AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99614

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99614.t1 MTR_7g062280 76.578 491 97 4 5 478 3 492 0.0 725
MS.gene99614.t1 MTR_7g062300 78.151 476 94 4 1 470 1 472 0.0 711
MS.gene99614.t1 MTR_7g063920 63.883 479 127 5 3 478 2 437 0.0 566
MS.gene99614.t1 MTR_7g063880 54.713 488 187 9 3 477 2 468 1.33e-164 473
MS.gene99614.t1 MTR_7g063900 54.309 499 197 11 1 478 1 489 1.22e-159 461
MS.gene99614.t1 MTR_7g063840 54.105 475 204 8 10 478 8 474 4.63e-159 459
MS.gene99614.t1 MTR_7g063660 53.222 481 210 7 7 478 4 478 5.94e-156 451
MS.gene99614.t1 MTR_7g063830 52.610 479 190 9 1 477 1 444 4.00e-152 441
MS.gene99614.t1 MTR_7g063820 51.738 489 215 8 5 478 3 485 3.09e-149 435
MS.gene99614.t1 MTR_3g007740 51.674 478 179 12 8 472 5 443 3.61e-142 415
MS.gene99614.t1 MTR_7g063890 52.990 485 206 10 10 477 25 504 3.26e-137 405
MS.gene99614.t1 MTR_7g063670 50.311 483 189 10 10 478 13 458 5.08e-136 400
MS.gene99614.t1 MTR_7g066570 41.093 494 254 8 4 475 6 484 5.92e-107 329
MS.gene99614.t1 MTR_7g066430 41.036 502 251 8 13 477 5 498 1.66e-106 326
MS.gene99614.t1 MTR_7g066430 26.423 246 152 10 1 230 247 479 3.53e-13 72.0
MS.gene99614.t1 MTR_7g066430 27.826 230 138 8 256 465 4 225 3.75e-13 72.0
MS.gene99614.t1 MTR_7g066260 42.116 482 239 13 4 471 7 462 1.38e-103 318
MS.gene99614.t1 MTR_7g066410 37.885 520 270 11 1 473 1 514 6.03e-103 317
MS.gene99614.t1 MTR_3g065200 41.357 457 207 10 12 458 3 408 7.39e-98 302
MS.gene99614.t1 MTR_7g012680 39.919 491 235 14 4 478 6 452 7.56e-92 286
MS.gene99614.t1 MTR_7g066360 40.452 487 224 14 2 467 4 445 6.28e-90 283
MS.gene99614.t1 MTR_7g058710 35.010 517 264 11 1 478 1 484 3.48e-89 281
MS.gene99614.t1 MTR_7g066290 38.462 481 231 9 3 471 6 433 1.53e-88 277
MS.gene99614.t1 MTR_7g066350 38.689 473 247 9 13 473 10 451 1.58e-88 278
MS.gene99614.t1 MTR_7g066350 35.586 222 128 7 256 465 9 227 3.20e-21 96.7
MS.gene99614.t1 MTR_7g066580 37.684 475 239 9 24 474 7 448 9.55e-88 276
MS.gene99614.t1 MTR_7g066580 27.966 236 146 9 11 231 214 440 8.47e-13 70.5
MS.gene99614.t1 MTR_7g066340 37.397 484 259 12 1 471 1 453 2.27e-87 276
MS.gene99614.t1 MTR_7g066340 30.380 237 144 8 256 476 12 243 7.52e-16 80.1
MS.gene99614.t1 MTR_7g066480 37.844 473 216 9 12 472 16 422 9.89e-86 270
MS.gene99614.t1 MTR_7g062270 67.742 186 58 2 3 188 2 185 1.13e-82 261
MS.gene99614.t1 MTR_7g066400 34.765 489 253 10 1 473 1 439 1.21e-82 263
MS.gene99614.t1 MTR_7g066490 35.760 467 218 8 12 471 16 407 5.87e-80 254
MS.gene99614.t1 MTR_1g041315 34.454 476 260 8 3 455 5 451 6.39e-80 257
MS.gene99614.t1 MTR_7g063720 53.469 245 99 4 236 478 2 233 9.38e-78 243
MS.gene99614.t1 MTR_7g063720 28.829 222 125 9 15 230 26 220 2.12e-16 79.0
MS.gene99614.t1 MTR_4g019310 34.325 504 292 13 6 478 2 497 3.84e-77 250
MS.gene99614.t1 MTR_7g058700 34.316 475 215 10 24 478 531 928 8.61e-73 247
MS.gene99614.t1 MTR_4g017830 31.369 526 293 16 1 477 1 507 1.52e-61 209
MS.gene99614.t1 MTR_2g029400 31.144 472 243 8 2 461 4 405 4.77e-60 202
MS.gene99614.t1 MTR_7g063850 42.574 303 151 9 183 477 1 288 3.75e-59 196
MS.gene99614.t1 MTR_4g019340 30.992 484 284 13 9 459 35 501 5.72e-54 189
MS.gene99614.t1 MTR_4g017410 31.238 525 271 17 6 477 3 490 8.29e-54 188
MS.gene99614.t1 MTR_4g017410 28.163 245 149 6 259 478 12 254 1.64e-12 69.7
MS.gene99614.t1 MTR_4g017440 30.874 515 287 18 6 471 8 502 2.92e-53 187
MS.gene99614.t1 MTR_4g017610 31.111 495 293 16 1 467 1 475 9.25e-50 177
MS.gene99614.t1 MTR_4g017610 28.033 239 149 6 259 477 16 251 7.09e-13 70.9
MS.gene99614.t1 MTR_4g017470 28.433 517 289 12 1 477 1 476 1.07e-49 177
MS.gene99614.t1 MTR_7g100420 39.809 314 155 8 169 467 99 393 2.53e-49 174
MS.gene99614.t1 MTR_7g100420 62.963 54 18 1 2 55 31 82 5.27e-12 67.8
MS.gene99614.t1 MTR_7g066280 31.235 413 229 11 91 471 1 390 4.62e-49 173
MS.gene99614.t1 MTR_1g014060 42.439 205 113 4 21 223 9 210 1.46e-42 155
MS.gene99614.t1 MTR_1g014060 38.860 193 107 3 286 478 210 391 7.28e-32 126
MS.gene99614.t1 MTR_1g014060 30.583 206 117 7 269 457 13 209 4.98e-18 86.3
MS.gene99614.t1 MTR_7g066680 34.539 304 144 7 213 467 37 334 4.21e-39 145
MS.gene99614.t1 MTR_7g066680 27.434 226 136 8 2 215 77 286 5.22e-13 70.5
MS.gene99614.t1 MTR_8g023240 27.505 469 301 13 13 465 38 483 5.75e-39 149
MS.gene99614.t1 MTR_4g017550 28.211 475 270 16 42 469 21 471 8.26e-35 136
MS.gene99614.t1 MTR_4g017550 30.726 179 103 5 15 180 250 420 1.90e-12 69.7
MS.gene99614.t1 MTR_7g066310 37.037 216 111 3 256 471 193 383 6.27e-34 132
MS.gene99614.t1 MTR_7g066310 45.588 136 73 1 13 148 8 142 4.43e-29 118
MS.gene99614.t1 MTR_7g063690 45.070 142 76 1 144 283 81 222 4.38e-30 117
MS.gene99614.t1 MTR_7g063690 63.333 60 21 1 3 61 2 61 1.44e-14 73.6
MS.gene99614.t1 MTR_8g445860 32.530 249 135 10 3 236 8 238 1.28e-24 102
MS.gene99614.t1 MTR_7g063760 56.757 74 31 1 406 478 1 74 9.63e-22 89.4
MS.gene99614.t1 MTR_1g115440 31.746 252 141 9 1 235 1 238 3.23e-21 92.8
MS.gene99614.t1 MTR_1g115440 29.870 231 133 10 256 465 11 233 4.67e-18 84.0
MS.gene99614.t1 MTR_0150s0010 30.204 245 147 7 5 235 3 237 5.40e-20 89.4
MS.gene99614.t1 MTR_0150s0010 28.571 224 143 6 256 464 10 231 2.50e-16 79.0
MS.gene99614.t1 MTR_7g066390 57.971 69 29 0 399 467 50 118 7.45e-18 80.9
MS.gene99614.t1 MTR_2g067310 35.057 174 69 5 12 181 43 176 7.04e-15 74.7
MS.gene99614.t1 MTR_1g115455 28.226 248 151 8 1 236 1 233 5.06e-14 72.0
MS.gene99614.t1 MTR_7g063870 57.143 56 24 0 6 61 25 80 8.46e-14 71.6
MS.gene99614.t1 MTR_7g063870 53.333 60 28 0 161 220 98 157 4.99e-12 66.6
MS.gene99614.t1 MTR_4g019240 36.364 110 60 3 11 112 12 119 2.80e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99614.t1 AT5G01120 33.196 485 291 10 13 470 10 488 1.72e-64 217
MS.gene99614.t1 AT3G09140 33.004 506 278 13 11 473 8 495 6.03e-64 215
MS.gene99614.t1 AT5G01150 30.060 499 296 10 7 473 4 481 3.68e-59 202
MS.gene99614.t1 AT3G09140 31.273 534 278 14 11 473 8 523 5.54e-59 203
MS.gene99614.t1 AT5G01130 29.495 495 279 14 7 478 4 451 3.69e-54 188
MS.gene99614.t1 AT5G01130 24.889 225 156 6 249 465 2 221 3.41e-11 65.5
MS.gene99614.t1 AT3G09110 36.562 320 173 8 15 317 12 318 7.04e-53 182
MS.gene99614.t1 AT5G01140 29.158 487 298 10 7 478 4 458 1.81e-50 179
MS.gene99614.t1 AT5G43240 30.219 503 280 14 13 467 10 489 3.27e-50 179
MS.gene99614.t1 AT5G43240 30.219 503 280 14 13 467 10 489 3.27e-50 179
MS.gene99614.t1 AT5G43240 30.219 503 280 14 13 467 10 489 3.27e-50 179
MS.gene99614.t1 AT3G09120 36.615 325 172 10 7 310 2 313 1.37e-47 167
MS.gene99614.t1 AT3G09120 27.917 240 137 7 251 465 1 229 7.69e-13 69.7
MS.gene99614.t1 AT5G37320 28.571 504 259 17 26 473 23 481 1.09e-36 141
MS.gene99614.t1 AT5G43240 28.963 328 192 9 168 467 31 345 5.26e-20 92.0

Find 88 sgRNAs with CRISPR-Local

Find 108 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTCGGGGAGAGGTTTA+AGG 0.199576 7.1:+39223667 None:intergenic
CCACCTGTTTGTAATTATTA+TGG 0.205658 7.1:-39222994 MS.gene99614:CDS
GGAGGAATCGCACGGATATT+TGG 0.238302 7.1:-39223177 MS.gene99614:CDS
CTCCCCGAAGGATTTGTTAA+TGG 0.264468 7.1:-39223657 MS.gene99614:CDS
TTTAATCTGTTCACGGAGTT+TGG 0.282622 7.1:-39223570 MS.gene99614:CDS
GTCAATACAGTTTGGCTTGA+TGG 0.284902 7.1:+39223602 None:intergenic
CATCCGATGATGTCAAATAT+TGG 0.288315 7.1:+39223091 None:intergenic
CAAACAGGTGGTTGAAGAAT+TGG 0.296733 7.1:+39223006 None:intergenic
GGGAGAGGTTTAAGGAAAAT+TGG 0.296810 7.1:+39223675 None:intergenic
GCACAAGAGTATAGTTGATT+TGG 0.297533 7.1:-39223121 MS.gene99614:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.1:+39222793 None:intergenic
TGCGAGCCAAACCATTTGTT+AGG 0.349126 7.1:+39222579 None:intergenic
ATTGACTCCAATTTCAGCTT+TGG 0.362521 7.1:-39222800 MS.gene99614:CDS
TTGACTCCAATTTCAGCTTT+GGG 0.364093 7.1:-39222799 MS.gene99614:CDS
CTTGTATAGTCAATACAGTT+TGG 0.367447 7.1:+39223594 None:intergenic
AACCATCCCTTGAGAGTTCA+AGG 0.367767 7.1:-39223344 MS.gene99614:CDS
TACGTTGATGCGATCATATC+CGG 0.377785 7.1:+39223741 None:intergenic
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.1:-39223994 MS.gene99614:CDS
AACTCCCCTTAATGATTTGA+AGG 0.395649 7.1:-39222758 MS.gene99614:CDS
TTATCTAATGTGATGATTCC+TGG 0.396168 7.1:-39222883 MS.gene99614:CDS
TTCTTGCTTAACTTTAACTG+TGG 0.402454 7.1:+39223036 None:intergenic
TACACCATTAACAAATCCTT+CGG 0.402487 7.1:+39223653 None:intergenic
TTCGTTCAAAAGAAGTTTCA+AGG 0.403627 7.1:+39224091 None:intergenic
ACATGCGCTGCCAACTCTAA+TGG 0.404291 7.1:-39223774 MS.gene99614:CDS
TGCTTCTTAACAATGCCTTT+AGG 0.405563 7.1:-39224011 MS.gene99614:CDS
TGTTCCTTGGGAAGCATCAA+TGG 0.409256 7.1:-39223147 MS.gene99614:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7.1:-39224059 MS.gene99614:CDS
ATCTGCCCTAACAAATGGTT+TGG 0.417279 7.1:-39222585 MS.gene99614:CDS
ACACCATTAACAAATCCTTC+GGG 0.420990 7.1:+39223654 None:intergenic
CAAATCTGTCAAGGTTGACT+TGG 0.429040 7.1:+39223380 None:intergenic
TCATCTTCGGCTGAGTTGAT+TGG 0.429771 7.1:+39223849 None:intergenic
GTAGTGTCTTAACATATTGA+AGG 0.434262 7.1:-39222624 MS.gene99614:intron
CCATAGTTCGGTAAAAGAAA+TGG 0.436185 7.1:-39223538 MS.gene99614:CDS
ATTTGGAGGGAATTGTTCCT+TGG 0.442429 7.1:-39223160 MS.gene99614:CDS
CCTGGTGATGGTTATGTAAA+GGG 0.442731 7.1:-39222865 MS.gene99614:CDS
TCTGAATGTCACTAAAGAAA+AGG 0.453648 7.1:-39223514 MS.gene99614:intron
TACAAGCTTTAATCTGTTCA+CGG 0.462133 7.1:-39223577 MS.gene99614:CDS
AAGAGCGCTGCAATCATCTT+CGG 0.463496 7.1:+39223836 None:intergenic
CAACCATAATAATTACAAAC+AGG 0.468189 7.1:+39222991 None:intergenic
TCGCATGCTAACTGAAGTTA+AGG 0.479595 7.1:-39222561 MS.gene99614:CDS
TCAACATCTGCCCTAACAAA+TGG 0.480143 7.1:-39222590 MS.gene99614:CDS
GTATGATGGTGAAATTGTTA+AGG 0.481094 7.1:-39223313 MS.gene99614:CDS
TTTGGAGGGAATTGTTCCTT+GGG 0.486733 7.1:-39223159 MS.gene99614:CDS
AAAGCTGAAATTGGAGTCAA+TGG 0.488614 7.1:+39222802 None:intergenic
CTCTAATGGCTGCTATGCTC+CGG 0.491754 7.1:-39223760 MS.gene99614:CDS
AGTTATAACTATTGGCATCA+AGG 0.496598 7.1:-39222731 MS.gene99614:CDS
TTAACAAATCCTTCGGGGAG+AGG 0.506746 7.1:+39223660 None:intergenic
TCTTGCTTAACTTTAACTGT+GGG 0.513623 7.1:+39223037 None:intergenic
AGCATAGCAGCCATTAGAGT+TGG 0.515293 7.1:+39223764 None:intergenic
CATCATCGGATGCTAAGAAC+AGG 0.519251 7.1:-39223080 MS.gene99614:CDS
AACAAGGTATTGCATGCTCA+AGG 0.520968 7.1:-39223249 MS.gene99614:CDS
GCGAGCCAAACCATTTGTTA+GGG 0.525315 7.1:+39222580 None:intergenic
AACCTTGAACTCTCAAGGGA+TGG 0.527200 7.1:+39223342 None:intergenic
TCTGTAGCAAAATACATAGC+TGG 0.536774 7.1:+39222841 None:intergenic
CTTGTTTGCAGAAGCAGGGA+AGG 0.539743 7.1:-39224054 MS.gene99614:CDS
GCGCATGTGAAGTACTTTGT+TGG 0.540167 7.1:+39223789 None:intergenic
TTCCTTAAACCTCTCCCCGA+AGG 0.546449 7.1:-39223669 MS.gene99614:CDS
TTTCTTACATTTCCTTTGGG+AGG 0.556193 7.1:-39223195 MS.gene99614:CDS
TCCTGGTGATGGTTATGTAA+AGG 0.556342 7.1:-39222866 MS.gene99614:CDS
TGATGAAGGCTGTATGTCTA+CGG 0.561304 7.1:-39223898 MS.gene99614:CDS
AAACCAATATTTGACATCAT+CGG 0.567419 7.1:-39223094 MS.gene99614:CDS
TCGTTCAAAAGAAGTTTCAA+GGG 0.570431 7.1:+39224092 None:intergenic
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7.1:-39224058 MS.gene99614:CDS
GGAATCGCACGGATATTTGG+AGG 0.575501 7.1:-39223174 MS.gene99614:CDS
CCCTTTACATAACCATCACC+AGG 0.576971 7.1:+39222865 None:intergenic
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.1:-39223985 MS.gene99614:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.1:+39223996 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7.1:-39223971 MS.gene99614:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7.1:-39223972 MS.gene99614:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.1:+39223986 None:intergenic
CAATCCATTGATGCTTCCCA+AGG 0.600380 7.1:+39223143 None:intergenic
TTTAACTGTGGGGCAATGCG+AGG 0.601228 7.1:+39223048 None:intergenic
TAACTGGCTTCAGAATGACT+TGG 0.602428 7.1:+39223286 None:intergenic
TTCCTTTGGGAGGAATCGCA+CGG 0.612967 7.1:-39223185 MS.gene99614:CDS
ATCCGTGCGATTCCTCCCAA+AGG 0.623809 7.1:+39223183 None:intergenic
AAACTCACTCTATAAAAGTG+TGG 0.625241 7.1:-39223928 MS.gene99614:CDS
TATAAGAAAATCTGATAACA+AGG 0.628383 7.1:-39223265 MS.gene99614:CDS
AGCATAGGGCAAGTTACACT+CGG 0.634874 7.1:-39223957 MS.gene99614:CDS
ACAAGGTATTGCATGCTCAA+GGG 0.636866 7.1:-39223248 MS.gene99614:CDS
CCATAATAATTACAAACAGG+TGG 0.643844 7.1:+39222994 None:intergenic
CTTGCTTAACTTTAACTGTG+GGG 0.646219 7.1:+39223038 None:intergenic
AATGTGATGATTCCTGGTGA+TGG 0.650008 7.1:-39222877 MS.gene99614:CDS
GATAAATATAAATGTCAGTG+TGG 0.654651 7.1:-39223714 MS.gene99614:CDS
GAATCGCACGGATATTTGGA+GGG 0.659768 7.1:-39223173 MS.gene99614:CDS
CACCATTAACAAATCCTTCG+GGG 0.660340 7.1:+39223655 None:intergenic
AGTGTGGCAGATCTTGATGA+AGG 0.665549 7.1:-39223912 MS.gene99614:CDS
TGAAGGCTGTATGTCTACGG+AGG 0.712068 7.1:-39223895 MS.gene99614:CDS
TATAACTATTGGCATCAAGG+AGG 0.725061 7.1:-39222728 MS.gene99614:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGGAAAAAGTTATAACTAT+TGG - chr7.1:39223942-39223961 MS.gene99614:CDS 20.0%
!! TATAAGAAAATCTGATAACA+AGG - chr7.1:39223416-39223435 MS.gene99614:intron 20.0%
!!! ATTCATTTTGAAATCAAATC+TGG - chr7.1:39223744-39223763 MS.gene99614:CDS 20.0%
!!! TTATCAGATTTTCTTATAAC+TGG + chr7.1:39223414-39223433 None:intergenic 20.0%
!!! TTTTTCCTTCAAATCATTAA+GGG + chr7.1:39223931-39223950 None:intergenic 20.0%
! AAACCAATATTTGACATCAT+CGG - chr7.1:39223587-39223606 MS.gene99614:CDS 25.0%
! CAACCATAATAATTACAAAC+AGG + chr7.1:39223693-39223712 None:intergenic 25.0%
! GATAAATATAAATGTCAGTG+TGG - chr7.1:39222967-39222986 MS.gene99614:CDS 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.1:39222595-39222614 MS.gene99614:CDS 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG - chr7.1:39223482-39223501 MS.gene99614:intron 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7.1:39223483-39223502 MS.gene99614:intron 25.0%
!! CTTTTTCCTTCAAATCATTA+AGG + chr7.1:39223932-39223951 None:intergenic 25.0%
!! TAACTACTACTGTTTTATAC+AGG - chr7.1:39223248-39223267 MS.gene99614:CDS 25.0%
!! TTTTCCTTCAAATCATTAAG+GGG + chr7.1:39223930-39223949 None:intergenic 25.0%
AAACTCACTCTATAAAAGTG+TGG - chr7.1:39222753-39222772 MS.gene99614:CDS 30.0%
AGTTATAACTATTGGCATCA+AGG - chr7.1:39223950-39223969 MS.gene99614:CDS 30.0%
CCACCTGTTTGTAATTATTA+TGG - chr7.1:39223687-39223706 MS.gene99614:CDS 30.0%
CCATAATAATTACAAACAGG+TGG + chr7.1:39223690-39223709 None:intergenic 30.0%
CTTGTATAGTCAATACAGTT+TGG + chr7.1:39223090-39223109 None:intergenic 30.0%
GTAGTGTCTTAACATATTGA+AGG - chr7.1:39224057-39224076 MS.gene99614:CDS 30.0%
TACACCATTAACAAATCCTT+CGG + chr7.1:39223031-39223050 None:intergenic 30.0%
TCGTTCAAAAGAAGTTTCAA+GGG + chr7.1:39222592-39222611 None:intergenic 30.0%
TCTGAATGTCACTAAAGAAA+AGG - chr7.1:39223167-39223186 MS.gene99614:CDS 30.0%
TCTTGCTTAACTTTAACTGT+GGG + chr7.1:39223647-39223666 None:intergenic 30.0%
TGGCATAAAAAACCATAGTT+CGG - chr7.1:39223131-39223150 MS.gene99614:CDS 30.0%
TTATCTAATGTGATGATTCC+TGG - chr7.1:39223798-39223817 MS.gene99614:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.1:39222593-39222612 None:intergenic 30.0%
TTCTTGCTTAACTTTAACTG+TGG + chr7.1:39223648-39223667 None:intergenic 30.0%
! GTATGATGGTGAAATTGTTA+AGG - chr7.1:39223368-39223387 MS.gene99614:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7.1:39223848-39223867 MS.gene99614:CDS 30.0%
! TACAAGCTTTAATCTGTTCA+CGG - chr7.1:39223104-39223123 MS.gene99614:CDS 30.0%
!! ACCTTGACAGATTTGTTTTT+AGG - chr7.1:39223309-39223328 MS.gene99614:CDS 30.0%
!!! CCTTGACAGATTTGTTTTTA+GGG - chr7.1:39223310-39223329 MS.gene99614:CDS 30.0%
AAAGCTGAAATTGGAGTCAA+TGG + chr7.1:39223882-39223901 None:intergenic 35.0%
AACTCCCCTTAATGATTTGA+AGG - chr7.1:39223923-39223942 MS.gene99614:CDS 35.0%
ACACCATTAACAAATCCTTC+GGG + chr7.1:39223030-39223049 None:intergenic 35.0%
AGAAAAACCTTGAACTCTCA+AGG + chr7.1:39223347-39223366 None:intergenic 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.1:39223891-39223910 None:intergenic 35.0%
CATCCGATGATGTCAAATAT+TGG + chr7.1:39223593-39223612 None:intergenic 35.0%
CCATAGTTCGGTAAAAGAAA+TGG - chr7.1:39223143-39223162 MS.gene99614:CDS 35.0%
CCCTAAAAACAAATCTGTCA+AGG + chr7.1:39223313-39223332 None:intergenic 35.0%
CTTGCTTAACTTTAACTGTG+GGG + chr7.1:39223646-39223665 None:intergenic 35.0%
GAAAAACCTTGAACTCTCAA+GGG + chr7.1:39223346-39223365 None:intergenic 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7.1:39222710-39222729 MS.gene99614:intron 35.0%
TATAACTATTGGCATCAAGG+AGG - chr7.1:39223953-39223972 MS.gene99614:CDS 35.0%
TCTGTAGCAAAATACATAGC+TGG + chr7.1:39223843-39223862 None:intergenic 35.0%
TGCTTCTTAACAATGCCTTT+AGG - chr7.1:39222670-39222689 MS.gene99614:intron 35.0%
TTGACTCCAATTTCAGCTTT+GGG - chr7.1:39223882-39223901 MS.gene99614:CDS 35.0%
TTTAATCTGTTCACGGAGTT+TGG - chr7.1:39223111-39223130 MS.gene99614:CDS 35.0%
TTTCTTACATTTCCTTTGGG+AGG - chr7.1:39223486-39223505 MS.gene99614:intron 35.0%
! ATTGACTCCAATTTCAGCTT+TGG - chr7.1:39223881-39223900 MS.gene99614:CDS 35.0%
! CATTAAGGGGAGTTTTCAAT+CGG + chr7.1:39223917-39223936 None:intergenic 35.0%
! CCATTTCTTTTACCGAACTA+TGG + chr7.1:39223146-39223165 None:intergenic 35.0%
! GCACAAGAGTATAGTTGATT+TGG - chr7.1:39223560-39223579 MS.gene99614:CDS 35.0%
! TCAAGGTTTTTCTCGTATGA+TGG - chr7.1:39223354-39223373 MS.gene99614:CDS 35.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.1:39222688-39222707 None:intergenic 40.0%
AATGTGATGATTCCTGGTGA+TGG - chr7.1:39223804-39223823 MS.gene99614:CDS 40.0%
ATCTGCCCTAACAAATGGTT+TGG - chr7.1:39224096-39224115 MS.gene99614:CDS 40.0%
ATTTGGAGGGAATTGTTCCT+TGG - chr7.1:39223521-39223540 MS.gene99614:CDS 40.0%
CAAACAGGTGGTTGAAGAAT+TGG + chr7.1:39223678-39223697 None:intergenic 40.0%
CAAATCTGTCAAGGTTGACT+TGG + chr7.1:39223304-39223323 None:intergenic 40.0%
CACCATTAACAAATCCTTCG+GGG + chr7.1:39223029-39223048 None:intergenic 40.0%
GGGAGAGGTTTAAGGAAAAT+TGG + chr7.1:39223009-39223028 None:intergenic 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7.1:39222709-39222728 MS.gene99614:intron 40.0%
TACGTTGATGCGATCATATC+CGG + chr7.1:39222943-39222962 None:intergenic 40.0%
TCAACATCTGCCCTAACAAA+TGG - chr7.1:39224091-39224110 MS.gene99614:CDS 40.0%
TCGCATGCTAACTGAAGTTA+AGG - chr7.1:39224120-39224139 MS.gene99614:CDS 40.0%
TGATGAAGGCTGTATGTCTA+CGG - chr7.1:39222783-39222802 MS.gene99614:CDS 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.1:39222687-39222706 MS.gene99614:intron 40.0%
TTTGGAGGGAATTGTTCCTT+GGG - chr7.1:39223522-39223541 MS.gene99614:CDS 40.0%
! TAACTGGCTTCAGAATGACT+TGG + chr7.1:39223398-39223417 None:intergenic 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.1:39222622-39222641 MS.gene99614:CDS 40.0%
!! AACAAGGTATTGCATGCTCA+AGG - chr7.1:39223432-39223451 MS.gene99614:intron 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG - chr7.1:39222623-39222642 MS.gene99614:CDS 40.0%
!! ACAAGGTATTGCATGCTCAA+GGG - chr7.1:39223433-39223452 MS.gene99614:intron 40.0%
!! CCTGGTGATGGTTATGTAAA+GGG - chr7.1:39223816-39223835 MS.gene99614:CDS 40.0%
!! GTCAATACAGTTTGGCTTGA+TGG + chr7.1:39223082-39223101 None:intergenic 40.0%
!! TCCTGGTGATGGTTATGTAA+AGG - chr7.1:39223815-39223834 MS.gene99614:CDS 40.0%
AACCATCCCTTGAGAGTTCA+AGG - chr7.1:39223337-39223356 MS.gene99614:CDS 45.0%
AACCTTGAACTCTCAAGGGA+TGG + chr7.1:39223342-39223361 None:intergenic 45.0%
AGCATAGCAGCCATTAGAGT+TGG + chr7.1:39222920-39222939 None:intergenic 45.0%
AGCATAGGGCAAGTTACACT+CGG - chr7.1:39222724-39222743 MS.gene99614:intron 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7.1:39222769-39222788 MS.gene99614:CDS 45.0%
CAATCCATTGATGCTTCCCA+AGG + chr7.1:39223541-39223560 None:intergenic 45.0%
CATCATCGGATGCTAAGAAC+AGG - chr7.1:39223601-39223620 MS.gene99614:CDS 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.1:39222696-39222715 MS.gene99614:intron 45.0%
CCCTTTACATAACCATCACC+AGG + chr7.1:39223819-39223838 None:intergenic 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.1:39222698-39222717 None:intergenic 45.0%
GAATCGCACGGATATTTGGA+GGG - chr7.1:39223508-39223527 MS.gene99614:intron 45.0%
TGCGAGCCAAACCATTTGTT+AGG + chr7.1:39224105-39224124 None:intergenic 45.0%
TTAACAAATCCTTCGGGGAG+AGG + chr7.1:39223024-39223043 None:intergenic 45.0%
! GCGAGCCAAACCATTTGTTA+GGG + chr7.1:39224104-39224123 None:intergenic 45.0%
! GCGCATGTGAAGTACTTTGT+TGG + chr7.1:39222895-39222914 None:intergenic 45.0%
!! AAGAGCGCTGCAATCATCTT+CGG + chr7.1:39222848-39222867 None:intergenic 45.0%
!! CTCCCCGAAGGATTTGTTAA+TGG - chr7.1:39223024-39223043 MS.gene99614:CDS 45.0%
!! TCATCTTCGGCTGAGTTGAT+TGG + chr7.1:39222835-39222854 None:intergenic 45.0%
!! TGTTCCTTGGGAAGCATCAA+TGG - chr7.1:39223534-39223553 MS.gene99614:CDS 45.0%
ACATGCGCTGCCAACTCTAA+TGG - chr7.1:39222907-39222926 MS.gene99614:CDS 50.0%
ATCCTTCGGGGAGAGGTTTA+AGG + chr7.1:39223017-39223036 None:intergenic 50.0%
CTCTAATGGCTGCTATGCTC+CGG - chr7.1:39222921-39222940 MS.gene99614:CDS 50.0%
CTTGTTTGCAGAAGCAGGGA+AGG - chr7.1:39222627-39222646 MS.gene99614:intron 50.0%
GGAATCGCACGGATATTTGG+AGG - chr7.1:39223507-39223526 MS.gene99614:intron 50.0%
GGAGGAATCGCACGGATATT+TGG - chr7.1:39223504-39223523 MS.gene99614:intron 50.0%
TGAAGGCTGTATGTCTACGG+AGG - chr7.1:39222786-39222805 MS.gene99614:CDS 50.0%
TTCCTTAAACCTCTCCCCGA+AGG - chr7.1:39223012-39223031 MS.gene99614:CDS 50.0%
TTTAACTGTGGGGCAATGCG+AGG + chr7.1:39223636-39223655 None:intergenic 50.0%
! TTCCTTTGGGAGGAATCGCA+CGG - chr7.1:39223496-39223515 MS.gene99614:intron 50.0%
ATCCGTGCGATTCCTCCCAA+AGG + chr7.1:39223501-39223520 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 39222550 39224153 39222550 ID=MS.gene99614
chr7.1 mRNA 39222550 39224153 39222550 ID=MS.gene99614.t1;Parent=MS.gene99614
chr7.1 exon 39223515 39224153 39223515 ID=MS.gene99614.t1.exon1;Parent=MS.gene99614.t1
chr7.1 CDS 39223515 39224153 39223515 ID=cds.MS.gene99614.t1;Parent=MS.gene99614.t1
chr7.1 exon 39222729 39223433 39222729 ID=MS.gene99614.t1.exon2;Parent=MS.gene99614.t1
chr7.1 CDS 39222729 39223433 39222729 ID=cds.MS.gene99614.t1;Parent=MS.gene99614.t1
chr7.1 exon 39222550 39222642 39222550 ID=MS.gene99614.t1.exon3;Parent=MS.gene99614.t1
chr7.1 CDS 39222550 39222642 39222550 ID=cds.MS.gene99614.t1;Parent=MS.gene99614.t1
Gene Sequence

>MS.gene99614

ATGGGTGCTACTACTTCTACTCAAGCAGAGAAGCATGTGCCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTTGACATTCTCTGTTGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACACTCGGTTGTCTAAACTCACTCTATAAAAGTGTGGCAGATCTTGATGAAGGCTGTATGTCTACGGAGGCAATCAAGCAAATGCTTCTACAACCAATCAACTCAGCCGAAGATGATTGCAGCGCTCTTAAATTCAACATCGATGACACTCAACCAACAAAGTACTTCACATGCGCTGCCAACTCTAATGGCTGCTATGCTCCGGATATGATCGCATCAACGTATAAAGATAAATATAAATGTCAGTGTGGTCGTTCTTTTAGACTTCCAATTTTCCTTAAACCTCTCCCCGAAGGATTTGTTAATGGTGTAACTACTTTTGTCATAACTGATGATCTCACCATCAAGCCAAACTGTATTGACTATACAAGCTTTAATCTGTTCACGGAGTTTGGCATAAAAAACCATAGTTCGGTAAAAGAAATGGTTCTGAATGTCACTAAAGAAAAGGTTTTGTATTTGAATACTGCGTTTGTTTATAACATCTCTCTTAAATTTTTGATTGATTATAACTACTACTGTTTTATACAGGTACTTGATTTGCTAAAGTGTTCTTTGCTTTCCAAGTCAACCTTGACAGATTTGTTTTTAGGGAAGAAACCATCCCTTGAGAGTTCAAGGTTTTTCTCGTATGATGGTGAAATTGTTAAGGATATCCAAGTCATTCTGAAGCCAGTTATAAGAAAATCTGATAACAAGGTATTGCATGCTCAAGGGCAGCAAGATTTTGCAAACTTACTTTTAAGTTTTCTTACATTTCCTTTGGGAGGAATCGCACGGATATTTGGAGGGAATTGTTCCTTGGGAAGCATCAATGGATTGCACAAGAGTATAGTTGATTTGGATGAAAACCAATATTTGACATCATCGGATGCTAAGAACAGGCTTGTTCATCCTCGCATTGCCCCACAGTTAAAGTTAAGCAAGAAGATATTACCAATTCTTCAACCACCTGTTTGTAATTATTATGGTTGTTTTGATAGTTCTGTTAAAACTAATAAAATAATTCATTTTGAAATCAAATCTGGAACATATGTAACAAATTTGAAGAAAATGAATTTATCTAATGTGATGATTCCTGGTGATGGTTATGTAAAGGGTCCAGCTATGTATTTTGCTACAGATGATTTGGTTGTAGCACCATTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTGAAAACTCCCCTTAATGATTTGAAGGAAAAAGTTATAACTATTGGCATCAAGGAGGTAAATGCATAGTAAAATTCTTAATATAGTTTTAATCTTTACATTATTTATAAATTGCTTATGTTTATCTTCTTGTCTCGTTGTAGTGTCTTAACATATTGAAGGCTTCTTTGACATCAACATCTGCCCTAACAAATGGTTTGGCTCGCATGCTAACTGAAGTTAAGGACGAGAAATGA
Protein sequence

>MS.gene99614.t1

MGATTSTQAEKHVPLKLLLNENGNKVLFAEAGKDFVDILCCFLTMPLGTIARLVEKESSIGQVTLGCLNSLYKSVADLDEGCMSTEAIKQMLLQPINSAEDDCSALKFNIDDTQPTKYFTCAANSNGCYAPDMIASTYKDKYKCQCGRSFRLPIFLKPLPEGFVNGVTTFVITDDLTIKPNCIDYTSFNLFTEFGIKNHSSVKEMVLNVTKEKVLDLLKCSLLSKSTLTDLFLGKKPSLESSRFFSYDGEIVKDIQVILKPVIRKSDNKVLHAQGQQDFANLLLSFLTFPLGGIARIFGGNCSLGSINGLHKSIVDLDENQYLTSSDAKNRLVHPRIAPQLKLSKKILPILQPPVCNYYGCFDSSVKTNKIIHFEIKSGTYVTNLKKMNLSNVMIPGDGYVKGPAMYFATDDLVVAPLTPISALGLLNRLKTPLNDLKEKVITIGIKECLNILKASLTSTSALTNGLARMLTEVKDEK