AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94765

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94765.t1 MTR_7g066340 93.908 476 29 0 1 476 1 476 0.0 907
MS.gene94765.t1 MTR_7g066310 71.581 468 68 4 9 476 4 406 0.0 646
MS.gene94765.t1 MTR_7g066350 66.447 456 137 8 1 450 1 446 0.0 577
MS.gene94765.t1 MTR_7g066280 67.890 436 67 3 91 476 1 413 0.0 567
MS.gene94765.t1 MTR_1g041315 63.170 448 143 7 7 437 9 451 0.0 531
MS.gene94765.t1 MTR_7g066260 58.197 488 183 7 6 476 9 492 0.0 523
MS.gene94765.t1 MTR_7g066400 57.602 467 148 8 1 450 1 434 2.82e-172 492
MS.gene94765.t1 MTR_7g066570 56.287 501 172 9 3 468 5 493 4.29e-171 494
MS.gene94765.t1 MTR_7g066360 55.236 487 185 11 6 475 8 478 5.28e-155 449
MS.gene94765.t1 MTR_7g012680 55.085 472 172 8 3 459 5 451 2.46e-152 441
MS.gene94765.t1 MTR_7g066290 54.978 462 159 8 6 454 9 434 1.00e-149 434
MS.gene94765.t1 MTR_7g058710 50.100 499 181 12 1 453 1 477 1.82e-144 422
MS.gene94765.t1 MTR_7g066580 47.780 473 170 9 22 453 5 441 3.09e-128 380
MS.gene94765.t1 MTR_7g066580 27.692 260 130 10 6 234 209 441 5.32e-12 68.2
MS.gene94765.t1 MTR_7g066430 43.205 493 224 11 12 456 4 488 1.61e-118 357
MS.gene94765.t1 MTR_7g066430 28.216 241 141 6 9 232 254 479 9.38e-15 77.0
MS.gene94765.t1 MTR_7g058700 47.333 450 162 8 24 455 531 923 2.71e-117 366
MS.gene94765.t1 MTR_2g029400 44.979 478 151 10 1 441 1 403 3.03e-114 343
MS.gene94765.t1 MTR_7g066410 41.061 509 225 13 13 453 11 512 1.21e-110 337
MS.gene94765.t1 MTR_7g066410 30.417 240 131 8 12 232 284 506 1.21e-18 89.0
MS.gene94765.t1 MTR_7g066480 40.798 451 215 8 11 453 15 421 1.25e-97 301
MS.gene94765.t1 MTR_7g062300 38.697 491 237 15 1 449 1 469 8.82e-94 292
MS.gene94765.t1 MTR_7g063900 40.909 506 234 17 1 462 1 485 8.83e-93 290
MS.gene94765.t1 MTR_7g066490 41.295 448 203 12 12 454 16 408 1.01e-91 285
MS.gene94765.t1 MTR_7g062280 37.822 505 242 15 1 453 1 485 2.88e-91 286
MS.gene94765.t1 MTR_7g063880 39.876 484 233 16 5 454 4 463 4.25e-89 280
MS.gene94765.t1 MTR_7g063660 36.688 477 255 11 11 453 8 471 5.45e-89 280
MS.gene94765.t1 MTR_7g063830 39.262 461 243 12 5 453 3 438 1.47e-88 278
MS.gene94765.t1 MTR_7g063820 37.449 486 257 9 5 453 3 478 5.50e-87 275
MS.gene94765.t1 MTR_7g063890 38.523 501 246 14 5 462 20 501 4.46e-82 263
MS.gene94765.t1 MTR_7g063890 25.541 231 134 6 254 447 13 242 2.67e-14 75.5
MS.gene94765.t1 MTR_7g063920 34.583 480 230 8 5 453 4 430 1.10e-81 260
MS.gene94765.t1 MTR_7g063840 35.950 484 262 13 1 453 1 467 2.73e-81 260
MS.gene94765.t1 MTR_3g007740 39.168 457 242 12 11 453 8 442 2.88e-79 254
MS.gene94765.t1 MTR_4g017830 34.030 526 271 15 1 464 1 512 8.95e-79 255
MS.gene94765.t1 MTR_4g019310 34.538 498 259 13 6 449 2 486 2.19e-78 253
MS.gene94765.t1 MTR_4g019310 28.631 241 144 9 8 235 262 487 3.45e-15 78.2
MS.gene94765.t1 MTR_3g065200 36.966 468 198 15 10 440 1 408 1.53e-76 247
MS.gene94765.t1 MTR_4g019340 35.356 478 247 12 13 442 39 502 3.23e-76 248
MS.gene94765.t1 MTR_4g019340 28.571 217 137 6 12 227 303 502 3.04e-15 78.6
MS.gene94765.t1 MTR_4g017440 33.205 518 271 14 3 459 5 508 8.01e-76 247
MS.gene94765.t1 MTR_1g014060 56.744 215 88 3 21 234 9 219 3.57e-71 231
MS.gene94765.t1 MTR_1g014060 48.000 175 77 2 293 453 210 384 1.27e-36 139
MS.gene94765.t1 MTR_7g066680 47.826 299 93 6 215 450 37 335 5.03e-71 229
MS.gene94765.t1 MTR_7g066680 26.484 219 142 7 6 217 80 286 1.36e-11 66.2
MS.gene94765.t1 MTR_4g017410 32.634 524 275 17 5 475 2 500 1.42e-70 233
MS.gene94765.t1 MTR_4g017610 33.198 494 265 16 2 450 3 476 2.05e-69 229
MS.gene94765.t1 MTR_7g063670 35.217 460 263 10 8 453 13 451 3.65e-67 223
MS.gene94765.t1 MTR_4g017470 30.000 530 264 11 1 468 1 485 9.61e-62 209
MS.gene94765.t1 MTR_4g017550 30.913 482 232 19 41 451 20 471 9.36e-50 177
MS.gene94765.t1 MTR_4g017550 27.273 242 132 7 12 231 247 466 3.18e-15 78.2
MS.gene94765.t1 MTR_7g066390 53.165 158 46 1 304 461 1 130 6.85e-45 154
MS.gene94765.t1 MTR_7g062270 41.935 186 100 4 1 184 1 180 7.91e-36 137
MS.gene94765.t1 MTR_7g063720 36.493 211 119 4 257 453 17 226 4.24e-34 128
MS.gene94765.t1 MTR_7g063720 28.295 258 144 12 3 254 17 239 2.26e-16 79.0
MS.gene94765.t1 MTR_2g067310 41.899 179 63 3 18 196 53 190 2.70e-29 115
MS.gene94765.t1 MTR_8g023240 25.498 502 300 15 13 471 38 508 5.47e-28 117
MS.gene94765.t1 MTR_1g115440 34.000 250 135 9 5 238 4 239 5.06e-27 109
MS.gene94765.t1 MTR_7g100420 33.038 339 176 11 147 453 78 397 2.05e-26 111
MS.gene94765.t1 MTR_7g100420 48.052 77 34 2 13 83 40 116 5.26e-11 64.7
MS.gene94765.t1 MTR_7g063850 29.766 299 159 8 186 453 4 282 5.92e-26 107
MS.gene94765.t1 MTR_8g445860 30.894 246 149 7 4 239 5 239 3.47e-25 103
MS.gene94765.t1 MTR_8g445860 29.911 224 116 6 261 446 11 231 6.01e-20 89.4
MS.gene94765.t1 MTR_7g063690 30.108 279 125 8 13 290 13 222 3.62e-23 98.6
MS.gene94765.t1 MTR_0150s0010 30.488 246 149 7 5 238 3 238 8.47e-22 94.7
MS.gene94765.t1 MTR_0150s0010 29.515 227 116 5 261 446 8 231 2.21e-19 87.8
MS.gene94765.t1 MTR_1g115455 28.958 259 134 8 5 239 2 234 5.27e-17 80.5
MS.gene94765.t1 MTR_4g019330 33.696 184 82 7 277 453 32 182 2.14e-16 77.8
MS.gene94765.t1 MTR_4g019240 39.806 103 54 3 3 97 4 106 5.02e-15 73.6
MS.gene94765.t1 MTR_1g115450 39.326 89 49 1 7 95 2 85 6.41e-13 66.6
MS.gene94765.t1 MTR_7g063760 46.970 66 34 1 389 453 2 67 6.85e-13 64.3
MS.gene94765.t1 MTR_0150s0030 38.043 92 51 2 6 96 2 88 1.65e-12 67.0
MS.gene94765.t1 MTR_1g115470 40.678 118 55 5 1 115 1 106 1.76e-12 69.7
MS.gene94765.t1 MTR_8g044880 38.144 97 54 2 6 101 2 93 3.36e-12 67.4
MS.gene94765.t1 MTR_8g445910 39.130 92 50 2 6 96 2 88 1.14e-11 65.5
MS.gene94765.t1 MTR_7g063870 54.545 55 25 0 6 60 25 79 3.00e-11 64.3
MS.gene94765.t1 MTR_8g445920 39.535 86 47 1 5 90 3 83 9.09e-11 59.3
MS.gene94765.t1 MTR_8g044890 39.535 86 47 1 5 90 3 83 9.09e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94765.t1 AT5G01120 30.724 511 293 16 13 475 10 507 1.64e-61 209
MS.gene94765.t1 AT3G09140 31.225 506 282 15 1 453 1 493 9.68e-60 204
MS.gene94765.t1 AT5G01140 30.556 504 289 11 1 475 1 472 7.02e-59 201
MS.gene94765.t1 AT5G43240 30.545 514 294 17 13 475 10 511 7.08e-58 199
MS.gene94765.t1 AT5G43240 30.545 514 294 17 13 475 10 511 7.08e-58 199
MS.gene94765.t1 AT5G43240 30.545 514 294 17 13 475 10 511 7.08e-58 199
MS.gene94765.t1 AT3G09140 29.511 532 285 15 1 453 1 521 1.12e-55 194
MS.gene94765.t1 AT5G01150 31.263 483 281 12 12 454 9 480 1.28e-53 188
MS.gene94765.t1 AT5G01130 30.835 467 286 11 1 453 1 444 3.39e-52 183
MS.gene94765.t1 AT3G09110 33.333 321 203 5 12 328 9 322 1.74e-51 178
MS.gene94765.t1 AT3G09120 31.776 321 193 8 11 317 5 313 5.37e-40 147
MS.gene94765.t1 AT3G09120 26.718 262 145 10 260 479 3 259 5.83e-13 70.1
MS.gene94765.t1 AT5G37320 26.804 485 296 15 13 453 10 479 2.28e-36 140
MS.gene94765.t1 AT5G43240 29.429 350 202 12 164 475 25 367 1.16e-25 108

Find 86 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGAACACCATTAACATTTA+TGG 0.167833 7.1:+35765497 MS.gene94765:CDS
CCATTTCCTCCACGTCATTA+AGG 0.184539 7.1:-35765593 None:intergenic
AATATTGAAGCTGTGAAATT+TGG 0.192769 7.1:+35764427 MS.gene94765:CDS
TTTCTACCTTTGGCTTCTTC+AGG 0.207589 7.1:-35766505 None:intergenic
GTCGGACTTTATATTTAAAA+AGG 0.210262 7.1:+35765038 MS.gene94765:CDS
CCAGCATATCCACCTGTAAT+AGG 0.242061 7.1:-35765477 None:intergenic
GGTACTGTTTGAGTTACTTT+AGG 0.248483 7.1:+35764650 MS.gene94765:CDS
AGCTTCTTATCATTGCCTTT+AGG 0.249361 7.1:+35764373 MS.gene94765:CDS
GCTTCTTATCATTGCCTTTA+GGG 0.256901 7.1:+35764374 MS.gene94765:CDS
AGCAAAAGATACCTCTTTCT+TGG 0.276786 7.1:-35764887 None:intergenic
CCACCTGTAATAGGGGATTT+AGG 0.282026 7.1:-35765468 None:intergenic
GTACTGTTTGAGTTACTTTA+GGG 0.283577 7.1:+35764651 MS.gene94765:CDS
ATTGAGTAGCATTTCCTTGC+AGG 0.290117 7.1:-35764512 None:intergenic
AAGAAGCCAAAGGTAGAAAA+AGG 0.313800 7.1:+35766509 MS.gene94765:CDS
AACCAATTGGAAGTTAATAT+TGG 0.317943 7.1:+35765090 MS.gene94765:CDS
CCCTTAGCACCACAACTCTA+AGG 0.318416 7.1:-35764294 None:intergenic
AAACTTGTCGTAACAACATT+TGG 0.329105 7.1:-35764793 None:intergenic
CGATTTCTTTACTCAAAATC+CGG 0.343240 7.1:-35764717 None:intergenic
TCTGTCACCATAAATGTTAA+TGG 0.349053 7.1:-35765504 None:intergenic
TTCTACCTTTGGCTTCTTCA+GGG 0.358571 7.1:-35766504 None:intergenic
ACTCAGCGGGTGCTTATTGC+TGG 0.359181 7.1:+35764542 MS.gene94765:CDS
TGATCTTCTCAAATTGTCAT+TGG 0.364877 7.1:+35764999 MS.gene94765:CDS
GAGGAAATGGTCGTTAATAT+TGG 0.365896 7.1:+35765606 MS.gene94765:CDS
GATCCTAAATCCCCTATTAC+AGG 0.369144 7.1:+35765465 MS.gene94765:CDS
CCCTTAGAGTTGTGGTGCTA+AGG 0.371577 7.1:+35764293 MS.gene94765:CDS
CAGCATATCCACCTGTAATA+GGG 0.383028 7.1:-35765476 None:intergenic
TGCAGGTATTAGACATGTTC+AGG 0.387295 7.1:+35766457 MS.gene94765:intron
AACGGCCTCAACCAGTTCAT+TGG 0.391379 7.1:+35765775 MS.gene94765:CDS
CATGTTTATATGTGGACAAT+AGG 0.397277 7.1:+35764629 MS.gene94765:CDS
CATTTCCTCCACGTCATTAA+GGG 0.403582 7.1:-35765592 None:intergenic
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.1:+35764814 MS.gene94765:CDS
GAGTTCAGATTGAGCAGAAA+TGG 0.407484 7.1:-35765376 None:intergenic
TTTAGTTCTAAGTAACCAAT+TGG 0.411255 7.1:+35765077 MS.gene94765:CDS
CCTTAATGACGTGGAGGAAA+TGG 0.412198 7.1:+35765593 MS.gene94765:CDS
AGAGGAAGAATCTGATGAAA+TGG 0.420787 7.1:+35765119 MS.gene94765:CDS
ATCTCGATACACAATATCTA+TGG 0.421075 7.1:+35764482 MS.gene94765:CDS
CTTGGTGATGTTGATATTGA+CGG 0.422369 7.1:-35764869 None:intergenic
TACCAATATTAACTTCCAAT+TGG 0.431128 7.1:-35765092 None:intergenic
AAGATATGAAATACCATCAA+TGG 0.434003 7.1:-35765553 None:intergenic
AAAGTTCTGTTTGCAGAGGC+AGG 0.454442 7.1:+35764325 MS.gene94765:CDS
GCAGAGGTAGTAGGACTTCA+AGG 0.456406 7.1:-35764596 None:intergenic
TAATATACTAACCAATGAAC+TGG 0.462240 7.1:-35765786 None:intergenic
TAAGCACCCGCTGAGTTGTT+CGG 0.463411 7.1:-35764535 None:intergenic
AATATGCAACACTGCTCCTA+AGG 0.469659 7.1:-35765238 None:intergenic
TCAAAATCTGCCTTGACAAA+CGG 0.470384 7.1:+35765757 MS.gene94765:CDS
CCTTAGAGTTGTGGTGCTAA+GGG 0.474165 7.1:+35764294 MS.gene94765:CDS
CCTATTACAGGTGGATATGC+TGG 0.481859 7.1:+35765477 MS.gene94765:CDS
TTCATATCTTGAAAGAATGA+AGG 0.484244 7.1:+35765566 MS.gene94765:CDS
AGCTTACAAAAGAGAATCCT+TGG 0.499942 7.1:-35765263 None:intergenic
TGAGTTCAGACAAGTGTTTG+AGG 0.508556 7.1:+35765319 MS.gene94765:CDS
CTACCTTTGGCTTCTTCAGG+GGG 0.513478 7.1:-35766502 None:intergenic
GATTTCTTTACTCAAAATCC+GGG 0.515721 7.1:-35764716 None:intergenic
CAAAGTTTCCCTTAGAGTTG+TGG 0.516766 7.1:+35764285 MS.gene94765:CDS
TTGAGCAGAAATGGTTGGAC+TGG 0.524156 7.1:-35765367 None:intergenic
TATCAACATCACCAAGAAAG+AGG 0.532453 7.1:+35764876 MS.gene94765:CDS
CTGGTTGAGGCCGTTTGTCA+AGG 0.537345 7.1:-35765767 None:intergenic
CCTTGCAAAACTTGTGGCTA+AGG 0.537453 7.1:+35764399 MS.gene94765:CDS
TCTGTTTGCAGAGGCAGGAA+AGG 0.538364 7.1:+35764330 MS.gene94765:CDS
TCAGATTGAGCAGAAATGGT+TGG 0.541398 7.1:-35765372 None:intergenic
ACTCCAATGTCATCCATTGA+TGG 0.546893 7.1:+35765540 MS.gene94765:CDS
TCTACCTTTGGCTTCTTCAG+GGG 0.550005 7.1:-35766503 None:intergenic
GAACGTGTCATGTTTATATG+TGG 0.557536 7.1:+35764621 MS.gene94765:CDS
CATTGACTCCAAGCTTCTGA+AGG 0.561296 7.1:-35764822 None:intergenic
AGTTAATATTGGTAAAGAAG+AGG 0.563830 7.1:+35765101 MS.gene94765:CDS
CCTTAGCACCACAACTCTAA+GGG 0.573824 7.1:-35764293 None:intergenic
AGGGACCCTTGCAAAACTTG+TGG 0.575071 7.1:+35764393 MS.gene94765:CDS
AGCATATCCACCTGTAATAG+GGG 0.575488 7.1:-35765475 None:intergenic
ATTTCCTCCACGTCATTAAG+GGG 0.575782 7.1:-35765591 None:intergenic
CTCAATCCGAACAACTCAGC+GGG 0.579196 7.1:+35764529 MS.gene94765:CDS
ACTAACCAATGAACTGGTTG+AGG 0.582536 7.1:-35765780 None:intergenic
ATATGCAACACTGCTCCTAA+GGG 0.592224 7.1:-35765237 None:intergenic
TTAAATATAAAGTCCGACAA+AGG 0.595166 7.1:-35765033 None:intergenic
CCTAAATCCCCTATTACAGG+TGG 0.600307 7.1:+35765468 MS.gene94765:CDS
CACGTTCTCGCAGAGGTAGT+AGG 0.601493 7.1:-35764605 None:intergenic
CGTTAATATTGGCCAGAAGG+AGG 0.604404 7.1:+35765617 MS.gene94765:CDS
TTTCTGCTCAATCTGAACTC+AGG 0.604931 7.1:+35765379 MS.gene94765:CDS
ATACCATCAATGGATGACAT+TGG 0.606080 7.1:-35765543 None:intergenic
GGTCGTTAATATTGGCCAGA+AGG 0.607810 7.1:+35765614 MS.gene94765:CDS
AAACAAAGTTCTGTTTGCAG+AGG 0.616403 7.1:+35764321 MS.gene94765:CDS
GCAGTGTTGCATATTCTCCA+AGG 0.619271 7.1:+35765246 MS.gene94765:CDS
GTAGTAGGACTTCAAGGACT+CGG 0.621417 7.1:-35764590 None:intergenic
TTTGTCGACTTGCTCAGCTG+AGG 0.622308 7.1:-35764266 None:intergenic
TCTATGGTCACACACCTGCA+AGG 0.646114 7.1:+35764498 MS.gene94765:CDS
AACATGACACGTTCTCGCAG+AGG 0.662980 7.1:-35764612 None:intergenic
TTTCCTCCACGTCATTAAGG+GGG 0.685681 7.1:-35765590 None:intergenic
ACTCAATCCGAACAACTCAG+CGG 0.727420 7.1:+35764528 MS.gene94765:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GTTTATTATAATTAAAATGT+AGG - chr7.1:35765830-35765849 None:intergenic 10.0%
!!! CTTTTTTAATTTAACAATTA+AGG + chr7.1:35766115-35766134 MS.gene94765:intron 10.0%
!!! AGTAATTTAAAATGAACAAA+AGG + chr7.1:35766325-35766344 MS.gene94765:intron 15.0%
!!! TTATAATTGTTTTTAGGTAT+CGG - chr7.1:35765417-35765436 None:intergenic 15.0%
!! ATAAGTGTTAAATATGTTGT+TGG - chr7.1:35765998-35766017 None:intergenic 20.0%
!! ATTTGAAGAGTGATTAAAAA+TGG + chr7.1:35765951-35765970 MS.gene94765:intron 20.0%
!! GATACCTAAAAACAATTATA+AGG + chr7.1:35765416-35765435 MS.gene94765:CDS 20.0%
!! TTTGAGTAGATTAAAATAGT+CGG - chr7.1:35766149-35766168 None:intergenic 20.0%
!!! AAAATTTGGTCTCTAAATTT+TGG - chr7.1:35765925-35765944 None:intergenic 20.0%
!!! AATAGTACTAATTTTCCATA+AGG + chr7.1:35766227-35766246 MS.gene94765:intron 20.0%
!!! ATATTATCTTTAGAATTGAC+TGG + chr7.1:35766022-35766041 MS.gene94765:intron 20.0%
!!! ATTTGTTATATTAAATGCAG+AGG - chr7.1:35766210-35766229 None:intergenic 20.0%
!!! TTTGCCTTATAATTGTTTTT+AGG - chr7.1:35765423-35765442 None:intergenic 20.0%
! AAATACATACAGTTACCTTA+TGG - chr7.1:35766245-35766264 None:intergenic 25.0%
! AACCAATTGGAAGTTAATAT+TGG + chr7.1:35765090-35765109 MS.gene94765:CDS 25.0%
! AAGATATGAAATACCATCAA+TGG - chr7.1:35765556-35765575 None:intergenic 25.0%
! AATATTGAAGCTGTGAAATT+TGG + chr7.1:35764427-35764446 MS.gene94765:CDS 25.0%
! AGTTAATATTGGTAAAGAAG+AGG + chr7.1:35765101-35765120 MS.gene94765:CDS 25.0%
! AGTTGTTATGAATCTAATAC+AGG - chr7.1:35765679-35765698 None:intergenic 25.0%
! ATGTAGGATGATATTATGTT+TGG - chr7.1:35765814-35765833 None:intergenic 25.0%
! CAAATATGAAAATAGTATGC+AGG - chr7.1:35766054-35766073 None:intergenic 25.0%
! CTTCAAATTCCTTCAAAATT+TGG - chr7.1:35765939-35765958 None:intergenic 25.0%
! GTCGGACTTTATATTTAAAA+AGG + chr7.1:35765038-35765057 MS.gene94765:CDS 25.0%
! TAATATACTAACCAATGAAC+TGG - chr7.1:35765789-35765808 None:intergenic 25.0%
! TACCAATATTAACTTCCAAT+TGG - chr7.1:35765095-35765114 None:intergenic 25.0%
! TTAAATATAAAGTCCGACAA+AGG - chr7.1:35765036-35765055 None:intergenic 25.0%
! TTCATATCTTGAAAGAATGA+AGG + chr7.1:35765566-35765585 MS.gene94765:CDS 25.0%
!! ATTTAGAGACCAAATTTTGA+AGG + chr7.1:35765927-35765946 MS.gene94765:intron 25.0%
!! TAAGGTAACTGTATGTATTT+TGG + chr7.1:35766245-35766264 MS.gene94765:intron 25.0%
!!! AAAAAGTGTTAGTGATGTAA+TGG - chr7.1:35766101-35766120 None:intergenic 25.0%
!!! TAAAGAAATCGGTTTTGTTA+AGG + chr7.1:35764729-35764748 MS.gene94765:CDS 25.0%
!!! TTTAGTTCTAAGTAACCAAT+TGG + chr7.1:35765077-35765096 MS.gene94765:CDS 25.0%
AAAATGAACAAAAGGTGAGA+AGG + chr7.1:35766333-35766352 MS.gene94765:intron 30.0%
AAACTTGTCGTAACAACATT+TGG - chr7.1:35764796-35764815 None:intergenic 30.0%
AAATGAACAAAAGGTGAGAA+GGG + chr7.1:35766334-35766353 MS.gene94765:intron 30.0%
AGGGATCAAAAATGTATTTG+TGG + chr7.1:35764670-35764689 MS.gene94765:CDS 30.0%
ATCTCGATACACAATATCTA+TGG + chr7.1:35764482-35764501 MS.gene94765:CDS 30.0%
CAACCACATGAAATCAAATA+TGG - chr7.1:35765704-35765723 None:intergenic 30.0%
CATGTTTATATGTGGACAAT+AGG + chr7.1:35764629-35764648 MS.gene94765:CDS 30.0%
CGATTTCTTTACTCAAAATC+CGG - chr7.1:35764720-35764739 None:intergenic 30.0%
CTCACTAATTCTTCAATATG+TGG + chr7.1:35764962-35764981 MS.gene94765:intron 30.0%
GAGTGATTAAAAATGGAAGT+TGG + chr7.1:35765958-35765977 MS.gene94765:intron 30.0%
GATTTCTTTACTCAAAATCC+GGG - chr7.1:35764719-35764738 None:intergenic 30.0%
TCTGTCACCATAAATGTTAA+TGG - chr7.1:35765507-35765526 None:intergenic 30.0%
TGATCTTCTCAAATTGTCAT+TGG + chr7.1:35764999-35765018 MS.gene94765:CDS 30.0%
TGGAACACCATTAACATTTA+TGG + chr7.1:35765497-35765516 MS.gene94765:CDS 30.0%
! GTACTGTTTGAGTTACTTTA+GGG + chr7.1:35764651-35764670 MS.gene94765:CDS 30.0%
! TCACCATATTTGATTTCATG+TGG + chr7.1:35765698-35765717 MS.gene94765:intron 30.0%
!! ATGGAAGTTGGTATATTTAG+AGG + chr7.1:35765970-35765989 MS.gene94765:intron 30.0%
!! CGGATTTTGAGTAAAGAAAT+CGG + chr7.1:35764718-35764737 MS.gene94765:CDS 30.0%
!! TGGAAGTTGGTATATTTAGA+GGG + chr7.1:35765971-35765990 MS.gene94765:intron 30.0%
!!! GATTTTTTTTCTTGAAGCTG+AGG + chr7.1:35765176-35765195 MS.gene94765:CDS 30.0%
!!! TTTTAGGTATCGGTAATATC+TGG - chr7.1:35765407-35765426 None:intergenic 30.0%
AAACAAAGTTCTGTTTGCAG+AGG + chr7.1:35764321-35764340 MS.gene94765:CDS 35.0%
AAGAAAGTAGGAGTCATGAA+GGG + chr7.1:35766357-35766376 MS.gene94765:intron 35.0%
AAGAAGCCAAAGGTAGAAAA+AGG + chr7.1:35766509-35766528 MS.gene94765:CDS 35.0%
AGAGGAAGAATCTGATGAAA+TGG + chr7.1:35765119-35765138 MS.gene94765:CDS 35.0%
AGCAAAAGATACCTCTTTCT+TGG - chr7.1:35764890-35764909 None:intergenic 35.0%
AGCTTACAAAAGAGAATCCT+TGG - chr7.1:35765266-35765285 None:intergenic 35.0%
AGCTTCTTATCATTGCCTTT+AGG + chr7.1:35764373-35764392 MS.gene94765:CDS 35.0%
ATACCATCAATGGATGACAT+TGG - chr7.1:35765546-35765565 None:intergenic 35.0%
CTTCAATATGTGGTTTGAAC+AGG + chr7.1:35764972-35764991 MS.gene94765:intron 35.0%
GAACGTGTCATGTTTATATG+TGG + chr7.1:35764621-35764640 MS.gene94765:CDS 35.0%
GAGGAAATGGTCGTTAATAT+TGG + chr7.1:35765606-35765625 MS.gene94765:CDS 35.0%
GCTTCTTATCATTGCCTTTA+GGG + chr7.1:35764374-35764393 MS.gene94765:CDS 35.0%
TATCAACATCACCAAGAAAG+AGG + chr7.1:35764876-35764895 MS.gene94765:CDS 35.0%
TCAAAATCTGCCTTGACAAA+CGG + chr7.1:35765757-35765776 MS.gene94765:CDS 35.0%
TGGATCTTCATATGATCCAA+GGG + chr7.1:35766265-35766284 MS.gene94765:intron 35.0%
TTAAATCTCCTTCAGAAGCT+TGG + chr7.1:35764814-35764833 MS.gene94765:CDS 35.0%
TTGGATCTTCATATGATCCA+AGG + chr7.1:35766264-35766283 MS.gene94765:intron 35.0%
! ATTTGATTTCATGTGGTTGC+AGG + chr7.1:35765705-35765724 MS.gene94765:intron 35.0%
! GGTACTGTTTGAGTTACTTT+AGG + chr7.1:35764650-35764669 MS.gene94765:CDS 35.0%
! TCAAAATCCGGGATTTTTCT+CGG - chr7.1:35764708-35764727 None:intergenic 35.0%
! TTTGATTTCATGTGGTTGCA+GGG + chr7.1:35765706-35765725 MS.gene94765:intron 35.0%
!! AGTTTTCTCACTTTTCCCTT+AGG + chr7.1:35765222-35765241 MS.gene94765:CDS 35.0%
!! CTTGGTGATGTTGATATTGA+CGG - chr7.1:35764872-35764891 None:intergenic 35.0%
AATATGCAACACTGCTCCTA+AGG - chr7.1:35765241-35765260 None:intergenic 40.0%
ACTAACCAATGAACTGGTTG+AGG - chr7.1:35765783-35765802 None:intergenic 40.0%
ACTCCAATGTCATCCATTGA+TGG + chr7.1:35765540-35765559 MS.gene94765:CDS 40.0%
AGCATATCCACCTGTAATAG+GGG - chr7.1:35765478-35765497 None:intergenic 40.0%
ATATGCAACACTGCTCCTAA+GGG - chr7.1:35765240-35765259 None:intergenic 40.0%
ATTGAGTAGCATTTCCTTGC+AGG - chr7.1:35764515-35764534 None:intergenic 40.0%
ATTTCCTCCACGTCATTAAG+GGG - chr7.1:35765594-35765613 None:intergenic 40.0%
CAAAGTTTCCCTTAGAGTTG+TGG + chr7.1:35764285-35764304 MS.gene94765:CDS 40.0%
CAATATGTGGTTTGAACAGG+TGG + chr7.1:35764975-35764994 MS.gene94765:intron 40.0%
CAGCATATCCACCTGTAATA+GGG - chr7.1:35765479-35765498 None:intergenic 40.0%
CATATGATCCAAGGGTAATG+TGG + chr7.1:35766273-35766292 MS.gene94765:intron 40.0%
CATTTCCTCCACGTCATTAA+GGG - chr7.1:35765595-35765614 None:intergenic 40.0%
GAAGAAAGTAGGAGTCATGA+AGG + chr7.1:35766356-35766375 MS.gene94765:intron 40.0%
GAGTTCAGATTGAGCAGAAA+TGG - chr7.1:35765379-35765398 None:intergenic 40.0%
GATCCTAAATCCCCTATTAC+AGG + chr7.1:35765465-35765484 MS.gene94765:CDS 40.0%
GGTCTCAAAAACTCCTTTGT+CGG + chr7.1:35765020-35765039 MS.gene94765:CDS 40.0%
TCAGATTGAGCAGAAATGGT+TGG - chr7.1:35765375-35765394 None:intergenic 40.0%
TGAGTTCAGACAAGTGTTTG+AGG + chr7.1:35765319-35765338 MS.gene94765:CDS 40.0%
TGCAGGTATTAGACATGTTC+AGG + chr7.1:35766457-35766476 MS.gene94765:intron 40.0%
TGTTGAACCGAGAAAAATCC+CGG + chr7.1:35764698-35764717 MS.gene94765:CDS 40.0%
TTATACGTGCATGTACATGC+AGG + chr7.1:35766440-35766459 MS.gene94765:intron 40.0%
TTTCTGCTCAATCTGAACTC+AGG + chr7.1:35765379-35765398 MS.gene94765:CDS 40.0%
! CTTAGCCACAAGTTTTGCAA+GGG - chr7.1:35764401-35764420 None:intergenic 40.0%
! GAGCTTCCTTTTTCTACCTT+TGG - chr7.1:35766518-35766537 None:intergenic 40.0%
! GTTTGTCAAGGCAGATTTTG+AGG - chr7.1:35765758-35765777 None:intergenic 40.0%
! TCATGAAGGGTGTGTAATCT+TGG + chr7.1:35766370-35766389 MS.gene94765:intron 40.0%
! TTCTACCTTTGGCTTCTTCA+GGG - chr7.1:35766507-35766526 None:intergenic 40.0%
! TTTCTACCTTTGGCTTCTTC+AGG - chr7.1:35766508-35766527 None:intergenic 40.0%
AAAGTTCTGTTTGCAGAGGC+AGG + chr7.1:35764325-35764344 MS.gene94765:CDS 45.0%
ACTCAATCCGAACAACTCAG+CGG + chr7.1:35764528-35764547 MS.gene94765:CDS 45.0%
AGGGTAATGTGGAGTAAGGA+CGG + chr7.1:35766284-35766303 MS.gene94765:intron 45.0%
AGGTGAGAAGGGAAGAAAGT+AGG + chr7.1:35766345-35766364 MS.gene94765:intron 45.0%
ATTGGCCAGAAGGAGGTAAA+AGG + chr7.1:35765624-35765643 MS.gene94765:intron 45.0%
CCACCTGTAATAGGGGATTT+AGG - chr7.1:35765471-35765490 None:intergenic 45.0%
CCAGCATATCCACCTGTAAT+AGG - chr7.1:35765480-35765499 None:intergenic 45.0%
CCATTTCCTCCACGTCATTA+AGG - chr7.1:35765596-35765615 None:intergenic 45.0%
CCTAAATCCCCTATTACAGG+TGG + chr7.1:35765468-35765487 MS.gene94765:CDS 45.0%
CCTATTACAGGTGGATATGC+TGG + chr7.1:35765477-35765496 MS.gene94765:CDS 45.0%
CCTTAATGACGTGGAGGAAA+TGG + chr7.1:35765593-35765612 MS.gene94765:CDS 45.0%
CCTTAGCACCACAACTCTAA+GGG - chr7.1:35764296-35764315 None:intergenic 45.0%
CCTTGCAAAACTTGTGGCTA+AGG + chr7.1:35764399-35764418 MS.gene94765:CDS 45.0%
CGTTAATATTGGCCAGAAGG+AGG + chr7.1:35765617-35765636 MS.gene94765:CDS 45.0%
GCAGTGTTGCATATTCTCCA+AGG + chr7.1:35765246-35765265 MS.gene94765:CDS 45.0%
GGTCGTTAATATTGGCCAGA+AGG + chr7.1:35765614-35765633 MS.gene94765:CDS 45.0%
GTAGTAGGACTTCAAGGACT+CGG - chr7.1:35764593-35764612 None:intergenic 45.0%
TCCAAGGGTAATGTGGAGTA+AGG + chr7.1:35766280-35766299 MS.gene94765:intron 45.0%
TCCTTACTCCACATTACCCT+TGG - chr7.1:35766284-35766303 None:intergenic 45.0%
TTGAGCAGAAATGGTTGGAC+TGG - chr7.1:35765370-35765389 None:intergenic 45.0%
TTGGCCAGAAGGAGGTAAAA+GGG + chr7.1:35765625-35765644 MS.gene94765:intron 45.0%
TTTCCTCCACGTCATTAAGG+GGG - chr7.1:35765593-35765612 None:intergenic 45.0%
! AGTTTTGCAAGGGTCCCTAA+AGG - chr7.1:35764391-35764410 None:intergenic 45.0%
! CCTTAGAGTTGTGGTGCTAA+GGG + chr7.1:35764294-35764313 MS.gene94765:CDS 45.0%
! CCTTAGCCACAAGTTTTGCA+AGG - chr7.1:35764402-35764421 None:intergenic 45.0%
! TACTCCCTTTTACCTCCTTC+TGG - chr7.1:35765632-35765651 None:intergenic 45.0%
! TCTACCTTTGGCTTCTTCAG+GGG - chr7.1:35766506-35766525 None:intergenic 45.0%
!! CATTGACTCCAAGCTTCTGA+AGG - chr7.1:35764825-35764844 None:intergenic 45.0%
AACATGACACGTTCTCGCAG+AGG - chr7.1:35764615-35764634 None:intergenic 50.0%
AACGGCCTCAACCAGTTCAT+TGG + chr7.1:35765775-35765794 MS.gene94765:CDS 50.0%
AGGGACCCTTGCAAAACTTG+TGG + chr7.1:35764393-35764412 MS.gene94765:CDS 50.0%
CCCTTAGCACCACAACTCTA+AGG - chr7.1:35764297-35764316 None:intergenic 50.0%
CTCAATCCGAACAACTCAGC+GGG + chr7.1:35764529-35764548 MS.gene94765:CDS 50.0%
GCAGAGGTAGTAGGACTTCA+AGG - chr7.1:35764599-35764618 None:intergenic 50.0%
TAAGCACCCGCTGAGTTGTT+CGG - chr7.1:35764538-35764557 None:intergenic 50.0%
TCTATGGTCACACACCTGCA+AGG + chr7.1:35764498-35764517 MS.gene94765:CDS 50.0%
TCTGTTTGCAGAGGCAGGAA+AGG + chr7.1:35764330-35764349 MS.gene94765:CDS 50.0%
! CCCTTAGAGTTGTGGTGCTA+AGG + chr7.1:35764293-35764312 MS.gene94765:CDS 50.0%
! CTACCTTTGGCTTCTTCAGG+GGG - chr7.1:35766505-35766524 None:intergenic 50.0%
!! TTTGTCGACTTGCTCAGCTG+AGG - chr7.1:35764269-35764288 None:intergenic 50.0%
ACTCAGCGGGTGCTTATTGC+TGG + chr7.1:35764542-35764561 MS.gene94765:CDS 55.0%
CACGTTCTCGCAGAGGTAGT+AGG - chr7.1:35764608-35764627 None:intergenic 55.0%
CTGGTTGAGGCCGTTTGTCA+AGG - chr7.1:35765770-35765789 None:intergenic 55.0%
GAAGGTCCCCCTTAATGACG+TGG + chr7.1:35765584-35765603 MS.gene94765:CDS 55.0%
GGTCCCCCTTAATGACGTGG+AGG + chr7.1:35765587-35765606 MS.gene94765:CDS 60.0%
TCGCCCCCTGAAGAAGCCAA+AGG + chr7.1:35766499-35766518 MS.gene94765:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 35764253 35766544 35764253 ID=MS.gene94765
chr7.1 mRNA 35764253 35766544 35764253 ID=MS.gene94765.t1;Parent=MS.gene94765
chr7.1 exon 35764253 35764897 35764253 ID=MS.gene94765.t1.exon1;Parent=MS.gene94765.t1
chr7.1 CDS 35764253 35764897 35764253 ID=cds.MS.gene94765.t1;Parent=MS.gene94765.t1
chr7.1 exon 35764994 35765638 35764994 ID=MS.gene94765.t1.exon2;Parent=MS.gene94765.t1
chr7.1 CDS 35764994 35765638 35764994 ID=cds.MS.gene94765.t1;Parent=MS.gene94765.t1
chr7.1 exon 35765727 35765796 35765727 ID=MS.gene94765.t1.exon3;Parent=MS.gene94765.t1
chr7.1 CDS 35765727 35765796 35765727 ID=cds.MS.gene94765.t1;Parent=MS.gene94765.t1
chr7.1 exon 35766462 35766544 35766462 ID=MS.gene94765.t1.exon4;Parent=MS.gene94765.t1
chr7.1 CDS 35766462 35766544 35766462 ID=cds.MS.gene94765.t1;Parent=MS.gene94765.t1
Gene Sequence

>MS.gene94765

ATGGCTGAAAATTCCTCAGCTGAGCAAGTCGACAAAGTTTCCCTTAGAGTTGTGGTGCTAAGGGAGAAAAACAAAGTTCTGTTTGCAGAGGCAGGAAAGGATTTTGTTGATGTTCTTTTGAGCTTCTTATCATTGCCTTTAGGGACCCTTGCAAAACTTGTGGCTAAGGACTCAAATATTGAAGCTGTGAAATTTGGCAGCATAAGCTCACTGTATCAAAGTGTGTCAGATCTCGATACACAATATCTATGGTCACACACCTGCAAGGAAATGCTACTCAATCCGAACAACTCAGCGGGTGCTTATTGCTGGAATATGAAATTGAACATTGACAATACCGAGTCCTTGAAGTCCTACTACCTCTGCGAGAACGTGTCATGTTTATATGTGGACAATAGGTACTGTTTGAGTTACTTTAGGGATCAAAAATGTATTTGTGGAAAGCTGTTGAACCGAGAAAAATCCCGGATTTTGAGTAAAGAAATCGGTTTTGTTAAGGAAATGTCAACGTTTATCATATCTGATGATCTTTATGTTATGCCAAATGTTGTTACGACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATGACATTGATGCTATTGATAAACAAACCGTCAATATCAACATCACCAAGAAAGAGGTATCTTTTGCTGTTCTGTGTTTGTATGACATATTTTTTGTTGATTATTATTATTGTTTTTTCTCTCACTAATTCTTCAATATGTGGTTTGAACAGGTGGTTGATCTTCTCAAATTGTCATTGGTCTCAAAAACTCCTTTGTCGGACTTTATATTTAAAAAGGAACATTTTGTTGAAGATTTAGTTCTAAGTAACCAATTGGAAGTTAATATTGGTAAAGAAGAGGAAGAATCTGATGAAATGGTTGTGAAAGTACTGAGAAGAAAATCAAGTAAACAGATTTTTTTTCTTGAAGCTGAGGAAGATTTTGCTGATTTTGTTTTTAGTTTTCTCACTTTTCCCTTAGGAGCAGTGTTGCATATTCTCCAAGGATTCTCTTTTGTAAGCTGCATTGATAATTTATATAAGAGCGTGACTGAGTTGAGTTCAGACAAGTGTTTGAGGTCACAGCTTTTCAAAGACATACTAACCAGTCCAACCATTTCTGCTCAATCTGAACTCAGGAACCAGATATTACCGATACCTAAAAACAATTATAAGGCAAAAAATATGTCATACAAATTTGTTGATCCTAAATCCCCTATTACAGGTGGATATGCTGGAACACCATTAACATTTATGGTGACAGACGAATTAGTTGTGACTCCAATGTCATCCATTGATGGTATTTCATATCTTGAAAGAATGAAGGTCCCCCTTAATGACGTGGAGGAAATGGTCGTTAATATTGGCCAGAAGGAGGTAAAAGGGAGTATGTTCGTCTTTCAGTTTAATATTTCCTGTATTAGATTCATAACAACTCACCATATTTGATTTCATGTGGTTGCAGGGTCTCAGCATACTTAGAGCTTCATTGACCTCAAAATCTGCCTTGACAAACGGCCTCAACCAGTTCATTGGTTAGTATATTAGACCAAACATAATATCATCCTACATTTTAATTATAATAAACACAATATTAAAGTTCATCTATAAAATTCTTCAAAAATAGTCGCTTCGAACATGTTAAGTGAACTTTTGTTAACCAAAATTTAGAGACCAAATTTTGAAGGAATTTGAAGAGTGATTAAAAATGGAAGTTGGTATATTTAGAGGGACCAACAACATATTTAACACTTATTTGTATATTATCTTTAGAATTGACTGGTTTGTGCCTGCATACTATTTTCATATTTGAAATACTTGTGTAAACTAACATAGCCATTACATCACTAACACTTTTTTAATTTAACAATTAAGGAGAAATCACCGACTATTTTAATCTACTCAAATGTGCTACGCAACTCATGCTTATAAAAATATTAGATGACCTCTGCATTTAATATAACAAATAGTACTAATTTTCCATAAGGTAACTGTATGTATTTTGGATCTTCATATGATCCAAGGGTAATGTGGAGTAAGGACGGTTAATGTCAAGAAAATTAAGTAATTTAAAATGAACAAAAGGTGAGAAGGGAAGAAAGTAGGAGTCATGAAGGGTGTGTAATCTTGGTCACTTGTTTGTTAAATAATTTTTAATATGTGCTAACTACTTTTTTATTATACGTGCATGTACATGCAGGTATTAGACATGTTCAGGCTAATTTGTCATCTAATGCTCGCCCCCTGAAGAAGCCAAAGGTAGAAAAAGGAAGCTCGAGATAA
Protein sequence

>MS.gene94765.t1

MAENSSAEQVDKVSLRVVVLREKNKVLFAEAGKDFVDVLLSFLSLPLGTLAKLVAKDSNIEAVKFGSISSLYQSVSDLDTQYLWSHTCKEMLLNPNNSAGAYCWNMKLNIDNTESLKSYYLCENVSCLYVDNRYCLSYFRDQKCICGKLLNREKSRILSKEIGFVKEMSTFIISDDLYVMPNVVTTSLNLLQKLGVNDIDAIDKQTVNINITKKEVVDLLKLSLVSKTPLSDFIFKKEHFVEDLVLSNQLEVNIGKEEEESDEMVVKVLRRKSSKQIFFLEAEEDFADFVFSFLTFPLGAVLHILQGFSFVSCIDNLYKSVTELSSDKCLRSQLFKDILTSPTISAQSELRNQILPIPKNNYKAKNMSYKFVDPKSPITGGYAGTPLTFMVTDELVVTPMSSIDGISYLERMKVPLNDVEEMVVNIGQKEGLSILRASLTSKSALTNGLNQFIGIRHVQANLSSNARPLKKPKVEKGSSR