AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46164

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46164.t1 MTR_7g062280 84.114 491 63 3 5 481 3 492 0.0 815
MS.gene46164.t1 MTR_7g062300 82.983 476 74 4 1 473 1 472 0.0 783
MS.gene46164.t1 MTR_7g063920 68.399 481 108 4 1 481 1 437 0.0 620
MS.gene46164.t1 MTR_7g063880 57.732 485 183 8 1 480 1 468 3.15e-172 493
MS.gene46164.t1 MTR_7g063660 56.965 481 195 7 7 481 4 478 6.68e-171 489
MS.gene46164.t1 MTR_7g063900 55.110 499 196 9 1 481 1 489 3.76e-170 488
MS.gene46164.t1 MTR_7g063900 27.530 247 154 7 13 243 253 490 9.00e-11 64.3
MS.gene46164.t1 MTR_7g063840 55.765 477 201 7 8 481 5 474 7.62e-170 487
MS.gene46164.t1 MTR_7g063830 55.165 484 173 11 1 480 1 444 1.60e-159 459
MS.gene46164.t1 MTR_7g063820 54.767 493 203 9 1 481 1 485 1.48e-156 453
MS.gene46164.t1 MTR_3g007740 54.184 478 170 10 8 475 5 443 1.65e-152 442
MS.gene46164.t1 MTR_7g063890 55.236 487 197 12 9 480 24 504 1.99e-146 428
MS.gene46164.t1 MTR_7g063670 50.000 484 192 8 10 481 13 458 2.44e-139 409
MS.gene46164.t1 MTR_7g066570 40.927 496 255 11 4 478 6 484 1.28e-113 347
MS.gene46164.t1 MTR_3g065200 44.420 457 196 12 12 461 3 408 1.71e-108 330
MS.gene46164.t1 MTR_7g066430 42.331 489 247 8 13 474 5 485 7.94e-108 329
MS.gene46164.t1 MTR_7g066260 41.903 494 235 14 1 474 1 462 1.30e-105 323
MS.gene46164.t1 MTR_7g066410 39.258 512 261 10 10 476 8 514 2.29e-105 323
MS.gene46164.t1 MTR_7g066410 25.000 240 153 8 6 229 278 506 1.68e-11 66.6
MS.gene46164.t1 MTR_7g058710 38.323 501 272 14 1 481 1 484 1.15e-100 310
MS.gene46164.t1 MTR_7g066480 39.746 473 210 9 12 475 16 422 1.85e-94 293
MS.gene46164.t1 MTR_7g066480 29.386 228 139 9 252 468 14 230 1.32e-12 70.1
MS.gene46164.t1 MTR_7g066340 37.423 489 255 9 1 474 1 453 5.90e-94 293
MS.gene46164.t1 MTR_7g012680 38.507 509 228 15 1 481 1 452 1.37e-93 291
MS.gene46164.t1 MTR_7g066350 38.703 478 247 10 11 476 8 451 4.09e-93 290
MS.gene46164.t1 MTR_7g066580 40.084 479 225 12 24 477 7 448 8.98e-93 289
MS.gene46164.t1 MTR_7g066580 29.487 234 144 9 11 230 214 440 1.12e-14 76.3
MS.gene46164.t1 MTR_7g066360 41.478 487 222 13 2 470 4 445 2.67e-92 289
MS.gene46164.t1 MTR_7g062270 72.678 183 49 1 6 187 3 185 2.40e-89 278
MS.gene46164.t1 MTR_7g066400 36.049 491 247 10 1 476 1 439 2.47e-86 272
MS.gene46164.t1 MTR_1g041315 34.375 480 258 8 3 458 5 451 1.09e-84 269
MS.gene46164.t1 MTR_7g063720 54.435 248 96 4 235 481 2 233 7.11e-81 251
MS.gene46164.t1 MTR_7g063720 31.193 218 126 9 14 229 25 220 1.09e-18 85.5
MS.gene46164.t1 MTR_4g019310 35.039 508 286 14 6 481 2 497 2.38e-75 245
MS.gene46164.t1 MTR_7g058700 35.282 479 208 9 24 481 531 928 1.04e-74 253
MS.gene46164.t1 MTR_7g066490 43.789 322 155 7 12 325 16 319 3.26e-72 234
MS.gene46164.t1 MTR_7g066490 39.200 125 66 3 359 475 286 408 8.76e-14 73.6
MS.gene46164.t1 MTR_7g066490 28.378 222 130 8 255 468 16 216 1.21e-11 67.0
MS.gene46164.t1 MTR_7g066290 41.530 366 192 8 1 349 1 361 9.90e-72 234
MS.gene46164.t1 MTR_7g066290 63.158 57 21 0 414 470 373 429 1.68e-14 75.9
MS.gene46164.t1 MTR_7g066310 33.405 467 219 9 11 474 6 383 1.79e-71 232
MS.gene46164.t1 MTR_7g063850 44.937 316 129 8 182 480 1 288 1.47e-66 216
MS.gene46164.t1 MTR_2g029400 31.884 483 226 11 2 463 4 404 5.96e-64 213
MS.gene46164.t1 MTR_4g017830 31.298 524 299 15 1 480 1 507 7.35e-60 205
MS.gene46164.t1 MTR_4g017410 31.166 523 277 19 6 480 3 490 8.59e-55 191
MS.gene46164.t1 MTR_4g017610 32.136 501 278 18 5 470 2 475 5.47e-54 188
MS.gene46164.t1 MTR_4g017440 31.021 519 296 16 6 480 8 508 9.83e-54 188
MS.gene46164.t1 MTR_7g063690 40.702 285 100 6 3 282 2 222 2.32e-51 174
MS.gene46164.t1 MTR_7g066280 31.971 416 225 13 91 474 1 390 8.55e-51 178
MS.gene46164.t1 MTR_4g019340 31.000 500 264 15 10 462 36 501 2.53e-50 179
MS.gene46164.t1 MTR_4g017470 28.876 516 291 14 1 480 1 476 6.46e-50 177
MS.gene46164.t1 MTR_7g100420 40.777 309 163 8 168 470 99 393 2.80e-49 174
MS.gene46164.t1 MTR_7g100420 66.000 50 17 0 6 55 33 82 2.43e-12 68.9
MS.gene46164.t1 MTR_1g014060 45.146 206 105 6 21 222 9 210 1.14e-45 164
MS.gene46164.t1 MTR_1g014060 40.102 197 103 4 285 481 210 391 3.20e-33 130
MS.gene46164.t1 MTR_1g014060 28.311 219 136 8 268 474 13 222 1.09e-13 73.2
MS.gene46164.t1 MTR_7g066680 34.084 311 140 7 212 470 37 334 1.04e-41 152
MS.gene46164.t1 MTR_7g066680 25.581 215 146 8 6 214 80 286 6.95e-12 67.0
MS.gene46164.t1 MTR_8g023240 26.722 479 295 14 13 468 38 483 1.69e-37 145
MS.gene46164.t1 MTR_4g017550 30.426 470 265 18 42 470 21 469 4.27e-37 142
MS.gene46164.t1 MTR_4g017550 29.787 235 130 9 13 228 248 466 1.23e-13 73.2
MS.gene46164.t1 MTR_8g445860 32.653 245 139 7 3 235 8 238 1.93e-26 107
MS.gene46164.t1 MTR_8g445860 27.350 234 134 6 255 467 13 231 4.23e-20 89.7
MS.gene46164.t1 MTR_1g115440 32.143 252 139 10 1 234 1 238 4.23e-24 101
MS.gene46164.t1 MTR_1g115440 31.304 230 135 9 255 468 11 233 6.61e-21 92.0
MS.gene46164.t1 MTR_0150s0010 31.276 243 146 6 5 234 3 237 1.34e-22 96.7
MS.gene46164.t1 MTR_7g063760 54.054 74 33 1 409 481 1 74 4.13e-21 87.4
MS.gene46164.t1 MTR_7g066390 60.870 69 27 0 402 470 50 118 5.53e-19 84.3
MS.gene46164.t1 MTR_1g115455 29.032 248 148 8 1 235 1 233 3.46e-16 78.2
MS.gene46164.t1 MTR_2g067310 33.146 178 79 5 18 195 53 190 4.11e-15 75.5
MS.gene46164.t1 MTR_7g063870 55.357 56 25 0 6 61 25 80 4.97e-13 69.3
MS.gene46164.t1 MTR_7g063870 46.988 83 43 1 138 219 75 157 6.52e-13 68.9
MS.gene46164.t1 MTR_1g115435 28.151 238 135 10 3 235 2 208 1.62e-11 64.3
MS.gene46164.t1 MTR_1g115450 36.000 125 64 5 3 121 2 116 8.36e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46164.t1 AT5G01120 32.406 503 274 14 13 473 10 488 5.50e-65 218
MS.gene46164.t1 AT3G09140 31.731 520 286 16 1 476 1 495 3.51e-64 216
MS.gene46164.t1 AT5G01150 30.577 520 278 12 7 480 4 486 1.43e-61 209
MS.gene46164.t1 AT3G09140 30.109 548 286 17 1 476 1 523 3.44e-59 203
MS.gene46164.t1 AT5G01130 30.123 488 288 10 7 481 4 451 8.85e-56 192
MS.gene46164.t1 AT5G43240 32.797 497 278 17 13 470 10 489 4.53e-55 192
MS.gene46164.t1 AT5G43240 32.797 497 278 17 13 470 10 489 4.53e-55 192
MS.gene46164.t1 AT5G43240 32.797 497 278 17 13 470 10 489 4.53e-55 192
MS.gene46164.t1 AT3G09110 34.731 334 199 7 14 338 11 334 1.87e-54 186
MS.gene46164.t1 AT5G01140 29.184 490 297 11 7 481 4 458 8.14e-54 188
MS.gene46164.t1 AT3G09120 36.223 323 168 8 11 309 5 313 7.37e-49 170
MS.gene46164.t1 AT3G09120 28.511 235 136 5 255 468 6 229 7.63e-13 69.7
MS.gene46164.t1 AT5G37320 28.402 507 285 14 13 476 10 481 3.86e-41 154
MS.gene46164.t1 AT5G43240 28.902 346 203 12 155 470 13 345 1.60e-18 87.4

Find 87 sgRNAs with CRISPR-Local

Find 106 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAGTAATAATGATATTATT+TGG 0.111364 7.2:+40354532 MS.gene46164:CDS
GGTGGAATTGTTCGAATATT+TGG 0.115220 7.2:+40354309 MS.gene46164:CDS
AAACTAGCTTCAGAATAATT+TGG 0.145102 7.2:-40354200 None:intergenic
TTTAGTCTGTTCAAGGAATT+TGG 0.172599 7.2:+40353912 MS.gene46164:CDS
ATCCTTGGCGGAAAGATTTA+AGG 0.176231 7.2:-40353815 None:intergenic
TTCCGCCAAGGATTTGTTAA+TGG 0.249618 7.2:+40353825 MS.gene46164:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.2:-40354705 None:intergenic
TTCACATGTTACAACTTTAG+TGG 0.335742 7.2:+40353708 MS.gene46164:CDS
CAGTAATAATGATATTATTT+GGG 0.338914 7.2:+40354533 MS.gene46164:CDS
CTTGTATAATCAATACAGTT+TGG 0.351386 7.2:-40353888 None:intergenic
ACTGACTCCAATTTCAGCTT+TGG 0.361128 7.2:+40354698 MS.gene46164:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.2:-40353394 None:intergenic
CTGACTCCAATTTCAGCTTT+GGG 0.368692 7.2:+40354699 MS.gene46164:CDS
GAAAATGAATTTATCTAATG+TGG 0.375710 7.2:+40354605 MS.gene46164:CDS
TGAACACCAGGTTCAAGAAT+TGG 0.375903 7.2:-40354480 None:intergenic
TACAAGCTTTAGTCTGTTCA+AGG 0.384290 7.2:+40353905 MS.gene46164:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.2:+40353491 MS.gene46164:CDS
TACTCCTCTTAATGACTTGA+AGG 0.393876 7.2:+40354740 MS.gene46164:CDS
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.2:+40353474 MS.gene46164:CDS
GCTTTCCAAGTCAACTTTGA+CGG 0.423899 7.2:+40354101 MS.gene46164:CDS
ATCTGCACTAACAAATGGTT+TGG 0.425709 7.2:+40354957 MS.gene46164:CDS
TCACATGTTAACTGAAGTTA+AGG 0.428371 7.2:+40354981 MS.gene46164:CDS
GCAGTGTCTTAGCATATTGA+AGG 0.430801 7.2:+40354918 MS.gene46164:intron
AACCATCCCTTGAGAGATCA+AGG 0.434730 7.2:+40354142 MS.gene46164:CDS
TAATCTTCCGCTGAGTTGAT+TGG 0.438608 7.2:-40353636 None:intergenic
TTTGGAGAGAATTGTACCTT+TGG 0.438718 7.2:+40354327 MS.gene46164:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.447416 7.2:+40353426 MS.gene46164:CDS
CAAATCCGTCAAAGTTGACT+TGG 0.454131 7.2:-40354106 None:intergenic
TCTGAATGTCACCAAAGAAA+AGG 0.469867 7.2:+40353968 MS.gene46164:CDS
TGATTGCTTAACTTTAACTG+TGG 0.471996 7.2:-40354450 None:intergenic
CTTGTTTGCAGAAGCAGGTA+AGG 0.477534 7.2:+40353431 MS.gene46164:CDS
AAAATGAATTTATCTAATGT+GGG 0.483658 7.2:+40354606 MS.gene46164:CDS
TAAATATTTGATATCAAAAG+AGG 0.486512 7.2:+40354395 MS.gene46164:CDS
GGTGTAGATAAGAGTTATGC+TGG 0.489254 7.2:+40354573 MS.gene46164:CDS
TCAACATCTGCACTAACAAA+TGG 0.495981 7.2:+40354952 MS.gene46164:CDS
TTTCTTACATTTCCTTTGGG+TGG 0.496782 7.2:+40354291 MS.gene46164:CDS
TAACATGTGAAGTACTTTGT+TGG 0.498999 7.2:-40353696 None:intergenic
GATTGCTTAACTTTAACTGT+GGG 0.508677 7.2:-40354449 None:intergenic
AGATAAACCTTGATCTCTCA+AGG 0.510599 7.2:-40354149 None:intergenic
AGTTATCACAATCGGCATCA+AGG 0.517950 7.2:+40354767 MS.gene46164:CDS
AACAAGGTATTGTATGCTCA+AGG 0.521643 7.2:+40354237 MS.gene46164:CDS
TTCCTTAAATCTTTCCGCCA+AGG 0.523854 7.2:+40353813 MS.gene46164:CDS
CATTAAGAGGAGTATTCAAT+CGG 0.524642 7.2:-40354731 None:intergenic
AACCATTGCGAGATTGGTAG+AGG 0.526813 7.2:+40353497 MS.gene46164:CDS
CACCATTAACAAATCCTTGG+CGG 0.528094 7.2:-40353827 None:intergenic
TATCAAAAGAGGCTAAGAAC+AGG 0.528682 7.2:+40354406 MS.gene46164:CDS
GAAGTGATCATATCGCGATA+GGG 0.528688 7.2:-40353735 None:intergenic
TGAAGTGATCATATCGCGAT+AGG 0.529742 7.2:-40353736 None:intergenic
CCTGGTGTTCATGAATATCA+TGG 0.531687 7.2:+40354492 MS.gene46164:CDS
CAAGGTATTGTATGCTCAAG+GGG 0.532821 7.2:+40354239 MS.gene46164:CDS
CTACACCATTAACAAATCCT+TGG 0.535180 7.2:-40353830 None:intergenic
TCTGTAGCAAAATACATAGC+TGG 0.536774 7.2:-40354657 None:intergenic
TCCTGCTGAGGGTTATGTCA+AGG 0.546242 7.2:+40354632 MS.gene46164:CDS
ATATTACCAATTCTTGAACC+TGG 0.551456 7.2:+40354474 MS.gene46164:CDS
AACCTTGATCTCTCAAGGGA+TGG 0.552278 7.2:-40354144 None:intergenic
TTTAACTGTGGGGCAATGCA+AGG 0.554812 7.2:-40354438 None:intergenic
CCATGATATTCATGAACACC+AGG 0.557370 7.2:-40354492 None:intergenic
CCCTAGTTCGGTAAAAGAAG+TGG 0.558153 7.2:+40353944 MS.gene46164:CDS
CCCTTGACATAACCCTCAGC+AGG 0.568072 7.2:-40354633 None:intergenic
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.2:-40353489 None:intergenic
TAGAGGAGGAATCTAGCATA+GGG 0.583089 7.2:+40353514 MS.gene46164:CDS
TGTACCTTTGGAAGCATCAG+CGG 0.589559 7.2:+40354339 MS.gene46164:CDS
AGCATAGGGCAAGTTACAGT+CGG 0.590026 7.2:+40353528 MS.gene46164:CDS
ACAAGGTATTGTATGCTCAA+GGG 0.592568 7.2:+40354238 MS.gene46164:CDS
GTAGAGGAGGAATCTAGCAT+AGG 0.592587 7.2:+40353513 MS.gene46164:CDS
TGAAGGTTGTTTCTCTACTG+AGG 0.594448 7.2:+40353590 MS.gene46164:CDS
CATGTTAACTGAAGTTAAGG+AGG 0.596174 7.2:+40354984 MS.gene46164:CDS
AAAGCTGAAATTGGAGTCAG+TGG 0.596483 7.2:-40354696 None:intergenic
CTCCTCTACCAATCTCGCAA+TGG 0.596492 7.2:-40353499 None:intergenic
AAGTGATCATATCGCGATAG+GGG 0.607736 7.2:-40353734 None:intergenic
CCTGCTGAGGGTTATGTCAA+GGG 0.608099 7.2:+40354633 MS.gene46164:CDS
GCATAACTCTTATCTACACC+AGG 0.610698 7.2:-40354570 None:intergenic
TTTAAGAAAATCAGATAACA+AGG 0.611339 7.2:+40354221 MS.gene46164:CDS
TAATGTGGGGAATCCTGCTG+AGG 0.611592 7.2:+40354620 MS.gene46164:CDS
AAATGAATTTATCTAATGTG+GGG 0.617529 7.2:+40354607 MS.gene46164:CDS
CATTGCGAGATTGGTAGAGG+AGG 0.630723 7.2:+40353500 MS.gene46164:CDS
GATAAACCTTGATCTCTCAA+GGG 0.631373 7.2:-40354148 None:intergenic
GATAAACATAAATGTCGATG+TGG 0.637729 7.2:+40353768 MS.gene46164:CDS
ATTCGAACAATTCCACCCAA+AGG 0.640069 7.2:-40354303 None:intergenic
TACTACTTCTACTCAAGCAG+AGG 0.643833 7.2:+40353362 MS.gene46164:CDS
CAATCCGCTGATGCTTCCAA+AGG 0.646337 7.2:-40354343 None:intergenic
AATGTGGGGAATCCTGCTGA+GGG 0.657173 7.2:+40354621 MS.gene46164:CDS
AAACTCACTCTATAGAAGTG+TGG 0.661607 7.2:+40353557 MS.gene46164:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.672765 7.2:+40353573 MS.gene46164:CDS
ATTGCTTAACTTTAACTGTG+GGG 0.673850 7.2:-40354448 None:intergenic
TATCACAATCGGCATCAAGG+AGG 0.731245 7.2:+40354770 MS.gene46164:CDS
GCTGCAACCAATCAACTCAG+CGG 0.749919 7.2:+40353629 MS.gene46164:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTAATATAAATTTTACTA+TGG - chr7.2:40354800-40354819 None:intergenic 10.0%
!!! TATTACTATTTTATATATAC+AGG + chr7.2:40354053-40354072 MS.gene46164:intron 10.0%
!! AAAATGAATTTATCTAATGT+GGG + chr7.2:40354606-40354625 MS.gene46164:CDS 15.0%
!! ACAGTAATAATGATATTATT+TGG + chr7.2:40354532-40354551 MS.gene46164:CDS 15.0%
!! CAGTAATAATGATATTATTT+GGG + chr7.2:40354533-40354552 MS.gene46164:CDS 15.0%
!! TAAATATTTGATATCAAAAG+AGG + chr7.2:40354395-40354414 MS.gene46164:CDS 15.0%
!! AAATGAATTTATCTAATGTG+GGG + chr7.2:40354607-40354626 MS.gene46164:CDS 20.0%
!! GAAAATGAATTTATCTAATG+TGG + chr7.2:40354605-40354624 MS.gene46164:CDS 20.0%
!! TTTAAGAAAATCAGATAACA+AGG + chr7.2:40354221-40354240 MS.gene46164:CDS 20.0%
! AAGGAAAAAGTTATCACAAT+CGG + chr7.2:40354759-40354778 MS.gene46164:CDS 25.0%
! CTTGTATAATCAATACAGTT+TGG - chr7.2:40353891-40353910 None:intergenic 25.0%
!! AAACTAGCTTCAGAATAATT+TGG - chr7.2:40354203-40354222 None:intergenic 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG + chr7.2:40353399-40353418 MS.gene46164:CDS 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG + chr7.2:40354287-40354306 MS.gene46164:CDS 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG + chr7.2:40354288-40354307 MS.gene46164:CDS 25.0%
ATATTACCAATTCTTGAACC+TGG + chr7.2:40354474-40354493 MS.gene46164:CDS 30.0%
ATTGCTTAACTTTAACTGTG+GGG - chr7.2:40354451-40354470 None:intergenic 30.0%
GATAAACATAAATGTCGATG+TGG + chr7.2:40353768-40353787 MS.gene46164:CDS 30.0%
GATTGCTTAACTTTAACTGT+GGG - chr7.2:40354452-40354471 None:intergenic 30.0%
TATTTAAATGTTCTACGCGT+GGG + chr7.2:40354835-40354854 MS.gene46164:intron 30.0%
TCACATGTTAACTGAAGTTA+AGG + chr7.2:40354981-40355000 MS.gene46164:CDS 30.0%
TGATTGCTTAACTTTAACTG+TGG - chr7.2:40354453-40354472 None:intergenic 30.0%
TTATTTAAATGTTCTACGCG+TGG + chr7.2:40354834-40354853 MS.gene46164:intron 30.0%
TTCACATGTTACAACTTTAG+TGG + chr7.2:40353708-40353727 MS.gene46164:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG - chr7.2:40353397-40353416 None:intergenic 30.0%
TTTAGTCTGTTCAAGGAATT+TGG + chr7.2:40353912-40353931 MS.gene46164:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG + chr7.2:40354665-40354684 MS.gene46164:CDS 30.0%
! TAACATGTGAAGTACTTTGT+TGG - chr7.2:40353699-40353718 None:intergenic 30.0%
! TTTTCCTTCAAGTCATTAAG+AGG - chr7.2:40354747-40354766 None:intergenic 30.0%
!! CATTAAGAGGAGTATTCAAT+CGG - chr7.2:40354734-40354753 None:intergenic 30.0%
AAACTCACTCTATAGAAGTG+TGG + chr7.2:40353557-40353576 MS.gene46164:CDS 35.0%
AGATAAACCTTGATCTCTCA+AGG - chr7.2:40354152-40354171 None:intergenic 35.0%
AGCTTCTTAACAATGCCTTT+AGG + chr7.2:40353474-40353493 MS.gene46164:CDS 35.0%
AGTAAACCCAAAGCTGAAAT+TGG - chr7.2:40354708-40354727 None:intergenic 35.0%
ATCTGCACTAACAAATGGTT+TGG + chr7.2:40354957-40354976 MS.gene46164:CDS 35.0%
ATTTAAATGTTCTACGCGTG+GGG + chr7.2:40354836-40354855 MS.gene46164:intron 35.0%
CATGTTAACTGAAGTTAAGG+AGG + chr7.2:40354984-40355003 MS.gene46164:CDS 35.0%
CTACACCATTAACAAATCCT+TGG - chr7.2:40353833-40353852 None:intergenic 35.0%
GATAAACCTTGATCTCTCAA+GGG - chr7.2:40354151-40354170 None:intergenic 35.0%
GGTGGAATTGTTCGAATATT+TGG + chr7.2:40354309-40354328 MS.gene46164:CDS 35.0%
TACTCCTCTTAATGACTTGA+AGG + chr7.2:40354740-40354759 MS.gene46164:CDS 35.0%
TATCAAAAGAGGCTAAGAAC+AGG + chr7.2:40354406-40354425 MS.gene46164:CDS 35.0%
TCAACATCTGCACTAACAAA+TGG + chr7.2:40354952-40354971 MS.gene46164:CDS 35.0%
TCTGAATGTCACCAAAGAAA+AGG + chr7.2:40353968-40353987 MS.gene46164:CDS 35.0%
TCTGTAGCAAAATACATAGC+TGG - chr7.2:40354660-40354679 None:intergenic 35.0%
TGGCATAAAAAACCCTAGTT+CGG + chr7.2:40353932-40353951 MS.gene46164:CDS 35.0%
TTTCTTACATTTCCTTTGGG+TGG + chr7.2:40354291-40354310 MS.gene46164:CDS 35.0%
TTTGGAGAGAATTGTACCTT+TGG + chr7.2:40354327-40354346 MS.gene46164:CDS 35.0%
! CAAGCACAAAACCTTTTCTT+TGG - chr7.2:40353982-40354001 None:intergenic 35.0%
! TACAAGCTTTAGTCTGTTCA+AGG + chr7.2:40353905-40353924 MS.gene46164:CDS 35.0%
! TGGGTTCAAATTTTCAAACC+TGG + chr7.2:40354552-40354571 MS.gene46164:CDS 35.0%
!! AACAAGGTATTGTATGCTCA+AGG + chr7.2:40354237-40354256 MS.gene46164:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG + chr7.2:40354238-40354257 MS.gene46164:CDS 35.0%
AAAGCTGAAATTGGAGTCAG+TGG - chr7.2:40354699-40354718 None:intergenic 40.0%
AAGTGATCATATCGCGATAG+GGG - chr7.2:40353737-40353756 None:intergenic 40.0%
AATCTCGCAATGGTTCCTAA+AGG - chr7.2:40353492-40353511 None:intergenic 40.0%
AGTTATCACAATCGGCATCA+AGG + chr7.2:40354767-40354786 MS.gene46164:CDS 40.0%
ATCCTTGGCGGAAAGATTTA+AGG - chr7.2:40353818-40353837 None:intergenic 40.0%
ATTCGAACAATTCCACCCAA+AGG - chr7.2:40354306-40354325 None:intergenic 40.0%
CAAATCCGTCAAAGTTGACT+TGG - chr7.2:40354109-40354128 None:intergenic 40.0%
CACCATTAACAAATCCTTGG+CGG - chr7.2:40353830-40353849 None:intergenic 40.0%
CCATGATATTCATGAACACC+AGG - chr7.2:40354495-40354514 None:intergenic 40.0%
CCTGGTGTTCATGAATATCA+TGG + chr7.2:40354492-40354511 MS.gene46164:CDS 40.0%
CTGACTCCAATTTCAGCTTT+GGG + chr7.2:40354699-40354718 MS.gene46164:CDS 40.0%
GAAGTGATCATATCGCGATA+GGG - chr7.2:40353738-40353757 None:intergenic 40.0%
GCAGTGTCTTAGCATATTGA+AGG + chr7.2:40354918-40354937 MS.gene46164:intron 40.0%
GCATAACTCTTATCTACACC+AGG - chr7.2:40354573-40354592 None:intergenic 40.0%
GCTTTCCAAGTCAACTTTGA+CGG + chr7.2:40354101-40354120 MS.gene46164:CDS 40.0%
GGTGTAGATAAGAGTTATGC+TGG + chr7.2:40354573-40354592 MS.gene46164:CDS 40.0%
TACTACTTCTACTCAAGCAG+AGG + chr7.2:40353362-40353381 MS.gene46164:CDS 40.0%
TAGAGGAGGAATCTAGCATA+GGG + chr7.2:40353514-40353533 MS.gene46164:CDS 40.0%
TCAAACTAGTCCACCGAAAT+TGG - chr7.2:40354866-40354885 None:intergenic 40.0%
TGAACACCAGGTTCAAGAAT+TGG - chr7.2:40354483-40354502 None:intergenic 40.0%
TGAAGTGATCATATCGCGAT+AGG - chr7.2:40353739-40353758 None:intergenic 40.0%
TTCCTTAAATCTTTCCGCCA+AGG + chr7.2:40353813-40353832 MS.gene46164:CDS 40.0%
TTTAGGAACCATTGCGAGAT+TGG + chr7.2:40353491-40353510 MS.gene46164:CDS 40.0%
! ACCACTTCTTTTACCGAACT+AGG - chr7.2:40353948-40353967 None:intergenic 40.0%
! ACTGACTCCAATTTCAGCTT+TGG + chr7.2:40354698-40354717 MS.gene46164:CDS 40.0%
! CCACTTCTTTTACCGAACTA+GGG - chr7.2:40353947-40353966 None:intergenic 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG + chr7.2:40353426-40353445 MS.gene46164:CDS 40.0%
!! CAAGGTATTGTATGCTCAAG+GGG + chr7.2:40354239-40354258 MS.gene46164:CDS 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG - chr7.2:40353639-40353658 None:intergenic 40.0%
!! TGAAGGTTGTTTCTCTACTG+AGG + chr7.2:40353590-40353609 MS.gene46164:CDS 40.0%
!! TTCCGCCAAGGATTTGTTAA+TGG + chr7.2:40353825-40353844 MS.gene46164:CDS 40.0%
AACCATCCCTTGAGAGATCA+AGG + chr7.2:40354142-40354161 MS.gene46164:CDS 45.0%
AACCATTGCGAGATTGGTAG+AGG + chr7.2:40353497-40353516 MS.gene46164:CDS 45.0%
AACCTTGATCTCTCAAGGGA+TGG - chr7.2:40354147-40354166 None:intergenic 45.0%
AGCATAGGGCAAGTTACAGT+CGG + chr7.2:40353528-40353547 MS.gene46164:CDS 45.0%
AGTGTGGCAGATCTTGATGA+AGG + chr7.2:40353573-40353592 MS.gene46164:CDS 45.0%
CCCTAGTTCGGTAAAAGAAG+TGG + chr7.2:40353944-40353963 MS.gene46164:CDS 45.0%
CTTGTTTGCAGAAGCAGGTA+AGG + chr7.2:40353431-40353450 MS.gene46164:CDS 45.0%
GTAGAGGAGGAATCTAGCAT+AGG + chr7.2:40353513-40353532 MS.gene46164:CDS 45.0%
TATCACAATCGGCATCAAGG+AGG + chr7.2:40354770-40354789 MS.gene46164:CDS 45.0%
TTTAACTGTGGGGCAATGCA+AGG - chr7.2:40354441-40354460 None:intergenic 45.0%
!! TGTACCTTTGGAAGCATCAG+CGG + chr7.2:40354339-40354358 MS.gene46164:CDS 45.0%
AATGTGGGGAATCCTGCTGA+GGG + chr7.2:40354621-40354640 MS.gene46164:CDS 50.0%
CAATCCGCTGATGCTTCCAA+AGG - chr7.2:40354346-40354365 None:intergenic 50.0%
CATTGCGAGATTGGTAGAGG+AGG + chr7.2:40353500-40353519 MS.gene46164:CDS 50.0%
CCTGCTGAGGGTTATGTCAA+GGG + chr7.2:40354633-40354652 MS.gene46164:CDS 50.0%
CTCCTCTACCAATCTCGCAA+TGG - chr7.2:40353502-40353521 None:intergenic 50.0%
GCTGCAACCAATCAACTCAG+CGG + chr7.2:40353629-40353648 MS.gene46164:CDS 50.0%
TAATGTGGGGAATCCTGCTG+AGG + chr7.2:40354620-40354639 MS.gene46164:CDS 50.0%
TCCTGCTGAGGGTTATGTCA+AGG + chr7.2:40354632-40354651 MS.gene46164:CDS 50.0%
CCCTTGACATAACCCTCAGC+AGG - chr7.2:40354636-40354655 None:intergenic 55.0%
CGCGTGGGGCGTACCAATTT+CGG + chr7.2:40354850-40354869 MS.gene46164:intron 60.0%
GTGGGGCGTACCAATTTCGG+TGG + chr7.2:40354853-40354872 MS.gene46164:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 40353354 40355014 40353354 ID=MS.gene46164
chr7.2 mRNA 40353354 40355014 40353354 ID=MS.gene46164.t1;Parent=MS.gene46164
chr7.2 exon 40353354 40353989 40353354 ID=MS.gene46164.t1.exon1;Parent=MS.gene46164.t1
chr7.2 CDS 40353354 40353989 40353354 ID=cds.MS.gene46164.t1;Parent=MS.gene46164.t1
chr7.2 exon 40354075 40354791 40354075 ID=MS.gene46164.t1.exon2;Parent=MS.gene46164.t1
chr7.2 CDS 40354075 40354791 40354075 ID=cds.MS.gene46164.t1;Parent=MS.gene46164.t1
chr7.2 exon 40354922 40355014 40354922 ID=MS.gene46164.t1.exon3;Parent=MS.gene46164.t1
chr7.2 CDS 40354922 40355014 40354922 ID=cds.MS.gene46164.t1;Parent=MS.gene46164.t1
Gene Sequence

>MS.gene46164

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGTAAGGACTTTGTTGACATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGGAGGAATCTAGCATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAGAAGTGTGGCAGATCTTGATGAAGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATTGCAACACTCTTAAACTCAACATTGATGACAATCAACCAACAAAGTACTTCACATGTTACAACTTTAGTGGTTGCCCCTATCGCGATATGATCACTTCAACGTATAAAGATAAACATAAATGTCGATGTGGTCGTTCTTTTACAGATCAAGTTTTCCTTAAATCTTTCCGCCAAGGATTTGTTAATGGTGTAGCTACTTTTGTCATAACTGATGATCTCACTATCAAGCCAAACTGTATTGATTATACAAGCTTTAGTCTGTTCAAGGAATTTGGCATAAAAAACCCTAGTTCGGTAAAAGAAGTGGTTCTGAATGTCACCAAAGAAAAGGTTTTGTGCTTGAATATGTTTGTTCATAACTTCTCTCTTAAATTTTTGATTGATTATAATTACTATTACTATTTTATATATACAGGTACTTGATCTGCTTAAATGTTCTTTGCTTTCCAAGTCAACTTTGACGGATTTGTTTCTAGAGAAGAAACCATCCCTTGAGAGATCAAGGTTTATCTTCTGTGATGTTGAAATTAATTGCAATATCCAAATTATTCTGAAGCTAGTTTTAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGGAACAAGATTTTGCGAACTTACTTTTAAGTTTTCTTACATTTCCTTTGGGTGGAATTGTTCGAATATTTGGAGAGAATTGTACCTTTGGAAGCATCAGCGGATTGTACAAGAGTATCGTTGAGTTGAATGAAAATAAATATTTGATATCAAAAGAGGCTAAGAACAGGCTTGTTGATCCTTGCATTGCCCCACAGTTAAAGTTAAGCAATCAGATATTACCAATTCTTGAACCTGGTGTTCATGAATATCATGGTTTTGAAAGTGTTGATAACAGTAATAATGATATTATTTGGGTTCAAATTTTCAAACCTGGTGTAGATAAGAGTTATGCTGGAAATTTTAAGAAAATGAATTTATCTAATGTGGGGAATCCTGCTGAGGGTTATGTCAAGGGTCCAGCTATGTATTTTGCTACAGATGATTTGGTTTTAGCACCACTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTGAATACTCCTCTTAATGACTTGAAGGAAAAAGTTATCACAATCGGCATCAAGGAGGTAAACCATAGTAAAATTTATATTAGATTTTTAATCTTAAGTTTATTTAAATGTTCTACGCGTGGGGCGTACCAATTTCGGTGGACTAGTTTGACTTTTAAAAAATAAAATGCTTATTGTCTTGTTGCAGTGTCTTAGCATATTGAAGGCTTCTTTGACATCAACATCTGCACTAACAAATGGTTTGGCTCACATGTTAACTGAAGTTAAGGAGGAGAAATGA
Protein sequence

>MS.gene46164.t1

MAATTSTQAEEHVSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEEESSIGQVTVGCLNSLYRSVADLDEGCFSTEAIKQMLLQPINSAEDYCNTLKLNIDDNQPTKYFTCYNFSGCPYRDMITSTYKDKHKCRCGRSFTDQVFLKSFRQGFVNGVATFVITDDLTIKPNCIDYTSFSLFKEFGIKNPSSVKEVVLNVTKEKVLDLLKCSLLSKSTLTDLFLEKKPSLERSRFIFCDVEINCNIQIILKLVLRKSDNKVLYAQGEQDFANLLLSFLTFPLGGIVRIFGENCTFGSISGLYKSIVELNENKYLISKEAKNRLVDPCIAPQLKLSNQILPILEPGVHEYHGFESVDNSNNDIIWVQIFKPGVDKSYAGNFKKMNLSNVGNPAEGYVKGPAMYFATDDLVLAPLTPISALGLLNRLNTPLNDLKEKVITIGIKECLSILKASLTSTSALTNGLAHMLTEVKEEK