AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94747

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94747.t1 MTR_7g066310 58.883 394 142 4 1 374 13 406 1.36e-151 434
MS.gene94747.t1 MTR_7g066580 47.955 440 133 8 1 346 1 438 3.40e-126 370
MS.gene94747.t1 MTR_7g012680 51.402 428 123 8 1 349 20 441 4.81e-125 368
MS.gene94747.t1 MTR_7g066350 71.200 250 67 2 118 363 211 459 1.08e-113 339
MS.gene94747.t1 MTR_7g066350 63.121 141 47 1 1 141 15 150 1.00e-52 181
MS.gene94747.t1 MTR_7g066340 45.316 459 166 11 1 374 18 476 3.21e-107 323
MS.gene94747.t1 MTR_7g066400 64.427 253 78 3 118 358 190 442 1.10e-106 321
MS.gene94747.t1 MTR_7g066400 61.947 113 23 3 1 110 18 113 2.31e-33 129
MS.gene94747.t1 MTR_1g041315 69.333 225 64 2 118 337 227 451 8.08e-105 317
MS.gene94747.t1 MTR_1g041315 65.254 118 40 1 1 118 20 136 2.55e-47 168
MS.gene94747.t1 MTR_2g029400 46.455 409 128 11 2 343 21 405 4.72e-104 313
MS.gene94747.t1 MTR_1g014060 46.842 380 160 11 4 349 9 380 4.11e-95 289
MS.gene94747.t1 MTR_7g066280 42.373 413 126 7 74 374 1 413 1.47e-89 276
MS.gene94747.t1 MTR_7g066260 59.761 251 83 5 112 349 213 458 4.87e-85 266
MS.gene94747.t1 MTR_7g066260 70.536 112 30 2 1 111 21 130 1.62e-44 160
MS.gene94747.t1 MTR_7g066570 54.909 275 84 6 117 353 208 480 2.63e-80 256
MS.gene94747.t1 MTR_7g066570 68.293 123 38 1 1 123 20 141 2.93e-47 169
MS.gene94747.t1 MTR_7g066680 46.980 298 93 6 118 350 38 335 2.70e-73 232
MS.gene94747.t1 MTR_7g066490 39.467 413 155 8 1 349 22 403 5.92e-73 233
MS.gene94747.t1 MTR_7g063920 34.856 416 198 7 1 349 17 426 8.89e-71 228
MS.gene94747.t1 MTR_7g063920 28.497 193 118 8 164 347 10 191 3.39e-12 67.8
MS.gene94747.t1 MTR_7g058710 46.715 274 100 7 118 350 206 474 6.60e-65 214
MS.gene94747.t1 MTR_7g058710 56.934 137 46 2 1 137 18 141 7.90e-42 153
MS.gene94747.t1 MTR_7g058700 50.000 236 79 4 118 353 725 921 1.50e-62 216
MS.gene94747.t1 MTR_7g058700 61.765 102 24 2 9 110 533 619 2.35e-30 123
MS.gene94747.t1 MTR_7g066360 52.697 241 95 5 118 349 215 445 3.65e-62 207
MS.gene94747.t1 MTR_7g066360 68.750 112 33 1 1 112 20 129 7.60e-44 158
MS.gene94747.t1 MTR_7g062300 33.187 455 195 14 1 349 18 469 6.65e-62 206
MS.gene94747.t1 MTR_7g066290 54.622 238 77 5 118 350 219 430 3.01e-61 203
MS.gene94747.t1 MTR_7g066290 71.429 112 29 3 1 111 21 130 2.18e-43 156
MS.gene94747.t1 MTR_7g063880 35.347 447 186 16 1 349 17 458 6.80e-61 203
MS.gene94747.t1 MTR_7g066430 41.758 273 118 5 118 349 209 481 3.33e-57 194
MS.gene94747.t1 MTR_7g066430 51.818 110 52 1 1 110 10 118 2.77e-31 124
MS.gene94747.t1 MTR_3g065200 32.629 426 175 11 1 340 9 408 7.95e-52 179
MS.gene94747.t1 MTR_4g017470 29.801 453 210 10 1 349 18 466 9.42e-50 174
MS.gene94747.t1 MTR_4g017470 29.412 204 108 6 168 349 15 204 1.04e-11 66.6
MS.gene94747.t1 MTR_7g066410 38.628 277 126 4 118 350 233 509 1.96e-47 169
MS.gene94747.t1 MTR_7g066410 57.798 109 45 1 2 110 17 124 2.04e-35 136
MS.gene94747.t1 MTR_7g100420 33.418 392 180 13 1 352 45 395 1.03e-41 151
MS.gene94747.t1 MTR_7g066390 47.727 176 60 2 206 375 1 150 8.07e-41 141
MS.gene94747.t1 MTR_7g066480 38.462 234 112 4 118 349 214 417 2.57e-38 142
MS.gene94747.t1 MTR_7g066480 58.621 116 42 2 1 116 22 131 5.30e-32 125
MS.gene94747.t1 MTR_4g017830 34.875 281 131 6 118 349 220 497 2.61e-37 141
MS.gene94747.t1 MTR_4g017830 43.478 115 59 2 1 109 18 132 1.55e-19 90.5
MS.gene94747.t1 MTR_7g062280 32.830 265 138 4 118 349 224 481 6.00e-37 140
MS.gene94747.t1 MTR_7g062280 52.294 109 51 1 1 109 16 123 8.31e-28 114
MS.gene94747.t1 MTR_7g063720 37.321 209 115 3 158 350 15 223 6.01e-37 134
MS.gene94747.t1 MTR_7g063820 34.815 270 133 6 118 350 212 475 4.53e-36 137
MS.gene94747.t1 MTR_7g063820 54.310 116 51 2 1 116 16 129 3.67e-29 118
MS.gene94747.t1 MTR_4g019310 33.808 281 130 8 118 354 223 491 1.46e-35 136
MS.gene94747.t1 MTR_4g019310 42.400 125 55 3 1 117 14 129 1.57e-21 96.3
MS.gene94747.t1 MTR_3g007740 37.751 249 132 7 118 349 196 438 4.84e-35 134
MS.gene94747.t1 MTR_3g007740 52.041 98 35 1 1 98 15 100 5.31e-21 94.4
MS.gene94747.t1 MTR_7g063830 34.025 241 136 4 118 350 210 435 2.41e-33 129
MS.gene94747.t1 MTR_7g063830 50.909 110 54 0 1 110 16 125 1.60e-30 121
MS.gene94747.t1 MTR_7g063900 62.000 100 38 0 1 100 16 115 4.60e-33 129
MS.gene94747.t1 MTR_7g063900 33.813 278 129 9 118 349 210 478 7.23e-26 108
MS.gene94747.t1 MTR_4g019340 35.743 249 132 5 118 341 256 501 6.32e-33 129
MS.gene94747.t1 MTR_4g019340 43.333 120 57 1 1 109 44 163 6.04e-20 91.7
MS.gene94747.t1 MTR_4g019340 33.628 113 68 2 4 116 312 417 7.39e-12 67.0
MS.gene94747.t1 MTR_7g063660 54.206 107 48 1 1 107 15 120 2.66e-32 127
MS.gene94747.t1 MTR_7g063660 31.835 267 143 5 118 350 207 468 6.82e-32 125
MS.gene94747.t1 MTR_7g063840 32.319 263 140 6 118 349 208 463 7.50e-32 125
MS.gene94747.t1 MTR_7g063840 56.000 100 44 0 1 100 16 115 1.40e-27 113
MS.gene94747.t1 MTR_7g063670 34.510 255 152 6 118 361 208 458 4.93e-31 123
MS.gene94747.t1 MTR_7g063670 44.762 105 45 2 1 105 21 112 3.81e-17 82.8
MS.gene94747.t1 MTR_7g063890 53.448 116 49 2 1 116 33 143 5.04e-31 123
MS.gene94747.t1 MTR_7g063890 36.000 275 127 9 118 349 226 494 3.75e-24 103
MS.gene94747.t1 MTR_4g017610 33.712 264 134 9 118 350 223 476 1.28e-29 119
MS.gene94747.t1 MTR_4g017610 47.414 116 53 3 2 109 20 135 1.52e-22 99.0
MS.gene94747.t1 MTR_4g017550 32.246 276 140 9 118 349 197 469 1.12e-28 116
MS.gene94747.t1 MTR_7g062270 56.000 100 44 0 1 100 16 115 3.60e-28 114
MS.gene94747.t1 MTR_4g017440 31.522 276 142 5 118 349 226 498 5.45e-28 115
MS.gene94747.t1 MTR_4g017440 44.538 119 54 3 1 107 20 138 4.86e-20 92.0
MS.gene94747.t1 MTR_7g063850 30.544 239 123 6 159 364 60 288 8.66e-27 108
MS.gene94747.t1 MTR_4g017410 31.439 264 141 8 118 349 225 480 4.60e-24 103
MS.gene94747.t1 MTR_4g017410 46.218 119 54 2 1 109 15 133 1.20e-23 102
MS.gene94747.t1 MTR_8g445860 28.696 230 119 6 158 346 6 231 2.23e-21 92.4
MS.gene94747.t1 MTR_8g445860 36.709 79 45 1 1 79 19 92 5.90e-11 62.4
MS.gene94747.t1 MTR_2g067310 66.129 62 21 0 6 67 58 119 1.84e-20 89.7
MS.gene94747.t1 MTR_0150s0010 28.444 225 119 4 163 346 8 231 2.22e-19 86.7
MS.gene94747.t1 MTR_0150s0010 39.241 79 43 1 1 79 16 89 5.47e-11 62.4
MS.gene94747.t1 MTR_1g115440 29.515 227 114 8 164 347 10 233 3.98e-19 85.9
MS.gene94747.t1 MTR_4g019240 47.126 87 38 3 2 80 20 106 2.72e-16 76.6
MS.gene94747.t1 MTR_7g063760 47.297 74 37 2 289 361 2 74 3.23e-14 67.8
MS.gene94747.t1 MTR_1g115450 37.975 79 44 1 1 79 13 86 2.15e-12 64.7
MS.gene94747.t1 MTR_8g023240 26.022 269 152 8 118 347 223 483 1.26e-11 66.2
MS.gene94747.t1 MTR_1g115455 31.933 119 67 4 1 113 15 125 1.72e-11 63.9
MS.gene94747.t1 MTR_1g115470 39.506 81 44 1 1 81 12 87 7.94e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94747.t1 AT3G09110 48.598 107 54 1 1 107 15 120 6.23e-26 107
MS.gene94747.t1 AT3G09140 45.133 113 59 2 1 111 15 126 4.71e-23 100
MS.gene94747.t1 AT3G09140 29.520 271 143 7 118 349 228 489 1.23e-20 93.6
MS.gene94747.t1 AT3G09140 45.133 113 59 2 1 111 15 126 4.87e-23 100
MS.gene94747.t1 AT3G09140 29.520 271 143 7 118 349 256 517 1.44e-20 93.6
MS.gene94747.t1 AT5G01140 29.434 265 146 7 118 350 193 448 1.72e-22 99.0
MS.gene94747.t1 AT5G01120 44.762 105 57 1 1 105 15 118 4.01e-22 98.2
MS.gene94747.t1 AT5G01120 27.758 281 142 7 118 349 217 485 6.52e-20 91.7
MS.gene94747.t1 AT5G43240 42.105 114 61 2 1 110 15 127 9.94e-22 97.1
MS.gene94747.t1 AT5G43240 30.292 274 145 9 118 349 220 489 1.31e-18 87.8
MS.gene94747.t1 AT5G43240 42.105 114 61 2 1 110 15 127 9.94e-22 97.1
MS.gene94747.t1 AT5G43240 30.292 274 145 9 118 349 220 489 1.31e-18 87.8
MS.gene94747.t1 AT5G43240 42.105 114 61 2 1 110 15 127 9.94e-22 97.1
MS.gene94747.t1 AT5G43240 30.292 274 145 9 118 349 220 489 1.31e-18 87.8
MS.gene94747.t1 AT5G01130 28.685 251 145 8 118 349 205 440 2.34e-20 92.4
MS.gene94747.t1 AT5G01130 40.367 109 59 1 2 104 16 124 6.50e-18 85.5
MS.gene94747.t1 AT3G09120 45.361 97 52 1 1 97 12 107 5.39e-20 90.1
MS.gene94747.t1 AT5G01150 45.000 100 55 0 1 100 15 114 5.99e-20 91.7
MS.gene94747.t1 AT5G01150 30.088 226 118 7 158 349 256 475 1.91e-16 81.3
MS.gene94747.t1 AT5G43240 30.104 289 154 10 105 349 61 345 1.41e-18 86.7
MS.gene94747.t1 AT5G37320 40.196 102 59 2 5 105 19 119 3.07e-17 83.6
MS.gene94747.t1 AT5G37320 26.766 269 138 9 121 350 228 476 7.34e-14 73.2

Find 80 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTCAGTTTCATATTT+TGG 0.076946 7.1:-35501519 None:intergenic
CCCTTTCTTCCACGTCATTA+AGG 0.156917 7.1:-35502543 None:intergenic
TGACTGACTTTATCTTTAAA+AGG 0.177394 7.1:+35501993 MS.gene94747:CDS
CTAGTAAATCCTCCTGAAAT+AGG 0.201033 7.1:-35502427 None:intergenic
CAAGAAATCTATGGGAGTTT+TGG 0.225060 7.1:+35502041 MS.gene94747:CDS
CGGCCTCAACCTTTGCATTA+TGG 0.233958 7.1:+35502737 MS.gene94747:CDS
GATCCTAAATCCCCTATTTC+AGG 0.246380 7.1:+35502415 MS.gene94747:CDS
CCTCCTGAAATAGGGGATTT+AGG 0.250440 7.1:-35502418 None:intergenic
CAAAACTCCCATAGATTTCT+TGG 0.250653 7.1:-35502040 None:intergenic
TTTCCCGGCAGTATGGAATT+AGG 0.305303 7.1:+35502335 MS.gene94747:CDS
TCTTTCTAAATATGAAATAA+TGG 0.315423 7.1:-35502509 None:intergenic
ATTTAGACCCAAGAAATCTA+TGG 0.325037 7.1:+35502032 MS.gene94747:CDS
TAGTAAATCCTCCTGAAATA+GGG 0.341655 7.1:-35502426 None:intergenic
AATATGGAAGCAGTAAAATT+TGG 0.347826 7.1:+35501385 MS.gene94747:CDS
CGTGGCTAAGGAGTCAAATA+TGG 0.360424 7.1:+35501369 MS.gene94747:CDS
CCTCCTCTTTCCCGGCAGTA+TGG 0.364490 7.1:+35502328 MS.gene94747:CDS
CCTTTCTTCCACGTCATTAA+GGG 0.369088 7.1:-35502542 None:intergenic
TCTGCCACCATGAATGTTAC+TGG 0.369545 7.1:-35502454 None:intergenic
ACAGAAGAAGTTTGACTTCA+AGG 0.383899 7.1:-35501554 None:intergenic
GCAGTGTTACATGTGCTTCA+AGG 0.393480 7.1:+35502202 MS.gene94747:CDS
ATCTTGACCAACAATATATA+TGG 0.395510 7.1:+35501440 MS.gene94747:CDS
AGCTTCTTAACATTGCCTTT+AGG 0.397252 7.1:+35501331 MS.gene94747:CDS
AAAGTTGTTTATGTAGAGGC+TGG 0.400881 7.1:+35501283 MS.gene94747:CDS
TCAACATATTTATAATAGAT+AGG 0.404479 7.1:-35502394 None:intergenic
TAACCAGACCTCCTCTTTCC+CGG 0.412402 7.1:+35502320 MS.gene94747:CDS
GAAGTTTGACTTCAAGGGTT+CGG 0.417488 7.1:-35501548 None:intergenic
ACAACTTCTGCTTTGACAAA+CGG 0.425867 7.1:+35502717 MS.gene94747:CDS
CAGAAGAAGTTTGACTTCAA+GGG 0.429394 7.1:-35501553 None:intergenic
TAAAGATAAAGTCAGTCAAA+GGG 0.446934 7.1:-35501988 None:intergenic
AGTTATGTAACGGTAATATC+TGG 0.450579 7.1:-35502360 None:intergenic
CCCTTAATGACGTGGAAGAA+AGG 0.451121 7.1:+35502542 MS.gene94747:CDS
AAAACTCCCATAGATTTCTT+GGG 0.461452 7.1:-35502039 None:intergenic
GACTGACTTTATCTTTAAAA+GGG 0.464589 7.1:+35501994 MS.gene94747:CDS
CTGCCGGGAAAGAGGAGGTC+TGG 0.472647 7.1:-35502323 None:intergenic
CAGTGTTACATGTGCTTCAA+GGG 0.473386 7.1:+35502203 MS.gene94747:CDS
CTACTCAAGCCAAGAAACTC+GGG 0.477370 7.1:+35501484 MS.gene94747:CDS
TTCATATTTAGAAAGAATGA+AGG 0.482812 7.1:+35502516 MS.gene94747:CDS
TTAAAGATAAAGTCAGTCAA+AGG 0.488360 7.1:-35501989 None:intergenic
ACGTGGAAGAAAGGGTCATC+AGG 0.490313 7.1:+35502551 MS.gene94747:CDS
GGTTCCTAATTCCATACTGC+CGG 0.491898 7.1:-35502339 None:intergenic
GTACATGACTTGGTTGAGTC+CGG 0.495962 7.1:+35502261 MS.gene94747:CDS
TGTTTATGTAGAGGCTGGGA+AGG 0.499987 7.1:+35501288 MS.gene94747:CDS
TAGAGGTCCAGTAACATTCA+TGG 0.501593 7.1:+35502447 MS.gene94747:CDS
GAAGAAAGTTGTTTATGTAG+AGG 0.504265 7.1:+35501279 MS.gene94747:CDS
GAGTTATGGTGGACAAAGAA+AGG 0.506158 7.1:+35501257 None:intergenic
AGACAATCCTTCTGATGAAA+TGG 0.507091 7.1:+35502075 MS.gene94747:CDS
GCTACTCAAGCCAAGAAACT+CGG 0.517391 7.1:+35501483 MS.gene94747:CDS
AAGTTGTTTATGTAGAGGCT+GGG 0.518284 7.1:+35501284 MS.gene94747:CDS
GGTCATCAGGATTGGTCGGA+AGG 0.519466 7.1:+35502564 MS.gene94747:CDS
TTCACAACCATTTCATCAGA+AGG 0.520257 7.1:-35502082 None:intergenic
ATTCATGGTGGCAGACGACT+TGG 0.520933 7.1:+35502462 MS.gene94747:CDS
TCTGTGACCATATATATTGT+TGG 0.521715 7.1:-35501447 None:intergenic
TTTAGACCCAAGAAATCTAT+GGG 0.526049 7.1:+35502033 MS.gene94747:CDS
CCTTAATGACGTGGAAGAAA+GGG 0.526797 7.1:+35502543 MS.gene94747:CDS
ATTCCATACTGCCGGGAAAG+AGG 0.532113 7.1:-35502331 None:intergenic
GAAGAAAGGGTCATCAGGAT+TGG 0.539346 7.1:+35502556 MS.gene94747:CDS
CTTTCTTCCACGTCATTAAG+GGG 0.544228 7.1:-35502541 None:intergenic
TCTGACAATAAACATCTATC+CGG 0.552620 7.1:-35502280 None:intergenic
ATTTATATAAGTACATGACT+TGG 0.553155 7.1:+35502251 MS.gene94747:CDS
TATTGCACGACTCGTGGCTA+AGG 0.555083 7.1:+35501357 MS.gene94747:CDS
AGTAAATCCTCCTGAAATAG+GGG 0.565277 7.1:-35502425 None:intergenic
GTTCCTAATTCCATACTGCC+GGG 0.566535 7.1:-35502338 None:intergenic
TTACCGTTACATAACTACCT+TGG 0.569352 7.1:+35502367 MS.gene94747:CDS
GCGCCATAATGCAAAGGTTG+AGG 0.570536 7.1:-35502740 None:intergenic
AAAGGGTCATCAGGATTGGT+CGG 0.579181 7.1:+35502560 MS.gene94747:CDS
AGTCGTGCAATAGTACCTAA+AGG 0.584213 7.1:-35501346 None:intergenic
AGGTACTATTGCACGACTCG+TGG 0.591324 7.1:+35501351 MS.gene94747:CDS
CATCAGGATTGGTCGGAAGG+AGG 0.604323 7.1:+35502567 MS.gene94747:CDS
ATTTCAGGAGGATTTACTAG+AGG 0.604666 7.1:+35502430 MS.gene94747:CDS
CCTAAATCCCCTATTTCAGG+AGG 0.607949 7.1:+35502418 MS.gene94747:CDS
TGAATTGCGCCATAATGCAA+AGG 0.608544 7.1:-35502746 None:intergenic
ATAATGGAAATAGAAGACAT+TGG 0.642081 7.1:-35502493 None:intergenic
TTACCAAGGTAGTTATGTAA+CGG 0.643864 7.1:-35502370 None:intergenic
TACTCAAGCCAAGAAACTCG+GGG 0.647198 7.1:+35501485 MS.gene94747:CDS
TATAATAGATAGGATTACCA+AGG 0.651859 7.1:-35502384 None:intergenic
TTTCTTCCACGTCATTAAGG+GGG 0.652161 7.1:-35502540 None:intergenic
AAAGATAAAGTCAGTCAAAG+GGG 0.655613 7.1:-35501987 None:intergenic
CCATACTGCCGGGAAAGAGG+AGG 0.657000 7.1:-35502328 None:intergenic
AGGTCCAGTAACATTCATGG+TGG 0.740271 7.1:+35502450 MS.gene94747:CDS
ACTCAAGCCAAGAAACTCGG+GGG 0.752288 7.1:+35501486 MS.gene94747:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACATATTTATAATAGAT+AGG - chr7.1:35502397-35502416 None:intergenic 15.0%
!! TCTTTCTAAATATGAAATAA+TGG - chr7.1:35502512-35502531 None:intergenic 15.0%
!! AGTTTGTATACTCAAATTTA+GGG - chr7.1:35501674-35501693 None:intergenic 20.0%
!! ATTTATATAAGTACATGACT+TGG + chr7.1:35502251-35502270 MS.gene94747:CDS 20.0%
!! TTCATATTTAGAAAGAATGA+AGG + chr7.1:35502516-35502535 MS.gene94747:CDS 20.0%
!!! ATGCAAACAAATATTGTTTT+AGG - chr7.1:35502657-35502676 None:intergenic 20.0%
!!! TGCAAACAAATATTGTTTTA+GGG - chr7.1:35502656-35502675 None:intergenic 20.0%
! AATATGGAAGCAGTAAAATT+TGG + chr7.1:35501385-35501404 MS.gene94747:CDS 25.0%
! ATCTTGACCAACAATATATA+TGG + chr7.1:35501440-35501459 MS.gene94747:CDS 25.0%
! CAGTTTGTATACTCAAATTT+AGG - chr7.1:35501675-35501694 None:intergenic 25.0%
! CTAAATTTGAGTATACAAAC+TGG + chr7.1:35501673-35501692 MS.gene94747:intron 25.0%
! GTTTGTATACTCAAATTTAG+GGG - chr7.1:35501673-35501692 None:intergenic 25.0%
! TAAAGATAAAGTCAGTCAAA+GGG - chr7.1:35501991-35502010 None:intergenic 25.0%
! TATAATAGATAGGATTACCA+AGG - chr7.1:35502387-35502406 None:intergenic 25.0%
! TTAAAGATAAAGTCAGTCAA+AGG - chr7.1:35501992-35502011 None:intergenic 25.0%
!! ATAATGGAAATAGAAGACAT+TGG - chr7.1:35502496-35502515 None:intergenic 25.0%
!! CAATGTTCAGTTTCATATTT+TGG - chr7.1:35501522-35501541 None:intergenic 25.0%
!! GACTGACTTTATCTTTAAAA+GGG + chr7.1:35501994-35502013 MS.gene94747:CDS 25.0%
!! TATTTTCAACTTTGCAATTC+TGG - chr7.1:35501585-35501604 None:intergenic 25.0%
!! TGACTGACTTTATCTTTAAA+AGG + chr7.1:35501993-35502012 MS.gene94747:CDS 25.0%
AAAACTCCCATAGATTTCTT+GGG - chr7.1:35502042-35502061 None:intergenic 30.0%
AAAGATAAAGTCAGTCAAAG+GGG - chr7.1:35501990-35502009 None:intergenic 30.0%
AGTTATGTAACGGTAATATC+TGG - chr7.1:35502363-35502382 None:intergenic 30.0%
ATTTAGACCCAAGAAATCTA+TGG + chr7.1:35502032-35502051 MS.gene94747:CDS 30.0%
CATCAAATCTTGGTATGAAT+AGG + chr7.1:35501928-35501947 MS.gene94747:intron 30.0%
CGCAATTCATGAATGAAAAA+AGG + chr7.1:35502760-35502779 MS.gene94747:CDS 30.0%
CTCTTTCTTGCTGATATTAA+CGG - chr7.1:35501827-35501846 None:intergenic 30.0%
GAAGAAAGTTGTTTATGTAG+AGG + chr7.1:35501279-35501298 MS.gene94747:CDS 30.0%
TAATCTCTGTCATCAAATCT+TGG + chr7.1:35501918-35501937 MS.gene94747:intron 30.0%
TAGTAAATCCTCCTGAAATA+GGG - chr7.1:35502429-35502448 None:intergenic 30.0%
TCTGACAATAAACATCTATC+CGG - chr7.1:35502283-35502302 None:intergenic 30.0%
TCTGTGACCATATATATTGT+TGG - chr7.1:35501450-35501469 None:intergenic 30.0%
TTACCAAGGTAGTTATGTAA+CGG - chr7.1:35502373-35502392 None:intergenic 30.0%
TTATATCTCGTTCAGAAGTA+TGG + chr7.1:35501769-35501788 MS.gene94747:intron 30.0%
TTTAGACCCAAGAAATCTAT+GGG + chr7.1:35502033-35502052 MS.gene94747:CDS 30.0%
! AAACTTGTTCCATCAACATT+CGG - chr7.1:35501751-35501770 None:intergenic 30.0%
!! GATTTTGTTTGTTGAAGCAA+AGG + chr7.1:35502132-35502151 MS.gene94747:CDS 30.0%
!! TATACAAACTGGCTTTGTTA+AGG + chr7.1:35501684-35501703 MS.gene94747:intron 30.0%
!! TTAAACTTCACTTTGGAGTT+TGG + chr7.1:35502602-35502621 MS.gene94747:intron 30.0%
AAAGTTGTTTATGTAGAGGC+TGG + chr7.1:35501283-35501302 MS.gene94747:CDS 35.0%
AAGTTGTTTATGTAGAGGCT+GGG + chr7.1:35501284-35501303 MS.gene94747:CDS 35.0%
ACAACTTCTGCTTTGACAAA+CGG + chr7.1:35502717-35502736 MS.gene94747:CDS 35.0%
AGACAATCCTTCTGATGAAA+TGG + chr7.1:35502075-35502094 MS.gene94747:CDS 35.0%
AGCTTCTTAACATTGCCTTT+AGG + chr7.1:35501331-35501350 MS.gene94747:CDS 35.0%
AGTAAATCCTCCTGAAATAG+GGG - chr7.1:35502428-35502447 None:intergenic 35.0%
ATTTCAGGAGGATTTACTAG+AGG + chr7.1:35502430-35502449 MS.gene94747:CDS 35.0%
CAAAACTCCCATAGATTTCT+TGG - chr7.1:35502043-35502062 None:intergenic 35.0%
CACTGTGTTAAACTTCACTT+TGG + chr7.1:35502595-35502614 MS.gene94747:intron 35.0%
CGTTAATATCAGCAAGAAAG+AGG + chr7.1:35501825-35501844 MS.gene94747:intron 35.0%
CTAGTAAATCCTCCTGAAAT+AGG - chr7.1:35502430-35502449 None:intergenic 35.0%
TCAAATTTAGGGGAACTTCT+CGG - chr7.1:35501663-35501682 None:intergenic 35.0%
TTACCGTTACATAACTACCT+TGG + chr7.1:35502367-35502386 MS.gene94747:CDS 35.0%
TTCACAACCATTTCATCAGA+AGG - chr7.1:35502085-35502104 None:intergenic 35.0%
! ACAGAAGAAGTTTGACTTCA+AGG - chr7.1:35501557-35501576 None:intergenic 35.0%
! ATTTGTTTGCATGATGATGC+AGG + chr7.1:35502665-35502684 MS.gene94747:intron 35.0%
! CAAGAAATCTATGGGAGTTT+TGG + chr7.1:35502041-35502060 MS.gene94747:CDS 35.0%
! CAGAAGAAGTTTGACTTCAA+GGG - chr7.1:35501556-35501575 None:intergenic 35.0%
! TTTCAAGCTTTGCTCTTTTG+TGG - chr7.1:35502797-35502816 None:intergenic 35.0%
! TTTGTTTGCATGATGATGCA+GGG + chr7.1:35502666-35502685 MS.gene94747:intron 35.0%
!!! AATCTATGGGAGTTTTGGAT+TGG + chr7.1:35502046-35502065 MS.gene94747:CDS 35.0%
AATGTGATGCCGAATGTTGA+TGG + chr7.1:35501739-35501758 MS.gene94747:intron 40.0%
AGTCGTGCAATAGTACCTAA+AGG - chr7.1:35501349-35501368 None:intergenic 40.0%
CAGTGTTACATGTGCTTCAA+GGG + chr7.1:35502203-35502222 MS.gene94747:CDS 40.0%
CCTTAATGACGTGGAAGAAA+GGG + chr7.1:35502543-35502562 MS.gene94747:CDS 40.0%
CCTTTCTTCCACGTCATTAA+GGG - chr7.1:35502545-35502564 None:intergenic 40.0%
CTTTCTTCCACGTCATTAAG+GGG - chr7.1:35502544-35502563 None:intergenic 40.0%
GATCCTAAATCCCCTATTTC+AGG + chr7.1:35502415-35502434 MS.gene94747:CDS 40.0%
TAGAGGTCCAGTAACATTCA+TGG + chr7.1:35502447-35502466 MS.gene94747:CDS 40.0%
TGAATTGCGCCATAATGCAA+AGG - chr7.1:35502749-35502768 None:intergenic 40.0%
TTTCTTCCACGTCATTAAGG+GGG - chr7.1:35502543-35502562 None:intergenic 40.0%
! AGTTTTCTCACCATTCCCTT+GGG + chr7.1:35502178-35502197 MS.gene94747:CDS 40.0%
! GAAGTTTGACTTCAAGGGTT+CGG - chr7.1:35501551-35501570 None:intergenic 40.0%
! TAGTTTTCTCACCATTCCCT+TGG + chr7.1:35502177-35502196 MS.gene94747:CDS 40.0%
AGGTCCAGTAACATTCATGG+TGG + chr7.1:35502450-35502469 MS.gene94747:CDS 45.0%
CCCTTAATGACGTGGAAGAA+AGG + chr7.1:35502542-35502561 MS.gene94747:CDS 45.0%
CCCTTTCTTCCACGTCATTA+AGG - chr7.1:35502546-35502565 None:intergenic 45.0%
CCTAAATCCCCTATTTCAGG+AGG + chr7.1:35502418-35502437 MS.gene94747:CDS 45.0%
CCTCCTGAAATAGGGGATTT+AGG - chr7.1:35502421-35502440 None:intergenic 45.0%
CGTGGCTAAGGAGTCAAATA+TGG + chr7.1:35501369-35501388 MS.gene94747:CDS 45.0%
CTACTCAAGCCAAGAAACTC+GGG + chr7.1:35501484-35501503 MS.gene94747:CDS 45.0%
GAAGAAAGGGTCATCAGGAT+TGG + chr7.1:35502556-35502575 MS.gene94747:CDS 45.0%
GCAGTGTTACATGTGCTTCA+AGG + chr7.1:35502202-35502221 MS.gene94747:CDS 45.0%
GCTACTCAAGCCAAGAAACT+CGG + chr7.1:35501483-35501502 MS.gene94747:CDS 45.0%
GGTTCCTAATTCCATACTGC+CGG - chr7.1:35502342-35502361 None:intergenic 45.0%
GTTCCTAATTCCATACTGCC+GGG - chr7.1:35502341-35502360 None:intergenic 45.0%
TAATAAGCCCCCGAGTTTCT+TGG - chr7.1:35501496-35501515 None:intergenic 45.0%
TACTCAAGCCAAGAAACTCG+GGG + chr7.1:35501485-35501504 MS.gene94747:CDS 45.0%
TCTGCCACCATGAATGTTAC+TGG - chr7.1:35502457-35502476 None:intergenic 45.0%
TGTTTATGTAGAGGCTGGGA+AGG + chr7.1:35501288-35501307 MS.gene94747:CDS 45.0%
TTTCCCGGCAGTATGGAATT+AGG + chr7.1:35502335-35502354 MS.gene94747:CDS 45.0%
! AAAGGGTCATCAGGATTGGT+CGG + chr7.1:35502560-35502579 MS.gene94747:CDS 45.0%
! GTTTTCTCACCATTCCCTTG+GGG + chr7.1:35502179-35502198 MS.gene94747:CDS 45.0%
! TTTTCTCACCATTCCCTTGG+GGG + chr7.1:35502180-35502199 MS.gene94747:CDS 45.0%
!! GTACATGACTTGGTTGAGTC+CGG + chr7.1:35502261-35502280 MS.gene94747:CDS 45.0%
ACATGTAACACTGCCCCCAA+GGG - chr7.1:35502196-35502215 None:intergenic 50.0%
ACGTGGAAGAAAGGGTCATC+AGG + chr7.1:35502551-35502570 MS.gene94747:CDS 50.0%
ACTCAAGCCAAGAAACTCGG+GGG + chr7.1:35501486-35501505 MS.gene94747:CDS 50.0%
AGGGGAACTTCTCGGTTCAA+TGG - chr7.1:35501655-35501674 None:intergenic 50.0%
AGGTACTATTGCACGACTCG+TGG + chr7.1:35501351-35501370 MS.gene94747:CDS 50.0%
ATTCATGGTGGCAGACGACT+TGG + chr7.1:35502462-35502481 MS.gene94747:CDS 50.0%
ATTCCATACTGCCGGGAAAG+AGG - chr7.1:35502334-35502353 None:intergenic 50.0%
CGGCCTCAACCTTTGCATTA+TGG + chr7.1:35502737-35502756 MS.gene94747:CDS 50.0%
GCGCCATAATGCAAAGGTTG+AGG - chr7.1:35502743-35502762 None:intergenic 50.0%
TAACCAGACCTCCTCTTTCC+CGG + chr7.1:35502320-35502339 MS.gene94747:CDS 50.0%
TATTGCACGACTCGTGGCTA+AGG + chr7.1:35501357-35501376 MS.gene94747:CDS 50.0%
CACATGTAACACTGCCCCCA+AGG - chr7.1:35502197-35502216 None:intergenic 55.0%
GAAGGTCCCCCTTAATGACG+TGG + chr7.1:35502534-35502553 MS.gene94747:CDS 55.0%
TAACACTGCCCCCAAGGGAA+TGG - chr7.1:35502191-35502210 None:intergenic 55.0%
!! CATCAGGATTGGTCGGAAGG+AGG + chr7.1:35502567-35502586 MS.gene94747:CDS 55.0%
!! GGATTGGTCGGAAGGAGGTA+AGG + chr7.1:35502572-35502591 MS.gene94747:intron 55.0%
!! GGTCATCAGGATTGGTCGGA+AGG + chr7.1:35502564-35502583 MS.gene94747:CDS 55.0%
CCATACTGCCGGGAAAGAGG+AGG - chr7.1:35502331-35502350 None:intergenic 60.0%
CCTCCTCTTTCCCGGCAGTA+TGG + chr7.1:35502328-35502347 MS.gene94747:CDS 60.0%
CTGCCGGGAAAGAGGAGGTC+TGG - chr7.1:35502326-35502345 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 35501262 35502824 35501262 ID=MS.gene94747
chr7.1 mRNA 35501262 35502824 35501262 ID=MS.gene94747.t1;Parent=MS.gene94747
chr7.1 exon 35501262 35501612 35501262 ID=MS.gene94747.t1.exon1;Parent=MS.gene94747.t1
chr7.1 CDS 35501262 35501612 35501262 ID=cds.MS.gene94747.t1;Parent=MS.gene94747.t1
chr7.1 exon 35501950 35502588 35501950 ID=MS.gene94747.t1.exon2;Parent=MS.gene94747.t1
chr7.1 CDS 35501950 35502588 35501950 ID=cds.MS.gene94747.t1;Parent=MS.gene94747.t1
chr7.1 exon 35502687 35502824 35502687 ID=MS.gene94747.t1.exon3;Parent=MS.gene94747.t1
chr7.1 CDS 35502687 35502824 35502687 ID=cds.MS.gene94747.t1;Parent=MS.gene94747.t1
Gene Sequence

>MS.gene94747

ATGGTGGACAAAGAAAGGAAGAAAGTTGTTTATGTAGAGGCTGGGAAGGATTTTGTTGATGTTCTCTTCAGCTTCTTAACATTGCCTTTAGGTACTATTGCACGACTCGTGGCTAAGGAGTCAAATATGGAAGCAGTAAAATTTGGCAGCATTAGCTCACTCTATCAAAGTGTTTCAGATCTTGACCAACAATATATATGGTCACAGACATGCAAAGAAATGCTACTCAAGCCAAGAAACTCGGGGGCTTATTATATCCAAAATATGAAACTGAACATTGATGACACCGAACCCTTGAAGTCAAACTTCTTCTGTGAGAACCAGAATTGCAAAGTTGAAAATAAGTGCTGTGTGAGTTTCTACAGAAATCAAACATGTATTTGTCGAAAGCCATTGAACCGAGAAGTTCCCCTAAATTTGAGTATACAAACTGGCTTTGTTAAGGAAAATTTGACTTTTATTGTTTCTGACGATCTTAATGTGATGCCGAATGTTGATGGAACAAGTTTATATCTCGTTCAGAAGTATGGAATCAAAGACATTGATGCTATTGATATACAAACCGTTAATATCAGCAAGAAAGAGGCATGTTTTCTATGTTTATATGTCATCTTTTCTGTTTATAGTAACTATATTGTTTTCTGTCATTAATTCTCTAATCTCTGTCATCAAATCTTGGTATGAATAGGTAGTAGATATTCTCAAGTTGATTTTGATATCAAAGACCCCTTTGACTGACTTTATCTTTAAAAGGGAGCAATCTGTTGTTAATTTAGACCCAAGAAATCTATGGGAGTTTTGGATTGGAGATGTAGACAATCCTTCTGATGAAATGGTTGTGAAAGTATTAAGAAGAAAATCAACTGCACAGATTTTGTTTGTTGAAGCAAAGGAAGATTTTGCTGACTTTGTCTTTAGTTTTCTCACCATTCCCTTGGGGGCAGTGTTACATGTGCTTCAAGGGTTCTCTTTTTTAAGCTGCATTGATAATTTATATAAGTACATGACTTGGTTGAGTCCGGATAGATGTTTATTGTCAGAAGAAGTCAAAGATAAACTAACCAGACCTCCTCTTTCCCGGCAGTATGGAATTAGGAACCAGATATTACCGTTACATAACTACCTTGGTAATCCTATCTATTATAAATATGTTGATCCTAAATCCCCTATTTCAGGAGGATTTACTAGAGGTCCAGTAACATTCATGGTGGCAGACGACTTGGTTGTGACACCAATGTCTTCTATTTCCATTATTTCATATTTAGAAAGAATGAAGGTCCCCCTTAATGACGTGGAAGAAAGGGTCATCAGGATTGGTCGGAAGGAGGTAAGGCACTGTGTTAAACTTCACTTTGGAGTTTGGAAACAGTTACTATTACTTGTATACGATTCCCTAAAACAATATTTGTTTGCATGATGATGCAGGGTCTCAGCATATTAAAAGCTTCATTGACGACAACTTCTGCTTTGACAAACGGCCTCAACCTTTGCATTATGGCGCAATTCATGAATGAAAAAAGGTCTCAGTCTAGCCACAAAAGAGCAAAGCTTGAAAGAACATAA
Protein sequence

>MS.gene94747.t1

MVDKERKKVVYVEAGKDFVDVLFSFLTLPLGTIARLVAKESNMEAVKFGSISSLYQSVSDLDQQYIWSQTCKEMLLKPRNSGAYYIQNMKLNIDDTEPLKSNFFCENQNCKVENKCCVVDILKLILISKTPLTDFIFKREQSVVNLDPRNLWEFWIGDVDNPSDEMVVKVLRRKSTAQILFVEAKEDFADFVFSFLTIPLGAVLHVLQGFSFLSCIDNLYKYMTWLSPDRCLLSEEVKDKLTRPPLSRQYGIRNQILPLHNYLGNPIYYKYVDPKSPISGGFTRGPVTFMVADDLVVTPMSSISIISYLERMKVPLNDVEERVIRIGRKEGLSILKASLTTTSALTNGLNLCIMAQFMNEKRSQSSHKRAKLERT