625 7.2:-37306151 None:intergenic
TAAGCTTCCATGGAATTCCT+TGG 0.480256 7.2:-37305965 None:intergenic
GGAGTGTTGCATATGCTTCA+AGG 0.481204 7.2:+37306674 MS.gene77226:CDS
CCCAAATTGTGCAGCAATGG+GGG 0.484081 7.2:-37306801 None:intergenic
AGTCGTGGAGAATTTGCAAA+AGG 0.484219 7.2:+37307010 MS.gene77226:CDS
AAAGTCTGAGTTCAGGAATC+GGG 0.490673 7.2:+37306161 MS.gene77226:CDS
CACGTTTCCAATCTTAGGCA+TGG 0.493866 7.2:-37306522 None:intergenic
TGTCATTCTTACATTCATGA+TGG 0.498732 7.2:+37306875 MS.gene77226:CDS
AAGCCCAAATTGTGCAGCAA+TGG 0.499669 7.2:-37306804 None:intergenic
CAACCAGAAAGTCTGAGTTC+AGG 0.501237 7.2:+37306154 MS.gene77226:CDS
AGGAATCAATTGTGCAGTTG+TGG 0.505730 7.2:+37306097 MS.gene77226:CDS
AGCTTCAATGTTCGACTCCT+CGG 0.505824 7.2:-37305846 None:intergenic
CTTCTGACAATAAGCTTCCA+TGG 0.507424 7.2:-37305975 None:intergenic
TTAAAGATGAAGTCTGTCAA+AGG 0.510856 7.2:-37306461 None:intergenic
CATTTCTCGTCCTTAATGAT+CGG 0.522608 7.2:-37307305 None:intergenic
GTGGCGGTGGAGATAATACT+TGG 0.526149 7.2:-37306132 None:intergenic
GAGTTATGGTGGACAAAGAA+AGG 0.528542 7.2:+37305729 MS.gene77226:CDS
AAATGTTTCACTAAATGATG+TGG 0.528686 7.2:+37307114 MS.gene77226:CDS
TTTCTAACCTTCCCTTTGGG+AGG 0.538966 7.2:+37306653 MS.gene77226:CDS
GATTGTGTAAGAAAGGAAAG+TGG 0.542075 7.2:+37306055 MS.gene77226:CDS
GATCGTTACAATTGGTCTGA+AGG 0.544330 7.2:+37307144 MS.gene77226:CDS
TTTGTATGCTGAGGCAGGGA+AGG 0.547892 7.2:+37305760 MS.gene77226:CDS
AGTCTTGCAATAGTACCTAA+AGG 0.548353 7.2:-37305818 None:intergenic
CTATTCAGCACTTCGTCTGT+AGG 0.556154 7.2:+37306026 MS.gene77226:CDS
AAATATTCTGACATGGTCGT+TGG 0.556307 7.2:+37306488 MS.gene77226:CDS
GTCGTGGAGAATTTGCAAAA+GGG 0.558749 7.2:+37307011 MS.gene77226:CDS
TAAATGTGATATAGCAGTGA+AGG 0.560380 7.2:-37307083 None:intergenic
ATACATGGTGACAGTTGACT+TGG 0.564692 7.2:+37307042 MS.gene77226:CDS
ATACAAAAGTGTCACCGAGT+TGG 0.569081 7.2:+37306727 MS.gene77226:CDS
AAAAGGGCCATCAGTATACA+TGG 0.572178 7.2:+37307027 MS.gene77226:CDS
ATAACTTTCGGGACCCAACT+CGG 0.573569 7.2:-37306741 None:intergenic
CTCAGACTTTCTGGTTGTGG+CGG 0.574203 7.2:-37306148 None:intergenic
TATGCAACACTCCTCCCAAA+GGG 0.585511 7.2:-37306664 None:intergenic
ACTCAAGCCAAGGAATTCCA+TGG 0.587581 7.2:+37305958 MS.gene77226:CDS
ATTGGAAACGTGACATCCGA+AGG 0.589163 7.2:+37306533 MS.gene77226:CDS
ATTGTGTAAGAAAGGAAAGT+GGG 0.589764 7.2:+37306056 MS.gene77226:CDS
ATATGCAACACTCCTCCCAA+AGG 0.595650 7.2:-37306665 None:intergenic
TGGAAACGTGACATCCGAAG+GGG 0.597792 7.2:+37306535 MS.gene77226:CDS
TATTGCAAGACTAGTGGCCG+AGG 0.599051 7.2:+37305829 MS.gene77226:CDS
CGTTTCCAATCTTAGGCATG+GGG 0.601735 7.2:-37306520 None:intergenic
TCTATGGACTCATACTTGCA+AGG 0.605084 7.2:+37305928 MS.gene77226:CDS
AGTTACATTGAGAGTTATGG+TGG 0.605938 7.2:+37305718 MS.gene77226:CDS
CCAAATTGTGCAGCAATGGG+GGG 0.606397 7.2:-37306800 None:intergenic
CAAATTGTGCAGCAATGGGG+GGG 0.610112 7.2:-37306799 None:intergenic
AGGTACTATTGCAAGACTAG+TGG 0.614356 7.2:+37305823 MS.gene77226:CDS
AGGAAATGCTACTCAAGCCA+AGG 0.617283 7.2:+37305948 MS.gene77226:CDS
ACTGTCACCATGTATACTGA+TGG 0.619928 7.2:-37307034 None:intergenic
CGTTACAATTGGTCTGAAGG+AGG 0.622933 7.2:+37307147 MS.gene77226:CDS
TTGGAAACGTGACATCCGAA+GGG 0.625254 7.2:+37306534 MS.gene77226:CDS
AGGCATCACATATAGATCGT+CGG 0.631749 7.2:-37306215 None:intergenic
ATAGCAGTGAAGGATGACAT+TGG 0.632785 7.2:-37307073 None:intergenic
CAACACTCCTCCCAAAGGGA+AGG 0.633699 7.2:-37306660 None:intergenic
GCTTCAAATGCATCAAGTCG+TGG 0.633999 7.2:+37306995 MS.gene77226:CDS
CCTTAATGATCGGTATGAGT+CGG 0.634454 7.2:-37307295 None:intergenic
TAGCTCACTGTATCAGAGTG+TGG 0.646397 7.2:+37305886 MS.gene77226:CDS
AAAGATGAAGTCTGTCAAAG+GGG 0.650333 7.2:-37306459 None:intergenic
GCCCAAATTGTGCAGCAATG+GGG 0.665458 7.2:-37306802 None:intergenic
GGAAACGTGACATCCGAAGG+GGG 0.720105 7.2:+37306536 MS.gene77226:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATATTTTTACTTTTGC+AGG + chr7.2:37306400-37306419 MS.gene77226:intron 15.0%
!! AAAGTTTGTACTTCTAAATT+TGG + chr7.2:37306955-37306974 MS.gene77226:CDS 20.0%
!! TAAAAAGAAATATTCTGACA+TGG + chr7.2:37306481-37306500 MS.gene77226:CDS 20.0%
!! TTTCGAGATTAAATAACTTT+CGG - chr7.2:37306756-37306775 None:intergenic 20.0%
! AAATGTTTCACTAAATGATG+TGG + chr7.2:37307114-37307133 MS.gene77226:CDS 25.0%
! ATCTTGATGAACAATATCTA+TGG + chr7.2:37305912-37305931 MS.gene77226:CDS 25.0%
! TAAGAATGACAATAATAGTC+AGG - chr7.2:37306866-37306885 None:intergenic 25.0%
! TACAACCAAATTATTCCAAT+TGG + chr7.2:37306827-37306846 MS.gene77226:CDS 25.0%
! TTCGAGATTAAATAACTTTC+GGG - chr7.2:37306755-37306774 None:intergenic 25.0%
AACATTGAAGCTGTGAAATT+TGG + chr7.2:37305857-37305876 MS.gene77226:CDS 30.0%
AAGCTAGAAATCTCTGATAT+TGG + chr7.2:37306271-37306290 MS.gene77226:CDS 30.0%
ATAACTGTTCCAAAGACATT+AGG - chr7.2:37306238-37306257 None:intergenic 30.0%
ATTGTGTAAGAAAGGAAAGT+GGG + chr7.2:37306056-37306075 MS.gene77226:CDS 30.0%
CAAAGTTACATTGAGAGTTA+TGG + chr7.2:37305715-37305734 MS.gene77226:CDS 30.0%
CTACTCCAATTGGAATAATT+TGG - chr7.2:37306835-37306854 None:intergenic 30.0%
GAAGAAAAGATCGTTACAAT+TGG + chr7.2:37307136-37307155 MS.gene77226:CDS 30.0%
GAATTTGGATTGTGTAAGAA+AGG + chr7.2:37306048-37306067 MS.gene77226:CDS 30.0%
GATTCCTAAATAAGCTCAAA+AGG - chr7.2:37306084-37306103 None:intergenic 30.0%
TAAAGATGAAGTCTGTCAAA+GGG - chr7.2:37306463-37306482 None:intergenic 30.0%
TAAATGTGATATAGCAGTGA+AGG - chr7.2:37307086-37307105 None:intergenic 30.0%
TGTCATTCTTACATTCATGA+TGG + chr7.2:37306875-37306894 MS.gene77226:CDS 30.0%
TTAAAGATGAAGTCTGTCAA+AGG - chr7.2:37306464-37306483 None:intergenic 30.0%
TTGTCTGTTAACATATTGCA+GGG + chr7.2:37307215-37307234 MS.gene77226:intron 30.0%
! AGATATTCTCAAGTTGTCAT+TGG + chr7.2:37306427-37306446 MS.gene77226:CDS 30.0%
AAAGATGAAGTCTGTCAAAG+GGG - chr7.2:37306462-37306481 None:intergenic 35.0%
AAATATTCTGACATGGTCGT+TGG + chr7.2:37306488-37306507 MS.gene77226:CDS 35.0%
ACGGAACAAACTGTTGATAT+CGG + chr7.2:37306301-37306320 MS.gene77226:intron 35.0%
AGCTTCTTAACATTGCCTTT+AGG + chr7.2:37305803-37305822 MS.gene77226:CDS 35.0%
AGTCTTGCAATAGTACCTAA+AGG - chr7.2:37305821-37305840 None:intergenic 35.0%
AGTTACATTGAGAGTTATGG+TGG + chr7.2:37305718-37305737 MS.gene77226:CDS 35.0%
CATTTCTCGTCCTTAATGAT+CGG - chr7.2:37307308-37307327 None:intergenic 35.0%
CTTGTCTGTTAACATATTGC+AGG + chr7.2:37307214-37307233 MS.gene77226:intron 35.0%
GATTGTGTAAGAAAGGAAAG+TGG + chr7.2:37306055-37306074 MS.gene77226:CDS 35.0%
GCAAATTAATGAAAACGCAG+TGG - chr7.2:37307177-37307196 None:intergenic 35.0%
GTAGTGAGAAGAAAATCAAC+TGG + chr7.2:37306578-37306597 MS.gene77226:CDS 35.0%
TATGTGATGCCTAATGTCTT+TGG + chr7.2:37306226-37306245 MS.gene77226:CDS 35.0%
TCAACTTCTGCTATGTCAAT+TGG + chr7.2:37307266-37307285 MS.gene77226:CDS 35.0%
! AGTTTTCTAACCTTCCCTTT+GGG + chr7.2:37306650-37306669 MS.gene77226:CDS 35.0%
! CAAACTTTTCAGCAGGATAA+CGG - chr7.2:37306943-37306962 None:intergenic 35.0%
! GCATTTGAAGCAGATATCTT+AGG - chr7.2:37306986-37307005 None:intergenic 35.0%
! GGAACCTTTTGAGCTTATTT+AGG + chr7.2:37306077-37306096 MS.gene77226:CDS 35.0%
!! AAGATTTTGTTTGCTGAAGC+AGG + chr7.2:37306602-37306621 MS.gene77226:CDS 35.0%
!! AGAAGTACAAACTTTTCAGC+AGG - chr7.2:37306950-37306969 None:intergenic 35.0%
!! GAACAAAGTTTTGTATGCTG+AGG + chr7.2:37305751-37305770 MS.gene77226:CDS 35.0%
AAAAGGGCCATCAGTATACA+TGG + chr7.2:37307027-37307046 MS.gene77226:CDS 40.0%
AAAGTCTGAGTTCAGGAATC+GGG + chr7.2:37306161-37306180 MS.gene77226:CDS 40.0%
ACGTTTCCAATCTTAGGCAT+GGG - chr7.2:37306524-37306543 None:intergenic 40.0%
ACTGTCACCATGTATACTGA+TGG - chr7.2:37307037-37307056 None:intergenic 40.0%
AGGAATCAATTGTGCAGTTG+TGG + chr7.2:37306097-37306116 MS.gene77226:CDS 40.0%
AGGCATCACATATAGATCGT+CGG - chr7.2:37306218-37306237 None:intergenic 40.0%
AGGTACTATTGCAAGACTAG+TGG + chr7.2:37305823-37305842 MS.gene77226:CDS 40.0%
AGTCGTGGAGAATTTGCAAA+AGG + chr7.2:37307010-37307029 MS.gene77226:CDS 40.0%
ATACATGGTGACAGTTGACT+TGG + chr7.2:37307042-37307061 MS.gene77226:CDS 40.0%
ATAGCAGTGAAGGATGACAT+TGG - chr7.2:37307076-37307095 None:intergenic 40.0%
ATTCCTGAACTCAGACTTTC+TGG - chr7.2:37306160-37306179 None:intergenic 40.0%
CCTTAATGATCGGTATGAGT+CGG - chr7.2:37307298-37307317 None:intergenic 40.0%
CTCTGATATTGGCGCTATTA+CGG + chr7.2:37306282-37306301 MS.gene77226:CDS 40.0%
CTTCTGACAATAAGCTTCCA+TGG - chr7.2:37305978-37305997 None:intergenic 40.0%
GAAAGTCTGAGTTCAGGAAT+CGG + chr7.2:37306160-37306179 MS.gene77226:CDS 40.0%
GATGTCACGTTTCCAATCTT+AGG - chr7.2:37306530-37306549 None:intergenic 40.0%
GTCGTGGAGAATTTGCAAAA+GGG + chr7.2:37307011-37307030 MS.gene77226:CDS 40.0%
TAAGCTTCCATGGAATTCCT+TGG - chr7.2:37305968-37305987 None:intergenic 40.0%
TCTATGGACTCATACTTGCA+AGG + chr7.2:37305928-37305947 MS.gene77226:CDS 40.0%
TGTTGATATCGGCAAGAAAG+AGG + chr7.2:37306312-37306331 MS.gene77226:intron 40.0%
! CAGTTTTCTAACCTTCCCTT+TGG + chr7.2:37306649-37306668 MS.gene77226:CDS 40.0%
! GATCGTTACAATTGGTCTGA+AGG + chr7.2:37307144-37307163 MS.gene77226:CDS 40.0%
! GTCTCTGCATTCTAAAAGCT+TGG + chr7.2:37307237-37307256 MS.gene77226:CDS 40.0%
!! AAAGTTTTGTATGCTGAGGC+AGG + chr7.2:37305755-37305774 MS.gene77226:CDS 40.0%
!! AAGTTTTGTATGCTGAGGCA+GGG + chr7.2:37305756-37305775 MS.gene77226:CDS 40.0%
!! ATACAAAAGTGTCACCGAGT+TGG + chr7.2:37306727-37306746 MS.gene77226:CDS 40.0%
!! GAGTTATGGTGGACAAAGAA+AGG + chr7.2:37305729-37305748 MS.gene77226:CDS 40.0%
!! TACAAAAGTGTCACCGAGTT+GGG + chr7.2:37306728-37306747 MS.gene77226:CDS 40.0%
!! TTCAGGAATCGGGTTTGTTA+AGG + chr7.2:37306171-37306190 MS.gene77226:CDS 40.0%
AAAGACCCCATGCCTAAGAT+TGG + chr7.2:37306515-37306534 MS.gene77226:CDS 45.0%
AAGCCCAAATTGTGCAGCAA+TGG - chr7.2:37306807-37306826 None:intergenic 45.0%
ACTCAAGCCAAGGAATTCCA+TGG + chr7.2:37305958-37305977 MS.gene77226:CDS 45.0%
AGCCCAAATTGTGCAGCAAT+GGG - chr7.2:37306806-37306825 None:intergenic 45.0%
AGCTTCAATGTTCGACTCCT+CGG - chr7.2:37305849-37305868 None:intergenic 45.0%
AGGAAATGCTACTCAAGCCA+AGG + chr7.2:37305948-37305967 MS.gene77226:CDS 45.0%
ATAACTTTCGGGACCCAACT+CGG - chr7.2:37306744-37306763 None:intergenic 45.0%
ATATGCAACACTCCTCCCAA+AGG - chr7.2:37306668-37306687 None:intergenic 45.0%
ATTGGAAACGTGACATCCGA+AGG + chr7.2:37306533-37306552 MS.gene77226:CDS 45.0%
CAACCAGAAAGTCTGAGTTC+AGG + chr7.2:37306154-37306173 MS.gene77226:CDS 45.0%
CACGTTTCCAATCTTAGGCA+TGG - chr7.2:37306525-37306544 None:intergenic 45.0%
CCGACTCATACCGATCATTA+AGG + chr7.2:37307295-37307314 MS.gene77226:CDS 45.0%
CGTTTCCAATCTTAGGCATG+GGG - chr7.2:37306523-37306542 None:intergenic 45.0%
CTATTCAGCACTTCGTCTGT+AGG + chr7.2:37306026-37306045 MS.gene77226:CDS 45.0%
GCACTTCGTCTGTAGGAATT+TGG + chr7.2:37306033-37306052 MS.gene77226:CDS 45.0%
GCTTCAAATGCATCAAGTCG+TGG + chr7.2:37306995-37307014 MS.gene77226:CDS 45.0%
TAGCTCACTGTATCAGAGTG+TGG + chr7.2:37305886-37305905 MS.gene77226:CDS 45.0%
TATGCAACACTCCTCCCAAA+GGG - chr7.2:37306667-37306686 None:intergenic 45.0%
TTGGAAACGTGACATCCGAA+GGG + chr7.2:37306534-37306553 MS.gene77226:CDS 45.0%
TTTCTAACCTTCCCTTTGGG+AGG + chr7.2:37306653-37306672 MS.gene77226:CDS 45.0%
! CGTTACAATTGGTCTGAAGG+AGG + chr7.2:37307147-37307166 MS.gene77226:CDS 45.0%
!! CTACAGACGAAGTGCTGAAT+AGG - chr7.2:37306028-37306047 None:intergenic 45.0%
!! GAACTCAGACTTTCTGGTTG+TGG - chr7.2:37306154-37306173 None:intergenic 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG + chr7.2:37306674-37306693 MS.gene77226:CDS 45.0%
AGATATCTGCCTACCCCCTT+CGG - chr7.2:37306552-37306571 None:intergenic 50.0%
CAAATTGTGCAGCAATGGGG+GGG - chr7.2:37306802-37306821 None:intergenic 50.0%
CCAAATTGTGCAGCAATGGG+GGG - chr7.2:37306803-37306822 None:intergenic 50.0%
CCCAAATTGTGCAGCAATGG+GGG - chr7.2:37306804-37306823 None:intergenic 50.0%
CCCCCATTGCTGCACAATTT+GGG + chr7.2:37306801-37306820 MS.gene77226:CDS 50.0%
GCCCAAATTGTGCAGCAATG+GGG - chr7.2:37306805-37306824 None:intergenic 50.0%
GGTGAGCAAGCTACTCCAAT+TGG - chr7.2:37306845-37306864 None:intergenic 50.0%
GTGGCGGTGGAGATAATACT+TGG - chr7.2:37306135-37306154 None:intergenic 50.0%
TATTGCAAGACTAGTGGCCG+AGG + chr7.2:37305829-37305848 MS.gene77226:CDS 50.0%
TGGAAACGTGACATCCGAAG+GGG + chr7.2:37306535-37306554 MS.gene77226:CDS 50.0%
TTTGTATGCTGAGGCAGGGA+AGG + chr7.2:37305760-37305779 MS.gene77226:CDS 50.0%
!! CTCAGACTTTCTGGTTGTGG+CGG - chr7.2:37306151-37306170 None:intergenic 50.0%
CAACACTCCTCCCAAAGGGA+AGG - chr7.2:37306663-37306682 None:intergenic 55.0%
CCCCCCATTGCTGCACAATT+TGG + chr7.2:37306800-37306819 MS.gene77226:CDS 55.0%
GGAAACGTGACATCCGAAGG+GGG + chr7.2:37306536-37306555 MS.gene77226:CDS 55.0%
!! AGACTTTCTGGTTGTGGCGG+TGG - chr7.2:37306148-37306167 None:intergenic 55.0%
ACGTGACATCCGAAGGGGGT+AGG + chr7.2:37306540-37306559 MS.gene77226:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 37305683 37307328 37305683 ID=MS.gene77226
chr7.2 mRNA 37305683 37307328 37305683 ID=MS.gene77226.t1;Parent=MS.gene77226
chr7.2 exon 37305683 37306312 37305683 ID=MS.gene77226.t1.exon1;Parent=MS.gene77226.t1
chr7.2 CDS 37305683 37306312 37305683 ID=cds.MS.gene77226.t1;Parent=MS.gene77226.t1
chr7.2 exon 37306422 37307168 37306422 ID=MS.gene77226.t1.exon2;Parent=MS.gene77226.t1
chr7.2 CDS 37306422 37307168 37306422 ID=cds.MS.gene77226.t1;Parent=MS.gene77226.t1
chr7.2 exon 37307236 37307328 37307236 ID=MS.gene77226.t1.exon3;Parent=MS.gene77226.t1
chr7.2 CDS 37307236 37307328 37307236 ID=cds.MS.gene77226.t1;Parent=MS.gene77226.t1
Gene Sequence

>MS.gene77226

ATGGCAGCTAGCAATGCAACTAAATCAGTTGACAAAGTTACATTGAGAGTTATGGTGGACAAAGAAAGGAACAAAGTTTTGTATGCTGAGGCAGGGAAGGATTTTGTTGATGCTCTCTTCAGCTTCTTAACATTGCCTTTAGGTACTATTGCAAGACTAGTGGCCGAGGAGTCGAACATTGAAGCTGTGAAATTTGGCAGCATTAGCTCACTGTATCAGAGTGTGGCAAATCTTGATGAACAATATCTATGGACTCATACTTGCAAGGAAATGCTACTCAAGCCAAGGAATTCCATGGAAGCTTATTGTCAGAAGATGAAACTGAATATCGACGACACAGAACCTATTCAGCACTTCGTCTGTAGGAATTTGGATTGTGTAAGAAAGGAAAGTGGGAACCTTTTGAGCTTATTTAGGAATCAATTGTGCAGTTGTGGAAAAGTAATGAACCAAGTATTATCTCCACCGCCACAACCAGAAAGTCTGAGTTCAGGAATCGGGTTTGTTAAGGAAACTGCTGCATTTATTATTTCCGACGATCTATATGTGATGCCTAATGTCTTTGGAACAGTTATACAACTACTTCACAAGCTAGAAATCTCTGATATTGGCGCTATTACGGAACAAACTGTTGATATCGGCAAGAAAGAGGCATGCTTTCTTATGCAACTCTCTTCTGAAATATACTATCTATGCAGTTTATTATTTGTTTTCTCATTAAATATTTTTACTTTTGCAGGTCATAGATATTCTCAAGTTGTCATTGGTCTCAAAGACCCCTTTGACAGACTTCATCTTTAAAAAGAAATATTCTGACATGGTCGTTGGTCTCAAAGACCCCATGCCTAAGATTGGAAACGTGACATCCGAAGGGGGTAGGCAGATATCTGTGAAAGTAGTGAGAAGAAAATCAACTGGAAAGATTTTGTTTGCTGAAGCAGGAGATGATTTTTTGAACTTTGTTTTCAGTTTTCTAACCTTCCCTTTGGGAGGAGTGTTGCATATGCTTCAAGGTTTCTCTTCTTTAAACTGCATTGATAATTTATACAAAAGTGTCACCGAGTTGGGTCCCGAAAGTTATTTAATCTCGAAATATCTTAAAGAGAAATTAATTAACCCCCCCATTGCTGCACAATTTGGGCTTTACAACCAAATTATTCCAATTGGAGTAGCTTGCTCACCTGACTATTATTGTCATTCTTACATTCATGATGGTCAGTATACTCGCGCACTAACTGATTCATACACGCATAATGTCCGTTATCCTGCTGAAAAGTTTGTACTTCTAAATTTGGTTGATCCTAAGATATCTGCTTCAAATGCATCAAGTCGTGGAGAATTTGCAAAAGGGCCATCAGTATACATGGTGACAGTTGACTTGGTTATTACTCCAATGTCATCCTTCACTGCTATATCACATTTAAATAGTTCAAATGTTTCACTAAATGATGTGGAAGAAAAGATCGTTACAATTGGTCTGAAGGAGGTAAGCCACTGCGTTTTCATTAATTTGCATGCGTTATTATAATGACTTGTCTGTTAACATATTGCAGGGTCTCTGCATTCTAAAAGCTTGGATGAACTCAACTTCTGCTATGTCAATTGGACTCAACCGACTCATACCGATCATTAAGGACGAGAAATGA
Protein sequence

>MS.gene77226.t1

MAASNATKSVDKVTLRVMVDKERNKVLYAEAGKDFVDALFSFLTLPLGTIARLVAEESNIEAVKFGSISSLYQSVANLDEQYLWTHTCKEMLLKPRNSMEAYCQKMKLNIDDTEPIQHFVCRNLDCVRKESGNLLSLFRNQLCSCGKVMNQVLSPPPQPESLSSGIGFVKETAAFIISDDLYVMPNVFGTVIQLLHKLEISDIGAITEQTVIDILKLSLVSKTPLTDFIFKKKYSDMVVGLKDPMPKIGNVTSEGGRQISVKVVRRKSTGKILFAEAGDDFLNFVFSFLTFPLGGVLHMLQGFSSLNCIDNLYKSVTELGPESYLISKYLKEKLINPPIAAQFGLYNQIIPIGVACSPDYYCHSYIHDGQYTRALTDSYTHNVRYPAEKFVLLNLVDPKISASNASSRGEFAKGPSVYMVTVDLVITPMSSFTAISHLNSSNVSLNDVEEKIVTIGLKEGLCILKAWMNSTSAMSIGLNRLIPIIKDEK