AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055067

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055067.t1 MTR_7g066480 89.070 430 35 2 1 418 1 430 0.0 763
MS.gene055067.t1 MTR_7g066490 81.473 421 70 4 1 418 1 416 0.0 669
MS.gene055067.t1 MTR_7g066260 41.758 455 201 12 16 411 15 464 1.13e-89 280
MS.gene055067.t1 MTR_7g066340 40.265 452 206 11 16 411 12 455 3.46e-88 276
MS.gene055067.t1 MTR_7g012680 40.625 448 200 9 16 411 14 447 2.33e-85 268
MS.gene055067.t1 MTR_7g066350 40.583 446 202 11 16 406 9 446 8.24e-84 264
MS.gene055067.t1 MTR_7g066410 44.186 344 153 5 16 320 10 353 2.72e-83 264
MS.gene055067.t1 MTR_7g066410 63.855 83 30 0 328 410 431 513 8.06e-24 103
MS.gene055067.t1 MTR_7g062300 35.957 470 211 11 16 406 12 470 9.02e-82 259
MS.gene055067.t1 MTR_7g066290 39.080 435 220 11 11 410 10 434 4.12e-81 256
MS.gene055067.t1 MTR_7g066360 39.593 442 215 10 17 411 15 451 9.21e-80 254
MS.gene055067.t1 MTR_7g062280 36.680 488 205 12 16 410 10 486 1.47e-79 254
MS.gene055067.t1 MTR_3g007740 39.083 458 203 14 11 410 4 443 5.29e-77 246
MS.gene055067.t1 MTR_7g063880 37.214 481 200 11 16 416 11 469 1.60e-76 245
MS.gene055067.t1 MTR_7g066430 44.345 336 166 7 14 330 2 335 3.77e-76 245
MS.gene055067.t1 MTR_7g066430 61.446 83 32 0 335 417 411 493 2.66e-22 99.4
MS.gene055067.t1 MTR_1g041315 36.530 438 218 8 16 393 14 451 2.73e-74 240
MS.gene055067.t1 MTR_7g066400 36.947 452 195 10 15 405 11 433 1.96e-73 237
MS.gene055067.t1 MTR_7g066310 36.916 428 189 10 16 411 7 385 3.19e-73 235
MS.gene055067.t1 MTR_7g063920 36.069 463 186 10 16 410 11 431 4.81e-73 235
MS.gene055067.t1 MTR_7g066570 44.164 317 161 4 17 321 15 327 2.80e-72 237
MS.gene055067.t1 MTR_7g066570 59.722 72 29 0 340 411 411 482 8.27e-18 85.9
MS.gene055067.t1 MTR_7g063670 36.596 470 215 11 4 410 3 452 1.28e-71 232
MS.gene055067.t1 MTR_7g058700 38.061 423 181 8 28 405 531 917 1.66e-71 242
MS.gene055067.t1 MTR_7g063660 35.158 475 217 12 16 410 9 472 2.52e-70 229
MS.gene055067.t1 MTR_7g063830 37.802 455 212 14 11 410 1 439 3.83e-69 225
MS.gene055067.t1 MTR_7g063840 35.957 470 213 10 17 410 11 468 2.68e-68 224
MS.gene055067.t1 MTR_7g058710 33.737 495 209 12 16 415 12 482 7.66e-65 215
MS.gene055067.t1 MTR_1g014060 35.535 439 166 8 27 411 11 386 1.39e-64 212
MS.gene055067.t1 MTR_7g063900 40.469 341 175 6 12 333 5 336 9.07e-64 213
MS.gene055067.t1 MTR_7g063890 40.390 359 164 11 12 339 21 360 1.12e-60 205
MS.gene055067.t1 MTR_7g066580 40.881 318 154 8 22 330 1 293 5.80e-58 196
MS.gene055067.t1 MTR_7g066580 54.795 73 29 1 340 412 376 444 3.60e-14 74.3
MS.gene055067.t1 MTR_7g063820 41.049 324 162 9 17 321 11 324 2.89e-56 192
MS.gene055067.t1 MTR_7g063820 47.945 73 37 1 339 410 407 479 2.80e-11 65.5
MS.gene055067.t1 MTR_4g019310 32.797 497 223 14 19 415 11 496 9.85e-52 181
MS.gene055067.t1 MTR_7g066280 30.340 412 172 13 95 411 1 392 3.57e-40 148
MS.gene055067.t1 MTR_4g019340 31.524 479 214 15 17 397 39 501 1.83e-39 148
MS.gene055067.t1 MTR_4g017410 28.778 483 254 11 14 410 7 485 5.04e-39 147
MS.gene055067.t1 MTR_4g017610 28.125 480 232 14 19 405 16 475 8.01e-37 140
MS.gene055067.t1 MTR_2g029400 32.390 318 134 7 16 321 14 262 3.37e-35 134
MS.gene055067.t1 MTR_2g029400 26.036 169 108 3 252 403 15 183 3.83e-12 67.8
MS.gene055067.t1 MTR_2g029400 53.226 62 29 0 337 398 343 404 3.42e-11 65.1
MS.gene055067.t1 MTR_7g063720 39.500 200 72 3 254 406 26 223 6.59e-35 129
MS.gene055067.t1 MTR_3g065200 35.052 291 153 7 15 300 2 261 1.16e-32 128
MS.gene055067.t1 MTR_7g062270 41.667 168 92 2 17 178 11 178 1.61e-32 127
MS.gene055067.t1 MTR_4g017470 31.765 340 173 7 17 333 13 316 1.25e-31 126
MS.gene055067.t1 MTR_4g017830 32.687 361 194 13 17 342 13 359 1.35e-31 126
MS.gene055067.t1 MTR_4g017830 38.614 101 51 1 309 409 412 501 1.83e-11 66.2
MS.gene055067.t1 MTR_4g017440 30.601 366 187 10 14 333 12 356 4.39e-28 116
MS.gene055067.t1 MTR_7g066680 31.392 309 111 8 204 418 40 341 3.80e-26 108
MS.gene055067.t1 MTR_7g066390 48.413 126 59 2 292 412 1 125 4.56e-24 97.8
MS.gene055067.t1 MTR_8g023240 27.673 318 186 11 17 312 38 333 3.62e-22 99.4
MS.gene055067.t1 MTR_7g063690 30.996 271 117 9 17 278 13 222 3.62e-21 92.4
MS.gene055067.t1 MTR_4g017550 29.231 325 173 11 30 314 3 310 6.35e-21 95.1
MS.gene055067.t1 MTR_8g445860 32.377 244 130 10 7 224 4 238 6.44e-19 85.9
MS.gene055067.t1 MTR_4g019330 38.012 171 90 4 246 405 13 178 1.24e-16 78.2
MS.gene055067.t1 MTR_1g115440 31.381 239 122 10 16 223 11 238 1.42e-15 76.3
MS.gene055067.t1 MTR_2g067310 36.364 154 63 5 27 179 58 177 6.33e-14 71.6
MS.gene055067.t1 MTR_7g063850 40.449 89 53 0 330 418 203 291 1.74e-13 70.9
MS.gene055067.t1 MTR_7g063850 51.471 68 28 1 254 321 69 131 7.84e-12 66.2
MS.gene055067.t1 MTR_7g063760 44.444 72 39 1 345 415 2 73 2.42e-13 65.5
MS.gene055067.t1 MTR_1g115450 44.318 88 44 1 12 99 3 85 3.87e-13 67.0
MS.gene055067.t1 MTR_0150s0010 29.167 240 134 7 12 223 6 237 1.06e-12 67.8
MS.gene055067.t1 MTR_4g019240 29.825 171 79 3 251 409 13 154 2.73e-12 65.5
MS.gene055067.t1 MTR_0150s0030 41.379 87 45 2 14 99 6 87 8.72e-12 64.7
MS.gene055067.t1 MTR_1g115455 40.909 88 47 1 12 99 5 87 2.32e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055067.t1 AT3G09140 31.919 495 240 13 14 414 7 498 3.99e-51 179
MS.gene055067.t1 AT3G09140 30.962 520 240 15 14 414 7 526 1.22e-49 176
MS.gene055067.t1 AT5G01120 30.579 484 233 13 17 405 10 485 2.54e-45 164
MS.gene055067.t1 AT5G01130 30.152 461 242 12 16 415 9 450 1.72e-44 160
MS.gene055067.t1 AT5G01140 27.101 476 240 9 18 415 11 457 9.53e-40 148
MS.gene055067.t1 AT3G09110 31.847 314 197 5 18 316 11 322 7.66e-39 143
MS.gene055067.t1 AT5G37320 30.228 483 240 18 15 410 8 480 1.56e-37 142
MS.gene055067.t1 AT5G43240 32.507 363 205 11 17 346 10 365 6.17e-34 133
MS.gene055067.t1 AT5G43240 32.507 363 205 11 17 346 10 365 6.17e-34 133
MS.gene055067.t1 AT5G43240 32.507 363 205 11 17 346 10 365 6.17e-34 133
MS.gene055067.t1 AT3G09120 30.864 324 182 8 12 305 2 313 4.22e-33 127
MS.gene055067.t1 AT5G01150 30.462 325 191 7 18 315 11 327 4.40e-32 127

Find 65 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGTTTCTGTGAAAATTT+TGG 0.216022 7.4:-38001505 MS.gene055067:CDS
TATTGTTCCATCAAATTAAT+TGG 0.226939 7.4:+38001255 None:intergenic
TTGGATTTAAAATATCTTTC+AGG 0.240482 7.4:+38000170 None:intergenic
CAGTAGCAGCTTCGCTTCTT+AGG 0.241207 7.4:+38001150 None:intergenic
CTTAGACAATAAATCTGATT+TGG 0.246131 7.4:+38000151 None:intergenic
GAGAATTCCTCTCTCTGATT+TGG 0.271322 7.4:-38000006 MS.gene055067:CDS
ATTCAAGAGCATGGTTGATT+TGG 0.281674 7.4:-38000195 MS.gene055067:CDS
TGAGAAATTTGAGAATTATC+AGG 0.305949 7.4:+38001021 None:intergenic
TAAGAAAATTCTGTATGCTT+TGG 0.306163 7.4:-38000324 MS.gene055067:CDS
AAGAAAATTCTGTATGCTTT+GGG 0.312199 7.4:-38000323 MS.gene055067:CDS
AATGTATTGGATTTAGATTT+TGG 0.319002 7.4:-38000410 MS.gene055067:CDS
GGTTCGACCAATTAATTTGA+TGG 0.328737 7.4:-38001262 MS.gene055067:CDS
CAAGAGTCCTTCAACATATA+TGG 0.334427 7.4:-38000093 MS.gene055067:CDS
ACCTCTAACAGACGTATTCT+TGG 0.335993 7.4:-38000468 MS.gene055067:CDS
TTGTCATTGGTTGCAAGAAA+TGG 0.341523 7.4:+37999808 None:intergenic
GGAGTTGAGAACATGTTAAA+TGG 0.344732 7.4:-38000248 MS.gene055067:CDS
GTATCTTGGATGTGAAAATA+TGG 0.345574 7.4:-38000977 MS.gene055067:CDS
TCCAATACATTGACAGGTCT+TGG 0.352633 7.4:+38000422 None:intergenic
GTTTCTCTTCTGAAGTATCT+TGG 0.357240 7.4:-38000991 MS.gene055067:CDS
AGTTTCTTAACTTTGCCATT+AGG 0.370562 7.4:-38001417 MS.gene055067:CDS
AAAATTCTCTTTGTCAAGGT+TGG 0.380539 7.4:+38001311 None:intergenic
ATTTAGTGAAGTGCTCCTTA+TGG 0.380971 7.4:-38000499 MS.gene055067:CDS
GCATGGGAGCACACCTTGTA+AGG 0.388782 7.4:-38000385 MS.gene055067:CDS
CTTCTATTGTTCCCCTTACA+AGG 0.392190 7.4:+38000372 None:intergenic
GCCAAGAATACGTCTGTTAG+AGG 0.398341 7.4:+38000467 None:intergenic
TTGCCATTAGGCACTATTGC+AGG 0.406724 7.4:-38001405 MS.gene055067:CDS
TCATCATCAGCTCTAACTAA+TGG 0.430844 7.4:-37999838 MS.gene055067:CDS
ACCAAGACCTGTCAATGTAT+TGG 0.433905 7.4:-38000423 MS.gene055067:CDS
CAACAAAGTCCTTCCCTGCT+TGG 0.437327 7.4:+38001451 None:intergenic
CACAGAAACTTCAGTGGATG+GGG 0.462605 7.4:+38001515 None:intergenic
GAAGAAAGAATGATTAGCAT+TGG 0.467741 7.4:-37999984 MS.gene055067:CDS
TCTGTTACCATATATGTTGA+AGG 0.472437 7.4:+38000086 None:intergenic
TCAGCTCTAACTAATGGTCT+TGG 0.481193 7.4:-37999832 MS.gene055067:CDS
TCTAAATCCAATACATTGAC+AGG 0.482402 7.4:+38000416 None:intergenic
ACCTAAAATTCTCTTTGTCA+AGG 0.486256 7.4:+38001307 None:intergenic
TTCACAGAAACTTCAGTGGA+TGG 0.488867 7.4:+38001513 None:intergenic
GGAACAAAACCATTCTTAGC+AGG 0.489021 7.4:+38001087 None:intergenic
TAGAGGTGTCGCCGACCATA+AGG 0.500207 7.4:+38000484 None:intergenic
ATAGATTATCTATGTTGTCT+AGG 0.508322 7.4:+38000216 None:intergenic
AAAGGAAATCGCATCGGTAG+AGG 0.509174 7.4:+38000040 None:intergenic
AGTCCTGCAATAGTGCCTAA+TGG 0.509874 7.4:+38001402 None:intergenic
TCACAGAAACTTCAGTGGAT+GGG 0.511080 7.4:+38001514 None:intergenic
AAGGGGAACAATAGAAGTAA+AGG 0.522163 7.4:-38000366 MS.gene055067:CDS
AACATGTTAAATGGAAACTC+TGG 0.523592 7.4:-38000239 MS.gene055067:CDS
ATAAGAAAAGTTGCGGTCAC+CGG 0.523846 7.4:+38001066 None:intergenic
TCTGTATGCTTTGGGTGAAG+AGG 0.540891 7.4:-38000315 MS.gene055067:CDS
CTTTCTTCCAAATCAGAGAG+AGG 0.543946 7.4:+37999999 None:intergenic
AACATGAAGAATGTTAGTGT+TGG 0.544227 7.4:-38001363 MS.gene055067:CDS
TGTTCTCAACTCCTCCCAAA+GGG 0.549781 7.4:+38000258 None:intergenic
GATTAGCATTGGCAATAAAG+AGG 0.572173 7.4:-37999973 MS.gene055067:intron
CATGGGAGCACACCTTGTAA+GGG 0.584012 7.4:-38000384 MS.gene055067:CDS
ATCTGAGATAAGAAAAGTTG+CGG 0.589869 7.4:+38001059 None:intergenic
AGATAATCTATTCAAGAGCA+TGG 0.593603 7.4:-38000204 MS.gene055067:CDS
ATCGCATCGGTAGAGGAACC+TGG 0.597504 7.4:+38000047 None:intergenic
TTTATTTGTCCAAGCAGGGA+AGG 0.601075 7.4:-38001460 MS.gene055067:CDS
AGTGAAGTGCTCCTTATGGT+CGG 0.606083 7.4:-38000495 MS.gene055067:CDS
AACAATAGAAGTAAAGGCAA+TGG 0.611013 7.4:-38000360 MS.gene055067:CDS
GTTACGTAGGAAAGTAGCCA+TGG 0.616515 7.4:+38001551 None:intergenic
ATGTTCTCAACTCCTCCCAA+AGG 0.619718 7.4:+38000257 None:intergenic
GAAAAGAACCTATTTATGTG+AGG 0.621159 7.4:-38001118 MS.gene055067:CDS
AGTCAGAAAGGAAATCGCAT+CGG 0.623415 7.4:+38000034 None:intergenic
ATGGGAGCACACCTTGTAAG+GGG 0.628802 7.4:-38000383 MS.gene055067:CDS
TTGATGACACAGAAAAGTTG+AGG 0.631875 7.4:-38001209 MS.gene055067:CDS
CAAAGCAATTGAAGTTACGT+AGG 0.644804 7.4:+38001538 None:intergenic
GATGACTTAGTCATCACACC+AGG 0.706265 7.4:-38000065 MS.gene055067:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATGTTTTAATTTTTTTTG+TGG - chr7.4:38001442-38001461 MS.gene055067:CDS 10.0%
!!! AAATTTTGTGATTGTATTTA+TGG + chr7.4:38000746-38000765 None:intergenic 15.0%
!!! AGATTTTGAAAAAGAATTAT+TGG - chr7.4:38000058-38000077 MS.gene055067:CDS 15.0%
!!! ATACATTTTAGAATTTACAA+AGG + chr7.4:38000790-38000809 None:intergenic 15.0%
!! GTTATAGACATATAACAATT+TGG - chr7.4:38000617-38000636 MS.gene055067:intron 20.0%
!! TATTGTTCCATCAAATTAAT+TGG + chr7.4:38000089-38000108 None:intergenic 20.0%
!!! AATGTATTGGATTTAGATTT+TGG - chr7.4:38000931-38000950 MS.gene055067:intron 20.0%
!!! TTGGATTTAAAATATCTTTC+AGG + chr7.4:38001174-38001193 None:intergenic 20.0%
!!! TTTTTTAACCTCACATAAAT+AGG + chr7.4:38000234-38000253 None:intergenic 20.0%
! AAGAAAATTCTGTATGCTTT+GGG - chr7.4:38001018-38001037 MS.gene055067:CDS 25.0%
! ATAGATTATCTATGTTGTCT+AGG + chr7.4:38001128-38001147 None:intergenic 25.0%
! CATTTATATTGTAATCTCCT+AGG + chr7.4:38000596-38000615 None:intergenic 25.0%
! CTTAGACAATAAATCTGATT+TGG + chr7.4:38001193-38001212 None:intergenic 25.0%
! TAAGAAAATTCTGTATGCTT+TGG - chr7.4:38001017-38001036 MS.gene055067:CDS 25.0%
! TGAGAAATTTGAGAATTATC+AGG + chr7.4:38000323-38000342 None:intergenic 25.0%
!! AGCATACAGAATTTTCTTAT+TGG + chr7.4:38001016-38001035 None:intergenic 25.0%
!! CAAGTAAAATCCAATTTTGA+TGG - chr7.4:38001213-38001232 MS.gene055067:CDS 25.0%
!! TGAAGTTTCTGTGAAAATTT+TGG - chr7.4:37999836-37999855 MS.gene055067:CDS 25.0%
!!! AAATTTTTTGACATTCCCTT+TGG - chr7.4:38001068-38001087 MS.gene055067:CDS 25.0%
!!! AATTCTCATTTTAGTCAGAA+AGG + chr7.4:38001322-38001341 None:intergenic 25.0%
!!! AATTTTTTGACATTCCCTTT+GGG - chr7.4:38001069-38001088 MS.gene055067:CDS 25.0%
!!! GATTTGTTTTCCATCAAAAT+TGG + chr7.4:38001226-38001245 None:intergenic 25.0%
!!! GTTTAAGATTTTCTTGTCAT+TGG + chr7.4:38001549-38001568 None:intergenic 25.0%
AAAAAGAAGTTACTTCCCAA+AGG - chr7.4:38000542-38000561 MS.gene055067:intron 30.0%
AAAATTCTCTTTGTCAAGGT+TGG + chr7.4:38000033-38000052 None:intergenic 30.0%
AACAATAGAAGTAAAGGCAA+TGG - chr7.4:38000981-38001000 MS.gene055067:CDS 30.0%
AACATGAAGAATGTTAGTGT+TGG - chr7.4:37999978-37999997 MS.gene055067:CDS 30.0%
AACATGTTAAATGGAAACTC+TGG - chr7.4:38001102-38001121 MS.gene055067:CDS 30.0%
ACAATTCCTATGATTTCCTT+TGG + chr7.4:38000561-38000580 None:intergenic 30.0%
ACCTAAAATTCTCTTTGTCA+AGG + chr7.4:38000037-38000056 None:intergenic 30.0%
AGATAATCTATTCAAGAGCA+TGG - chr7.4:38001137-38001156 MS.gene055067:CDS 30.0%
AGTTTCTTAACTTTGCCATT+AGG - chr7.4:37999924-37999943 MS.gene055067:intron 30.0%
CAATTCCTATGATTTCCTTT+GGG + chr7.4:38000560-38000579 None:intergenic 30.0%
CATAAGAAACATGAACTTGT+CGG + chr7.4:38001427-38001446 None:intergenic 30.0%
GAAAAGAACCTATTTATGTG+AGG - chr7.4:38000223-38000242 MS.gene055067:CDS 30.0%
GAAGAAAGAATGATTAGCAT+TGG - chr7.4:38001357-38001376 MS.gene055067:CDS 30.0%
GTATCTTGGATGTGAAAATA+TGG - chr7.4:38000364-38000383 MS.gene055067:CDS 30.0%
GTTAAAAAACCTGCTAAGAA+TGG - chr7.4:38000245-38000264 MS.gene055067:CDS 30.0%
TCTAAATCCAATACATTGAC+AGG + chr7.4:38000928-38000947 None:intergenic 30.0%
TCTGTTACCATATATGTTGA+AGG + chr7.4:38001258-38001277 None:intergenic 30.0%
! AATTTTCACAGAAACTTCAG+TGG + chr7.4:37999835-37999854 None:intergenic 30.0%
! ACCTTGACAAAGAGAATTTT+AGG - chr7.4:38000033-38000052 MS.gene055067:CDS 30.0%
! ATCTGAGATAAGAAAAGTTG+CGG + chr7.4:38000285-38000304 None:intergenic 30.0%
!! AAGTTGAGGTCTTTTAATTG+TGG - chr7.4:38000146-38000165 MS.gene055067:CDS 30.0%
!! GATTTAGATTTTGGTAGCAT+GGG - chr7.4:38000940-38000959 MS.gene055067:intron 30.0%
!!! AAAGTTTTATTTGTCCAAGC+AGG - chr7.4:37999876-37999895 MS.gene055067:intron 30.0%
!!! AAGTTTTATTTGTCCAAGCA+GGG - chr7.4:37999877-37999896 MS.gene055067:intron 30.0%
!!! AATTTTTTTTGTGGAACTGC+AGG - chr7.4:38001451-38001470 MS.gene055067:CDS 30.0%
AAGGGGAACAATAGAAGTAA+AGG - chr7.4:38000975-38000994 MS.gene055067:CDS 35.0%
CAAAGCAATTGAAGTTACGT+AGG + chr7.4:37999806-37999825 None:intergenic 35.0%
CAAGAGTCCTTCAACATATA+TGG - chr7.4:38001248-38001267 MS.gene055067:CDS 35.0%
GGAGTTGAGAACATGTTAAA+TGG - chr7.4:38001093-38001112 MS.gene055067:CDS 35.0%
TACTTCCCAAAGGAAATCAT+AGG - chr7.4:38000552-38000571 MS.gene055067:intron 35.0%
! ATTCAAGAGCATGGTTGATT+TGG - chr7.4:38001146-38001165 MS.gene055067:CDS 35.0%
! ATTTAGTGAAGTGCTCCTTA+TGG - chr7.4:38000842-38000861 MS.gene055067:intron 35.0%
! GGTTCGACCAATTAATTTGA+TGG - chr7.4:38000079-38000098 MS.gene055067:CDS 35.0%
! TCATCATCAGCTCTAACTAA+TGG - chr7.4:38001503-38001522 MS.gene055067:CDS 35.0%
! TGTAATCTCCTAGGATTAGT+AGG + chr7.4:38000587-38000606 None:intergenic 35.0%
! TTGATGACACAGAAAAGTTG+AGG - chr7.4:38000132-38000151 MS.gene055067:CDS 35.0%
! TTGTCATTGGTTGCAAGAAA+TGG + chr7.4:38001536-38001555 None:intergenic 35.0%
!! GATTAGCATTGGCAATAAAG+AGG - chr7.4:38001368-38001387 MS.gene055067:CDS 35.0%
!! GGATTTAGATTTTGGTAGCA+TGG - chr7.4:38000939-38000958 MS.gene055067:intron 35.0%
!! GTTTCTCTTCTGAAGTATCT+TGG - chr7.4:38000350-38000369 MS.gene055067:CDS 35.0%
!!! TGCTAAGAATGGTTTTGTTC+CGG - chr7.4:38000256-38000275 MS.gene055067:CDS 35.0%
ACCAAGACCTGTCAATGTAT+TGG - chr7.4:38000918-38000937 MS.gene055067:intron 40.0%
ACCTCTAACAGACGTATTCT+TGG - chr7.4:38000873-38000892 MS.gene055067:intron 40.0%
ACTAGTATGCCTGAACTTCT+TGG + chr7.4:38000715-38000734 None:intergenic 40.0%
AGTCAGAAAGGAAATCGCAT+CGG + chr7.4:38001310-38001329 None:intergenic 40.0%
ATAAGAAAAGTTGCGGTCAC+CGG + chr7.4:38000278-38000297 None:intergenic 40.0%
ATTGTCCACCTACTAATCCT+AGG - chr7.4:38000576-38000595 MS.gene055067:intron 40.0%
CATGATTTCCCAAGAAGTTC+AGG - chr7.4:38000703-38000722 MS.gene055067:intron 40.0%
CTAGTATGCCTGAACTTCTT+GGG + chr7.4:38000714-38000733 None:intergenic 40.0%
CTTCTATTGTTCCCCTTACA+AGG + chr7.4:38000972-38000991 None:intergenic 40.0%
CTTTCTTCCAAATCAGAGAG+AGG + chr7.4:38001345-38001364 None:intergenic 40.0%
GACTGTTGATATCACTCGTA+AGG - chr7.4:38000404-38000423 MS.gene055067:CDS 40.0%
GAGAATTCCTCTCTCTGATT+TGG - chr7.4:38001335-38001354 MS.gene055067:CDS 40.0%
GGAACAAAACCATTCTTAGC+AGG + chr7.4:38000257-38000276 None:intergenic 40.0%
TCACAGAAACTTCAGTGGAT+GGG + chr7.4:37999830-37999849 None:intergenic 40.0%
TCCAATACATTGACAGGTCT+TGG + chr7.4:38000922-38000941 None:intergenic 40.0%
TGTTGATATCACTCGTAAGG+AGG - chr7.4:38000407-38000426 MS.gene055067:CDS 40.0%
TTCACAGAAACTTCAGTGGA+TGG + chr7.4:37999831-37999850 None:intergenic 40.0%
TTTATTTGTCCAAGCAGGGA+AGG - chr7.4:37999881-37999900 MS.gene055067:intron 40.0%
! AATCTCCTAGGATTAGTAGG+TGG + chr7.4:38000584-38000603 None:intergenic 40.0%
! TCAGCTCTAACTAATGGTCT+TGG - chr7.4:38001509-38001528 MS.gene055067:CDS 40.0%
! TTTTTGACATTCCCTTTGGG+AGG - chr7.4:38001072-38001091 MS.gene055067:CDS 40.0%
AGTCCTGCAATAGTGCCTAA+TGG + chr7.4:37999942-37999961 None:intergenic 45.0%
ATGTTCTCAACTCCTCCCAA+AGG + chr7.4:38001087-38001106 None:intergenic 45.0%
CACAGAAACTTCAGTGGATG+GGG + chr7.4:37999829-37999848 None:intergenic 45.0%
GATGACTTAGTCATCACACC+AGG - chr7.4:38001276-38001295 MS.gene055067:CDS 45.0%
GCCAAGAATACGTCTGTTAG+AGG + chr7.4:38000877-38000896 None:intergenic 45.0%
TGTTCTCAACTCCTCCCAAA+GGG + chr7.4:38001086-38001105 None:intergenic 45.0%
TTGCCATTAGGCACTATTGC+AGG - chr7.4:37999936-37999955 MS.gene055067:intron 45.0%
! AAAGGAAATCGCATCGGTAG+AGG + chr7.4:38001304-38001323 None:intergenic 45.0%
! AGTGAAGTGCTCCTTATGGT+CGG - chr7.4:38000846-38000865 MS.gene055067:intron 45.0%
! TCTGTATGCTTTGGGTGAAG+AGG - chr7.4:38001026-38001045 MS.gene055067:CDS 45.0%
CAACAAAGTCCTTCCCTGCT+TGG + chr7.4:37999893-37999912 None:intergenic 50.0%
CAGTAGCAGCTTCGCTTCTT+AGG + chr7.4:38000194-38000213 None:intergenic 50.0%
! ATGGGAGCACACCTTGTAAG+GGG - chr7.4:38000958-38000977 MS.gene055067:intron 50.0%
! CATGGGAGCACACCTTGTAA+GGG - chr7.4:38000957-38000976 MS.gene055067:intron 50.0%
! ATCGCATCGGTAGAGGAACC+TGG + chr7.4:38001297-38001316 None:intergenic 55.0%
! GCATGGGAGCACACCTTGTA+AGG - chr7.4:38000956-38000975 MS.gene055067:intron 55.0%
!! TAGAGGTGTCGCCGACCATA+AGG + chr7.4:38000860-38000879 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 37999792 38001571 37999792 ID=MS.gene055067
chr7.4 mRNA 37999792 38001571 37999792 ID=MS.gene055067.t1;Parent=MS.gene055067
chr7.4 exon 38000962 38001571 38000962 ID=MS.gene055067.t1.exon1;Parent=MS.gene055067.t1
chr7.4 CDS 38000962 38001571 38000962 ID=cds.MS.gene055067.t1;Parent=MS.gene055067.t1
chr7.4 exon 37999974 38000521 37999974 ID=MS.gene055067.t1.exon2;Parent=MS.gene055067.t1
chr7.4 CDS 37999974 38000521 37999974 ID=cds.MS.gene055067.t1;Parent=MS.gene055067.t1
chr7.4 exon 37999792 37999890 37999792 ID=MS.gene055067.t1.exon3;Parent=MS.gene055067.t1
chr7.4 CDS 37999792 37999890 37999792 ID=cds.MS.gene055067.t1;Parent=MS.gene055067.t1
Gene Sequence

>MS.gene055067

ATGGCTACTTTCCTACGTAACTTCAATTGCTTTGCCCCATCCACTGAAGTTTCTGTGAAAATTTTGGTAGATGAAGTCAGAAACAAAGTTTTATTTGTCCAAGCAGGGAAGGACTTTGTTGATGTGCTGCTAAGTTTCTTAACTTTGCCATTAGGCACTATTGCAGGACTTTTGAGTCAAGAATCTAACATGAAGAATGTTAGTGTTGGAAGCTTAAGCATGTTATATCAAAGTGTTTCCAACCTTGACAAAGAGAATTTTAGGTCAGATTTTGAAAAAGAATTATTGGTTCGACCAATTAATTTGATGGAACAATATTGCAAGTATCTAAAACTCAACATTGATGACACAGAAAAGTTGAGGTCTTTTAATTGTGGCAAACAAAAGTGCATTGATATACCTAAGAAGCGAAGCTGCTACTGCTGTGAAAAGAAAAGAACCTATTTATGTGAGGTTAAAAAACCTGCTAAGAATGGTTTTGTTCCGGTGACCGCAACTTTTCTTATCTCAGATGATTTGAATGTGAAGCCTGATAATTCTCAAATTTCTCAAAATAGTGTTTCTCTTCTGAAGTATCTTGGATGTGAAAATATGGATTTCTATCAAGATAGTGACTGTTGATATCACTCGTAAGGAGGTATCTATCTCTTTTGAAAATTCTCAATACTCTTGTATAATTTATGTCTAATGTGATTTTCTTTGCTTTAAAATTTGCTAAAAAAAACTTTATGAATATAGACGAAAAAACGTAAAAAGAAGTTACTTCCCAAAGGAAATCATAGGAATTGTCCACCTACTAATCCTAGGAGATTACAATATAAATGTGTTATAGACATATAACAATTTGGTAGAAATATGCTGTAATTTGTATCTACTTTCATGTTCGATATATTGAAAGTTATAGAATTTTACATGATTTCCCAAGAAGTTCAGGCATACTAGTACTATCATCCATAAATACAATCACAAAATTTTGTTCAAATTTATCTAAATTTCCTTTGTAAATTCTAAAATGTATAACATTTTACATTGCTTTATTGTAGATACTAGATTTAGTGAAGTGCTCCTTATGGTCGGCGACACCTCTAACAGACGTATTCTTGGCGAAGAAACTGTTTATTGAGAAACCAAGACCTGTCAATGTATTGGATTTAGATTTTGGTAGCATGGGAGCACACCTTGTAAGGGGAACAATAGAAGTAAAGGCAATGGTGAGAAAATCCAATAAGAAAATTCTGTATGCTTTGGGTGAAGAGGACTTTGCAGACTTGTTACTAAATTTTTTGACATTCCCTTTGGGAGGAGTTGAGAACATGTTAAATGGAAACTCTGGCCTAGACAACATAGATAATCTATTCAAGAGCATGGTTGATTTGGATCCTGAAAGATATTTTAAATCCAAATCAGATTTATTGTCTAAGCAAGTAAAATCCAATTTTGATGGAAAACAAATCATCAAGAGTCCTTCAACATATATGGTAACAGATGACTTAGTCATCACACCAGGTTCCTCTACCGATGCGATTTCCTTTCTGACTAAAATGAGAATTCCTCTCTCTGATTTGGAAGAAAGAATGATTAGCATTGGCAATAAAGAGGTAAATTGCTGTTGTCGATTTCATTTCTTTTATTCCGACAAGTTCATGTTTCTTATGTTTTAATTTTTTTTGTGGAACTGCAGGCTCATAGTCTTCTTAAAGCTTCTTTGATCTCATCATCAGCTCTAACTAATGGTCTTGGTCCATTTCTTGCAACCAATGACAAGAAAATCTTAAACTAA
Protein sequence

>MS.gene055067.t1

MATFLRNFNCFAPSTEVSVKILVDEVRNKVLFVQAGKDFVDVLLSFLTLPLGTIAGLLSQESNMKNVSVGSLSMLYQSVSNLDKENFRSDFEKELLVRPINLMEQYCKYLKLNIDDTEKLRSFNCGKQKCIDIPKKRSCYCCEKKRTYLCEVKKPAKNGFVPVTATFLISDDLNVKPDNSQISQNSVSLLKYLGCENMDFYQDNLVKCSLWSATPLTDVFLAKKLFIEKPRPVNVLDLDFGSMGAHLVRGTIEVKAMVRKSNKKILYALGEEDFADLLLNFLTFPLGGVENMLNGNSGLDNIDNLFKSMVDLDPERYFKSKSDLLSKQVKSNFDGKQIIKSPSTYMVTDDLVITPGSSTDAISFLTKMRIPLSDLEERMISIGNKEAHSLLKASLISSSALTNGLGPFLATNDKKILN