AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84601

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84601.t1 MTR_7g066340 70.190 473 73 5 1 405 1 473 0.0 617
MS.gene84601.t1 MTR_7g066350 64.835 364 117 5 1 359 1 358 1.51e-157 456
MS.gene84601.t1 MTR_7g066310 56.034 464 73 8 9 405 4 403 1.36e-153 444
MS.gene84601.t1 MTR_1g041315 63.215 367 115 5 7 356 9 372 2.27e-149 436
MS.gene84601.t1 MTR_7g066570 53.846 429 168 7 3 420 5 414 2.16e-137 408
MS.gene84601.t1 MTR_7g066260 57.382 359 141 6 6 356 9 363 1.29e-129 386
MS.gene84601.t1 MTR_7g066260 26.022 269 148 8 6 261 263 493 4.06e-13 72.0
MS.gene84601.t1 MTR_7g012680 58.263 357 122 5 3 356 5 337 1.62e-127 379
MS.gene84601.t1 MTR_7g066400 55.191 366 122 6 1 356 1 334 9.21e-125 372
MS.gene84601.t1 MTR_7g066400 26.009 223 133 7 11 231 239 431 1.23e-11 67.0
MS.gene84601.t1 MTR_7g066280 51.620 432 70 6 91 405 1 410 2.29e-124 369
MS.gene84601.t1 MTR_7g066290 51.972 431 152 9 6 386 9 434 6.56e-124 369
MS.gene84601.t1 MTR_7g058710 53.168 363 147 7 1 356 1 347 5.99e-116 350
MS.gene84601.t1 MTR_7g066360 54.875 359 139 8 6 356 8 351 2.14e-107 328
MS.gene84601.t1 MTR_7g066580 47.258 383 138 11 18 378 1 341 1.54e-99 307
MS.gene84601.t1 MTR_7g066580 28.968 252 140 9 4 233 207 441 4.35e-14 74.7
MS.gene84601.t1 MTR_2g029400 47.592 353 109 6 6 356 8 286 3.67e-93 289
MS.gene84601.t1 MTR_7g058700 44.028 427 138 10 24 385 531 921 1.62e-91 299
MS.gene84601.t1 MTR_7g066410 42.933 375 178 7 12 356 10 378 2.74e-91 288
MS.gene84601.t1 MTR_7g066410 31.624 234 135 9 12 231 284 506 1.47e-17 85.9
MS.gene84601.t1 MTR_7g066430 45.480 354 176 9 12 355 4 350 1.15e-90 286
MS.gene84601.t1 MTR_7g066430 27.542 236 148 6 9 231 254 479 6.18e-14 74.3
MS.gene84601.t1 MTR_7g063900 43.258 356 185 10 5 356 3 345 1.19e-79 257
MS.gene84601.t1 MTR_7g066480 36.879 423 207 9 11 387 15 423 1.51e-73 239
MS.gene84601.t1 MTR_7g063830 36.598 388 226 9 1 379 1 377 2.83e-73 239
MS.gene84601.t1 MTR_7g063820 37.340 391 213 9 5 379 3 377 3.77e-71 234
MS.gene84601.t1 MTR_7g063890 40.571 350 191 8 11 356 26 362 6.48e-71 234
MS.gene84601.t1 MTR_7g063660 41.261 349 182 10 7 348 4 336 1.21e-70 233
MS.gene84601.t1 MTR_7g063660 27.039 233 138 8 12 230 250 464 9.26e-18 86.3
MS.gene84601.t1 MTR_7g066490 38.278 418 192 12 12 387 16 409 4.65e-70 229
MS.gene84601.t1 MTR_7g062300 37.772 368 199 10 1 356 1 350 5.19e-70 231
MS.gene84601.t1 MTR_1g014060 56.744 215 87 4 21 233 9 219 1.71e-68 224
MS.gene84601.t1 MTR_1g014060 56.923 65 28 0 292 356 210 274 3.20e-15 77.8
MS.gene84601.t1 MTR_7g062280 38.172 372 196 11 5 356 3 360 5.17e-68 226
MS.gene84601.t1 MTR_7g062280 27.803 223 149 6 12 231 266 479 3.50e-16 81.3
MS.gene84601.t1 MTR_7g063880 39.058 361 196 11 5 361 4 344 4.03e-66 221
MS.gene84601.t1 MTR_7g063840 37.940 369 188 13 1 355 1 342 2.84e-64 216
MS.gene84601.t1 MTR_7g063840 26.906 223 149 6 12 231 250 461 4.50e-12 68.6
MS.gene84601.t1 MTR_4g019310 36.043 369 202 9 6 354 2 356 4.09e-63 214
MS.gene84601.t1 MTR_4g019310 32.618 233 134 12 13 234 267 487 1.84e-16 82.4
MS.gene84601.t1 MTR_4g017440 36.193 373 203 9 6 357 8 366 8.16e-63 213
MS.gene84601.t1 MTR_4g017440 28.261 230 138 7 12 226 274 491 3.54e-12 68.9
MS.gene84601.t1 MTR_4g019340 35.215 372 199 9 13 357 39 395 9.58e-61 207
MS.gene84601.t1 MTR_4g019340 27.907 215 140 4 12 226 303 502 5.46e-15 77.8
MS.gene84601.t1 MTR_4g017830 35.925 373 209 13 1 357 1 359 4.89e-58 201
MS.gene84601.t1 MTR_4g017830 25.984 254 148 9 12 238 267 507 4.41e-11 65.5
MS.gene84601.t1 MTR_7g063920 35.475 358 182 7 1 356 1 311 6.06e-58 198
MS.gene84601.t1 MTR_7g063920 28.509 228 135 8 12 231 217 424 3.17e-16 81.3
MS.gene84601.t1 MTR_3g007740 37.838 333 182 8 11 338 8 320 3.20e-57 196
MS.gene84601.t1 MTR_4g017410 36.657 341 178 10 6 320 3 331 3.87e-57 198
MS.gene84601.t1 MTR_4g017610 34.817 382 187 13 15 364 16 367 9.79e-57 196
MS.gene84601.t1 MTR_3g065200 35.714 350 165 11 10 356 1 293 3.13e-54 189
MS.gene84601.t1 MTR_4g017470 32.331 399 205 9 1 379 1 354 1.50e-53 188
MS.gene84601.t1 MTR_7g066680 61.806 144 54 1 214 356 37 180 1.52e-49 173
MS.gene84601.t1 MTR_7g066680 26.389 216 145 6 6 216 80 286 7.49e-11 63.9
MS.gene84601.t1 MTR_7g063670 34.940 332 191 8 13 338 16 328 1.27e-46 168
MS.gene84601.t1 MTR_4g017550 32.143 336 185 10 41 356 20 332 2.28e-38 146
MS.gene84601.t1 MTR_7g062270 38.953 172 102 3 13 183 11 180 6.59e-32 126
MS.gene84601.t1 MTR_2g067310 43.931 173 57 4 23 195 58 190 2.15e-28 113
MS.gene84601.t1 MTR_1g115440 34.400 250 140 8 1 237 1 239 7.28e-28 111
MS.gene84601.t1 MTR_7g063690 30.935 278 123 7 13 289 13 222 2.10e-25 105
MS.gene84601.t1 MTR_8g445860 31.579 247 143 7 4 237 5 238 2.35e-25 104
MS.gene84601.t1 MTR_8g023240 25.000 316 216 6 13 325 38 335 1.61e-24 107
MS.gene84601.t1 MTR_0150s0010 31.395 258 136 7 1 237 1 238 2.06e-22 96.3
MS.gene84601.t1 MTR_7g063720 37.624 101 63 0 256 356 17 117 7.74e-18 83.2
MS.gene84601.t1 MTR_7g063720 29.661 236 127 10 3 231 17 220 8.59e-18 83.2
MS.gene84601.t1 MTR_1g115455 29.508 244 147 9 6 237 3 233 7.91e-18 83.2
MS.gene84601.t1 MTR_4g019240 36.842 114 60 4 3 108 4 113 4.87e-15 73.9
MS.gene84601.t1 MTR_4g019240 31.447 159 91 3 256 396 7 165 3.01e-14 71.6
MS.gene84601.t1 MTR_1g115450 40.000 90 49 1 7 96 2 86 9.34e-15 71.6
MS.gene84601.t1 MTR_1g115470 40.952 105 54 3 12 114 6 104 5.23e-14 74.3
MS.gene84601.t1 MTR_7g063850 27.511 229 133 10 15 231 69 276 7.33e-13 69.7
MS.gene84601.t1 MTR_7g100420 31.624 234 133 10 155 379 83 298 1.03e-12 70.1
MS.gene84601.t1 MTR_1g115435 27.119 236 141 9 7 238 2 210 2.15e-12 67.0
MS.gene84601.t1 MTR_0150s0030 37.363 91 51 2 6 95 2 87 3.11e-12 66.2
MS.gene84601.t1 MTR_7g063510 43.373 83 45 1 419 499 19 101 4.42e-12 62.8
MS.gene84601.t1 MTR_7g066390 33.846 130 47 2 303 393 1 130 7.00e-12 63.9
MS.gene84601.t1 MTR_8g044880 37.113 97 55 2 6 101 2 93 8.29e-12 66.2
MS.gene84601.t1 MTR_8g445910 38.462 91 50 2 6 95 2 87 2.95e-11 64.3
MS.gene84601.t1 MTR_8g445920 40.000 90 47 2 1 90 1 83 2.99e-11 60.8
MS.gene84601.t1 MTR_8g044890 40.000 90 47 2 1 90 1 83 2.99e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84601.t1 AT3G09110 32.812 320 205 5 12 327 9 322 6.52e-51 177
MS.gene84601.t1 AT5G01120 32.277 347 203 8 13 335 10 348 6.17e-45 165
MS.gene84601.t1 AT5G01150 31.180 356 213 8 12 346 9 353 5.66e-43 159
MS.gene84601.t1 AT3G09140 32.102 352 201 10 1 325 1 341 1.02e-42 159
MS.gene84601.t1 AT3G09120 31.329 316 200 7 11 316 5 313 1.08e-41 151
MS.gene84601.t1 AT5G43240 31.792 346 204 11 13 335 10 346 6.87e-40 151
MS.gene84601.t1 AT5G43240 31.792 346 204 11 13 335 10 346 6.87e-40 151
MS.gene84601.t1 AT5G43240 31.792 346 204 11 13 335 10 346 6.87e-40 151
MS.gene84601.t1 AT3G09140 30.108 372 198 10 1 319 1 363 5.86e-39 149
MS.gene84601.t1 AT5G01140 29.938 324 200 6 12 331 9 309 2.20e-37 143
MS.gene84601.t1 AT5G01140 28.755 233 122 9 13 230 241 444 9.58e-13 70.9
MS.gene84601.t1 AT5G01130 31.915 329 206 8 1 325 1 315 3.49e-36 140
MS.gene84601.t1 AT5G37320 26.271 354 217 14 3 327 2 340 3.44e-24 105
MS.gene84601.t1 AT5G43240 31.285 179 111 4 165 335 28 202 1.38e-13 72.8

Find 68 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTCAGTTTCATATTC+TGG 0.191679 7.3:-39228496 None:intergenic
GTCCGACTTTATATTTAAAA+AGG 0.210262 7.3:+39229006 MS.gene84601:CDS
TGAGCACCTGCTGTGTTTCT+TGG 0.223634 7.3:-39228470 None:intergenic
GAGACTTGCGAAATTGAAAA+TGG 0.237935 7.3:+39228560 MS.gene84601:CDS
AAGAAAACATACCTCTTTCT+TGG 0.258951 7.3:-39228819 None:intergenic
TCAAATTGAGCAGAAATCTT+TGG 0.263116 7.3:-39229340 None:intergenic
CAAGGTTACCATTAGAGTTT+TGG 0.279997 7.3:+39228220 MS.gene84601:CDS
TGATCTACTCAAATTGTCTT+TGG 0.290186 7.3:+39228967 MS.gene84601:CDS
AATATTGAAGCACTGATCTT+TGG 0.300432 7.3:+39228362 MS.gene84601:CDS
AACCAATTGGAGGTTAATAT+TGG 0.305540 7.3:+39229058 MS.gene84601:CDS
CTTGGTAATGTTGATATTAA+CGG 0.313085 7.3:-39228801 None:intergenic
GGTACTGTTCAAGTTTCTTC+AGG 0.315807 7.3:+39228582 MS.gene84601:CDS
GATACCTTGTAACGATTATA+AGG 0.318916 7.3:+39229384 MS.gene84601:CDS
AAACTTGTCGTAACAACATT+TGG 0.329105 7.3:-39228725 None:intergenic
AGTTTCCTCACTTTCCCCTT+AGG 0.347120 7.3:+39229190 MS.gene84601:CDS
ATATCATCACTTTAAATTGT+TGG 0.353901 7.3:-39230999 None:intergenic
TCAAAATTTGCTTTGACAAA+CGG 0.362323 7.3:+39229725 MS.gene84601:CDS
AGCTTCTTAACCTTGCGCTT+AGG 0.371477 7.3:+39228308 MS.gene84601:CDS
AACCACCATCAACATAGATT+TGG 0.380923 7.3:-39230918 None:intergenic
GCTTCTTAACCTTGCGCTTA+GGG 0.382002 7.3:+39228309 MS.gene84601:CDS
TTTAGTTCTAAGTAACCAAT+TGG 0.384220 7.3:+39229045 MS.gene84601:CDS
AACGGCCTCAACCAGTTCAT+TGG 0.391379 7.3:+39229743 MS.gene84601:CDS
AAAGGAAGAATCTGATGAAA+TGG 0.399313 7.3:+39229087 MS.gene84601:CDS
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.3:+39228746 MS.gene84601:CDS
GGCAGGAAGTAGATCTGTTC+AGG 0.408889 7.3:+39230198 MS.gene84601:intron
TACAAGGTATCGGTAATATC+TGG 0.416442 7.3:-39229372 None:intergenic
ATCAACCAAATCTATGTTGA+TGG 0.421611 7.3:+39230913 MS.gene84601:CDS
TACCAATATTAACCTCCAAT+TGG 0.431128 7.3:-39229060 None:intergenic
TACTATACTAACCAATGAAC+TGG 0.434085 7.3:-39229754 None:intergenic
CTTGTCCACCAAAACTCTAA+TGG 0.440326 7.3:-39228228 None:intergenic
AATATGCAACACTGCTCCTA+AGG 0.452936 7.3:-39229206 None:intergenic
CACATTGTGTACCAACAATC+TGG 0.462685 7.3:-39230817 None:intergenic
AGCTTACAAAAGAGATTCCT+TGG 0.468772 7.3:-39229231 None:intergenic
CAGAAATAACGTCACTTACA+AGG 0.471169 7.3:+39230861 MS.gene84601:CDS
CTTACCTTATAATCGTTACA+AGG 0.487269 7.3:-39229388 None:intergenic
GGTTAATATTGGTAAAGAAA+AGG 0.492157 7.3:+39229069 MS.gene84601:CDS
TGAGTTCAGACAAGTGTTTG+AGG 0.507323 7.3:+39229287 MS.gene84601:CDS
TATCAACATTACCAAGAAAG+AGG 0.515400 7.3:+39228808 MS.gene84601:CDS
CAAGACCAAGGCCAGATTGT+TGG 0.515955 7.3:+39230806 MS.gene84601:CDS
CATCCAGCAGTATCATCATT+AGG 0.516253 7.3:-39230731 None:intergenic
CAGCCTAATGATGATACTGC+TGG 0.517497 7.3:+39230728 MS.gene84601:intron
GTGTACCAACAATCTGGCCT+TGG 0.521461 7.3:-39230811 None:intergenic
AGTTCTAAGTAACCAATTGG+AGG 0.534683 7.3:+39229048 MS.gene84601:CDS
TCTATTTGCTGAGGCAGAGA+AGG 0.537242 7.3:+39228265 MS.gene84601:CDS
TTGAGCAGAAATCTTTGGAA+TGG 0.537844 7.3:-39229335 None:intergenic
AGACTTGCGAAATTGAAAAT+GGG 0.543696 7.3:+39228561 MS.gene84601:CDS
ATATGCAACACTGCTCCTAA+GGG 0.554427 7.3:-39229205 None:intergenic
TTATAATCGTTACAAGGTAT+CGG 0.556667 7.3:-39229382 None:intergenic
CATTGACTCCAAGCTTCTGA+AGG 0.561296 7.3:-39228754 None:intergenic
AATGATGATACTGCTGGATG+TGG 0.562722 7.3:+39230734 MS.gene84601:CDS
ACTAACCAATGAACTGGTTG+AGG 0.567961 7.3:-39229748 None:intergenic
TGCAATGGTCCCTAAGCGCA+AGG 0.579621 7.3:-39228318 None:intergenic
CTCAGCAAAACAAGTAGACA+AGG 0.581182 7.3:+39228202 MS.gene84601:CDS
ATCAATCCAAGAAACACAGC+AGG 0.592546 7.3:+39228464 MS.gene84601:CDS
TTAAATATAAAGTCGGACAA+AGG 0.594001 7.3:-39229001 None:intergenic
AAATAAAGTTCTATTTGCTG+AGG 0.602370 7.3:+39228256 MS.gene84601:CDS
AGGGACCATTGCAAAACTTG+TGG 0.604088 7.3:+39228328 MS.gene84601:CDS
CTCGTTCTCACAGAGGTAGT+AGG 0.604960 7.3:-39228540 None:intergenic
AACCAAATCTATGTTGATGG+TGG 0.623412 7.3:+39230916 MS.gene84601:CDS
CGCAAGTCTCGTTCTCACAG+AGG 0.626293 7.3:-39228547 None:intergenic
GTTGGCAATCAAGCATATTG+TGG 0.641007 7.3:-39230981 None:intergenic
CTGCTCCTAAGGGGAAAGTG+AGG 0.642220 7.3:-39229195 None:intergenic
GCAGTGTTGCATATTCTCCA+AGG 0.644109 7.3:+39229214 MS.gene84601:CDS
ACAGAGGTAGTAGGACTGCA+AGG 0.646553 7.3:-39228531 None:intergenic
ATGTGTTGAATGTTGCAAGA+AGG 0.665559 7.3:+39230835 MS.gene84601:CDS
AAAGTTGAAGGTCAAGACCA+AGG 0.676584 7.3:+39230794 MS.gene84601:CDS
TATGCAACACTGCTCCTAAG+GGG 0.682165 7.3:-39229204 None:intergenic
TCTATGGTCACAGACATGCA+AGG 0.694458 7.3:+39228433 MS.gene84601:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGTTATAATTATTATGT+AGG - chr7.3:39229801-39229820 None:intergenic 10.0%
!! ATGATAAAAATACATGAATT+TGG - chr7.3:39230454-39230473 None:intergenic 15.0%
!! TAACAATAATTATATAACTG+AGG - chr7.3:39230490-39230509 None:intergenic 15.0%
!!! TTCCTTTTTAAATATAAAGT+CGG - chr7.3:39229011-39229030 None:intergenic 15.0%
!! AAAAAATCAACAAAAGTTGA+AGG + chr7.3:39230782-39230801 MS.gene84601:CDS 20.0%
!! AAACAAGTTATTAGTTAGAA+TGG - chr7.3:39230694-39230713 None:intergenic 20.0%
!! AACAAGTTATTAGTTAGAAT+GGG - chr7.3:39230693-39230712 None:intergenic 20.0%
!! AATACATGAATTTGGTAAAA+AGG - chr7.3:39230446-39230465 None:intergenic 20.0%
!! ATCTTGATGAAAAATATCTA+TGG + chr7.3:39228417-39228436 MS.gene84601:CDS 20.0%
!! TATAATTATTATGTAGGATG+AGG - chr7.3:39229795-39229814 None:intergenic 20.0%
!!! AAAATTCATGATTTTGAGTA+AGG + chr7.3:39228643-39228662 MS.gene84601:CDS 20.0%
!!! ATTTTTGTGTTTGAAATATG+TGG + chr7.3:39230296-39230315 MS.gene84601:intron 20.0%
!!! TCAAAATCATGAATTTTTCT+CGG - chr7.3:39228640-39228659 None:intergenic 20.0%
!!! TTATTGTTATTTATGTGACA+AGG + chr7.3:39230501-39230520 MS.gene84601:intron 20.0%
! AAGATATGAAATACCATCAA+TGG - chr7.3:39229524-39229543 None:intergenic 25.0%
! AGGAATCAAAAATGTATTTG+TGG + chr7.3:39228602-39228621 MS.gene84601:CDS 25.0%
! CAAACACAAAAATAGAAACA+TGG - chr7.3:39230289-39230308 None:intergenic 25.0%
! CAATAATTATATAACTGAGG+TGG - chr7.3:39230487-39230506 None:intergenic 25.0%
! CTAACTAATTCTTCAATATG+TGG + chr7.3:39228930-39228949 MS.gene84601:intron 25.0%
! GGTTAATATTGGTAAAGAAA+AGG + chr7.3:39229069-39229088 MS.gene84601:CDS 25.0%
! GTCCGACTTTATATTTAAAA+AGG + chr7.3:39229006-39229025 MS.gene84601:CDS 25.0%
! TAGAAAAAGAAGAGAAGTAA+AGG + chr7.3:39230077-39230096 MS.gene84601:intron 25.0%
! TCATATCTTGAAAGAATGAA+CGG + chr7.3:39229535-39229554 MS.gene84601:intron 25.0%
! TGAACATGCACATATAATAA+AGG - chr7.3:39230177-39230196 None:intergenic 25.0%
! TTAAATATAAAGTCGGACAA+AGG - chr7.3:39229004-39229023 None:intergenic 25.0%
! TTATAATCGTTACAAGGTAT+CGG - chr7.3:39229385-39229404 None:intergenic 25.0%
! TTATTATATGTGCATGTTCA+TGG + chr7.3:39230177-39230196 MS.gene84601:intron 25.0%
!! AAATAAAGTTCTATTTGCTG+AGG + chr7.3:39228256-39228275 MS.gene84601:CDS 25.0%
!! TCAAAATTTGCTTTGACAAA+CGG + chr7.3:39229725-39229744 MS.gene84601:CDS 25.0%
!! TTTTTCATTGCTCTTAATCT+TGG - chr7.3:39230894-39230913 None:intergenic 25.0%
!!! ATGATTTTGAGTAAGGAAAT+CGG + chr7.3:39228650-39228669 MS.gene84601:CDS 25.0%
!!! CTTGGTAATGTTGATATTAA+CGG - chr7.3:39228804-39228823 None:intergenic 25.0%
!!! TTTAGTTCTAAGTAACCAAT+TGG + chr7.3:39229045-39229064 MS.gene84601:CDS 25.0%
AAACTTGTCGTAACAACATT+TGG - chr7.3:39228728-39228747 None:intergenic 30.0%
AAAGGAAGAATCTGATGAAA+TGG + chr7.3:39229087-39229106 MS.gene84601:CDS 30.0%
AACCAATTGGAGGTTAATAT+TGG + chr7.3:39229058-39229077 MS.gene84601:CDS 30.0%
AAGAAAACATACCTCTTTCT+TGG - chr7.3:39228822-39228841 None:intergenic 30.0%
AATGAATGGTACCCATATAT+GGG + chr7.3:39229978-39229997 MS.gene84601:intron 30.0%
AGACTTGCGAAATTGAAAAT+GGG + chr7.3:39228561-39228580 MS.gene84601:CDS 30.0%
ATATGAACATCCCCATATAT+GGG - chr7.3:39229992-39230011 None:intergenic 30.0%
ATCAACCAAATCTATGTTGA+TGG + chr7.3:39230913-39230932 MS.gene84601:CDS 30.0%
ATGGAAGTTTAATAGATCCA+TGG - chr7.3:39230660-39230679 None:intergenic 30.0%
CAACCACAAGAAATCAAATA+TGG - chr7.3:39229672-39229691 None:intergenic 30.0%
CAATGTTCAGTTTCATATTC+TGG - chr7.3:39228499-39228518 None:intergenic 30.0%
CTAATAAGACATGACAATAG+AGG - chr7.3:39230407-39230426 None:intergenic 30.0%
CTTACCTTATAATCGTTACA+AGG - chr7.3:39229391-39229410 None:intergenic 30.0%
CTTCAATATGTGGTTTGAAT+AGG + chr7.3:39228940-39228959 MS.gene84601:intron 30.0%
GATACCTTGTAACGATTATA+AGG + chr7.3:39229384-39229403 MS.gene84601:CDS 30.0%
TAATGAATGGTACCCATATA+TGG + chr7.3:39229977-39229996 MS.gene84601:intron 30.0%
TACCAATATTAACCTCCAAT+TGG - chr7.3:39229063-39229082 None:intergenic 30.0%
TACCATTCATTACATTTCCA+TGG - chr7.3:39229969-39229988 None:intergenic 30.0%
TACTATACTAACCAATGAAC+TGG - chr7.3:39229757-39229776 None:intergenic 30.0%
TACTTCTTGAGAAAGACTAA+GGG + chr7.3:39230372-39230391 MS.gene84601:intron 30.0%
TAGTACTACACATAACAAGT+CGG - chr7.3:39229941-39229960 None:intergenic 30.0%
TATCAACATTACCAAGAAAG+AGG + chr7.3:39228808-39228827 MS.gene84601:CDS 30.0%
TATGAAATACCATCAATGGA+TGG - chr7.3:39229520-39229539 None:intergenic 30.0%
TCAAATTGAGCAGAAATCTT+TGG - chr7.3:39229343-39229362 None:intergenic 30.0%
TGATCTACTCAAATTGTCTT+TGG + chr7.3:39228967-39228986 MS.gene84601:CDS 30.0%
TTACTTCTTGAGAAAGACTA+AGG + chr7.3:39230371-39230390 MS.gene84601:intron 30.0%
TTCCATGGAAATGTAATGAA+TGG + chr7.3:39229964-39229983 MS.gene84601:intron 30.0%
! GTAACAACTGATTCAATATC+TGG - chr7.3:39230612-39230631 None:intergenic 30.0%
! GTTTGTCAAAGCAAATTTTG+AGG - chr7.3:39229726-39229745 None:intergenic 30.0%
! TCACCATATTTGATTTCTTG+TGG + chr7.3:39229666-39229685 MS.gene84601:intron 30.0%
! TGTGTAGTACTAATTTTCCA+TGG + chr7.3:39229949-39229968 MS.gene84601:intron 30.0%
! TTCTACCTTTTGCATCTTTA+GGG - chr7.3:39230248-39230267 None:intergenic 30.0%
! TTTCTACCTTTTGCATCTTT+AGG - chr7.3:39230249-39230268 None:intergenic 30.0%
!! AATATTGAAGCACTGATCTT+TGG + chr7.3:39228362-39228381 MS.gene84601:CDS 30.0%
!!! GTTGATTTTTTGTTGTCTGA+AGG - chr7.3:39230773-39230792 None:intergenic 30.0%
AACCACCATCAACATAGATT+TGG - chr7.3:39230921-39230940 None:intergenic 35.0%
ACTTAATGATGTGGAGGAAA+TGG + chr7.3:39229561-39229580 MS.gene84601:intron 35.0%
ACTTCTTGAGAAAGACTAAG+GGG + chr7.3:39230373-39230392 MS.gene84601:intron 35.0%
AGCTTACAAAAGAGATTCCT+TGG - chr7.3:39229234-39229253 None:intergenic 35.0%
AGGAAGAAAGATTGAACGAA+AGG + chr7.3:39230097-39230116 MS.gene84601:intron 35.0%
ATCAGTTGTTACTGAATGAG+AGG + chr7.3:39230620-39230639 MS.gene84601:intron 35.0%
ATGAATGGTACCCATATATG+GGG + chr7.3:39229979-39229998 MS.gene84601:intron 35.0%
ATGTGTTGAATGTTGCAAGA+AGG + chr7.3:39230835-39230854 MS.gene84601:CDS 35.0%
ATTTCCTCCACATCATTAAG+TGG - chr7.3:39229562-39229581 None:intergenic 35.0%
CAGAAATAACGTCACTTACA+AGG + chr7.3:39230861-39230880 MS.gene84601:CDS 35.0%
CATATGAACATCCCCATATA+TGG - chr7.3:39229993-39230012 None:intergenic 35.0%
CATATGATCTTAGGGTAATG+AGG + chr7.3:39230007-39230026 MS.gene84601:intron 35.0%
GAGACTTGCGAAATTGAAAA+TGG + chr7.3:39228560-39228579 MS.gene84601:CDS 35.0%
GAGGAAATGGTCGTTAATAT+TGG + chr7.3:39229574-39229593 MS.gene84601:intron 35.0%
GGGATGTTCATATGATCTTA+GGG + chr7.3:39229999-39230018 MS.gene84601:intron 35.0%
TAGCATATCCTCCAGAAATA+GGG - chr7.3:39229447-39229466 None:intergenic 35.0%
TAGTTAGAATGGGAGAATGA+GGG - chr7.3:39230683-39230702 None:intergenic 35.0%
TCAGTTGTTACTGAATGAGA+GGG + chr7.3:39230621-39230640 MS.gene84601:intron 35.0%
TCTGTCACCATAAACGTTAA+TGG - chr7.3:39229475-39229494 None:intergenic 35.0%
TTAAATCTCCTTCAGAAGCT+TGG + chr7.3:39228746-39228765 MS.gene84601:CDS 35.0%
TTAGTTAGAATGGGAGAATG+AGG - chr7.3:39230684-39230703 None:intergenic 35.0%
TTTCCTCCACATCATTAAGT+GGG - chr7.3:39229561-39229580 None:intergenic 35.0%
! AACCAAATCTATGTTGATGG+TGG + chr7.3:39230916-39230935 MS.gene84601:CDS 35.0%
! ATTAGCCACAAGTTTTGCAA+TGG - chr7.3:39228336-39228355 None:intergenic 35.0%
! ATTTGATTTCTTGTGGTTGC+AGG + chr7.3:39229673-39229692 MS.gene84601:intron 35.0%
! CAAGGTTACCATTAGAGTTT+TGG + chr7.3:39228220-39228239 MS.gene84601:CDS 35.0%
! TAGAGCACCATTAACGTTTA+TGG + chr7.3:39229465-39229484 MS.gene84601:intron 35.0%
! TCTACCTTTTGCATCTTTAG+GGG - chr7.3:39230247-39230266 None:intergenic 35.0%
! TTGAGCAGAAATCTTTGGAA+TGG - chr7.3:39229338-39229357 None:intergenic 35.0%
! TTTGATTTCTTGTGGTTGCA+GGG + chr7.3:39229674-39229693 MS.gene84601:intron 35.0%
!! AGTTCTAAGTAACCAATTGG+AGG + chr7.3:39229048-39229067 MS.gene84601:CDS 35.0%
!! TACAAGGTATCGGTAATATC+TGG - chr7.3:39229375-39229394 None:intergenic 35.0%
!!! ATGTAGGATGAGGTTTTGTT+TGG - chr7.3:39229785-39229804 None:intergenic 35.0%
AAAGTTGAAGGTCAAGACCA+AGG + chr7.3:39230794-39230813 MS.gene84601:CDS 40.0%
AATATGCAACACTGCTCCTA+AGG - chr7.3:39229209-39229228 None:intergenic 40.0%
AATGATGATACTGCTGGATG+TGG + chr7.3:39230734-39230753 MS.gene84601:CDS 40.0%
ACTAACCAATGAACTGGTTG+AGG - chr7.3:39229751-39229770 None:intergenic 40.0%
AGCATATCCTCCAGAAATAG+GGG - chr7.3:39229446-39229465 None:intergenic 40.0%
ATACCATCAATGGATGGCAT+TGG - chr7.3:39229514-39229533 None:intergenic 40.0%
ATATGCAACACTGCTCCTAA+GGG - chr7.3:39229208-39229227 None:intergenic 40.0%
ATCAATCCAAGAAACACAGC+AGG + chr7.3:39228464-39228483 MS.gene84601:CDS 40.0%
CACATTGTGTACCAACAATC+TGG - chr7.3:39230820-39230839 None:intergenic 40.0%
CATCCAGCAGTATCATCATT+AGG - chr7.3:39230734-39230753 None:intergenic 40.0%
CTAGCATATCCTCCAGAAAT+AGG - chr7.3:39229448-39229467 None:intergenic 40.0%
CTCAGCAAAACAAGTAGACA+AGG + chr7.3:39228202-39228221 MS.gene84601:CDS 40.0%
CTTGTCCACCAAAACTCTAA+TGG - chr7.3:39228231-39228250 None:intergenic 40.0%
GATCCTAAATCCCCTATTTC+TGG + chr7.3:39229433-39229452 MS.gene84601:intron 40.0%
GGGGATGTTCATATGATCTT+AGG + chr7.3:39229998-39230017 MS.gene84601:intron 40.0%
GTAACCACCTCTTATGTGTT+CGG + chr7.3:39229909-39229928 MS.gene84601:intron 40.0%
GTTACTACCGAACACATAAG+AGG - chr7.3:39229919-39229938 None:intergenic 40.0%
GTTGGCAATCAAGCATATTG+TGG - chr7.3:39230984-39231003 None:intergenic 40.0%
TATATGTGCATGTTCATGGC+AGG + chr7.3:39230181-39230200 MS.gene84601:intron 40.0%
TGAGTTCAGACAAGTGTTTG+AGG + chr7.3:39229287-39229306 MS.gene84601:CDS 40.0%
! CTACCTTTTGCATCTTTAGG+GGG - chr7.3:39230246-39230265 None:intergenic 40.0%
! GGTACTGTTCAAGTTTCTTC+AGG + chr7.3:39228582-39228601 MS.gene84601:CDS 40.0%
!! GGTTACCATTAGAGTTTTGG+TGG + chr7.3:39228223-39228242 MS.gene84601:CDS 40.0%
!!! CTTGTCTACTTGTTTTGCTG+AGG - chr7.3:39228204-39228223 None:intergenic 40.0%
AATAGATCCATGGTCACCCA+TGG - chr7.3:39230650-39230669 None:intergenic 45.0%
ACTACCGAACACATAAGAGG+TGG - chr7.3:39229916-39229935 None:intergenic 45.0%
ACTCCAATGCCATCCATTGA+TGG + chr7.3:39229508-39229527 MS.gene84601:intron 45.0%
AGCTTCTTAACCTTGCGCTT+AGG + chr7.3:39228308-39228327 MS.gene84601:CDS 45.0%
AGGGACCATTGCAAAACTTG+TGG + chr7.3:39228328-39228347 MS.gene84601:CDS 45.0%
AGTTTCCTCACTTTCCCCTT+AGG + chr7.3:39229190-39229209 MS.gene84601:CDS 45.0%
ATTGGCCAGAAGGAGGTAAA+AGG + chr7.3:39229592-39229611 MS.gene84601:intron 45.0%
CAGCCTAATGATGATACTGC+TGG + chr7.3:39230728-39230747 MS.gene84601:intron 45.0%
CCTCCAGAAATAGGGGATTT+AGG - chr7.3:39229439-39229458 None:intergenic 45.0%
CGTTAATATTGGCCAGAAGG+AGG + chr7.3:39229585-39229604 MS.gene84601:intron 45.0%
GCAGTGTTGCATATTCTCCA+AGG + chr7.3:39229214-39229233 MS.gene84601:CDS 45.0%
GCTTCTTAACCTTGCGCTTA+GGG + chr7.3:39228309-39228328 MS.gene84601:CDS 45.0%
GGTCGTTAATATTGGCCAGA+AGG + chr7.3:39229582-39229601 MS.gene84601:intron 45.0%
GTTTATGGTGACAGACCAGT+TGG + chr7.3:39229480-39229499 MS.gene84601:intron 45.0%
TAGAATGGGAGAATGAGGGA+TGG - chr7.3:39230679-39230698 None:intergenic 45.0%
TAGCCCCCTAAAGATGCAAA+AGG + chr7.3:39230240-39230259 MS.gene84601:CDS 45.0%
TATGCAACACTGCTCCTAAG+GGG - chr7.3:39229207-39229226 None:intergenic 45.0%
TCTATGGTCACAGACATGCA+AGG + chr7.3:39228433-39228452 MS.gene84601:CDS 45.0%
TTGGCCAGAAGGAGGTAAAA+GGG + chr7.3:39229593-39229612 MS.gene84601:intron 45.0%
! AGATTGAACGAAAGGTGCGA+AGG + chr7.3:39230105-39230124 MS.gene84601:intron 45.0%
! TCTATTTGCTGAGGCAGAGA+AGG + chr7.3:39228265-39228284 MS.gene84601:CDS 45.0%
!! CATTGACTCCAAGCTTCTGA+AGG - chr7.3:39228757-39228776 None:intergenic 45.0%
!! CCTAAATCCCCTATTTCTGG+AGG + chr7.3:39229436-39229455 MS.gene84601:intron 45.0%
AACGGCCTCAACCAGTTCAT+TGG + chr7.3:39229743-39229762 MS.gene84601:CDS 50.0%
ACAGAGGTAGTAGGACTGCA+AGG - chr7.3:39228534-39228553 None:intergenic 50.0%
ACTGAATGAGAGGGAAGCCA+TGG + chr7.3:39230630-39230649 MS.gene84601:intron 50.0%
CAAGACCAAGGCCAGATTGT+TGG + chr7.3:39230806-39230825 MS.gene84601:CDS 50.0%
CTCGTTCTCACAGAGGTAGT+AGG - chr7.3:39228543-39228562 None:intergenic 50.0%
CTGAATGAGAGGGAAGCCAT+GGG + chr7.3:39230631-39230650 MS.gene84601:intron 50.0%
GAACGGCCCACTTAATGATG+TGG + chr7.3:39229552-39229571 MS.gene84601:intron 50.0%
GCATTGGAGTCACAACCAAC+TGG - chr7.3:39229498-39229517 None:intergenic 50.0%
GGCAGGAAGTAGATCTGTTC+AGG + chr7.3:39230198-39230217 MS.gene84601:intron 50.0%
GTGTACCAACAATCTGGCCT+TGG - chr7.3:39230814-39230833 None:intergenic 50.0%
TGAGCACCTGCTGTGTTTCT+TGG - chr7.3:39228473-39228492 None:intergenic 50.0%
! CAGTCCCTTTTACCTCCTTC+TGG - chr7.3:39229600-39229619 None:intergenic 50.0%
CGCAAGTCTCGTTCTCACAG+AGG - chr7.3:39228550-39228569 None:intergenic 55.0%
CGGCCCACTTAATGATGTGG+AGG + chr7.3:39229555-39229574 MS.gene84601:intron 55.0%
CTGCTCCTAAGGGGAAAGTG+AGG - chr7.3:39229198-39229217 None:intergenic 55.0%
TGCAATGGTCCCTAAGCGCA+AGG - chr7.3:39228321-39228340 None:intergenic 55.0%
AGGGAAGCCATGGGTGACCA+TGG + chr7.3:39230640-39230659 MS.gene84601:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 39228188 39231015 39228188 ID=MS.gene84601
chr7.3 mRNA 39228188 39231015 39228188 ID=MS.gene84601.t1;Parent=MS.gene84601
chr7.3 exon 39228188 39228829 39228188 ID=MS.gene84601.t1.exon1;Parent=MS.gene84601.t1
chr7.3 CDS 39228188 39228829 39228188 ID=cds.MS.gene84601.t1;Parent=MS.gene84601.t1
chr7.3 exon 39228962 39229405 39228962 ID=MS.gene84601.t1.exon2;Parent=MS.gene84601.t1
chr7.3 CDS 39228962 39229405 39228962 ID=cds.MS.gene84601.t1;Parent=MS.gene84601.t1
chr7.3 exon 39229695 39229764 39229695 ID=MS.gene84601.t1.exon3;Parent=MS.gene84601.t1
chr7.3 CDS 39229695 39229764 39229695 ID=cds.MS.gene84601.t1;Parent=MS.gene84601.t1
chr7.3 exon 39230203 39230261 39230203 ID=MS.gene84601.t1.exon4;Parent=MS.gene84601.t1
chr7.3 CDS 39230203 39230261 39230203 ID=cds.MS.gene84601.t1;Parent=MS.gene84601.t1
chr7.3 exon 39230731 39231015 39230731 ID=MS.gene84601.t1.exon5;Parent=MS.gene84601.t1
chr7.3 CDS 39230731 39231015 39230731 ID=cds.MS.gene84601.t1;Parent=MS.gene84601.t1
Gene Sequence

>MS.gene84601

ATGGCTGAAAATACCTCAGCAAAACAAGTAGACAAGGTTACCATTAGAGTTTTGGTGGACAAGAAGAAAAATAAAGTTCTATTTGCTGAGGCAGAGAAGGATTTTGTTGATGTTCTTTTGAGCTTCTTAACCTTGCGCTTAGGGACCATTGCAAAACTTGTGGCTAATGACTCAAATATTGAAGCACTGATCTTTGGCAGTATTAGTTCACTGTATCAAAGTGTGTCAGATCTTGATGAAAAATATCTATGGTCACAGACATGCAAGGAAATGCTTATCAATCCAAGAAACACAGCAGGTGCTCATTGCCAGAATATGAAACTGAACATTGACAATACTGATACCTTGCAGTCCTACTACCTCTGTGAGAACGAGACTTGCGAAATTGAAAATGGGTACTGTTCAAGTTTCTTCAGGAATCAAAAATGTATTTGTGGAAAGCTGTTGATCCGAGAAAAATTCATGATTTTGAGTAAGGAAATCGGTTTTGTTAATGAAACGTCGACGTTTATTGTATCTGATGATCTTTATGTTATGCCAAATGTTGTTACGACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATGACATTGATGCTATTGATAAACAAACCGTTAATATCAACATTACCAAGAAAGAGGTATGTTTTCTTATTATGTGTTTGTCTGACATATTTGTTGTTGATTATAATAATAATTATTATTATTATTGTAGTTGTTGTTGTTGTTGATGTTGTTTCTCTAACTAATTCTTCAATATGTGGTTTGAATAGGTAGTTGATCTACTCAAATTGTCTTTGGTCTCAAAAACTCCTTTGTCCGACTTTATATTTAAAAAGGAACAATTTGTTGAAAATTTAGTTCTAAGTAACCAATTGGAGGTTAATATTGGTAAAGAAAAGGAAGAATCTGATGAAATGGTTGTGAAAGTACTGAGAAGAAAATCAAATGAACAGATTTTGTTTGTTGAAGCAGATGATGATTTTGCTGATTTCGTTTTTAGTTTCCTCACTTTCCCCTTAGGAGCAGTGTTGCATATTCTCCAAGGAATCTCTTTTGTAAGCTGCATTGACAATTTATATAAGAGTGTGACTGAATTGAGTTCAGACAAGTGTTTGAGGTCACAGCATTTCAAAGACATGCTTACCATTCCAAAGATTTCTGCTCAATTTGAACTCACGAACCAGATATTACCGATACCTTGTAACGATTATAAGGTAAGAAATATGTCAGTTAAATTTGTTGATCCTAAATCCCCTATTTCTGGAGGATATGCTAGAGCACCATTAACGTTTATGGTGACAGACCAGTTGGTTGTGACTCCAATGCCATCCATTGATGGTATTTCATATCTTGAAAGAATGAACGGCCCACTTAATGATGTGGAGGAAATGGTCGTTAATATTGGCCAGAAGGAGGTAAAAGGGACTGTGTTAGTCTTTCGTTTTAATATTTCTTGAATTAGATTCATAACAACTCACCATATTTGATTTCTTGTGGTTGCAGGGTCTCAGCATACTCAGAGCTTCATTGACCTCAAAATTTGCTTTGACAAACGGCCTCAACCAGTTCATTGGTTAGTATAGTATTAAACCAAACAAAACCTCATCCTACATAATAATTATAACAAAAACGATATTGAAGTTCATCGAGAAATATCATCAAAAATAGTCACGTCGAACATGTCGCATGAACTTTTTTTAATTGAGCATATTTACTAGTAACCACCTCTTATGTGTTCGGTAGTAACCGACTTGTTATGTGTAGTACTAATTTTCCATGGAAATGTAATGAATGGTACCCATATATGGGGATGTTCATATGATCTTAGGGTAATGAGGAGTAATGACAGTTAATGTTGAGAAAATTGAGTAATTAAAAATGAACATAGAAAAAGAAGAGAAGTAAAGGAAGAAAGATTGAACGAAAGGTGCGAAGGAAAGAGAGTAAGAGTCATAAATAATTTTGAATAAGTACTAACTACTCCTTTATTATATGTGCATGTTCATGGCAGGAAGTAGATCTGTTCAGGCTAATTTGTCATCTAATGCTAGCCCCCTAAAGATGCAAAAGGTAGAAAAATGAAGCTTGTTATAACCATGTTTCTATTTTTGTGTTTGAAATATGTGGTTTTGTTTAAGTGATTTGAATGATCACAGTTTATTTTGTATTCTGTCATGATTTACTTCTTGAGAAAGACTAAGGGGAGTTTGTTCCTCTATTGTCATGTCTTATTAGTGTTTCGTGTTGTTTTCCTTTTTACCAAATTCATGTATTTTTATCATATATATTTTGCCACCTCAGTTATATAATTATTGTTATTTATGTGACAAGGCTAAAGATATTATCGATCAATAGAAAAGCACTTGACAAAAGTCGATGCAATTTAAATTACTTTACTTTTGTAAAATGTCGTTCTACCAGATATTGAATCAGTTGTTACTGAATGAGAGGGAAGCCATGGGTGACCATGGATCTATTAAACTTCCATCCCTCATTCTCCCATTCTAACTAATAACTTGTTTATTACATCTGTGTTCAGCCTAATGATGATACTGCTGGATGTGGCTTCTTTAGTTGTCCTTCAGACAACAAAAAATCAACAAAAGTTGAAGGTCAAGACCAAGGCCAGATTGTTGGTACACAATGTGTTGAATGTTGCAAGAAGGATACAGAAATAACGTCACTTACAAGGAAGTTAACCAAGATTAAGAGCAATGAAAAATCAACCAAATCTATGTTGATGGTGGTTATTGTTATTTGTTTGTTCTTAGCTATGATATGTTTCATCACCACAATATGCTTGATTGCCAACAATTTAAAGTGA
Protein sequence

>MS.gene84601.t1

MAENTSAKQVDKVTIRVLVDKKKNKVLFAEAEKDFVDVLLSFLTLRLGTIAKLVANDSNIEALIFGSISSLYQSVSDLDEKYLWSQTCKEMLINPRNTAGAHCQNMKLNIDNTDTLQSYYLCENETCEIENGYCSSFFRNQKCICGKLLIREKFMILSKEIGFVNETSTFIVSDDLYVMPNVVTTSLNLLQKLGVNDIDAIDKQTVNINITKKEVVDLLKLSLVSKTPLSDFIFKKEQFVENLVLSNQLEVNIGKEKEESDEMVVKVLRRKSNEQILFVEADDDFADFVFSFLTFPLGAVLHILQGISFVSCIDNLYKSVTELSSDKCLRSQHFKDMLTIPKISAQFELTNQILPIPCNDYKGLSILRASLTSKFALTNGLNQFIGSRSVQANLSSNASPLKMQKPNDDTAGCGFFSCPSDNKKSTKVEGQDQGQIVGTQCVECCKKDTEITSLTRKLTKIKSNEKSTKSMLMVVIVICLFLAMICFITTICLIANNLK