AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene037540

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037540.t1 MTR_4g017470 66.324 487 103 6 1 427 1 486 0.0 590
MS.gene037540.t1 MTR_4g017410 73.397 312 55 3 125 427 208 500 1.09e-146 427
MS.gene037540.t1 MTR_4g017410 79.070 129 19 3 1 126 1 124 7.17e-61 206
MS.gene037540.t1 MTR_4g017410 28.112 249 144 8 182 404 1 240 1.09e-14 76.3
MS.gene037540.t1 MTR_4g017550 72.260 292 70 4 126 408 181 470 7.69e-138 403
MS.gene037540.t1 MTR_4g017550 77.907 86 14 2 41 126 20 100 1.50e-34 134
MS.gene037540.t1 MTR_4g017830 48.728 511 166 11 1 418 1 508 2.06e-132 391
MS.gene037540.t1 MTR_4g017440 64.120 301 99 3 125 417 209 508 3.73e-125 372
MS.gene037540.t1 MTR_4g017440 71.756 131 32 2 1 126 1 131 1.54e-51 181
MS.gene037540.t1 MTR_4g019340 61.458 288 77 4 125 401 239 503 3.69e-107 326
MS.gene037540.t1 MTR_4g019340 63.710 124 33 3 10 126 36 154 7.34e-40 149
MS.gene037540.t1 MTR_4g017610 55.124 283 114 5 125 407 206 475 4.29e-89 278
MS.gene037540.t1 MTR_4g017610 72.222 126 33 2 1 125 1 125 3.71e-55 190
MS.gene037540.t1 MTR_4g019310 39.869 306 159 8 126 419 207 499 3.59e-52 182
MS.gene037540.t1 MTR_4g019310 48.780 123 58 2 1 123 1 118 2.01e-29 120
MS.gene037540.t1 MTR_4g019310 27.426 237 144 6 190 404 8 238 2.11e-11 65.9
MS.gene037540.t1 MTR_7g066580 29.806 463 234 10 18 411 1 441 1.17e-46 166
MS.gene037540.t1 MTR_4g019240 55.901 161 53 5 1 157 1 147 5.48e-46 157
MS.gene037540.t1 MTR_4g019240 68.627 51 16 0 370 420 113 163 2.51e-13 68.6
MS.gene037540.t1 MTR_7g063920 28.875 471 246 10 1 417 1 436 5.15e-44 159
MS.gene037540.t1 MTR_7g066310 31.555 431 210 12 7 407 4 379 1.23e-43 157
MS.gene037540.t1 MTR_2g029400 30.626 431 213 14 13 399 15 403 8.06e-41 150
MS.gene037540.t1 MTR_7g063880 28.163 490 247 14 1 412 1 463 7.34e-37 140
MS.gene037540.t1 MTR_7g066400 28.340 494 206 17 1 407 1 433 1.12e-36 139
MS.gene037540.t1 MTR_7g066430 32.803 314 180 7 122 413 183 487 4.03e-35 136
MS.gene037540.t1 MTR_7g066430 41.441 111 56 3 13 123 5 106 1.33e-17 85.1
MS.gene037540.t1 MTR_7g066570 32.459 305 186 6 132 425 199 494 1.33e-34 135
MS.gene037540.t1 MTR_7g066570 46.400 125 56 4 1 123 1 116 4.89e-23 102
MS.gene037540.t1 MTR_7g066410 32.515 326 174 8 123 412 198 513 2.19e-33 131
MS.gene037540.t1 MTR_7g066410 44.144 111 53 3 13 123 11 112 1.47e-21 97.4
MS.gene037540.t1 MTR_1g014060 31.776 428 215 18 21 417 9 390 3.61e-33 129
MS.gene037540.t1 MTR_7g062280 33.550 307 166 8 126 417 208 491 4.48e-31 124
MS.gene037540.t1 MTR_7g062280 39.823 113 59 2 13 125 11 114 1.62e-15 79.0
MS.gene037540.t1 MTR_7g058710 31.613 310 184 9 123 417 187 483 1.50e-30 123
MS.gene037540.t1 MTR_7g058710 41.935 124 51 2 1 124 1 103 1.80e-23 102
MS.gene037540.t1 MTR_7g066490 26.752 471 195 10 13 412 17 408 2.59e-30 121
MS.gene037540.t1 MTR_7g063660 31.392 309 187 7 119 417 184 477 8.25e-29 118
MS.gene037540.t1 MTR_7g063660 41.176 119 59 3 8 125 5 113 1.22e-18 88.2
MS.gene037540.t1 MTR_7g063660 28.947 190 104 7 185 360 4 176 1.66e-13 72.4
MS.gene037540.t1 MTR_7g066350 32.881 295 143 8 125 407 194 445 1.72e-27 114
MS.gene037540.t1 MTR_7g066350 45.968 124 56 4 3 126 2 114 5.05e-23 101
MS.gene037540.t1 MTR_7g066350 26.957 230 143 5 190 405 9 227 1.09e-14 76.3
MS.gene037540.t1 MTR_7g062300 31.667 300 165 9 126 410 198 472 2.14e-27 114
MS.gene037540.t1 MTR_7g062300 38.400 125 68 2 1 125 1 116 2.35e-17 84.3
MS.gene037540.t1 MTR_7g062300 28.571 259 142 10 179 416 1 237 4.63e-12 68.2
MS.gene037540.t1 MTR_7g066340 31.802 283 157 8 131 411 205 453 7.78e-27 112
MS.gene037540.t1 MTR_7g066340 44.262 122 55 4 2 123 6 114 7.55e-23 100
MS.gene037540.t1 MTR_7g066340 27.542 236 134 8 190 404 12 231 5.78e-14 73.9
MS.gene037540.t1 MTR_7g063900 31.270 307 174 9 126 412 194 483 8.47e-27 112
MS.gene037540.t1 MTR_7g063900 41.525 118 56 3 10 125 8 114 1.19e-18 88.2
MS.gene037540.t1 MTR_7g063900 28.205 234 133 8 189 404 9 225 9.79e-14 73.2
MS.gene037540.t1 MTR_7g066260 31.864 295 151 7 126 408 203 459 3.11e-25 108
MS.gene037540.t1 MTR_7g066260 48.182 110 48 3 13 122 16 116 4.39e-24 104
MS.gene037540.t1 MTR_7g066260 30.085 236 128 9 190 404 15 234 6.10e-13 70.9
MS.gene037540.t1 MTR_7g012680 31.071 280 170 6 140 417 193 451 9.13e-25 106
MS.gene037540.t1 MTR_7g012680 47.414 116 50 4 7 122 11 115 1.07e-23 103
MS.gene037540.t1 MTR_7g066680 32.830 265 150 9 141 391 37 287 2.98e-24 103
MS.gene037540.t1 MTR_7g063670 31.293 294 168 9 128 417 194 457 3.43e-24 104
MS.gene037540.t1 MTR_7g063670 37.795 127 54 3 1 125 4 107 1.63e-12 69.3
MS.gene037540.t1 MTR_7g066360 47.321 112 50 3 13 124 15 117 2.67e-23 102
MS.gene037540.t1 MTR_7g066360 33.219 292 142 9 126 408 199 446 5.77e-21 95.1
MS.gene037540.t1 MTR_7g066360 30.220 182 94 5 193 357 17 182 2.47e-11 65.9
MS.gene037540.t1 MTR_3g007740 28.472 288 181 4 126 412 180 443 4.27e-23 101
MS.gene037540.t1 MTR_3g007740 36.508 126 54 4 1 125 1 101 1.19e-11 66.6
MS.gene037540.t1 MTR_1g041315 31.629 313 132 13 111 395 193 451 4.79e-23 101
MS.gene037540.t1 MTR_1g041315 38.194 144 80 3 5 148 7 141 5.65e-22 98.2
MS.gene037540.t1 MTR_7g063840 28.428 299 186 7 128 417 194 473 2.98e-22 99.0
MS.gene037540.t1 MTR_7g063840 43.411 129 58 4 7 132 5 121 2.27e-19 90.5
MS.gene037540.t1 MTR_7g063820 30.667 300 179 7 131 417 201 484 1.92e-21 96.7
MS.gene037540.t1 MTR_7g063820 43.651 126 57 5 1 125 1 113 1.91e-17 84.7
MS.gene037540.t1 MTR_7g066290 43.443 122 59 4 1 122 5 116 4.28e-21 95.1
MS.gene037540.t1 MTR_7g066290 36.196 163 89 5 125 275 202 361 5.15e-11 64.7
MS.gene037540.t1 MTR_7g066480 29.514 288 139 5 126 412 198 422 8.46e-21 94.4
MS.gene037540.t1 MTR_7g066480 45.045 111 52 2 13 123 17 118 2.41e-17 84.0
MS.gene037540.t1 MTR_7g063830 28.956 297 146 7 128 412 196 439 1.86e-20 93.6
MS.gene037540.t1 MTR_7g063830 40.000 115 56 3 13 125 11 114 2.73e-18 87.0
MS.gene037540.t1 MTR_7g063830 26.562 256 150 10 185 421 5 241 6.76e-12 67.4
MS.gene037540.t1 MTR_7g063890 29.936 314 181 9 126 418 210 505 1.38e-19 91.3
MS.gene037540.t1 MTR_7g063890 40.351 114 57 3 13 125 28 131 5.86e-17 83.2
MS.gene037540.t1 MTR_7g066280 31.557 244 128 9 193 407 153 386 3.63e-19 89.4
MS.gene037540.t1 MTR_7g058700 28.821 229 109 4 190 417 752 927 1.09e-18 89.4
MS.gene037540.t1 MTR_7g058700 37.241 145 58 5 10 146 509 628 1.95e-14 75.9
MS.gene037540.t1 MTR_8g445860 28.696 230 148 5 186 405 9 232 2.67e-18 84.3
MS.gene037540.t1 MTR_1g115440 28.455 246 141 7 181 405 2 233 9.09e-17 79.7
MS.gene037540.t1 MTR_1g115440 34.426 122 65 4 13 134 12 118 7.19e-12 65.5
MS.gene037540.t1 MTR_7g100420 29.167 288 155 8 141 407 134 393 2.48e-16 80.9
MS.gene037540.t1 MTR_7g100420 65.116 43 15 0 12 54 39 81 7.69e-11 63.9
MS.gene037540.t1 MTR_7g062270 37.500 128 67 4 1 127 1 116 4.77e-16 79.7
MS.gene037540.t1 MTR_7g063850 26.210 248 151 7 184 417 59 288 7.66e-16 78.2
MS.gene037540.t1 MTR_3g065200 30.374 214 135 6 193 405 215 415 1.78e-15 78.6
MS.gene037540.t1 MTR_3g065200 37.600 125 53 5 13 131 4 109 1.36e-11 66.6
MS.gene037540.t1 MTR_4g019330 30.093 216 90 5 204 417 32 188 3.90e-15 73.9
MS.gene037540.t1 MTR_0150s0010 27.426 237 147 5 185 405 5 232 9.22e-15 73.9
MS.gene037540.t1 MTR_0150s0010 34.375 128 68 4 1 128 1 112 7.25e-11 62.4
MS.gene037540.t1 MTR_6g006800 70.213 47 13 1 1 47 1 46 9.42e-13 63.5
MS.gene037540.t1 MTR_1g115450 41.333 75 44 0 185 259 2 76 1.94e-12 64.7
MS.gene037540.t1 MTR_1g115450 33.333 114 62 2 13 126 8 107 2.94e-11 61.6
MS.gene037540.t1 MTR_8g445920 41.791 67 39 0 185 251 5 71 3.05e-12 63.5
MS.gene037540.t1 MTR_8g044890 41.791 67 39 0 185 251 5 71 3.05e-12 63.5
MS.gene037540.t1 MTR_1g115455 38.298 94 49 2 182 267 1 93 3.12e-12 66.6
MS.gene037540.t1 MTR_1g115455 37.234 94 43 3 13 105 10 88 9.44e-11 62.0
MS.gene037540.t1 MTR_0150s0030 42.029 69 40 0 185 253 3 71 7.89e-12 64.7
MS.gene037540.t1 MTR_8g445910 43.478 69 39 0 185 253 3 71 4.38e-11 63.5
MS.gene037540.t1 MTR_8g044880 43.478 69 39 0 185 253 3 71 5.61e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene037540.t1 AT5G01120 30.699 329 198 11 117 427 191 507 1.84e-32 129
MS.gene037540.t1 AT5G01120 40.708 113 58 3 13 125 10 113 5.76e-16 80.1
MS.gene037540.t1 AT5G01140 26.050 476 248 13 15 417 12 456 3.13e-32 127
MS.gene037540.t1 AT5G43240 30.973 339 201 12 109 427 42 367 6.27e-28 114
MS.gene037540.t1 AT5G43240 31.105 344 194 13 109 427 186 511 3.39e-27 114
MS.gene037540.t1 AT5G43240 43.363 113 55 3 13 125 10 113 2.31e-17 84.7
MS.gene037540.t1 AT5G43240 31.105 344 194 13 109 427 186 511 3.39e-27 114
MS.gene037540.t1 AT5G43240 43.363 113 55 3 13 125 10 113 2.31e-17 84.7
MS.gene037540.t1 AT5G43240 31.105 344 194 13 109 427 186 511 3.39e-27 114
MS.gene037540.t1 AT5G43240 43.363 113 55 3 13 125 10 113 2.31e-17 84.7
MS.gene037540.t1 AT5G01130 30.584 291 162 8 126 411 189 444 1.35e-25 108
MS.gene037540.t1 AT5G01130 39.286 112 57 3 13 123 10 111 1.22e-16 82.0
MS.gene037540.t1 AT5G37320 30.408 319 177 12 104 412 197 480 4.29e-23 101
MS.gene037540.t1 AT5G37320 40.187 107 54 4 19 125 18 114 3.62e-14 74.7
MS.gene037540.t1 AT5G01150 26.710 307 198 7 125 419 196 487 8.73e-21 94.7
MS.gene037540.t1 AT5G01150 44.037 109 52 3 15 123 12 111 3.27e-19 90.1
MS.gene037540.t1 AT3G09140 27.181 298 193 6 125 412 211 494 5.87e-20 92.4
MS.gene037540.t1 AT3G09140 29.960 247 145 9 182 404 1 243 1.61e-16 82.0
MS.gene037540.t1 AT3G09140 37.500 112 61 3 11 122 8 110 7.11e-14 73.9
MS.gene037540.t1 AT3G09140 27.622 286 183 6 137 412 251 522 3.76e-18 87.0
MS.gene037540.t1 AT3G09140 37.500 112 61 3 11 122 8 110 8.07e-14 73.6
MS.gene037540.t1 AT3G09140 30.189 212 121 8 182 370 1 208 5.58e-13 71.2
MS.gene037540.t1 AT3G09120 39.474 114 57 3 13 125 7 109 4.41e-18 85.1
MS.gene037540.t1 AT3G09120 26.407 231 152 6 188 405 4 229 5.15e-11 63.9
MS.gene037540.t1 AT3G09110 38.655 119 64 3 9 127 6 115 6.25e-17 82.0
MS.gene037540.t1 AT3G09110 36.364 143 83 4 113 251 180 318 9.04e-13 69.7

Find 91 sgRNAs with CRISPR-Local

Find 217 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGCTTCACATGGATTTC+TGG 0.119581 4.3:+82089125 None:intergenic
CATCATTTGAATTGAGATTT+TGG 0.129092 4.3:+82089187 None:intergenic
GTCATTGTTGTTGTTATTCC+TGG 0.237924 4.3:+82089266 None:intergenic
AGGTCGGTTATCTTTGTTCT+TGG 0.278077 4.3:+82087280 None:intergenic
AGGAGTGATTTCTAAGTCTA+AGG 0.286294 4.3:-82086856 MS.gene037540:CDS
ACTACATATTACTATGGTAT+AGG 0.294051 4.3:-82086927 MS.gene037540:CDS
CACCAGTGACAACAGGAAAT+TGG 0.303337 4.3:-82087222 MS.gene037540:CDS
TATTCCTGGTGGTGGCTAAA+AGG 0.313041 4.3:+82089280 None:intergenic
ATCTCAATTCAAATGATGTT+TGG 0.325115 4.3:-82089182 MS.gene037540:CDS
CTACGTGAATACTCTGTCTT+AGG 0.344373 4.3:+82086900 None:intergenic
GTGAAGAGAGCAGCATTATA+TGG 0.358751 4.3:-82086753 MS.gene037540:CDS
CTACATATTACTATGGTATA+GGG 0.380267 4.3:-82086926 MS.gene037540:CDS
AATGCTTCACATGGATTTCT+GGG 0.382524 4.3:+82089126 None:intergenic
GTGGGTGGTGGTTGAACTTC+CGG 0.401357 4.3:+82086948 None:intergenic
AGCTTCCTTACCATGCCATT+AGG 0.401925 4.3:-82087119 MS.gene037540:CDS
ACACGTCCAGCAAAAGAATT+AGG 0.402172 4.3:+82087074 None:intergenic
CCACCCACTACATATTACTA+TGG 0.404760 4.3:-82086933 MS.gene037540:CDS
CAAAGGCTCATCAGAGGTTA+AGG 0.411865 4.3:+82087328 None:intergenic
AAACCAGCCCCTCAACATTC+CGG 0.416958 4.3:-82086967 MS.gene037540:CDS
TCTCGGTTCCATTGCAATCA+AGG 0.422873 4.3:+82086812 None:intergenic
ACTGCTGATGCAAGTTGGTT+AGG 0.427676 4.3:+82087260 None:intergenic
CTTCCGGAATGTTGAGGGGC+TGG 0.432152 4.3:+82086964 None:intergenic
TTCAGATTTGGCTCAAATAG+AGG 0.433676 4.3:-82088246 MS.gene037540:intron
AATTCCCCTCAAAATGTTAG+TGG 0.442870 4.3:-82089400 MS.gene037540:CDS
CTTGATCCGTTGAGGGATCT+CGG 0.448216 4.3:+82086795 None:intergenic
GTACAAAAGTGTGGAGAACT+TGG 0.451915 4.3:-82087042 MS.gene037540:CDS
GGATCCGTTGTAAAGCTTCT+CGG 0.455599 4.3:-82087098 MS.gene037540:CDS
TGCCTTGCACCAGTGACAAC+AGG 0.457008 4.3:-82087229 MS.gene037540:CDS
ATGGTATTGATTCTGATTGT+TGG 0.459184 4.3:+82089244 None:intergenic
TTGAACTTCCGGAATGTTGA+GGG 0.460651 4.3:+82086959 None:intergenic
CTGGTTTAGGCACACTCAAA+AGG 0.467866 4.3:+82086470 None:intergenic
AGCAAAATCCTTGATTGCAA+TGG 0.473177 4.3:-82086820 MS.gene037540:CDS
ATGTCTGTGTTACTCGATCC+TGG 0.473190 4.3:-82087014 MS.gene037540:CDS
GTTGAACTTCCGGAATGTTG+AGG 0.473700 4.3:+82086958 None:intergenic
AACAGCATTTGTTTGCAGAC+AGG 0.475302 4.3:+82089153 None:intergenic
ATCCAATTTCCTGTTGTCAC+TGG 0.480035 4.3:+82087220 None:intergenic
AGAGCAGCATTATATGGTAT+AGG 0.480188 4.3:-82086747 MS.gene037540:CDS
GCTGGTTTAGACAACTAAAC+TGG 0.481695 4.3:+82086982 None:intergenic
TGGTGCCAAGTGGAAGAGAT+AGG 0.487529 4.3:+82089310 None:intergenic
GGATCAAGAGATGATGCTAC+TGG 0.488902 4.3:-82086780 MS.gene037540:CDS
AGCTTCCTATCTCTTCCACT+TGG 0.491188 4.3:-82089315 MS.gene037540:CDS
ATCATCTCTTGATCCGTTGA+GGG 0.492757 4.3:+82086788 None:intergenic
TTGATGTCAAGAATGCTTGA+AGG 0.493162 4.3:+82086521 None:intergenic
AGCTTTACAACGGATCCTAA+TGG 0.495250 4.3:+82087104 None:intergenic
GTTGTTGTTATTCCTGGTGG+TGG 0.496331 4.3:+82089272 None:intergenic
GAAGTCAACAAAATCTCCAT+TGG 0.498206 4.3:+82087148 None:intergenic
TAGCTTGCACCGTTATATAG+AGG 0.502779 4.3:-82086880 MS.gene037540:CDS
GAAAGTGTCAACAAAGTCCT+TGG 0.507259 4.3:+82089341 None:intergenic
AGGAAAGAATCAGAAGAAAG+TGG 0.520631 4.3:+82086705 None:intergenic
CTAAACTGGTGTGCTATACC+AGG 0.532086 4.3:+82086996 None:intergenic
CTCTAACTGCTGATGCAAGT+TGG 0.535856 4.3:+82087255 None:intergenic
TTAAATCTTTCAAATATGAA+AGG 0.539040 4.3:+82086685 None:intergenic
TCAAGATTTACCTTGACTAG+TGG 0.544138 4.3:-82086502 MS.gene037540:CDS
CTTCAAGATCATCAAGAGGA+AGG 0.549012 4.3:+82086661 None:intergenic
TTTCTGATGTTGTCAAGGAA+TGG 0.556391 4.3:+82089225 None:intergenic
TTGTAGCTGTTCAGAAGCCA+TGG 0.558598 4.3:+82089437 None:intergenic
TTCCTGTTGTCACTGGTGCA+AGG 0.566131 4.3:+82087227 None:intergenic
GGAGTGATTTCTAAGTCTAA+GGG 0.566521 4.3:-82086855 MS.gene037540:CDS
TCACTCCTCCCTCTATATAA+CGG 0.567399 4.3:+82086871 None:intergenic
CTGATGCAAGTTGGTTAGGT+CGG 0.567745 4.3:+82087264 None:intergenic
ATAATCTTTGCAGAAACCAA+TGG 0.568343 4.3:-82087164 MS.gene037540:CDS
TGGTAATTTGTACAAAAGTG+TGG 0.569416 4.3:-82087051 MS.gene037540:CDS
TCTTGATGATCTTGAAGTGA+AGG 0.571298 4.3:-82086655 MS.gene037540:CDS
CATCATCTCTTGATCCGTTG+AGG 0.577105 4.3:+82086787 None:intergenic
GTCTTTAAGTCCACTAGTCA+AGG 0.577600 4.3:+82086492 None:intergenic
CGGATCCTAATGGCATGGTA+AGG 0.586168 4.3:+82087114 None:intergenic
AGAGGTTTCTGATGTTGTCA+AGG 0.592804 4.3:+82089220 None:intergenic
TTCATGCACAATGCTTCACA+TGG 0.593963 4.3:+82089117 None:intergenic
TAGTAATATGTAGTGGGTGG+TGG 0.598894 4.3:+82086936 None:intergenic
ATTGTTGTTGTTATTCCTGG+TGG 0.607529 4.3:+82089269 None:intergenic
GAAGTGAAGGTGATAAGTAT+TGG 0.607725 4.3:-82086642 MS.gene037540:CDS
AGCTTGCACCGTTATATAGA+GGG 0.609591 4.3:-82086879 MS.gene037540:CDS
AAATGTTAGTGGACAAACAA+AGG 0.609948 4.3:-82089389 MS.gene037540:CDS
ATACCATAGTAATATGTAGT+GGG 0.610428 4.3:+82086930 None:intergenic
GATAAGTATTGGTGAAGCTG+AGG 0.615073 4.3:-82086631 MS.gene037540:intron
ACAAAACATTGGCAAACAAG+AGG 0.622350 4.3:-82088216 MS.gene037540:intron
GAGGAAGTCACACAAAACAT+TGG 0.622642 4.3:-82088227 MS.gene037540:CDS
TATACCATAGTAATATGTAG+TGG 0.628329 4.3:+82086929 None:intergenic
TTCACTTCAAGATCATCAAG+AGG 0.629431 4.3:+82086657 None:intergenic
AGGTTAAGGTATGCTTGAGG+AGG 0.635555 4.3:+82087342 None:intergenic
CCATAGTAATATGTAGTGGG+TGG 0.647197 4.3:+82086933 None:intergenic
TACAACGGATCCTAATGGCA+TGG 0.650564 4.3:+82087109 None:intergenic
ATTTGTCAAAGGCTCATCAG+AGG 0.659166 4.3:+82087322 None:intergenic
TGAACTTCCGGAATGTTGAG+GGG 0.660190 4.3:+82086960 None:intergenic
CAGAGGTTAAGGTATGCTTG+AGG 0.671381 4.3:+82087339 None:intergenic
ATGGAACCGAGATCCCTCAA+CGG 0.675491 4.3:-82086801 MS.gene037540:CDS
TTGCACCGTTATATAGAGGG+AGG 0.682014 4.3:-82086876 MS.gene037540:CDS
AGGCGAACGATGGTGCCAAG+TGG 0.699497 4.3:+82089300 None:intergenic
AGGTCCGAGAAGCTTTACAA+CGG 0.701078 4.3:+82087094 None:intergenic
GGTGGCTAAAAGGCGAACGA+TGG 0.723514 4.3:+82089290 None:intergenic
GATCGAGTAACACAGACATG+CGG 0.763585 4.3:+82087018 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAACATTATTTTTGTTT+TGG - chr4.3:82087383-82087402 MS.gene037540:intron 10.0%
!! AAAATAGATATACATAAATG+TGG + chr4.3:82087313-82087332 None:intergenic 15.0%
!! AAAATAGATCTATTAAAGAA+AGG + chr4.3:82088427-82088446 None:intergenic 15.0%
!! AAATAGATATACATAAATGT+GGG + chr4.3:82087312-82087331 None:intergenic 15.0%
!! ACAAAAATAAAGAAATACTA+TGG - chr4.3:82087920-82087939 MS.gene037540:intron 15.0%
!! CAAAAATAAAGAAATACTAT+GGG - chr4.3:82087921-82087940 MS.gene037540:intron 15.0%
!! TTAAATCTTTCAAATATGAA+AGG + chr4.3:82089188-82089207 None:intergenic 15.0%
!!! ATTTATGTATATCTATTTTG+TGG - chr4.3:82087314-82087333 MS.gene037540:CDS 15.0%
!!! ATTTTGTTCATTTTTTGATA+AGG - chr4.3:82087188-82087207 MS.gene037540:CDS 15.0%
!!! TTTTGTTCATTTTTTGATAA+GGG - chr4.3:82087189-82087208 MS.gene037540:CDS 15.0%
!! AAGAGAATAATACACAAAAT+GGG - chr4.3:82086922-82086941 MS.gene037540:CDS 20.0%
!! AATAGATATACATAAATGTG+GGG + chr4.3:82087311-82087330 None:intergenic 20.0%
!! AATATCAAATAATAGTCGTA+TGG + chr4.3:82088095-82088114 None:intergenic 20.0%
!! AATTAACAAATTCAATGCAA+TGG + chr4.3:82087727-82087746 None:intergenic 20.0%
!! ATTAACAAATTCAATGCAAT+GGG + chr4.3:82087726-82087745 None:intergenic 20.0%
!! TAATTAAAAAAATTGCATCC+TGG - chr4.3:82088175-82088194 MS.gene037540:intron 20.0%
!! TTGTTAATTTCACAATCATT+TGG - chr4.3:82087738-82087757 MS.gene037540:intron 20.0%
!!! AACTTTTAGTTGAAATCTAA+AGG - chr4.3:82087999-82088018 MS.gene037540:intron 20.0%
!!! AGTGAAAGAATGAAAATTTT+TGG + chr4.3:82087286-82087305 None:intergenic 20.0%
!!! GTGAAAGAATGAAAATTTTT+GGG + chr4.3:82087285-82087304 None:intergenic 20.0%
!!! TTTTTTTGTTAGAAAACATG+TGG - chr4.3:82088338-82088357 MS.gene037540:intron 20.0%
! ACAAAGTATGATAGAGTATA+AGG - chr4.3:82088142-82088161 MS.gene037540:intron 25.0%
! ACAAGAAAAAGCAATACTAT+GGG - chr4.3:82087964-82087983 MS.gene037540:intron 25.0%
! ACTACATATTACTATGGTAT+AGG - chr4.3:82088943-82088962 MS.gene037540:intron 25.0%
! AGAGAATAATACACAAAATG+GGG - chr4.3:82086923-82086942 MS.gene037540:CDS 25.0%
! ATACCATAGTAATATGTAGT+GGG + chr4.3:82088943-82088962 None:intergenic 25.0%
! ATAGATATACATAAATGTGG+GGG + chr4.3:82087310-82087329 None:intergenic 25.0%
! ATCTCAATTCAAATGATGTT+TGG - chr4.3:82086688-82086707 MS.gene037540:CDS 25.0%
! CAAGAGAATAATACACAAAA+TGG - chr4.3:82086921-82086940 MS.gene037540:CDS 25.0%
! CATTTACCAAACATTCTTAT+CGG + chr4.3:82088033-82088052 None:intergenic 25.0%
! CTACATATTACTATGGTATA+GGG - chr4.3:82088944-82088963 MS.gene037540:intron 25.0%
! GCAAAAAATGTATTTGTCAA+AGG + chr4.3:82088562-82088581 None:intergenic 25.0%
! TACAAGAAAAAGCAATACTA+TGG - chr4.3:82087963-82087982 MS.gene037540:intron 25.0%
! TATACCATAGTAATATGTAG+TGG + chr4.3:82088944-82088963 None:intergenic 25.0%
!! ACTTTGAAAAAAGTTGATTC+TGG + chr4.3:82089422-82089441 None:intergenic 25.0%
!! ATTTGAATTGAGATTTTGGA+CGG + chr4.3:82086682-82086701 None:intergenic 25.0%
!! CATCATTTGAATTGAGATTT+TGG + chr4.3:82086686-82086705 None:intergenic 25.0%
!!! AAAAAAGTTGATTCTGGTTT+AGG + chr4.3:82089416-82089435 None:intergenic 25.0%
!!! AATGAAAATTTTTGGGCTTT+TGG + chr4.3:82087278-82087297 None:intergenic 25.0%
!!! AGTATTGCTTTTTCTTGTAT+TGG + chr4.3:82087962-82087981 None:intergenic 25.0%
!!! ATGAAAATTTTTGGGCTTTT+GGG + chr4.3:82087277-82087296 None:intergenic 25.0%
!!! GTATTGCTTTTTCTTGTATT+GGG + chr4.3:82087961-82087980 None:intergenic 25.0%
AAAATCGCAATCAAAATCGA+AGG + chr4.3:82087492-82087511 None:intergenic 30.0%
AGAAAATGGATCATTGTTTC+TGG - chr4.3:82086956-82086975 MS.gene037540:CDS 30.0%
ATAATCTTTGCAGAAACCAA+TGG - chr4.3:82088706-82088725 MS.gene037540:intron 30.0%
CACACAAAAAACTTACTTGA+TGG + chr4.3:82086807-82086826 None:intergenic 30.0%
GTGAATAAGCAGTAAATTCA+AGG + chr4.3:82087865-82087884 None:intergenic 30.0%
TACTGCTTATTCACCTTAAA+GGG - chr4.3:82087871-82087890 MS.gene037540:intron 30.0%
TTACTGCTTATTCACCTTAA+AGG - chr4.3:82087870-82087889 MS.gene037540:intron 30.0%
TTAGTCTCTTTGATTCACTT+TGG - chr4.3:82089304-82089323 MS.gene037540:CDS 30.0%
! AAATCGAAGGATTTTACTCA+AGG + chr4.3:82087479-82087498 None:intergenic 30.0%
! AAATGTTAGTGGACAAACAA+AGG - chr4.3:82086481-82086500 MS.gene037540:CDS 30.0%
! ATTTTTGTCAATTAGCCAAG+TGG + chr4.3:82087908-82087927 None:intergenic 30.0%
! TGGTAATTTGTACAAAAGTG+TGG - chr4.3:82088819-82088838 MS.gene037540:intron 30.0%
! TTTGTCCACTAACATTTTGA+GGG + chr4.3:82086478-82086497 None:intergenic 30.0%
!! AAGAAAGTGGTTTTACTCTT+AGG + chr4.3:82089155-82089174 None:intergenic 30.0%
!! ATAGGATTTTGCCTGTTTTT+GGG + chr4.3:82087097-82087116 None:intergenic 30.0%
!! ATGGTATTGATTCTGATTGT+TGG + chr4.3:82086629-82086648 None:intergenic 30.0%
!! CTTTTGGGTATTTATAGAAC+GGG + chr4.3:82087262-82087281 None:intergenic 30.0%
!! GCTTTTGGGTATTTATAGAA+CGG + chr4.3:82087263-82087282 None:intergenic 30.0%
!! GTGTTTTTGATAACAATGCT+TGG + chr4.3:82087005-82087024 None:intergenic 30.0%
!!! AAGGAACAAAGTTGTTTTTG+TGG - chr4.3:82086500-82086519 MS.gene037540:CDS 30.0%
!!! AGGATTTTGATGGATTTTGA+AGG - chr4.3:82087165-82087184 MS.gene037540:CDS 30.0%
AACACCACCATATTAGAGTA+AGG - chr4.3:82088284-82088303 MS.gene037540:intron 35.0%
AACGGGTCATAGATTCAAAT+CGG + chr4.3:82087245-82087264 None:intergenic 35.0%
AATCGGATCAATTTACGAAC+CGG + chr4.3:82087228-82087247 None:intergenic 35.0%
AATGCTTCACATGGATTTCT+GGG + chr4.3:82086747-82086766 None:intergenic 35.0%
AATTCCCCTCAAAATGTTAG+TGG - chr4.3:82086470-82086489 MS.gene037540:CDS 35.0%
ACAAAACATTGGCAAACAAG+AGG - chr4.3:82087654-82087673 MS.gene037540:intron 35.0%
AGAAATCCATTCAAAATCGC+AGG - chr4.3:82087145-82087164 MS.gene037540:CDS 35.0%
AGAGCAGCATTATATGGTAT+AGG - chr4.3:82089123-82089142 MS.gene037540:CDS 35.0%
AGCAAAATCCTTGATTGCAA+TGG - chr4.3:82089050-82089069 MS.gene037540:intron 35.0%
AGGAAAGAATCAGAAGAAAG+TGG + chr4.3:82089168-82089187 None:intergenic 35.0%
AGGAGTGATTTCTAAGTCTA+AGG - chr4.3:82089014-82089033 MS.gene037540:intron 35.0%
CTAGTGACCTTACTCTAATA+TGG + chr4.3:82088294-82088313 None:intergenic 35.0%
GAAGTCAACAAAATCTCCAT+TGG + chr4.3:82088725-82088744 None:intergenic 35.0%
GAAGTGAAGGTGATAAGTAT+TGG - chr4.3:82089228-82089247 MS.gene037540:CDS 35.0%
GACTTTACTTCAAGTCGAAA+GGG + chr4.3:82087536-82087555 None:intergenic 35.0%
GGAGTGATTTCTAAGTCTAA+GGG - chr4.3:82089015-82089034 MS.gene037540:intron 35.0%
TAATAGACAGCCTAAGAACT+TGG - chr4.3:82086887-82086906 MS.gene037540:CDS 35.0%
TAGAAAACATGTGGTTTCAG+CGG - chr4.3:82088347-82088366 MS.gene037540:intron 35.0%
TCAAGATTTACCTTGACTAG+TGG - chr4.3:82089368-82089387 MS.gene037540:CDS 35.0%
TCGTTGTAGGATAGAAAAGT+CGG + chr4.3:82087444-82087463 None:intergenic 35.0%
TTCACTTCAAGATCATCAAG+AGG + chr4.3:82089216-82089235 None:intergenic 35.0%
TTCTTAGGCTGTCTATTAGT+GGG + chr4.3:82086885-82086904 None:intergenic 35.0%
TTGATGTCAAGAATGCTTGA+AGG + chr4.3:82089352-82089371 None:intergenic 35.0%
TTTCTGATGTTGTCAAGGAA+TGG + chr4.3:82086648-82086667 None:intergenic 35.0%
! AATTGAGATTTTGGACGGTA+CGG + chr4.3:82086677-82086696 None:intergenic 35.0%
! ATTGTTGTTGTTATTCCTGG+TGG + chr4.3:82086604-82086623 None:intergenic 35.0%
! CAAAATCCTGCGATTTTGAA+TGG + chr4.3:82087154-82087173 None:intergenic 35.0%
! GACTTTTGTAGAATCGTTGT+AGG + chr4.3:82087457-82087476 None:intergenic 35.0%
! GATAGGATTTTGCCTGTTTT+TGG + chr4.3:82087098-82087117 None:intergenic 35.0%
! GTCATTGTTGTTGTTATTCC+TGG + chr4.3:82086607-82086626 None:intergenic 35.0%
! GTTTGTCCACTAACATTTTG+AGG + chr4.3:82086479-82086498 None:intergenic 35.0%
! TCAAAATCGCAGGATTTTGA+TGG - chr4.3:82087155-82087174 MS.gene037540:CDS 35.0%
! TCTTGATGATCTTGAAGTGA+AGG - chr4.3:82089215-82089234 MS.gene037540:CDS 35.0%
! TGATCACAACTTAGTTGGTA+GGG - chr4.3:82087803-82087822 MS.gene037540:intron 35.0%
! TTCAGATTTGGCTCAAATAG+AGG - chr4.3:82087624-82087643 MS.gene037540:intron 35.0%
! TTGTCCACTAACATTTTGAG+GGG + chr4.3:82086477-82086496 None:intergenic 35.0%
!! CGATTTTGTGCGATTTTGAT+AGG + chr4.3:82087115-82087134 None:intergenic 35.0%
!! TAAGCACCGATAAGAATGTT+TGG - chr4.3:82088024-82088043 MS.gene037540:intron 35.0%
AAAAATTGCATCCTGGCACA+AGG - chr4.3:82088182-82088201 MS.gene037540:intron 40.0%
AACAGCATTTGTTTGCAGAC+AGG + chr4.3:82086720-82086739 None:intergenic 40.0%
AAGTAAGTCACAGACGAACT+TGG + chr4.3:82087580-82087599 None:intergenic 40.0%
ACACGTCCAGCAAAAGAATT+AGG + chr4.3:82088799-82088818 None:intergenic 40.0%
AGAGGTTTCTGATGTTGTCA+AGG + chr4.3:82086653-82086672 None:intergenic 40.0%
AGCTTGCACCGTTATATAGA+GGG - chr4.3:82088991-82089010 MS.gene037540:intron 40.0%
AGCTTTACAACGGATCCTAA+TGG + chr4.3:82088769-82088788 None:intergenic 40.0%
AGGTCGGTTATCTTTGTTCT+TGG + chr4.3:82088593-82088612 None:intergenic 40.0%
ATCATCTCTTGATCCGTTGA+GGG + chr4.3:82089085-82089104 None:intergenic 40.0%
ATCCAATTTCCTGTTGTCAC+TGG + chr4.3:82088653-82088672 None:intergenic 40.0%
ATCGGATCAATTTACGAACC+GGG + chr4.3:82087227-82087246 None:intergenic 40.0%
ATTCACTTTGGTTGTTGTGC+AGG - chr4.3:82089316-82089335 MS.gene037540:CDS 40.0%
ATTTGTCAAAGGCTCATCAG+AGG + chr4.3:82088551-82088570 None:intergenic 40.0%
CAAGGTTCAAACACCAACTA+CGG + chr4.3:82087847-82087866 None:intergenic 40.0%
CAATGCTTCACATGGATTTC+TGG + chr4.3:82086748-82086767 None:intergenic 40.0%
CAGAATCTTGATTGTACCTG+TGG - chr4.3:82086855-82086874 MS.gene037540:CDS 40.0%
CATAGCAAAGTCCCAAAAAC+AGG - chr4.3:82087083-82087102 MS.gene037540:CDS 40.0%
CCACCCACTACATATTACTA+TGG - chr4.3:82088937-82088956 MS.gene037540:intron 40.0%
CCTAAGAACTTGGATTCTGA+GGG - chr4.3:82086897-82086916 MS.gene037540:CDS 40.0%
CGTTGTAGGATAGAAAAGTC+GGG + chr4.3:82087443-82087462 None:intergenic 40.0%
CTACGTGAATACTCTGTCTT+AGG + chr4.3:82088973-82088992 None:intergenic 40.0%
CTCTGTGATCACAACTTAGT+TGG - chr4.3:82087798-82087817 MS.gene037540:intron 40.0%
CTTCAAGATCATCAAGAGGA+AGG + chr4.3:82089212-82089231 None:intergenic 40.0%
GAGGAAGTCACACAAAACAT+TGG - chr4.3:82087643-82087662 MS.gene037540:intron 40.0%
GCACCAAGGTTATCAAAATC+GGG + chr4.3:82087558-82087577 None:intergenic 40.0%
GGACTTTACTTCAAGTCGAA+AGG + chr4.3:82087537-82087556 None:intergenic 40.0%
GGCACCAAGGTTATCAAAAT+CGG + chr4.3:82087559-82087578 None:intergenic 40.0%
GGGGTCTTTGTAAGAGAAAA+TGG - chr4.3:82086942-82086961 MS.gene037540:CDS 40.0%
GTCTTTAAGTCCACTAGTCA+AGG + chr4.3:82089381-82089400 None:intergenic 40.0%
GTGAAGAGAGCAGCATTATA+TGG - chr4.3:82089117-82089136 MS.gene037540:CDS 40.0%
GTGACCTTACTCTAATATGG+TGG + chr4.3:82088291-82088310 None:intergenic 40.0%
GTGATCACAACTTAGTTGGT+AGG - chr4.3:82087802-82087821 MS.gene037540:intron 40.0%
GTTCTTAGGCTGTCTATTAG+TGG + chr4.3:82086886-82086905 None:intergenic 40.0%
TCACTCCTCCCTCTATATAA+CGG + chr4.3:82089002-82089021 None:intergenic 40.0%
TCGAAAGGGAGTAGCAAAAT+CGG + chr4.3:82087522-82087541 None:intergenic 40.0%
TTCATGCACAATGCTTCACA+TGG + chr4.3:82086756-82086775 None:intergenic 40.0%
TTGAACTTCCGGAATGTTGA+GGG + chr4.3:82088914-82088933 None:intergenic 40.0%
! AATTCTTTTGCTGGACGTGT+TGG - chr4.3:82088799-82088818 MS.gene037540:intron 40.0%
! AGTCGCAAAAACCAGGATTT+TGG + chr4.3:82087038-82087057 None:intergenic 40.0%
! CCATAGTAATATGTAGTGGG+TGG + chr4.3:82088940-82088959 None:intergenic 40.0%
! GCTGGTTTAGACAACTAAAC+TGG + chr4.3:82088891-82088910 None:intergenic 40.0%
! GGAATTGGGGTATTCAGATT+TGG - chr4.3:82087612-82087631 MS.gene037540:intron 40.0%
! GTACAAAAGTGTGGAGAACT+TGG - chr4.3:82088828-82088847 MS.gene037540:intron 40.0%
! GTCGCAAAAACCAGGATTTT+GGG + chr4.3:82087037-82087056 None:intergenic 40.0%
! TAAGGGTCAATTTTCTGACC+CGG - chr4.3:82087206-82087225 MS.gene037540:CDS 40.0%
! TAGCTTGCACCGTTATATAG+AGG - chr4.3:82088990-82089009 MS.gene037540:intron 40.0%
! TTGCAGCTGTTGATGGAATT+GGG - chr4.3:82087598-82087617 MS.gene037540:intron 40.0%
!! AGTCCCGATTTTGATAACCT+TGG - chr4.3:82087552-82087571 MS.gene037540:intron 40.0%
!! GAAAGTGTCAACAAAGTCCT+TGG + chr4.3:82086532-82086551 None:intergenic 40.0%
!! GATAAGTATTGGTGAAGCTG+AGG - chr4.3:82089239-82089258 MS.gene037540:CDS 40.0%
!! TAGTAATATGTAGTGGGTGG+TGG + chr4.3:82088937-82088956 None:intergenic 40.0%
!! TGTTTTTGTGGAAGCAACCA+AGG - chr4.3:82086512-82086531 MS.gene037540:CDS 40.0%
!!! CTGTTTTTGGGACTTTGCTA+TGG + chr4.3:82087085-82087104 None:intergenic 40.0%
!!! TCTATTAGTGGGTTTTCCAC+AGG + chr4.3:82086874-82086893 None:intergenic 40.0%
AAGGAAATCCATCGTAACCC+TGG + chr4.3:82088408-82088427 None:intergenic 45.0%
AGCTTCCTATCTCTTCCACT+TGG - chr4.3:82086555-82086574 MS.gene037540:intron 45.0%
AGCTTCCTTACCATGCCATT+AGG - chr4.3:82088751-82088770 MS.gene037540:intron 45.0%
AGGTCCGAGAAGCTTTACAA+CGG + chr4.3:82088779-82088798 None:intergenic 45.0%
AGGTTAAGGTATGCTTGAGG+AGG + chr4.3:82088531-82088550 None:intergenic 45.0%
CAAAGGCTCATCAGAGGTTA+AGG + chr4.3:82088545-82088564 None:intergenic 45.0%
CACCAGTGACAACAGGAAAT+TGG - chr4.3:82088648-82088667 MS.gene037540:intron 45.0%
CAGAGGTTAAGGTATGCTTG+AGG + chr4.3:82088534-82088553 None:intergenic 45.0%
CATCATCTCTTGATCCGTTG+AGG + chr4.3:82089086-82089105 None:intergenic 45.0%
CCCTCAGAATCCAAGTTCTT+AGG + chr4.3:82086900-82086919 None:intergenic 45.0%
CGAAAGGGAGTAGCAAAATC+GGG + chr4.3:82087521-82087540 None:intergenic 45.0%
CGACTTAAGTCCCAAAATCC+TGG - chr4.3:82087024-82087043 MS.gene037540:CDS 45.0%
CTAAACTGGTGTGCTATACC+AGG + chr4.3:82088877-82088896 None:intergenic 45.0%
CTCTAACTGCTGATGCAAGT+TGG + chr4.3:82088618-82088637 None:intergenic 45.0%
CTGGTTTAGGCACACTCAAA+AGG + chr4.3:82089403-82089422 None:intergenic 45.0%
GACTTACTTGCAGCTGTTGA+TGG - chr4.3:82087591-82087610 MS.gene037540:intron 45.0%
GATCGAGTAACACAGACATG+CGG + chr4.3:82088855-82088874 None:intergenic 45.0%
GCCTAAGAACTTGGATTCTG+AGG - chr4.3:82086896-82086915 MS.gene037540:CDS 45.0%
GGATCAAGAGATGATGCTAC+TGG - chr4.3:82089090-82089109 MS.gene037540:CDS 45.0%
GGATCCGTTGTAAAGCTTCT+CGG - chr4.3:82088772-82088791 MS.gene037540:intron 45.0%
GTTGAACTTCCGGAATGTTG+AGG + chr4.3:82088915-82088934 None:intergenic 45.0%
TACAACGGATCCTAATGGCA+TGG + chr4.3:82088764-82088783 None:intergenic 45.0%
TACGCAAAGTCGCAAAAACC+AGG + chr4.3:82087045-82087064 None:intergenic 45.0%
TCAGAGGAAATTCCACTCCA+GGG - chr4.3:82088388-82088407 MS.gene037540:intron 45.0%
TCTCGGTTCCATTGCAATCA+AGG + chr4.3:82089061-82089080 None:intergenic 45.0%
TGAACTTCCGGAATGTTGAG+GGG + chr4.3:82088913-82088932 None:intergenic 45.0%
TTGCACCGTTATATAGAGGG+AGG - chr4.3:82088994-82089013 MS.gene037540:intron 45.0%
TTGGTGAAGCTGAGGTAATG+TGG - chr4.3:82089247-82089266 MS.gene037540:CDS 45.0%
! ACTGAAGCATCTCTTCTCAG+AGG - chr4.3:82088372-82088391 MS.gene037540:intron 45.0%
! ATGTCTGTGTTACTCGATCC+TGG - chr4.3:82088856-82088875 MS.gene037540:intron 45.0%
! CTCGGACCTAATTCTTTTGC+TGG - chr4.3:82088790-82088809 MS.gene037540:intron 45.0%
! CTTGCAGCTGTTGATGGAAT+TGG - chr4.3:82087597-82087616 MS.gene037540:intron 45.0%
! GTTGTTGTTATTCCTGGTGG+TGG + chr4.3:82086601-82086620 None:intergenic 45.0%
! TGCAGCTGTTGATGGAATTG+GGG - chr4.3:82087599-82087618 MS.gene037540:intron 45.0%
!! ACTGCTGATGCAAGTTGGTT+AGG + chr4.3:82088613-82088632 None:intergenic 45.0%
!! CTGATGCAAGTTGGTTAGGT+CGG + chr4.3:82088609-82088628 None:intergenic 45.0%
!! TATTCCTGGTGGTGGCTAAA+AGG + chr4.3:82086593-82086612 None:intergenic 45.0%
!!! TATTATTTGATATTTTATAA+TGG - chr4.3:82088101-82088120 MS.gene037540:intron 5.0%
AAACCAGCCCCTCAACATTC+CGG - chr4.3:82088903-82088922 MS.gene037540:intron 50.0%
AATCCATCGTAACCCTGGAG+TGG + chr4.3:82088403-82088422 None:intergenic 50.0%
ACAAGGTGTGCAAGGATGAC+AGG - chr4.3:82088199-82088218 MS.gene037540:intron 50.0%
ATGGAACCGAGATCCCTCAA+CGG - chr4.3:82089069-82089088 MS.gene037540:intron 50.0%
ATTCCACTCCAGGGTTACGA+TGG - chr4.3:82088397-82088416 MS.gene037540:intron 50.0%
CAAGGTGTGCAAGGATGACA+GGG - chr4.3:82088200-82088219 MS.gene037540:intron 50.0%
CGGATCCTAATGGCATGGTA+AGG + chr4.3:82088759-82088778 None:intergenic 50.0%
CTCAGAGGAAATTCCACTCC+AGG - chr4.3:82088387-82088406 MS.gene037540:intron 50.0%
CTTGATCCGTTGAGGGATCT+CGG + chr4.3:82089078-82089097 None:intergenic 50.0%
GCATAGCAACATGCCGTAGT+TGG - chr4.3:82087831-82087850 MS.gene037540:intron 50.0%
GGCTAGAGTCTCACCCTTTA+AGG + chr4.3:82087887-82087906 None:intergenic 50.0%
TTCCTGTTGTCACTGGTGCA+AGG + chr4.3:82088646-82088665 None:intergenic 50.0%
! GATTTTGGACGGTACGGTAG+AGG + chr4.3:82086671-82086690 None:intergenic 50.0%
! TGGTGCCAAGTGGAAGAGAT+AGG + chr4.3:82086563-82086582 None:intergenic 50.0%
AGGGTGAGACTCTAGCCACT+TGG - chr4.3:82087890-82087909 MS.gene037540:intron 55.0%
ATCCTGGCACAAGGTGTGCA+AGG - chr4.3:82088191-82088210 MS.gene037540:intron 55.0%
ATCCTTGCACACCTTGTGCC+AGG + chr4.3:82088196-82088215 None:intergenic 55.0%
CACAGACGAACTTGGCACCA+AGG + chr4.3:82087572-82087591 None:intergenic 55.0%
GGTGGCTAAAAGGCGAACGA+TGG + chr4.3:82086583-82086602 None:intergenic 55.0%
TGCCTTGCACCAGTGACAAC+AGG - chr4.3:82088641-82088660 MS.gene037540:intron 55.0%
! GTGGGTGGTGGTTGAACTTC+CGG + chr4.3:82088925-82088944 None:intergenic 55.0%
! TTCGCCTTTTAGCCACCACC+AGG - chr4.3:82086586-82086605 MS.gene037540:intron 55.0%
CTTCCGGAATGTTGAGGGGC+TGG + chr4.3:82088909-82088928 None:intergenic 60.0%
! AGGCGAACGATGGTGCCAAG+TGG + chr4.3:82086573-82086592 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.3 gene 82086435 82089457 82086435 ID=MS.gene037540
chr4.3 mRNA 82086435 82089457 82086435 ID=MS.gene037540.t1;Parent=MS.gene037540
chr4.3 exon 82089082 82089457 82089082 ID=MS.gene037540.t1.exon1;Parent=MS.gene037540.t1
chr4.3 CDS 82089082 82089457 82089082 ID=cds.MS.gene037540.t1;Parent=MS.gene037540.t1
chr4.3 exon 82088217 82088263 82088217 ID=MS.gene037540.t1.exon2;Parent=MS.gene037540.t1
chr4.3 CDS 82088217 82088263 82088217 ID=cds.MS.gene037540.t1;Parent=MS.gene037540.t1
chr4.3 exon 82086632 82087372 82086632 ID=MS.gene037540.t1.exon3;Parent=MS.gene037540.t1
chr4.3 CDS 82086632 82087372 82086632 ID=cds.MS.gene037540.t1;Parent=MS.gene037540.t1
chr4.3 exon 82086435 82086554 82086435 ID=MS.gene037540.t1.exon4;Parent=MS.gene037540.t1
chr4.3 CDS 82086435 82086554 82086435 ID=cds.MS.gene037540.t1;Parent=MS.gene037540.t1
Gene Sequence

>MS.gene037540

ATGGCTTCTGAACAGCTACAAAAAGATAAAAGAACAATTCCCCTCAAAATGTTAGTGGACAAACAAAGGAACAAAGTTGTTTTTGTGGAAGCAACCAAGGACTTTGTTGACACTTTCTTCAGCTTCCTATCTCTTCCACTTGGCACCATCGTTCGCCTTTTAGCCACCACCAGGAATAACAACAACAATGACCAACAATCAGAATCAATACCATTCCTTGACAACATCAGAAACCTCTACCGTACCGTCCAAAATCTCAATTCAAATGATGTTTGGAACAATCCTGTCTGCAAACAAATGCTGTTGCATCCCAGAAATCCATGTGAAGCATTGTGCATGAAGCTGTTCTTGAATGTTGATGACACTGAGCCATCAAGTAAGTTTTTTGTGTGTGATACTTGCTACAAGTTTACTACTTTTCAGAATCTTGATTGTACCTGTGGAAAACCCACTAATAGACAGCCTAAGAACTTGGATTCTGAGGGTCAAGAGAATAATACACAAAATGGGGTCTTTGTAAGAGAAAATGGATCATTGTTTCTGGTGTCTGATGATTTGAAGATTGTGCCAAGCATTGTTATCAAAAACACGACTTAAGTCCCAAAATCCTGGTTTTTGCGACTTTGCGTAGCTTCAACGACTCAAATCCATAGCAAAGTCCCAAAAACAGGCAAAATCCTATCAAAATCGCACAAAATCGCACAAAATCGAGAAATCCATTCAAAATCGCAGGATTTTGATGGATTTTGAAGGATTTTGTTCATTTTTTGATAAGGGTCAATTTTCTGACCCGGTTCGTAAATTGATCCGATTTGAATCTATGACCCGTTCTATAAATACCCAAAAGCCCAAAAATTTTCATTCTTTCACTTCCCCCACATTTATGTATATCTATTTTGTGGACTTTGAACTTTAGTCATTTATGACTATATGCAATTTATAACATATATTTAACATTATTTTTGTTTTGGTAGAATCATCGATTTTGATTACGATTTTACGAGTCCCGACTTTTCTATCCTACAACGATTCTACAAAAGTCCTTGAGTAAAATCCTTCGATTTTGATTGCGATTTTACGAGTCCCGATTTTGCTACTCCCTTTCGACTTGAAGTAAAGTCCCGATTTTGATAACCTTGGTGCCAAGTTCGTCTGTGACTTACTTGCAGCTGTTGATGGAATTGGGGTATTCAGATTTGGCTCAAATAGAGGAAGTCACACAAAACATTGGCAAACAAGAGGTAATGCTTTTTGTCTTTGATCTGTATCTATCTCACAATTATCAGCTCCCATTGCATTGAATTTGTTAATTTCACAATCATTTGGATGCAATTTTTTACAAGCAAAAGAGAATATATTAAATCTCTGTGATCACAACTTAGTTGGTAGGGACAACGCATAGCAACATGCCGTAGTTGGTGTTTGAACCTTGAATTTACTGCTTATTCACCTTAAAGGGTGAGACTCTAGCCACTTGGCTAATTGACAAAAATAAAGAAATACTATGGGCATTAGTACTTCAACCCAATACAAGAAAAAGCAATACTATGGGCATGTTTCGATTAACTTTTAGTTGAAATCTAAAGGCATAAGCACCGATAAGAATGTTTGGTAAATGTTATGAAAGTAGCTTATGACAAATCTATAAGAATGTTTTCCATACGACTATTATTTGATATTTTATAATGGATTAATTTGAGAGAGTATACAAAGTATGATAGAGTATAAGGATGTTTGAGTTAATTAAAAAAATTGCATCCTGGCACAAGGTGTGCAAGGATGACAGGGTATACAAAGTAATATTCAAAAAGAGCATTAAAACTAAAAAAATATCAGTACTAAAGATTACAACACCACCATATTAGAGTAAGGTCACTAGATGAGTAGATAAGATCGTTCTGCATTTTTTTGTTAGAAAACATGTGGTTTCAGCGGTTACTGAAGCATCTCTTCTCAGAGGAAATTCCACTCCAGGGTTACGATGGATTTCCTTTCTTTAATAGATCTATTTTCAATAAATAATATAATTTATTCTTCTTTGTTGTATTGTTATGCTTACTATTTGTGTTTTAACATATTCTATAGATATTGAACCTCCTCAAGCATACCTTAACCTCTGATGAGCCTTTGACAAATACATTTTTTGCAAGTAGCTCCAAGAACAAAGATAACCGACCTAACCAACTTGCATCAGCAGTTAGAGCAATGCCTTGCACCAGTGACAACAGGAAATTGGATGTTAAAGTAATTCAAAGTAAATTTCAAAAAAATATAATCTTTGCAGAAACCAATGGAGATTTTGTTGACTTCATTTTTAGCTTCCTTACCATGCCATTAGGATCCGTTGTAAAGCTTCTCGGACCTAATTCTTTTGCTGGACGTGTTGGTAATTTGTACAAAAGTGTGGAGAACTTGGACCGCATGTCTGTGTTACTCGATCCTGGTATAGCACACCAGTTTAGTTGTCTAAACCAGCCCCTCAACATTCCGGAAGTTCAACCACCACCCACTACATATTACTATGGTATAGGGACACCTAAGACAGAGTATTCACGTAGCTTGCACCGTTATATAGAGGGAGGAGTGATTTCTAAGTCTAAGGGATCAATTTATAAAGCAAAATCCTTGATTGCAATGGAACCGAGATCCCTCAACGGATCAAGAGATGATGCTACTGGATTTGTGAAGAGAGCAGCATTATATGGTATAGGAGATGACCTAAGAGTAAAACCACTTTCTTCTGATTCTTTCCTTTCATATTTGAAAGATTTAAGCCTTCCTCTTGATGATCTTGAAGTGAAGGTGATAAGTATTGGTGAAGCTGAGGTAATGTGGCTATTATTTATCACAAAATAATTTGTTTGTTATTTTAGTCTCTTTGATTCACTTTGGTTGTTGTGCAGGCTTTGAACTTCCTTCAAGCATTCTTGACATCAAGATTTACCTTGACTAGTGGACTTAAAGACCTTTTGAGTGTGCCTAAACCAGAATCAACTTTTTTCAAAGTTCCTAAAAAAGAATGA
Protein sequence

>MS.gene037540.t1

MASEQLQKDKRTIPLKMLVDKQRNKVVFVEATKDFVDTFFSFLSLPLGTIVRLLATTRNNNNNDQQSESIPFLDNIRNLYRTVQNLNSNDVWNNPVCKQMLLHPRNPCEALCMKLFLNVDDTEPSNLAQIEEVTQNIGKQEILNLLKHTLTSDEPLTNTFFASSSKNKDNRPNQLASAVRAMPCTSDNRKLDVKVIQSKFQKNIIFAETNGDFVDFIFSFLTMPLGSVVKLLGPNSFAGRVGNLYKSVENLDRMSVLLDPGIAHQFSCLNQPLNIPEVQPPPTTYYYGIGTPKTEYSRSLHRYIEGGVISKSKGSIYKAKSLIAMEPRSLNGSRDDATGFVKRAALYGIGDDLRVKPLSSDSFLSYLKDLSLPLDDLEVKVISIGEAEALNFLQAFLTSRFTLTSGLKDLLSVPKPESTFFKVPKKE