AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene007488

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007488.t1 MTR_7g100420 75.232 323 33 3 172 449 84 404 1.43e-162 464
MS.gene007488.t1 MTR_7g100420 88.000 75 9 0 1 75 8 82 1.61e-35 136
MS.gene007488.t1 MTR_7g063900 39.545 483 218 11 24 438 2 478 1.09e-95 296
MS.gene007488.t1 MTR_7g063840 38.627 466 223 7 28 438 6 463 4.46e-93 289
MS.gene007488.t1 MTR_7g063820 39.615 467 218 11 33 438 11 474 8.78e-91 284
MS.gene007488.t1 MTR_7g063660 38.710 465 219 9 33 438 10 467 2.23e-90 283
MS.gene007488.t1 MTR_7g063880 40.000 465 222 11 23 438 2 458 6.50e-86 271
MS.gene007488.t1 MTR_7g062280 37.708 480 222 9 30 438 8 481 1.77e-85 270
MS.gene007488.t1 MTR_7g062300 38.819 474 211 13 30 438 10 469 3.86e-83 264
MS.gene007488.t1 MTR_7g063890 38.000 500 233 12 8 438 3 494 2.77e-82 262
MS.gene007488.t1 MTR_7g063830 36.247 469 199 10 29 438 7 434 3.02e-76 245
MS.gene007488.t1 MTR_3g007740 35.849 477 203 12 25 438 2 438 1.27e-71 233
MS.gene007488.t1 MTR_7g066570 35.622 466 236 12 33 438 15 476 1.29e-69 231
MS.gene007488.t1 MTR_7g063920 35.443 474 199 11 23 438 2 426 6.12e-69 226
MS.gene007488.t1 MTR_7g066260 33.612 479 217 13 33 442 16 462 6.08e-62 209
MS.gene007488.t1 MTR_7g063670 33.755 474 210 14 30 438 13 447 4.70e-61 206
MS.gene007488.t1 MTR_1g014060 33.255 424 224 14 41 448 9 389 8.72e-58 195
MS.gene007488.t1 MTR_7g066430 30.515 485 258 11 33 442 5 485 1.91e-57 197
MS.gene007488.t1 MTR_7g012680 34.513 452 233 14 33 442 15 445 1.39e-56 194
MS.gene007488.t1 MTR_3g065200 36.385 426 229 15 31 431 2 410 3.57e-56 193
MS.gene007488.t1 MTR_7g066340 33.264 481 210 15 33 442 13 453 7.60e-55 189
MS.gene007488.t1 MTR_7g058710 31.185 481 244 14 33 442 13 477 1.71e-54 189
MS.gene007488.t1 MTR_7g066350 32.347 473 216 13 33 438 10 445 9.90e-54 186
MS.gene007488.t1 MTR_7g066580 30.989 455 242 15 38 438 1 437 2.67e-53 185
MS.gene007488.t1 MTR_7g066310 32.483 431 215 11 33 442 8 383 3.16e-53 184
MS.gene007488.t1 MTR_1g041315 29.707 478 211 15 33 426 15 451 3.19e-46 167
MS.gene007488.t1 MTR_7g066410 29.825 513 256 15 24 438 2 508 4.77e-46 167
MS.gene007488.t1 MTR_2g029400 28.989 445 213 11 33 430 15 403 2.72e-43 157
MS.gene007488.t1 MTR_7g066290 29.918 488 211 14 27 442 5 433 3.47e-43 157
MS.gene007488.t1 MTR_7g066400 28.211 475 218 13 33 438 13 433 2.44e-41 152
MS.gene007488.t1 MTR_7g066480 30.679 427 249 13 33 438 17 417 2.20e-40 150
MS.gene007488.t1 MTR_4g019310 28.279 488 266 15 30 439 6 487 1.00e-39 149
MS.gene007488.t1 MTR_7g066360 30.645 496 219 16 23 442 3 449 5.83e-39 147
MS.gene007488.t1 MTR_7g058700 27.533 454 203 11 44 438 531 917 2.42e-38 148
MS.gene007488.t1 MTR_7g066490 31.100 418 245 12 33 438 17 403 7.64e-37 140
MS.gene007488.t1 MTR_4g017830 28.400 500 251 20 32 438 12 497 1.27e-36 141
MS.gene007488.t1 MTR_7g063720 40.306 196 88 6 249 438 50 222 1.31e-34 129
MS.gene007488.t1 MTR_7g062270 38.919 185 104 3 30 209 8 188 1.51e-33 130
MS.gene007488.t1 MTR_4g017440 27.833 503 259 20 32 443 14 503 5.77e-32 127
MS.gene007488.t1 MTR_4g017410 27.953 508 229 19 32 438 9 480 1.22e-31 127
MS.gene007488.t1 MTR_4g019340 27.178 482 254 13 30 430 36 501 2.04e-30 123
MS.gene007488.t1 MTR_4g017470 27.071 495 233 15 32 438 12 466 1.36e-26 112
MS.gene007488.t1 MTR_7g063850 37.688 199 107 7 252 442 93 282 5.26e-26 107
MS.gene007488.t1 MTR_4g017610 26.465 495 244 17 32 438 13 475 9.58e-26 109
MS.gene007488.t1 MTR_7g063690 33.755 237 84 7 24 250 4 177 3.18e-23 98.6
MS.gene007488.t1 MTR_7g066680 31.556 225 112 5 251 438 115 334 2.39e-21 95.1
MS.gene007488.t1 MTR_7g066280 26.866 402 212 16 111 442 1 390 2.46e-19 90.1
MS.gene007488.t1 MTR_8g023240 23.676 321 168 6 29 288 34 338 3.02e-18 87.8
MS.gene007488.t1 MTR_1g115440 30.244 205 117 5 249 436 38 233 9.21e-15 73.9
MS.gene007488.t1 MTR_1g115440 28.755 233 126 8 33 237 12 232 3.67e-14 72.4
MS.gene007488.t1 MTR_7g063870 52.174 69 28 1 29 92 28 96 1.80e-14 73.6
MS.gene007488.t1 MTR_2g067310 33.690 187 76 6 19 198 30 175 3.33e-13 69.7
MS.gene007488.t1 MTR_7g063760 47.619 63 32 1 377 438 1 63 2.89e-12 62.4
MS.gene007488.t1 MTR_7g066390 40.909 88 49 1 355 442 38 122 3.75e-12 64.7
MS.gene007488.t1 MTR_4g017550 29.956 227 128 8 227 438 259 469 4.42e-11 65.1
MS.gene007488.t1 MTR_4g019240 38.053 113 55 6 32 130 13 124 4.93e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene007488.t1 AT3G09140 27.711 498 258 16 33 442 10 493 1.53e-34 135
MS.gene007488.t1 AT3G09140 31.469 286 156 7 33 293 10 280 2.71e-26 111
MS.gene007488.t1 AT3G09110 35.945 217 126 6 35 239 12 227 2.05e-25 107
MS.gene007488.t1 AT5G43240 38.947 190 108 5 33 217 10 196 2.52e-25 108
MS.gene007488.t1 AT5G43240 38.947 190 108 5 33 217 10 196 2.52e-25 108
MS.gene007488.t1 AT5G43240 38.947 190 108 5 33 217 10 196 2.52e-25 108
MS.gene007488.t1 AT5G37320 26.407 462 274 14 39 438 18 475 5.82e-25 107
MS.gene007488.t1 AT5G01120 36.404 228 125 6 31 239 8 234 6.47e-25 107
MS.gene007488.t1 AT3G09120 29.710 276 160 6 27 274 1 270 4.31e-23 99.8
MS.gene007488.t1 AT5G01130 25.630 476 249 14 28 438 5 440 3.54e-22 99.0
MS.gene007488.t1 AT5G01150 33.645 214 116 6 28 225 5 208 1.75e-20 94.4
MS.gene007488.t1 AT5G01140 26.786 224 130 4 28 237 5 208 1.43e-13 72.8

Find 80 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGAACAAGGTCGTCACTTT+TGG 0.242321 7.4:-9593176 MS.gene007488:CDS
TTTCTTCAATTTCCGAAATC+TGG 0.259029 7.4:+9593471 None:intergenic
ATTCAAGATTCATGAGAAAA+AGG 0.270365 7.4:-9593369 MS.gene007488:CDS
CAGTGAGAGTGAGGGATGTT+TGG 0.272949 7.4:+9593837 None:intergenic
CAGCCTTCTCTCATTTCCTT+TGG 0.276123 7.4:-9593651 MS.gene007488:CDS
CCATGAGGATTTCCTTTAGA+TGG 0.293787 7.4:+9593314 None:intergenic
TTGTTCTTCACGTCATTTAG+AGG 0.302928 7.4:+9593191 None:intergenic
AGCCTTCTCTCATTTCCTTT+GGG 0.325164 7.4:-9593650 MS.gene007488:CDS
TAACTTAAGCAACCAGATTT+CGG 0.325470 7.4:-9593483 MS.gene007488:CDS
GAAATGTTGTGTAGGAAGTA+TGG 0.327822 7.4:-9593603 MS.gene007488:CDS
ATAGAGAGTGATTGTGATAT+TGG 0.327959 7.4:-9595271 MS.gene007488:CDS
CCTAGATGTTTCGCAGCAAC+TGG 0.334665 7.4:+9594980 None:intergenic
GCAGCAACTGGAAAATTCAT+AGG 0.359346 7.4:+9594992 None:intergenic
TTCAGACAACCAAGTTGAAT+TGG 0.378814 7.4:+9595247 None:intergenic
AGGATTTCCTTTAGATGGTA+TGG 0.380008 7.4:+9593319 None:intergenic
ATGGTTGATACTTTCTTTGA+AGG 0.392113 7.4:+9593415 None:intergenic
AGAACTTCTAAAGCATGCTT+TGG 0.393652 7.4:-9593864 MS.gene007488:CDS
CCAGTTGCTGCGAAACATCT+AGG 0.393748 7.4:-9594980 MS.gene007488:CDS
AGTGAGAGTGAGGGATGTTT+GGG 0.394876 7.4:+9593838 None:intergenic
TGAACAAAGAAAGTACTTGT+AGG 0.398232 7.4:+9595087 None:intergenic
AGCTTCTTAACCCTACCTTT+AGG 0.413452 7.4:-9595310 MS.gene007488:CDS
TCGTATTATTGTTATTATCA+AGG 0.413490 7.4:-9593443 MS.gene007488:CDS
AAAACTCGAAATCTGAAATT+GGG 0.428943 7.4:+9593231 None:intergenic
CATCCCTCACTCTCACTGAT+TGG 0.432736 7.4:-9593832 MS.gene007488:CDS
GGAAGAACTGTGACCTTTCG+AGG 0.435639 7.4:+9593789 None:intergenic
GCTGTTATTCATTTATTAGA+AGG 0.438794 7.4:-9593626 MS.gene007488:CDS
TCAGATTCTGCACTAACAAA+TGG 0.444568 7.4:-9593016 MS.gene007488:CDS
ATACAATAGCATACTTAAGT+TGG 0.454839 7.4:-9593573 MS.gene007488:CDS
TAGAGAGTGATTGTGATATT+GGG 0.456773 7.4:-9595270 MS.gene007488:CDS
AACGTGATATTTGCCGAGGC+TGG 0.459070 7.4:-9595358 MS.gene007488:CDS
AATCTTGCAATTGTTCCTAA+AGG 0.459202 7.4:+9595295 None:intergenic
GAACAAAGAAAGTACTTGTA+GGG 0.460658 7.4:+9595088 None:intergenic
TGACAAATATATGAAATCAA+TGG 0.462454 7.4:-9593549 MS.gene007488:CDS
CATATTACATATGAAGCAAC+TGG 0.474515 7.4:-9595484 MS.gene007488:CDS
AACTGTGACCTTTCGAGGGT+TGG 0.475661 7.4:+9593794 None:intergenic
AAATCTGAAATTGGGCAAGA+TGG 0.489999 7.4:+9593239 None:intergenic
TGATATTGTTACATCAGAGC+AGG 0.490911 7.4:-9595446 MS.gene007488:CDS
TGCAATTGTTCCTAAAGGTA+GGG 0.496652 7.4:+9595300 None:intergenic
CTCGGCAAATATCACGTTGT+TGG 0.499742 7.4:+9595363 None:intergenic
AATGATAATTCCATCAAAAG+AGG 0.502595 7.4:-9595161 MS.gene007488:CDS
TCCTAGACTATTTGTAACAT+AGG 0.508421 7.4:+9592974 None:intergenic
TATCATTTGTTTGATCGTGT+TGG 0.510185 7.4:+9595177 None:intergenic
CTGTTATTCATTTATTAGAA+GGG 0.512471 7.4:-9593625 MS.gene007488:CDS
GGATTTCCTTTAGATGGTAT+GGG 0.516698 7.4:+9593320 None:intergenic
TTGCAATTGTTCCTAAAGGT+AGG 0.521135 7.4:+9595299 None:intergenic
GATTATCCCATACCATCTAA+AGG 0.521815 7.4:-9593326 MS.gene007488:CDS
TATCAACGTCAATGCCGAAA+AGG 0.528179 7.4:-9594849 MS.gene007488:intron
CCTAGACTATTTGTAACATA+GGG 0.538888 7.4:+9592975 None:intergenic
ACTTGTAGGGCTCATTGTCA+TGG 0.557745 7.4:+9595101 None:intergenic
GAGGCTCATTAATCCACGCA+TGG 0.570739 7.4:-9593516 MS.gene007488:CDS
CAGTTATGTAAAATTCTCCA+TGG 0.571166 7.4:+9593396 None:intergenic
GATATTGGGCCAATTCAACT+TGG 0.571921 7.4:-9595256 MS.gene007488:CDS
GCAGTGTTTGAACATATTGA+AGG 0.574216 7.4:-9593050 MS.gene007488:intron
TTAGAAGGGAAATGTTGTGT+AGG 0.576543 7.4:-9593611 MS.gene007488:CDS
GTGTCAAAGCTCTCGACGTA+GGG 0.577548 7.4:-9595210 MS.gene007488:CDS
AAATCCAATCAGTGAGAGTG+AGG 0.580664 7.4:+9593828 None:intergenic
CCCTATGTTACAAATAGTCT+AGG 0.588908 7.4:-9592975 None:intergenic
TTAAATTGACAGCCCATGCG+TGG 0.596620 7.4:+9593503 None:intergenic
CTCCCAAAGGAAATGAGAGA+AGG 0.596734 7.4:+9593648 None:intergenic
CCATCTAAAGGAAATCCTCA+TGG 0.596826 7.4:-9593314 MS.gene007488:CDS
GAAGAACTGTGACCTTTCGA+GGG 0.603576 7.4:+9593790 None:intergenic
AAATCCTCATGGTTATGTGA+AGG 0.607162 7.4:-9593303 MS.gene007488:CDS
GAATCAAACCAACCCTCGAA+AGG 0.608797 7.4:-9593802 MS.gene007488:intron
AGTGTCAAAGCTCTCGACGT+AGG 0.615122 7.4:-9595211 MS.gene007488:CDS
AGGCTCATTAATCCACGCAT+GGG 0.618206 7.4:-9593515 MS.gene007488:CDS
CAAGTAAGTTAAATATTCTG+TGG 0.623008 7.4:+9594892 None:intergenic
GGCAAAGAATCTGTTCGAGA+GGG 0.624084 7.4:-9594959 MS.gene007488:CDS
TTCAAAGAAAGTATCAACCA+TGG 0.626213 7.4:-9593413 MS.gene007488:CDS
TCTAAATGACGTGAAGAACA+AGG 0.627877 7.4:-9593189 MS.gene007488:CDS
GTTAAATATTCTGTGGTGAG+CGG 0.628276 7.4:+9594899 None:intergenic
AATCCAATCAGTGAGAGTGA+GGG 0.637163 7.4:+9593829 None:intergenic
AGGCAAAGAATCTGTTCGAG+AGG 0.637207 7.4:-9594960 MS.gene007488:CDS
GATATTGTTACATCAGAGCA+GGG 0.639597 7.4:-9595445 MS.gene007488:CDS
TACATATGAAGCAACTGGTG+AGG 0.649955 7.4:-9595479 MS.gene007488:CDS
TGTTGCAACTGAAGCAACAG+TGG 0.656311 7.4:-9595413 MS.gene007488:CDS
TGCAGAATCTGAAGTCAAAG+CGG 0.665909 7.4:+9593027 None:intergenic
AAATGAATAACAGCTCCCAA+AGG 0.669800 7.4:+9593635 None:intergenic
TGGTCCTTCACATAACCATG+AGG 0.673976 7.4:+9593299 None:intergenic
CAACAACGTGATATTTGCCG+AGG 0.676366 7.4:-9595362 MS.gene007488:CDS
ATTGTTACATCAGAGCAGGG+TGG 0.758798 7.4:-9595442 MS.gene007488:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTACAAAATATTCTTGTT+TGG + chr7.4:9594091-9594110 None:intergenic 15.0%
!! ATAATATATTATCAGAACGT+CGG - chr7.4:9594115-9594134 MS.gene007488:intron 20.0%
!! CTGTTATTCATTTATTAGAA+GGG - chr7.4:9594841-9594860 MS.gene007488:intron 20.0%
!! GAAATTAATCATGTTATAGT+TGG - chr7.4:9594147-9594166 MS.gene007488:intron 20.0%
!! TGACAAATATATGAAATCAA+TGG - chr7.4:9594917-9594936 MS.gene007488:CDS 20.0%
!! TGATGAGGAAATTAAAAAAA+TGG + chr7.4:9594547-9594566 None:intergenic 20.0%
!! TTCAATTGAATAACCAAATA+AGG - chr7.4:9593704-9593723 MS.gene007488:intron 20.0%
!! TTTCTATATGGAATTATATG+AGG + chr7.4:9594257-9594276 None:intergenic 20.0%
!!! TATTGTTTTTAACATCACAA+GGG + chr7.4:9594701-9594720 None:intergenic 20.0%
!!! TCGTATTATTGTTATTATCA+AGG - chr7.4:9595023-9595042 MS.gene007488:CDS 20.0%
! AAATCTATAATTCCTACTAC+AGG + chr7.4:9594065-9594084 None:intergenic 25.0%
! AATGATAATTCCATCAAAAG+AGG - chr7.4:9593305-9593324 MS.gene007488:CDS 25.0%
! AGTGAAAATATAGTGATGAA+AGG + chr7.4:9593876-9593895 None:intergenic 25.0%
! ATACAATAGCATACTTAAGT+TGG - chr7.4:9594893-9594912 MS.gene007488:CDS 25.0%
! ATTCAAGATTCATGAGAAAA+AGG - chr7.4:9595097-9595116 MS.gene007488:CDS 25.0%
! CAAGTAAGTTAAATATTCTG+TGG + chr7.4:9593577-9593596 None:intergenic 25.0%
! GCTGTTATTCATTTATTAGA+AGG - chr7.4:9594840-9594859 MS.gene007488:intron 25.0%
! GTGAAAATATAGTGATGAAA+GGG + chr7.4:9593875-9593894 None:intergenic 25.0%
! TAATATATTATCAGAACGTC+GGG - chr7.4:9594116-9594135 MS.gene007488:intron 25.0%
! TAATCATGTTATAGTTGGAA+GGG - chr7.4:9594152-9594171 MS.gene007488:intron 25.0%
! TAGAAAACCATCATCATATA+CGG - chr7.4:9593728-9593747 MS.gene007488:intron 25.0%
! TCCAATTTAAATTAGACAAG+AGG + chr7.4:9594231-9594250 None:intergenic 25.0%
! TCCTCTTGTCTAATTTAAAT+TGG - chr7.4:9594227-9594246 MS.gene007488:intron 25.0%
! TTAAAAAAATGGTGTCTGTA+TGG + chr7.4:9594536-9594555 None:intergenic 25.0%
! TTAATCATGTTATAGTTGGA+AGG - chr7.4:9594151-9594170 MS.gene007488:intron 25.0%
!! AAAAACTCGAAATCTGAAAT+TGG + chr7.4:9595239-9595258 None:intergenic 25.0%
!! AAAACTCGAAATCTGAAATT+GGG + chr7.4:9595238-9595257 None:intergenic 25.0%
!! AATCAATGGATTCAAAAAAG+AGG - chr7.4:9594931-9594950 MS.gene007488:CDS 25.0%
!! ATGCATATCCTTATAGATTT+TGG + chr7.4:9594016-9594035 None:intergenic 25.0%
!! CTATAAATACGAAACCTTTT+CGG + chr7.4:9593634-9593653 None:intergenic 25.0%
!! CTGTAACCAAAAAGATTTTA+TGG + chr7.4:9595190-9595209 None:intergenic 25.0%
!! GCATCATTATCTATTTCTTA+TGG - chr7.4:9595383-9595402 MS.gene007488:CDS 25.0%
!!! ATATCCTTATAGATTTTGGT+GGG + chr7.4:9594012-9594031 None:intergenic 25.0%
!!! ATCAATATGAATTGATGATG+AGG + chr7.4:9594562-9594581 None:intergenic 25.0%
!!! CTATTGTTTTTAACATCACA+AGG + chr7.4:9594702-9594721 None:intergenic 25.0%
!!! TCTATTTCTTATGGTTTTGT+TGG - chr7.4:9595392-9595411 MS.gene007488:CDS 25.0%
!!! TTTTTTTTTGTGTCCAAGTA+AGG + chr7.4:9593903-9593922 None:intergenic 25.0%
AATATATTATCAGAACGTCG+GGG - chr7.4:9594117-9594136 MS.gene007488:intron 30.0%
AATCTTGCAATTGTTCCTAA+AGG + chr7.4:9593174-9593193 None:intergenic 30.0%
AGAAAACCATCATCATATAC+GGG - chr7.4:9593729-9593748 MS.gene007488:intron 30.0%
AGTAACTTAATGTAGAACTC+AGG - chr7.4:9593933-9593952 MS.gene007488:intron 30.0%
ATAGAGAGTGATTGTGATAT+TGG - chr7.4:9593195-9593214 MS.gene007488:CDS 30.0%
CAGTTATGTAAAATTCTCCA+TGG + chr7.4:9595073-9595092 None:intergenic 30.0%
CATATTACATATGAAGCAAC+TGG - chr7.4:9592982-9593001 MS.gene007488:CDS 30.0%
GTAACTTAATGTAGAACTCA+GGG - chr7.4:9593934-9593953 MS.gene007488:intron 30.0%
TAACTTAAGCAACCAGATTT+CGG - chr7.4:9594983-9595002 MS.gene007488:CDS 30.0%
TAGAGAGTGATTGTGATATT+GGG - chr7.4:9593196-9593215 MS.gene007488:CDS 30.0%
TATCATTTGTTTGATCGTGT+TGG + chr7.4:9593292-9593311 None:intergenic 30.0%
TGGAAATACACAAATGATCT+TGG - chr7.4:9594196-9594215 MS.gene007488:intron 30.0%
TTTCTTCAATTTCCGAAATC+TGG + chr7.4:9594998-9595017 None:intergenic 30.0%
! AGCAACAACAGTTTTCTATA+TGG + chr7.4:9594269-9594288 None:intergenic 30.0%
! ATGGTTGATACTTTCTTTGA+AGG + chr7.4:9595054-9595073 None:intergenic 30.0%
! ATTTTCACTATGTCCTTACT+TGG - chr7.4:9593887-9593906 MS.gene007488:intron 30.0%
! CATATCCTTATAGATTTTGG+TGG + chr7.4:9594013-9594032 None:intergenic 30.0%
! GAAGGACCATAAAATCTTTT+TGG - chr7.4:9595181-9595200 MS.gene007488:CDS 30.0%
! GATGGTTTTCTAACCTTATT+TGG + chr7.4:9593720-9593739 None:intergenic 30.0%
! TATTGATTAGTGTGTTGTAC+AGG - chr7.4:9594575-9594594 MS.gene007488:intron 30.0%
! TTTTATCATTACTGCTGATC+TGG - chr7.4:9593536-9593555 MS.gene007488:CDS 30.0%
!! GAACAAAGAAAGTACTTGTA+GGG + chr7.4:9593381-9593400 None:intergenic 30.0%
!! TGAACAAAGAAAGTACTTGT+AGG + chr7.4:9593382-9593401 None:intergenic 30.0%
!! TTCAAAGAAAGTATCAACCA+TGG - chr7.4:9595053-9595072 MS.gene007488:CDS 30.0%
!!! GATCTTAGTTTTGAGTTCAA+AGG - chr7.4:9593967-9593986 MS.gene007488:intron 30.0%
AAATCCTCATGGTTATGTGA+AGG - chr7.4:9595163-9595182 MS.gene007488:CDS 35.0%
AAATGAATAACAGCTCCCAA+AGG + chr7.4:9594834-9594853 None:intergenic 35.0%
ACTATACCCGTATATGATGA+TGG + chr7.4:9593738-9593757 None:intergenic 35.0%
AGAACCCACCAAAATCTATA+AGG - chr7.4:9594005-9594024 MS.gene007488:intron 35.0%
AGGATTTCCTTTAGATGGTA+TGG + chr7.4:9595150-9595169 None:intergenic 35.0%
ATATATTATCAGAACGTCGG+GGG - chr7.4:9594118-9594137 MS.gene007488:intron 35.0%
CTATTCTATTAGTAAGTCCG+TGG - chr7.4:9594500-9594519 MS.gene007488:intron 35.0%
GAAATGTTGTGTAGGAAGTA+TGG - chr7.4:9594863-9594882 MS.gene007488:CDS 35.0%
GATATTGTTACATCAGAGCA+GGG - chr7.4:9593021-9593040 MS.gene007488:CDS 35.0%
GATTATCCCATACCATCTAA+AGG - chr7.4:9595140-9595159 MS.gene007488:CDS 35.0%
GCAAACACAAAACAATGCAT+TGG + chr7.4:9595349-9595368 None:intergenic 35.0%
GCAGTGTTTGAACATATTGA+AGG - chr7.4:9595416-9595435 MS.gene007488:CDS 35.0%
GGATTTCCTTTAGATGGTAT+GGG + chr7.4:9595149-9595168 None:intergenic 35.0%
GTTAAATATTCTGTGGTGAG+CGG + chr7.4:9593570-9593589 None:intergenic 35.0%
TCAGATTCTGCACTAACAAA+TGG - chr7.4:9595450-9595469 MS.gene007488:CDS 35.0%
TCTAAATGACGTGAAGAACA+AGG - chr7.4:9595277-9595296 MS.gene007488:CDS 35.0%
TGATATTGTTACATCAGAGC+AGG - chr7.4:9593020-9593039 MS.gene007488:CDS 35.0%
TGCAATTGTTCCTAAAGGTA+GGG + chr7.4:9593169-9593188 None:intergenic 35.0%
TGTATGGTTAACACTTACCA+CGG + chr7.4:9594520-9594539 None:intergenic 35.0%
TGTGATCTCCTAATTCTTCA+CGG + chr7.4:9594406-9594425 None:intergenic 35.0%
TTAGAAGGGAAATGTTGTGT+AGG - chr7.4:9594855-9594874 MS.gene007488:CDS 35.0%
TTATGATTTGATGTTGCTGC+TGG - chr7.4:9594380-9594399 MS.gene007488:intron 35.0%
TTCAAAGGAAGATCTATAGC+TGG - chr7.4:9593982-9594001 MS.gene007488:intron 35.0%
TTGCAATTGTTCCTAAAGGT+AGG + chr7.4:9593170-9593189 None:intergenic 35.0%
TTGTTCTTCACGTCATTTAG+AGG + chr7.4:9595278-9595297 None:intergenic 35.0%
! AAACAATGCATTGGTGAAAG+AGG + chr7.4:9595340-9595359 None:intergenic 35.0%
! AAATCTGAAATTGGGCAAGA+TGG + chr7.4:9595230-9595249 None:intergenic 35.0%
! AACAAAATCTTTTCCAGCCT+CGG + chr7.4:9593124-9593143 None:intergenic 35.0%
! TTCAGACAACCAAGTTGAAT+TGG + chr7.4:9593222-9593241 None:intergenic 35.0%
!! ACTCTCACTGATTGGATTTT+AGG - chr7.4:9594642-9594661 MS.gene007488:intron 35.0%
!! AGAACTTCTAAAGCATGCTT+TGG - chr7.4:9594602-9594621 MS.gene007488:intron 35.0%
!! CATTATGAAGGTGGGTTAAT+TGG - chr7.4:9594176-9594195 MS.gene007488:intron 35.0%
!!! CTTTTTGGTTACAGATGAGT+TGG - chr7.4:9595196-9595215 MS.gene007488:CDS 35.0%
!!! CTTTTTTCTTTGCCTGTAGT+AGG - chr7.4:9594050-9594069 MS.gene007488:intron 35.0%
AAATCCAATCAGTGAGAGTG+AGG + chr7.4:9594641-9594660 None:intergenic 40.0%
AATCCAATCAGTGAGAGTGA+GGG + chr7.4:9594640-9594659 None:intergenic 40.0%
AGCCTTCTCTCATTTCCTTT+GGG - chr7.4:9594816-9594835 MS.gene007488:intron 40.0%
AGCTTCTTAACCCTACCTTT+AGG - chr7.4:9593156-9593175 MS.gene007488:intron 40.0%
AGTTGGAAGGGTCATTATGA+AGG - chr7.4:9594164-9594183 MS.gene007488:intron 40.0%
CCATCTAAAGGAAATCCTCA+TGG - chr7.4:9595152-9595171 MS.gene007488:CDS 40.0%
CCATGAGGATTTCCTTTAGA+TGG + chr7.4:9595155-9595174 None:intergenic 40.0%
GATATTGGGCCAATTCAACT+TGG - chr7.4:9593210-9593229 MS.gene007488:CDS 40.0%
GCAGCAACTGGAAAATTCAT+AGG + chr7.4:9593477-9593496 None:intergenic 40.0%
TACATATGAAGCAACTGGTG+AGG - chr7.4:9592987-9593006 MS.gene007488:CDS 40.0%
TATCAACGTCAATGCCGAAA+AGG - chr7.4:9593617-9593636 MS.gene007488:CDS 40.0%
TGAATCTCTGGTAGCAATTG+AGG + chr7.4:9593771-9593790 None:intergenic 40.0%
! TGCAGAATCTGAAGTCAAAG+CGG + chr7.4:9595442-9595461 None:intergenic 40.0%
!! AAGAACAAGGTCGTCACTTT+TGG - chr7.4:9595290-9595309 MS.gene007488:CDS 40.0%
!!! AGAACAAGGTCGTCACTTTT+GGG - chr7.4:9595291-9595310 MS.gene007488:CDS 40.0%
ACTTGTAGGGCTCATTGTCA+TGG + chr7.4:9593368-9593387 None:intergenic 45.0%
AGGCAAAGAATCTGTTCGAG+AGG - chr7.4:9593506-9593525 MS.gene007488:CDS 45.0%
AGGCTCATTAATCCACGCAT+GGG - chr7.4:9594951-9594970 MS.gene007488:CDS 45.0%
AGTGAGAGTGAGGGATGTTT+GGG + chr7.4:9594631-9594650 None:intergenic 45.0%
ATTGTTACATCAGAGCAGGG+TGG - chr7.4:9593024-9593043 MS.gene007488:CDS 45.0%
CAACAACGTGATATTTGCCG+AGG - chr7.4:9593104-9593123 MS.gene007488:intron 45.0%
CAGCCTTCTCTCATTTCCTT+TGG - chr7.4:9594815-9594834 MS.gene007488:intron 45.0%
CTCCCAAAGGAAATGAGAGA+AGG + chr7.4:9594821-9594840 None:intergenic 45.0%
CTCGGCAAATATCACGTTGT+TGG + chr7.4:9593106-9593125 None:intergenic 45.0%
GAAGAACTGTGACCTTTCGA+GGG + chr7.4:9594679-9594698 None:intergenic 45.0%
GAATCAAACCAACCCTCGAA+AGG - chr7.4:9594664-9594683 MS.gene007488:intron 45.0%
GGAAGGGTCATTATGAAGGT+GGG - chr7.4:9594168-9594187 MS.gene007488:intron 45.0%
GGCAAAGAATCTGTTCGAGA+GGG - chr7.4:9593507-9593526 MS.gene007488:CDS 45.0%
TGGAAGGGTCATTATGAAGG+TGG - chr7.4:9594167-9594186 MS.gene007488:intron 45.0%
TGGTCCTTCACATAACCATG+AGG + chr7.4:9595170-9595189 None:intergenic 45.0%
TGTTGCAACTGAAGCAACAG+TGG - chr7.4:9593053-9593072 MS.gene007488:intron 45.0%
TTAAATTGACAGCCCATGCG+TGG + chr7.4:9594966-9594985 None:intergenic 45.0%
! CTTCGAGTCTCCTCTTTTGA+TGG + chr7.4:9593318-9593337 None:intergenic 45.0%
!!! CGTCACTTTTGGGCTAAAAG+AGG - chr7.4:9595301-9595320 MS.gene007488:CDS 45.0%
AACGTGATATTTGCCGAGGC+TGG - chr7.4:9593108-9593127 MS.gene007488:intron 50.0%
AACTGTGACCTTTCGAGGGT+TGG + chr7.4:9594675-9594694 None:intergenic 50.0%
AGTGTCAAAGCTCTCGACGT+AGG - chr7.4:9593255-9593274 MS.gene007488:CDS 50.0%
CAGTGAGAGTGAGGGATGTT+TGG + chr7.4:9594632-9594651 None:intergenic 50.0%
CATCCCTCACTCTCACTGAT+TGG - chr7.4:9594634-9594653 MS.gene007488:intron 50.0%
CCAGTTGCTGCGAAACATCT+AGG - chr7.4:9593486-9593505 MS.gene007488:CDS 50.0%
CCTAGATGTTTCGCAGCAAC+TGG + chr7.4:9593489-9593508 None:intergenic 50.0%
GAGGCTCATTAATCCACGCA+TGG - chr7.4:9594950-9594969 MS.gene007488:CDS 50.0%
GGAAGAACTGTGACCTTTCG+AGG + chr7.4:9594680-9594699 None:intergenic 50.0%
GTGTCAAAGCTCTCGACGTA+GGG - chr7.4:9593256-9593275 MS.gene007488:CDS 50.0%
TGCTGCTATTCGCTGACAGT+TGG - chr7.4:9594311-9594330 MS.gene007488:intron 50.0%
!! CTGACAGTTGGTGCTGTTGT+TGG - chr7.4:9594323-9594342 MS.gene007488:intron 50.0%
CTATAGCCTGCCTGAGTCCA+CGG + chr7.4:9593796-9593815 None:intergenic 55.0%
GAGATTCACTCCGTGGACTC+AGG - chr7.4:9593783-9593802 MS.gene007488:intron 55.0%
GAGTCCACGGAGTGAATCTC+TGG + chr7.4:9593783-9593802 None:intergenic 55.0%
GCTACCAGAGATTCACTCCG+TGG - chr7.4:9593776-9593795 MS.gene007488:intron 55.0%
GCTGCTGGCCGTGAAGAATT+AGG - chr7.4:9594395-9594414 MS.gene007488:intron 55.0%
GGACTCAGGCAGGCTATAGT+GGG - chr7.4:9593797-9593816 MS.gene007488:intron 55.0%
TGGACTCAGGCAGGCTATAG+TGG - chr7.4:9593796-9593815 MS.gene007488:intron 55.0%
TTCACTCCGTGGACTCAGGC+AGG - chr7.4:9593787-9593806 MS.gene007488:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 9592976 9595512 9592976 ID=MS.gene007488
chr7.4 mRNA 9592976 9595512 9592976 ID=MS.gene007488.t1;Parent=MS.gene007488
chr7.4 exon 9594850 9595512 9594850 ID=MS.gene007488.t1.exon1;Parent=MS.gene007488.t1
chr7.4 CDS 9594850 9595512 9594850 ID=cds.MS.gene007488.t1;Parent=MS.gene007488.t1
chr7.4 exon 9593803 9593891 9593803 ID=MS.gene007488.t1.exon2;Parent=MS.gene007488.t1
chr7.4 CDS 9593803 9593891 9593803 ID=cds.MS.gene007488.t1;Parent=MS.gene007488.t1
chr7.4 exon 9593166 9593670 9593166 ID=MS.gene007488.t1.exon3;Parent=MS.gene007488.t1
chr7.4 CDS 9593166 9593670 9593166 ID=cds.MS.gene007488.t1;Parent=MS.gene007488.t1
chr7.4 exon 9592976 9593068 9592976 ID=MS.gene007488.t1.exon4;Parent=MS.gene007488.t1
chr7.4 CDS 9592976 9593068 9592976 ID=cds.MS.gene007488.t1;Parent=MS.gene007488.t1
Gene Sequence

>MS.gene007488

ATGGGTCATATTACATATGAAGCAACTGGTGAGGACAATAACAATGATATTGTTACATCAGAGCAGGGTGGTGTTGTTGTTGCAACTGAAGCAACAGTGGAGTTGAAACTTCTTATCGACAAAGAGACCAACAACGTGATATTTGCCGAGGCTGGAAAAGATTTTGTTGACATTCTCTTTAGCTTCTTAACCCTACCTTTAGGAACAATTGCAAGATTGATAGAGAGTGATTGTGATATTGGGCCAATTCAACTTGGTTGTCTGAATACACTCTATGCAAGTGTCAAAGCTCTCGACGTAGGGTCTCTAACAACCAACACGATCAAACAAATGATAATTCCATCAAAAGAGGAGACTCGAAGTTATCATGACGATCTTAAGCTTTATATCCATGACAATGAGCCCTACAAGTACTTTCTTTGTTCAAAACTTGAAAAAGAATCATGCTCTTGTTTTTTGAGTGTTTCTGCAAATCATAGTTGCTACACATGTCGAAATCCTATGAATTTTCCAGTTGCTGCGAAACATCTAGGCAAAGAATCTGTTCGAGAGGGTAACACTTTTATCATTACTGCTGATCTGGCTGTTTATCCGCTCACCACAGAATATTTAACTTACTTGACTTCATTTGTGAGAGAGACTATCAACGTCAATGCCGAAAAGGTTTCGTATTTATAGTTTTATTTTGTAGATAGTTGCTTATTGTATGTGTTTGTTTAAAACTGTACTTCAATTGAATAACCAAATAAGGTTAGAAAACCATCATCATATACGGGTATAGTTTATTACTCACCTCAATTGCTACCAGAGATTCACTCCGTGGACTCAGGCAGGCTATAGTGGGACTACTCAACGTCATTATCATCGTTATAGAGTTGTTCTCTTGTAGTAATTCACCCTTTCATCACTATATTTTCACTATGTCCTTACTTGGACACAAAAAAAAATATATTTTTAAGTAACTTAATGTAGAACTCAGGGCATGTTGAAAGATCTTAGTTTTGAGTTCAAAGGAAGATCTATAGCTGGAGAACCCACCAAAATCTATAAGGATATGCATGTTTAAACTTATCACTTTTTTCTTTGCCTGTAGTAGGAATTATAGATTTATACCAAACAAGAATATTTTGTAAAAGATCATAATATATTATCAGAACGTCGGGGGAAACATGAAATTAATCATGTTATAGTTGGAAGGGTCATTATGAAGGTGGGTTAATTGGAAATACACAAATGATCTTGGTTGTGTTGTCCTCTTGTCTAATTTAAATTGGAGTTCCTCATATAATTCCATATAGAAAACTGTTGTTGCTATTAGCTATTTCAAAAATTTGTTGCTGCTATTCGCTGACAGTTGGTGCTGTTGTTGGTTGCAATAGAAAAATGTTGTTATTGTTTGTTGTTTTATGATTTGATGTTGCTGCTGGCCGTGAAGAATTAGGAGATCACATACATTGATTAAGTGATGATTGCATGCTAACATAGATTGATAGAATATTGTTTGAATGTTAATATGCATAATTTCTATTCTATTAGTAAGTCCGTGGTAAGTGTTAACCATACAGACACCATTTTTTTAATTTCCTCATCATCAATTCATATTGATTAGTGTGTTGTACAGGTACTAGAACTTCTAAAGCATGCTTTGGTTTCCCAAACATCCCTCACTCTCACTGATTGGATTTTAGGAATCAAACCAACCCTCGAAAGGTCACAGTTCTTCCCTTGTGATGTTAAAAACAATAGTGACATCAAATTTAGTGTGACACTAGTCTTAAAAAAATCTGTAAACAAAATTCTGTATGCTCTAGTGAGTAAAAAATTTGCTGATTTTTTACTCAGCCTTCTCTCATTTCCTTTGGGAGCTGTTATTCATTTATTAGAAGGGAAATGTTGTGTAGGAAGTATGGATTTGATATACAATAGCATACTTAAGTTGGATGACAAATATATGAAATCAATGGATTCAAAAAAGAGGCTCATTAATCCACGCATGGGCTGTCAATTTAACTTAAGCAACCAGATTTCGGAAATTGAAGAAAAGATGTCGTATTATTGTTATTATCAAGGTAATACCTTCAAAGAAAGTATCAACCATGGAGAATTTTACATAACTGATGTATTCAAGATTCATGAGAAAAAGGTTAGAAAATTGAGCTTAATCGATTATCCCATACCATCTAAAGGAAATCCTCATGGTTATGTGAAGGACCATAAAATCTTTTTGGTTACAGATGAGTTGGTCTTTAAACCATCTTGCCCAATTTCAGATTTCGAGTTTTTGAAGTCTCTAGAGATTCCTCTAAATGACGTGAAGAACAAGGTCGTCACTTTTGGGCTAAAAGAGGTAAGAAAATCAAACCTCTTTCACCAATGCATTGTTTTGTGTTTGCTATAATAATTGAATGCATCATTATCTATTTCTTATGGTTTTGTTGGTGCAGTGTTTGAACATATTGAAGGCCGCTTTGACTTCAGATTCTGCACTAACAAATGGTTTGCTATGCTACATTGACCCTATGTTACAAATAGTCTAG
Protein sequence

>MS.gene007488.t1

MGHITYEATGEDNNNDIVTSEQGGVVVATEATVELKLLIDKETNNVIFAEAGKDFVDILFSFLTLPLGTIARLIESDCDIGPIQLGCLNTLYASVKALDVGSLTTNTIKQMIIPSKEETRSYHDDLKLYIHDNEPYKYFLCSKLEKESCSCFLSVSANHSCYTCRNPMNFPVAAKHLGKESVREGNTFIITADLAVYPLTTEYLTYLTSFVRETINVNAEKVLELLKHALVSQTSLTLTDWILGIKPTLESLLSFPLGAVIHLLEGKCCVGSMDLIYNSILKLDDKYMKSMDSKKRLINPRMGCQFNLSNQISEIEEKMSYYCYYQGNTFKESINHGEFYITDVFKIHEKKVRKLSLIDYPIPSKGNPHGYVKDHKIFLVTDELVFKPSCPISDFEFLKSLEIPLNDVKNKVVTFGLKECLNILKAALTSDSALTNGLLCYIDPMLQIV