AlfalfaGEDB | MS.gene055030

M. sativa cultivar XinJiangDaYe / MS.gene055030

KEGG: -
GO: -
PFAM: PF05056.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055030.t1	XP_003622949.1	63.5	496	146	8	5	494	6	472	2.90E-154	555.4

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055030.t1	G7L1B1	63.5	496	146	8	5	494	6	472	2.1e-154	555.4

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene001103	MS.gene055030	PPI
MS.gene001108	MS.gene055030	PPI
MS.gene001109	MS.gene055030	PPI
MS.gene007488	MS.gene055030	PPI
MS.gene009400	MS.gene055030	PPI
MS.gene010675	MS.gene055030	PPI
MS.gene037535	MS.gene055030	PPI
MS.gene037540	MS.gene055030	PPI
MS.gene037545	MS.gene055030	PPI
MS.gene037548	MS.gene055030	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055030.t1	MTR_7g058710	63.306	496	147	8	5	494	6	472	0.0	591
MS.gene055030.t1	MTR_7g066570	62.600	500	156	4	1	494	1	475	0.0	590
MS.gene055030.t1	MTR_2g029400	60.446	493	103	8	1	489	1	405	0.0	526
MS.gene055030.t1	MTR_2g029400	64.179	67	20	1	486	548	339	405	2.64e-16	81.6
MS.gene055030.t1	MTR_7g012680	58.704	494	150	5	1	494	1	440	0.0	525
MS.gene055030.t1	MTR_7g012680	52.055	73	31	1	487	555	370	442	3.20e-11	66.2
MS.gene055030.t1	MTR_7g066680	82.432	296	21	1	230	494	38	333	2.98e-171	488
MS.gene055030.t1	MTR_7g066680	47.368	114	22	3	486	561	231	344	1.61e-16	81.6
MS.gene055030.t1	MTR_7g058700	57.928	473	108	5	26	494	531	916	1.99e-169	504
MS.gene055030.t1	MTR_7g058700	48.515	101	48	1	463	559	822	922	1.17e-17	87.4

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene055030.t1	AT5G01120	33.000	500	302	11	11	496	6	486	1.28e-70	236
MS.gene055030.t1	AT5G01150	31.800	500	284	10	14	492	9	472	3.54e-64	218
MS.gene055030.t1	AT5G01150	24.583	240	153	7	273	498	4	229	9.30e-12	68.2
MS.gene055030.t1	AT5G43240	31.166	523	285	13	11	496	6	490	8.86e-60	207
MS.gene055030.t1	AT5G43240	31.166	523	285	13	11	496	6	490	8.86e-60	207
MS.gene055030.t1	AT5G43240	31.166	523	285	13	11	496	6	490	8.86e-60	207
MS.gene055030.t1	AT3G09140	30.174	517	292	13	11	493	6	487	3.19e-54	191
MS.gene055030.t1	AT3G09140	30.524	534	296	15	11	493	6	515	1.82e-53	190
MS.gene055030.t1	AT5G01130	30.962	478	280	9	14	491	9	436	5.68e-50	179
MS.gene055030.t1	AT5G01130	25.847	236	145	8	271	493	3	221	6.72e-11	65.1

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Find 77 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGACCATCAGTATACA+TGG	0.573482	7.4:-37539206	MS.gene055030:CDS
AAATACGAAGTCAGTTAAAG+GGG	0.611325	7.4:+37539768	None:intergenic
AAATGTTCCTATGTTTGATG+TGG	0.577025	7.4:-37537924	MS.gene055030:CDS
AAGAAACATCTGAAGAGGGT+AGG	0.591438	7.4:-37539684	MS.gene055030:CDS
AAGCTTGAAATCACAAACAT+TGG	0.547176	7.4:-37539960	MS.gene055030:CDS
AATATTGAAGCAGTTCAATT+TGG	0.301162	7.4:-37540368	MS.gene055030:CDS
AATTACGTTGAGAGTTATGG+TGG	0.607698	7.4:-37540507	MS.gene055030:CDS
ACAACTAAGTCATCTGTTAA+TGG	0.328133	7.4:+37537992	None:intergenic
ACGAAGAGAGCGAATCCACC+GGG	0.552296	7.4:+37539330	None:intergenic
ACTGCAGAAATTGGTAAAGT+TGG	0.422218	7.4:+37539391	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATACGAAGTCAGTTAAAG+GGG	+	chr7.4:37538492-37538511	None:intergenic	30.0%
AAATGTTCCTATGTTTGATG+TGG	-	chr7.4:37540333-37540352	MS.gene055030:CDS	30.0%
AAGCTTGAAATCACAAACAT+TGG	-	chr7.4:37538297-37538316	MS.gene055030:intron	30.0%
ACAACTAAGTCATCTGTTAA+TGG	+	chr7.4:37540268-37540287	None:intergenic	30.0%
ACTAGGAAAAACAATACGAA+TGG	+	chr7.4:37540158-37540177	None:intergenic	30.0%
ATCAGAAATGATAAATGTGG+CGG	+	chr7.4:37538226-37538245	None:intergenic	30.0%
ATGATAATAATAGACAGGCA+AGG	+	chr7.4:37538894-37538913	None:intergenic	30.0%
ATTAAAGAATTACTTCGGTC+GGG	-	chr7.4:37539753-37539772	MS.gene055030:CDS	30.0%
ATTCCTAAAAATGCTCAAAC+GGG	+	chr7.4:37538115-37538134	None:intergenic	30.0%
CAAAATTACGTTGAGAGTTA+TGG	-	chr7.4:37537747-37537766	MS.gene055030:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	37537709	37540570	37537709	ID=MS.gene055030
chr7.4	mRNA	37537709	37540570	37537709	ID=MS.gene055030.t1;Parent=MS.gene055030
chr7.4	exon	37539884	37540570	37539884	ID=MS.gene055030.t1.exon1;Parent=MS.gene055030.t1
chr7.4	CDS	37539884	37540570	37539884	ID=cds.MS.gene055030.t1;Parent=MS.gene055030.t1
chr7.4	exon	37539087	37539827	37539087	ID=MS.gene055030.t1.exon2;Parent=MS.gene055030.t1
chr7.4	CDS	37539087	37539827	37539087	ID=cds.MS.gene055030.t1;Parent=MS.gene055030.t1
chr7.4	exon	37538942	37538993	37538942	ID=MS.gene055030.t1.exon3;Parent=MS.gene055030.t1
chr7.4	CDS	37538942	37538993	37538942	ID=cds.MS.gene055030.t1;Parent=MS.gene055030.t1
chr7.4	exon	37537892	37538016	37537892	ID=MS.gene055030.t1.exon4;Parent=MS.gene055030.t1
chr7.4	CDS	37537892	37538016	37537892	ID=cds.MS.gene055030.t1;Parent=MS.gene055030.t1
chr7.4	exon	37537709	37537789	37537709	ID=MS.gene055030.t1.exon5;Parent=MS.gene055030.t1
chr7.4	CDS	37537709	37537789	37537709	ID=cds.MS.gene055030.t1;Parent=MS.gene055030.t1

Gene Sequence

>MS.gene055030

ATGGCTGACGTTGCAACTGAATCTGTTGAACAAAATGACAAAATTACGTTGAGAGTTATGGTGGATAAAGAAAGTAACAAAGTTCTGTATGCTGAAGCAGTGAAGGATTTTGTTGATGTTCTCTTCAGCTTCTTTACCTTGCCCTTAGGGACTATTGCAAGACTCGTTGCTACAGACTCAAATATTGAAGCAGTTCAATTTGGCAGCATTAGCTCACTTTATCAAAGTGTAAAAGATCTTGATCAACAATATTTATGCACAAATACCTGCAAGGAAATGCTGCTGCAGCCAAGAAGCTCTATGGAAGCTTATTGTCAAAAGCTCAAACTGAATATAGACAACACAGAACCTTTGCAGCACTTCGTGTGCGAGAAGTGGGATTGTGTTAGAAAGCAAAGTGGAGCCCGTTTGAGCATTTTTAGGAATCAAAAGTGCAGTTGTGGAAAAGTAATGAACCTAGTAATGTCCCCACCAAAAGAATTTTTGAGTTTAGGAAATGGCTTTGCTAAGGAAACCGCCACATTTATCATTTCTGATGATCTTACTGTGATGCCTAATGTTTTTGGAACAGTTATACCACTACTTCAAAAGCTTGAAATCACAAACATTGGTGCTATTGTTGAAGAATCTGTCGAAATCAGCAAGCAAGAGGCATCCTATTCCTCTCTATATATAACTCTCATATTTGTATATCATTATTTTGTTTAGTTGATTTTTTTCTCATCAAATATTCATTTTTGTAGATAACTGATATTCTCAAGTTGTCATTCGTCTCAAAGACCCCTTTAACTGACTTCGTATTTAAGAAGAAACATTTCTGTGATGAATTTGTCAAGACAAACCAACCAGAGTTTAAGAATAGAGAAGAAACATCTGAAGAGGGTAGGCAGATGTCTGTGAAAGTTTTGCAAAGAAAATCAACCGGAGAGATTTTGTTTGTTGAAGGAGGGGTAGATTTTATTGACTTTATTTTTAGTTTTCTAACCTTCCCCTTGGGGGGAGTGTTGCATATGCTTCAAGGATTCTCTTCTTTAAGCTGCATTGATAATTTATATAAAAGCGTAACTGAGTTGAGTCCAGATATATATTTAATATCACAGGAACTTAAAGATAAACTAACTAAGCCTCCCATTGCAGCACAATTTGAGCTCAGCAATCCAACTTTACCAATTTCTGCAGTTACCTTGCCTGTCTATTATTATCATACTTACTATAATTCCCGGTGGATTCGCTCTCTTCGTATTACATATTATTGTTGTGGTTCTGATGATAGGTGTGTACTTTTGAATTTTGTTGATCCTAAGTATTCTGCTTCAAAATCATCAAGTTGTGGAGAATTTGCAAAAGGACCATCAGTATACATGGTTACAGATGACTTGGTTGTGACTCCAACCTCATCCTTCGATGCTATTTCACATCTAAAGAGTTTAAACGTTCCTTTATCTGATGTAGAGGAAAAAGTGGTTAGAATTGGTCTGAAAGAGGTAATTCACAACTTAAGACTTTTCGCGTTGTTATTGCAATTAATTTTCATTTCCATACATTATTACAGTGCTTTATTTGTTTACATGTTGCAGGGTCTCAGCATTCTTAAGGCTTCATTGACCTCAACTTCTGCTTTGACAAATGGTCTCAACCAATTCTTAACAATAATCATTAAGAAAGCGAAATGACCGATGATTTACCTCTATGAAAAATTTGTTTACAAACATAATTAGACCTGTAGTGTAGTTGATATATCGACTACTATTTCATCAGATATTTAATATATGTTTTATGTAAATTATTTTGAACATCTCATACTTATATTTCCATCTCTCCATAATTGATTTTCTATATTCAACGCACTACGGCGACCTTGATATAAAATAACTCTCTAATACATTTGGTTCTTATAGAATATTGTTTTAGCACCTACCTGATCCTTGAAAGAAAAAACTAACAATATTGTTTATGACATAACCAGCAATCTAATATAAGCCTTGAGTGACAGACTTCATCTTTAGGAAGCAACATGTCCTTGACGAACCAATTTGAGTTTAAGATTAAAGAATTACTTCGGTCGGGGGCAGCCAGATGACTGAAAGTAATGAGAAGAAGATCAACTGAAGAGATTTTGTTCAATGAATCAGGGGTTGGTTATATTGACTTTGTTTTCAGTTTTCTCACTTTCCCCTTGGGAGCAGTGTTACATATGCTTCAAGGATTCTCTTCTTTAAGCTGAATTGATAATTTATACAAAAGTATGACCTGAGTTGAATCCAAATATATATTTAATGTCGCAAGAACTCAAAGATAAACTAAGTAAACCTACCATTGCAGCACAATTGATTTGAGCTCAGCAATCAGACGTTACCCATCCCCAAAGCTAACTTACCTGTCTATTATTGTCATACTTACTTGGATTCACGGTTCGTTAAGTATACTCGCACTCTTAGTACTACACCCATTCGTATTGTTTTTCCTAGTTCTAGTGAAATGCGTGTAACTTTAAATTTGGTTGATCCGAAGTACTCTGCTTCAAGATCATCAAGTTGTGGAGAATTTGTCAAAGGTCCATTAACAGATGACTTAGTTGTGACTCCAATGTCATCCTTCACTGCTATTTCTCATCTAAATAGCTCAAATGTTCCTATGTTTGATGTGGAGGAGAGGGTCTTTAGAATTGGTTTGAATGAGGTAATAATTCACGGCATAAGACATTTATTGTCGTTACTGATTGCAATTAATTTGCATTTCCATACATTATCATAATGAGTTGTTTGTTTACATATGTTGCAGGGTCTCGTTATTCTTAAAGCTTCATTGACCTCAACATCTGCTTTGACAAATGGACTCAAAACACTTCATACCAACCATTAA

Protein sequence

>MS.gene055030.t1

MADVATESVEQNDKITLRVMVDKESNKVLYAEAVKDFVDVLFSFFTLPLGTIARLVATDSNIEAVQFGSISSLYQSVKDLDQQYLCTNTCKEMLLQPRSSMEAYCQKLKLNIDNTEPLQHFVCEKWDCVRKQSGARLSIFRNQKCSCGKVMNLVMSPPKEFLSLGNGFAKETATFIISDDLTVMPNVFGTVIPLLQKLEITNIGAIVEESVEISKQEASYSSLYITLIFITDILKLSFVSKTPLTDFVFKKKHFCDEFVKTNQPEFKNREETSEEGRQMSVKVLQRKSTGEILFVEGGVDFIDFIFSFLTFPLGGVLHMLQGFSSLSCIDNLYKSVTELSPDIYLISQELKDKLTKPPIAAQFELSNPTLPISAVTLPVYYYHTYYNSRWIRSLRITYYCCGSDDRCVLLNFVDPKYSASKSSSCGEFAKGPSVYMVTDDLVVTPTSSFDAISHLKSLNVPLSDVEEKVVRIGLKEGLSILKASLTSTSALTNGPLTDDLVVTPMSSFTAISHLNSSNVPMFDVEERVFRIGLNEGLVILKASLTSTSALTNGLKTLHTNH