AlfalfaGEDB | MS.gene94747

M. sativa cultivar XinJiangDaYe / MS.gene94747

KEGG: -
GO: -
PFAM: PF05056.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94747.t1	XP_013449065.1	58.7	446	100	3	1	363	15	459	4.00E-131	478

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94747.t1	A0A072U0C3	58.7	446	100	3	1	363	15	459	2.9e-131	478.0

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene001103	MS.gene94747	PPI
MS.gene001108	MS.gene94747	PPI
MS.gene001109	MS.gene94747	PPI
MS.gene007488	MS.gene94747	PPI
MS.gene009400	MS.gene94747	PPI
MS.gene010675	MS.gene94747	PPI
MS.gene037535	MS.gene94747	PPI
MS.gene037539	MS.gene94747	PPI
MS.gene037540	MS.gene94747	PPI
MS.gene037545	MS.gene94747	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94747.t1	MTR_7g066310	58.883	394	142	4	1	374	13	406	1.36e-151	434
MS.gene94747.t1	MTR_7g066580	47.955	440	133	8	1	346	1	438	3.40e-126	370
MS.gene94747.t1	MTR_7g012680	51.402	428	123	8	1	349	20	441	4.81e-125	368
MS.gene94747.t1	MTR_7g066350	71.200	250	67	2	118	363	211	459	1.08e-113	339
MS.gene94747.t1	MTR_7g066350	63.121	141	47	1	1	141	15	150	1.00e-52	181
MS.gene94747.t1	MTR_7g066340	45.316	459	166	11	1	374	18	476	3.21e-107	323
MS.gene94747.t1	MTR_7g066400	64.427	253	78	3	118	358	190	442	1.10e-106	321
MS.gene94747.t1	MTR_7g066400	61.947	113	23	3	1	110	18	113	2.31e-33	129
MS.gene94747.t1	MTR_1g041315	69.333	225	64	2	118	337	227	451	8.08e-105	317
MS.gene94747.t1	MTR_1g041315	65.254	118	40	1	1	118	20	136	2.55e-47	168

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene94747.t1	AT3G09110	48.598	107	54	1	1	107	15	120	6.23e-26	107
MS.gene94747.t1	AT3G09140	45.133	113	59	2	1	111	15	126	4.71e-23	100
MS.gene94747.t1	AT3G09140	29.520	271	143	7	118	349	228	489	1.23e-20	93.6
MS.gene94747.t1	AT3G09140	45.133	113	59	2	1	111	15	126	4.87e-23	100
MS.gene94747.t1	AT3G09140	29.520	271	143	7	118	349	256	517	1.44e-20	93.6
MS.gene94747.t1	AT5G01140	29.434	265	146	7	118	350	193	448	1.72e-22	99.0
MS.gene94747.t1	AT5G01120	44.762	105	57	1	1	105	15	118	4.01e-22	98.2
MS.gene94747.t1	AT5G01120	27.758	281	142	7	118	349	217	485	6.52e-20	91.7
MS.gene94747.t1	AT5G43240	42.105	114	61	2	1	110	15	127	9.94e-22	97.1
MS.gene94747.t1	AT5G43240	30.292	274	145	9	118	349	220	489	1.31e-18	87.8

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Find 80 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACTCCCATAGATTTCTT+GGG	0.461452	7.1:-35502039	None:intergenic
AAAGATAAAGTCAGTCAAAG+GGG	0.655613	7.1:-35501987	None:intergenic
AAAGGGTCATCAGGATTGGT+CGG	0.579181	7.1:+35502560	MS.gene94747:CDS
AAAGTTGTTTATGTAGAGGC+TGG	0.400881	7.1:+35501283	MS.gene94747:CDS
AAGTTGTTTATGTAGAGGCT+GGG	0.518284	7.1:+35501284	MS.gene94747:CDS
AATATGGAAGCAGTAAAATT+TGG	0.347826	7.1:+35501385	MS.gene94747:CDS
ACAACTTCTGCTTTGACAAA+CGG	0.425867	7.1:+35502717	MS.gene94747:CDS
ACAGAAGAAGTTTGACTTCA+AGG	0.383899	7.1:-35501554	None:intergenic
ACGTGGAAGAAAGGGTCATC+AGG	0.490313	7.1:+35502551	MS.gene94747:CDS
ACTCAAGCCAAGAAACTCGG+GGG	0.752288	7.1:+35501486	MS.gene94747:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAACTCCCATAGATTTCTT+GGG	-	chr7.1:35502042-35502061	None:intergenic	30.0%
AAAGATAAAGTCAGTCAAAG+GGG	-	chr7.1:35501990-35502009	None:intergenic	30.0%
AGTTATGTAACGGTAATATC+TGG	-	chr7.1:35502363-35502382	None:intergenic	30.0%
ATTTAGACCCAAGAAATCTA+TGG	+	chr7.1:35502032-35502051	MS.gene94747:CDS	30.0%
CATCAAATCTTGGTATGAAT+AGG	+	chr7.1:35501928-35501947	MS.gene94747:intron	30.0%
CGCAATTCATGAATGAAAAA+AGG	+	chr7.1:35502760-35502779	MS.gene94747:CDS	30.0%
CTCTTTCTTGCTGATATTAA+CGG	-	chr7.1:35501827-35501846	None:intergenic	30.0%
GAAGAAAGTTGTTTATGTAG+AGG	+	chr7.1:35501279-35501298	MS.gene94747:CDS	30.0%
TAATCTCTGTCATCAAATCT+TGG	+	chr7.1:35501918-35501937	MS.gene94747:intron	30.0%
TAGTAAATCCTCCTGAAATA+GGG	-	chr7.1:35502429-35502448	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.1	gene	35501262	35502824	35501262	ID=MS.gene94747
chr7.1	mRNA	35501262	35502824	35501262	ID=MS.gene94747.t1;Parent=MS.gene94747
chr7.1	exon	35501262	35501612	35501262	ID=MS.gene94747.t1.exon1;Parent=MS.gene94747.t1
chr7.1	CDS	35501262	35501612	35501262	ID=cds.MS.gene94747.t1;Parent=MS.gene94747.t1
chr7.1	exon	35501950	35502588	35501950	ID=MS.gene94747.t1.exon2;Parent=MS.gene94747.t1
chr7.1	CDS	35501950	35502588	35501950	ID=cds.MS.gene94747.t1;Parent=MS.gene94747.t1
chr7.1	exon	35502687	35502824	35502687	ID=MS.gene94747.t1.exon3;Parent=MS.gene94747.t1
chr7.1	CDS	35502687	35502824	35502687	ID=cds.MS.gene94747.t1;Parent=MS.gene94747.t1

Gene Sequence

>MS.gene94747

ATGGTGGACAAAGAAAGGAAGAAAGTTGTTTATGTAGAGGCTGGGAAGGATTTTGTTGATGTTCTCTTCAGCTTCTTAACATTGCCTTTAGGTACTATTGCACGACTCGTGGCTAAGGAGTCAAATATGGAAGCAGTAAAATTTGGCAGCATTAGCTCACTCTATCAAAGTGTTTCAGATCTTGACCAACAATATATATGGTCACAGACATGCAAAGAAATGCTACTCAAGCCAAGAAACTCGGGGGCTTATTATATCCAAAATATGAAACTGAACATTGATGACACCGAACCCTTGAAGTCAAACTTCTTCTGTGAGAACCAGAATTGCAAAGTTGAAAATAAGTGCTGTGTGAGTTTCTACAGAAATCAAACATGTATTTGTCGAAAGCCATTGAACCGAGAAGTTCCCCTAAATTTGAGTATACAAACTGGCTTTGTTAAGGAAAATTTGACTTTTATTGTTTCTGACGATCTTAATGTGATGCCGAATGTTGATGGAACAAGTTTATATCTCGTTCAGAAGTATGGAATCAAAGACATTGATGCTATTGATATACAAACCGTTAATATCAGCAAGAAAGAGGCATGTTTTCTATGTTTATATGTCATCTTTTCTGTTTATAGTAACTATATTGTTTTCTGTCATTAATTCTCTAATCTCTGTCATCAAATCTTGGTATGAATAGGTAGTAGATATTCTCAAGTTGATTTTGATATCAAAGACCCCTTTGACTGACTTTATCTTTAAAAGGGAGCAATCTGTTGTTAATTTAGACCCAAGAAATCTATGGGAGTTTTGGATTGGAGATGTAGACAATCCTTCTGATGAAATGGTTGTGAAAGTATTAAGAAGAAAATCAACTGCACAGATTTTGTTTGTTGAAGCAAAGGAAGATTTTGCTGACTTTGTCTTTAGTTTTCTCACCATTCCCTTGGGGGCAGTGTTACATGTGCTTCAAGGGTTCTCTTTTTTAAGCTGCATTGATAATTTATATAAGTACATGACTTGGTTGAGTCCGGATAGATGTTTATTGTCAGAAGAAGTCAAAGATAAACTAACCAGACCTCCTCTTTCCCGGCAGTATGGAATTAGGAACCAGATATTACCGTTACATAACTACCTTGGTAATCCTATCTATTATAAATATGTTGATCCTAAATCCCCTATTTCAGGAGGATTTACTAGAGGTCCAGTAACATTCATGGTGGCAGACGACTTGGTTGTGACACCAATGTCTTCTATTTCCATTATTTCATATTTAGAAAGAATGAAGGTCCCCCTTAATGACGTGGAAGAAAGGGTCATCAGGATTGGTCGGAAGGAGGTAAGGCACTGTGTTAAACTTCACTTTGGAGTTTGGAAACAGTTACTATTACTTGTATACGATTCCCTAAAACAATATTTGTTTGCATGATGATGCAGGGTCTCAGCATATTAAAAGCTTCATTGACGACAACTTCTGCTTTGACAAACGGCCTCAACCTTTGCATTATGGCGCAATTCATGAATGAAAAAAGGTCTCAGTCTAGCCACAAAAGAGCAAAGCTTGAAAGAACATAA

Protein sequence

>MS.gene94747.t1

MVDKERKKVVYVEAGKDFVDVLFSFLTLPLGTIARLVAKESNMEAVKFGSISSLYQSVSDLDQQYIWSQTCKEMLLKPRNSGAYYIQNMKLNIDDTEPLKSNFFCENQNCKVENKCCVVDILKLILISKTPLTDFIFKREQSVVNLDPRNLWEFWIGDVDNPSDEMVVKVLRRKSTAQILFVEAKEDFADFVFSFLTIPLGAVLHVLQGFSFLSCIDNLYKYMTWLSPDRCLLSEEVKDKLTRPPLSRQYGIRNQILPLHNYLGNPIYYKYVDPKSPISGGFTRGPVTFMVADDLVVTPMSSISIISYLERMKVPLNDVEERVIRIGRKEGLSILKASLTTTSALTNGLNLCIMAQFMNEKRSQSSHKRAKLERT