AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73307

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73307.t1 MTR_4g017830 88.235 374 39 1 1 374 110 478 0.0 659
MS.gene73307.t1 MTR_4g019340 71.505 372 82 3 3 374 143 490 0.0 520
MS.gene73307.t1 MTR_4g017440 65.600 375 115 5 1 374 118 479 1.08e-165 474
MS.gene73307.t1 MTR_4g017550 64.628 376 112 9 3 374 92 450 1.48e-153 442
MS.gene73307.t1 MTR_4g017410 62.791 387 109 8 1 382 111 467 3.64e-151 437
MS.gene73307.t1 MTR_4g017470 65.938 320 104 3 59 374 129 447 3.22e-136 399
MS.gene73307.t1 MTR_4g017470 32.867 143 72 4 166 291 15 150 4.11e-12 68.2
MS.gene73307.t1 MTR_4g017610 53.209 374 145 7 1 374 113 456 6.92e-121 359
MS.gene73307.t1 MTR_4g019310 36.911 382 206 11 3 374 110 466 2.52e-64 214
MS.gene73307.t1 MTR_7g066340 31.202 391 186 11 2 374 105 430 1.74e-44 160
MS.gene73307.t1 MTR_7g066340 27.572 243 142 7 163 398 12 227 6.81e-14 73.6
MS.gene73307.t1 MTR_7g066400 33.159 383 183 12 5 374 92 414 5.01e-44 159
MS.gene73307.t1 MTR_7g066260 32.225 391 188 15 2 374 108 439 1.41e-41 153
MS.gene73307.t1 MTR_7g066350 30.390 385 190 12 5 374 105 426 2.02e-41 152
MS.gene73307.t1 MTR_7g066570 32.152 395 200 15 3 374 108 457 2.27e-41 154
MS.gene73307.t1 MTR_7g058710 29.427 384 232 9 5 374 96 454 9.37e-41 150
MS.gene73307.t1 MTR_7g066430 31.915 376 218 10 15 374 109 462 2.81e-38 144
MS.gene73307.t1 MTR_7g066410 32.195 410 212 14 5 374 106 489 4.93e-37 141
MS.gene73307.t1 MTR_7g063900 30.412 388 224 16 2 374 103 459 3.08e-34 133
MS.gene73307.t1 MTR_7g063900 28.646 192 107 5 160 343 7 176 4.25e-14 73.9
MS.gene73307.t1 MTR_1g041315 28.000 400 197 13 3 374 108 444 2.29e-33 130
MS.gene73307.t1 MTR_7g062280 29.293 396 215 13 5 374 106 462 1.46e-32 128
MS.gene73307.t1 MTR_7g062280 30.392 204 108 9 164 352 11 195 9.79e-13 70.1
MS.gene73307.t1 MTR_7g066360 31.510 384 186 13 3 374 108 426 6.62e-31 123
MS.gene73307.t1 MTR_7g063660 29.365 378 223 15 3 371 103 445 1.26e-30 122
MS.gene73307.t1 MTR_7g063660 36.364 110 63 2 163 265 9 118 9.46e-14 73.2
MS.gene73307.t1 MTR_7g062300 29.365 378 228 13 3 374 106 450 1.49e-29 119
MS.gene73307.t1 MTR_7g062300 30.102 196 107 7 164 352 13 185 4.18e-14 73.9
MS.gene73307.t1 MTR_7g066290 34.340 265 145 8 5 254 111 361 3.13e-29 118
MS.gene73307.t1 MTR_7g066280 27.250 400 217 11 2 374 15 367 1.16e-28 116
MS.gene73307.t1 MTR_7g012680 30.077 389 177 17 5 374 110 422 6.31e-28 114
MS.gene73307.t1 MTR_7g066580 27.089 395 206 15 2 374 88 422 1.88e-27 113
MS.gene73307.t1 MTR_7g066680 31.461 267 157 5 115 374 37 284 2.83e-26 108
MS.gene73307.t1 MTR_7g063890 28.792 389 224 13 1 371 119 472 3.38e-26 110
MS.gene73307.t1 MTR_7g063890 29.949 197 108 8 166 354 30 204 6.86e-12 67.4
MS.gene73307.t1 MTR_7g063880 29.275 386 210 18 2 374 104 439 4.19e-26 109
MS.gene73307.t1 MTR_7g063880 31.217 189 99 7 163 343 11 176 3.02e-13 71.2
MS.gene73307.t1 MTR_7g063840 27.013 385 224 15 3 374 104 444 1.22e-25 108
MS.gene73307.t1 MTR_7g063830 31.047 277 158 7 3 267 104 359 3.35e-25 107
MS.gene73307.t1 MTR_7g063830 37.624 101 56 3 166 259 13 113 4.37e-11 64.7
MS.gene73307.t1 MTR_7g063920 27.389 314 194 8 65 374 124 407 5.02e-24 103
MS.gene73307.t1 MTR_7g066310 32.394 213 98 6 163 374 193 360 1.61e-23 101
MS.gene73307.t1 MTR_7g063670 28.982 383 210 15 3 374 97 428 5.93e-23 100
MS.gene73307.t1 MTR_7g058700 29.371 286 135 13 5 260 601 849 5.96e-23 101
MS.gene73307.t1 MTR_3g065200 27.056 377 201 13 5 374 89 398 1.21e-22 99.8
MS.gene73307.t1 MTR_7g063820 26.684 386 236 9 3 374 103 455 6.18e-22 97.8
MS.gene73307.t1 MTR_7g063820 35.238 105 62 2 161 259 8 112 2.98e-12 68.6
MS.gene73307.t1 MTR_3g007740 28.349 321 188 8 57 374 138 419 1.18e-21 96.7
MS.gene73307.t1 MTR_7g100420 33.083 266 147 9 115 374 134 374 4.68e-21 94.4
MS.gene73307.t1 MTR_4g019350 44.554 101 44 2 221 321 1 89 3.08e-19 82.4
MS.gene73307.t1 MTR_7g063720 29.630 216 115 6 162 374 22 203 4.65e-19 86.3
MS.gene73307.t1 MTR_7g066480 33.977 259 132 11 3 245 110 345 3.42e-18 86.3
MS.gene73307.t1 MTR_8g445860 28.319 226 133 4 159 374 9 215 4.04e-18 83.6
MS.gene73307.t1 MTR_0150s0010 29.680 219 134 8 163 374 10 215 1.46e-16 79.0
MS.gene73307.t1 MTR_7g062270 29.353 201 111 6 159 352 6 182 3.65e-15 77.0
MS.gene73307.t1 MTR_1g115450 42.857 84 46 1 158 239 2 85 8.35e-15 71.6
MS.gene73307.t1 MTR_1g115440 29.167 216 139 6 163 374 11 216 2.92e-14 72.4
MS.gene73307.t1 MTR_7g066490 31.818 176 106 4 73 245 167 331 3.46e-13 70.9
MS.gene73307.t1 MTR_1g115455 39.759 83 48 1 159 239 5 87 4.72e-13 68.6
MS.gene73307.t1 MTR_8g445920 46.774 62 33 0 163 224 10 71 1.20e-12 64.3
MS.gene73307.t1 MTR_8g044890 46.774 62 33 0 163 224 10 71 1.20e-12 64.3
MS.gene73307.t1 MTR_0150s0030 37.647 85 50 1 159 240 4 88 2.12e-12 66.2
MS.gene73307.t1 MTR_8g445910 38.824 85 49 1 159 240 4 88 4.98e-12 66.2
MS.gene73307.t1 MTR_8g044880 39.286 84 48 1 159 239 4 87 5.89e-12 66.2
MS.gene73307.t1 MTR_1g115470 40.698 86 49 1 159 242 2 87 1.12e-11 66.6
MS.gene73307.t1 MTR_8g023240 22.015 268 168 7 2 247 116 364 1.18e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73307.t1 AT5G01120 29.563 389 234 12 2 374 102 466 8.34e-36 137
MS.gene73307.t1 AT5G01140 30.026 383 218 14 2 374 86 428 6.18e-34 132
MS.gene73307.t1 AT3G09140 28.784 403 223 14 2 374 102 470 7.73e-32 126
MS.gene73307.t1 AT3G09140 26.794 209 137 6 159 356 5 208 8.58e-11 63.9
MS.gene73307.t1 AT5G01130 29.333 375 206 12 3 374 103 421 8.66e-32 125
MS.gene73307.t1 AT5G43240 30.233 387 222 15 2 366 102 462 1.35e-31 125
MS.gene73307.t1 AT5G43240 30.233 387 222 15 2 366 102 462 1.35e-31 125
MS.gene73307.t1 AT5G43240 30.233 387 222 15 2 366 102 462 1.35e-31 125
MS.gene73307.t1 AT5G43240 30.581 327 193 10 55 366 11 318 1.31e-27 112
MS.gene73307.t1 AT3G09140 26.914 431 223 15 2 374 102 498 3.88e-27 113
MS.gene73307.t1 AT5G01150 28.684 380 237 11 3 374 103 456 5.95e-26 109
MS.gene73307.t1 AT3G09110 33.906 233 128 7 2 224 102 318 1.40e-25 106
MS.gene73307.t1 AT5G37320 26.992 389 227 14 5 374 106 456 1.02e-23 103
MS.gene73307.t1 AT3G09120 32.127 221 134 7 5 217 101 313 2.57e-21 94.0

Find 84 sgRNAs with CRISPR-Local

Find 315 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCACCCACTAATTGTTATTA+TGG 0.195503 4.1:-79787046 MS.gene73307:CDS
GTGGAACGGTTGATGGAATT+AGG 0.233064 4.1:-79789664 MS.gene73307:CDS
AGGAGTGATTTCTAAGAAAA+AGG 0.237632 4.1:-79786951 MS.gene73307:CDS
GGTATTGCTGATGCTTTAAA+TGG 0.278450 4.1:-79789766 MS.gene73307:CDS
TAATAAACAGCCTAAGAAAT+TGG 0.286513 4.1:-79789815 MS.gene73307:CDS
GGTGGTTGTGGTTGTGCATT+AGG 0.307334 4.1:+79787064 None:intergenic
TTTGACTTGATTGAGGATCT+TGG 0.316826 4.1:+79786890 None:intergenic
CCCTCAGAATCCAATTTCTT+AGG 0.332364 4.1:+79789805 None:intergenic
TTCAGATTTGAGTAAGTTAG+AGG 0.335387 4.1:-79789638 MS.gene73307:CDS
TTGCACCAGCGATGTTAAAA+TGG 0.339211 4.1:-79787356 MS.gene73307:CDS
AGGGTCCGTTGTAAAGCTTT+TGG 0.360145 4.1:-79787233 MS.gene73307:CDS
ACTGCTGATGCAAATTCCTT+TGG 0.374617 4.1:+79787391 None:intergenic
CATGGGGCTGCTGGAATTGA+TGG 0.380437 4.1:-79785887 MS.gene73307:CDS
GAAATTGGATTCTGAGGGTC+AGG 0.380588 4.1:-79789800 MS.gene73307:CDS
AAAGCAACATTATATGCTAT+TGG 0.383153 4.1:-79786842 MS.gene73307:CDS
CAGAATCTTGTTTGTACTTG+TGG 0.388281 4.1:-79789847 MS.gene73307:CDS
TTCTTAGGCTGTTTATTAGT+GGG 0.393279 4.1:+79789820 None:intergenic
TCTGAGGGTCAGGGTAATAA+TGG 0.398079 4.1:-79789790 MS.gene73307:CDS
CAGAGGCTCACGAGAGGTTA+AGG 0.404803 4.1:+79787459 None:intergenic
TAGAGATAATAGTGGTTTCA+TGG 0.407987 4.1:-79785847 MS.gene73307:CDS
TAGTGTTCAGCGACTATAAT+GGG 0.412179 4.1:-79787006 MS.gene73307:CDS
TTTCTTAGGCTGTTTATTAG+TGG 0.415663 4.1:+79789819 None:intergenic
GTATTGCTGATGCTTTAAAT+GGG 0.415851 4.1:-79789765 MS.gene73307:CDS
GACCTCTGTGGAACGGTTGA+TGG 0.425485 4.1:-79789671 MS.gene73307:CDS
CTAGTGTTCAGCGACTATAA+TGG 0.430095 4.1:-79787007 MS.gene73307:CDS
TGGAACGGTTGATGGAATTA+GGG 0.433049 4.1:-79789663 MS.gene73307:CDS
CCTGGCCTATCACCATGGTT+TGG 0.435447 4.1:-79787112 MS.gene73307:CDS
GGAATGTTGAGGAGTTGGTT+TGG 0.438474 4.1:+79787085 None:intergenic
TGTCATCAATATTCAAGAAC+AGG 0.438740 4.1:+79789926 None:intergenic
GCTGATGCAAATTCCTTTGG+TGG 0.439130 4.1:+79787394 None:intergenic
ACTAATTGTTATTATGGTAC+AGG 0.439338 4.1:-79787040 MS.gene73307:CDS
TCCAATGCAGTCAAGGCTCT+TGG 0.465938 4.1:+79786914 None:intergenic
GACAACCAAACCATGGTGAT+AGG 0.468422 4.1:+79787107 None:intergenic
ATGCAAGAATTATCAGAAAG+TGG 0.472857 4.1:+79786800 None:intergenic
CCTTCATTTCCAGATCATCA+AGG 0.480594 4.1:+79786750 None:intergenic
GTACAAGACTATTGAGACCT+TGG 0.488174 4.1:-79787176 MS.gene73307:CDS
TTCCTTCTACTTCTCTCACT+GGG 0.488548 4.1:+79785820 None:intergenic
CATTAGGAATGTTGAGGAGT+TGG 0.490761 4.1:+79787080 None:intergenic
TAACAATTAGTGGGTGGTTG+TGG 0.494219 4.1:+79787052 None:intergenic
AAGTCAAAAGAAGGTGTTGT+GGG 0.497331 4.1:-79786875 MS.gene73307:CDS
AGCTTTACAACGGACCCTAA+TGG 0.502068 4.1:+79787238 None:intergenic
TTGCATCAGCAGTCAGAGTA+AGG 0.502602 4.1:-79787381 MS.gene73307:CDS
CGCTCCGTGTTACTCAATCC+TGG 0.507746 4.1:-79787130 MS.gene73307:CDS
GCCTAAGAAATTGGATTCTG+AGG 0.513573 4.1:-79789806 MS.gene73307:CDS
AGAGAAGGTAGAGATAATAG+TGG 0.513868 4.1:-79785855 MS.gene73307:CDS
TAGTCGCTGAACACTAGCTT+TGG 0.516019 4.1:+79787013 None:intergenic
ACCAAGAGCCTTGACTGCAT+TGG 0.516962 4.1:-79786915 MS.gene73307:CDS
TCCTCAATCAAGTCAAAAGA+AGG 0.520771 4.1:-79786884 MS.gene73307:CDS
TTCAAAATTGTATTTGTCAG+AGG 0.520812 4.1:+79787442 None:intergenic
GTAGAAGAAAAGATAAAGAG+AGG 0.525245 4.1:-79786971 MS.gene73307:CDS
CTTTGATGACCTCTGTGGAA+CGG 0.529609 4.1:-79789678 MS.gene73307:CDS
TGTACCATAATAACAATTAG+TGG 0.532704 4.1:+79787042 None:intergenic
CTTCATTTCCAGATCATCAA+GGG 0.555681 4.1:+79786751 None:intergenic
CCTTGATGATCTGGAAATGA+AGG 0.561579 4.1:-79786750 MS.gene73307:CDS
CTTGGACTCTTCATTGTGCA+CGG 0.565969 4.1:-79787158 MS.gene73307:CDS
CCAAACCATGGTGATAGGCC+AGG 0.566603 4.1:+79787112 None:intergenic
TCTTGGATCCAATGCAGTCA+AGG 0.569511 4.1:+79786907 None:intergenic
CTAATTGTTATTATGGTACA+GGG 0.586796 4.1:-79787039 MS.gene73307:CDS
GAGGAAGTCACACATAACAT+TGG 0.598986 4.1:-79789619 MS.gene73307:CDS
GAAATGAAGGTGAAAAGCAT+CGG 0.612181 4.1:-79786737 MS.gene73307:CDS
CGTGCACAATGAAGAGTCCA+AGG 0.613164 4.1:+79787159 None:intergenic
GAACAAAGAAAATCCACCAA+AGG 0.613320 4.1:-79787407 MS.gene73307:CDS
CAAGTCAAAAGAAGGTGTTG+TGG 0.614507 4.1:-79786876 MS.gene73307:CDS
TATTGCTGATGCTTTAAATG+GGG 0.614508 4.1:-79789764 MS.gene73307:CDS
CCTAAGAAATTGGATTCTGA+GGG 0.618218 4.1:-79789805 MS.gene73307:CDS
AGGTTAAGGTGTACTTGAGG+AGG 0.618815 4.1:+79787473 None:intergenic
TCAATCCTGGCCTATCACCA+TGG 0.620012 4.1:-79787117 MS.gene73307:CDS
ACATAACATTGGAAAGCAAG+AGG 0.622679 4.1:-79789608 MS.gene73307:intron
GTACCATAATAACAATTAGT+GGG 0.624534 4.1:+79787043 None:intergenic
GAAAAGCATCGGTGAAGCTG+AGG 0.637156 4.1:-79786726 MS.gene73307:intron
TTCATTTCCAGATCATCAAG+GGG 0.637868 4.1:+79786752 None:intergenic
ACCATCCAAAAGCTTTACAA+CGG 0.652754 4.1:+79787228 None:intergenic
GAGGGTCAGGGTAATAATGG+TGG 0.659172 4.1:-79789787 MS.gene73307:CDS
GTGTTCTTTGATGACCTCTG+TGG 0.659585 4.1:-79789683 MS.gene73307:CDS
CCATAATAACAATTAGTGGG+TGG 0.669112 4.1:+79787046 None:intergenic
AAATTGGATTCTGAGGGTCA+GGG 0.673861 4.1:-79789799 MS.gene73307:CDS
TGGTTTGGACAACCAAACCA+TGG 0.676530 4.1:+79787100 None:intergenic
GAGAGGTTAAGGTGTACTTG+AGG 0.692261 4.1:+79787470 None:intergenic
ATTTGTCAGAGGCTCACGAG+AGG 0.701484 4.1:+79787453 None:intergenic
ACAGAGGTCATCAAAGAACA+CGG 0.704133 4.1:+79789685 None:intergenic
TTCCATCAACCGTTCCACAG+AGG 0.721769 4.1:+79789669 None:intergenic
GTTGTGCATTAGGAATGTTG+AGG 0.729602 4.1:+79787074 None:intergenic
TCATTTCCAGATCATCAAGG+GGG 0.747642 4.1:+79786753 None:intergenic
TAGGCCAGGATTGAGTAACA+CGG 0.748218 4.1:+79787126 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAGAAAAGTTTTTAATA+GGG - chr4.1:79789378-79789397 MS.gene73307:intron 10.0%
!!! ATTTTTTTTTTTTTTGAAAC+TGG - chr4.1:79786226-79786245 MS.gene73307:intron 10.0%
!!! TAATTAGAAAAGTTTTTAAT+AGG - chr4.1:79789377-79789396 MS.gene73307:intron 10.0%
!!! TTTTTTTTTTTTTTGAAACT+GGG - chr4.1:79786227-79786246 MS.gene73307:intron 10.0%
!! TAAGTAATTATGAATCATTA+AGG - chr4.1:79786840-79786859 MS.gene73307:CDS 15.0%
!! TAATGATTCATAATTACTTA+AGG + chr4.1:79786840-79786859 None:intergenic 15.0%
!! TTAATAAACATTCACAATTT+GGG - chr4.1:79788091-79788110 MS.gene73307:intron 15.0%
!! TTTAATAAACATTCACAATT+TGG - chr4.1:79788090-79788109 MS.gene73307:intron 15.0%
!!! TTTTAACCATTTAAATAAGT+AGG - chr4.1:79789457-79789476 MS.gene73307:intron 15.0%
!! AAAAAAAAGTGATAAACTCT+AGG + chr4.1:79787901-79787920 None:intergenic 20.0%
!! AAAAATGGCAAAAAAAACAA+AGG - chr4.1:79787457-79787476 MS.gene73307:CDS 20.0%
!! AAATAGATGGAGAAAATATA+GGG - chr4.1:79787353-79787372 MS.gene73307:CDS 20.0%
!! AAATTCTTAAGTGGAAATAT+AGG + chr4.1:79789309-79789328 None:intergenic 20.0%
!! AATCAATATAGTAGAAGAAA+AGG - chr4.1:79789623-79789642 MS.gene73307:CDS 20.0%
!! ATCAACAAAAAAAAAAATGC+TGG - chr4.1:79789697-79789716 MS.gene73307:CDS 20.0%
!! ATCAATATAGTAGAAGAAAA+GGG - chr4.1:79789624-79789643 MS.gene73307:CDS 20.0%
!! GAGAGATAAAATAGAAATTA+GGG - chr4.1:79786915-79786934 MS.gene73307:CDS 20.0%
!! TGAGAGATAAAATAGAAATT+AGG - chr4.1:79786914-79786933 MS.gene73307:CDS 20.0%
!! TTATAATCAACTTTAATCCA+TGG + chr4.1:79789357-79789376 None:intergenic 20.0%
!!! AAATAACTTGTAACATTCAA+AGG + chr4.1:79788204-79788223 None:intergenic 20.0%
!!! TTGAATGTTACAAGTTATTT+TGG - chr4.1:79788204-79788223 MS.gene73307:intron 20.0%
!!! TTGTTGCTATATTTAAGTTA+TGG - chr4.1:79788136-79788155 MS.gene73307:intron 20.0%
!!! TTTAGAATTATGTTGTGAAT+TGG - chr4.1:79787169-79787188 MS.gene73307:CDS 20.0%
! AAAAACACGTTCAATGTAAT+GGG + chr4.1:79786672-79786691 None:intergenic 25.0%
! AAAGCAACATTATATGCTAT+TGG - chr4.1:79788924-79788943 MS.gene73307:intron 25.0%
! AGAGAGATTAGAAAAGAATT+CGG - chr4.1:79789518-79789537 MS.gene73307:intron 25.0%
! CATAAAAACAGAGATAATAG+AGG - chr4.1:79787393-79787412 MS.gene73307:CDS 25.0%
! CCAATATAACAGATGAATTA+TGG - chr4.1:79787671-79787690 MS.gene73307:intron 25.0%
! CCATAATTCATCTGTTATAT+TGG + chr4.1:79787674-79787693 None:intergenic 25.0%
! CTATAGCCTACTTATTTAAA+TGG + chr4.1:79789466-79789485 None:intergenic 25.0%
! GAAATAGATGGAGAAAATAT+AGG - chr4.1:79787352-79787371 MS.gene73307:CDS 25.0%
! GTACCATAATAACAATTAGT+GGG + chr4.1:79788726-79788745 None:intergenic 25.0%
! TAATAAACAGCCTAAGAAAT+TGG - chr4.1:79785951-79785970 MS.gene73307:intron 25.0%
! TCTCAAATTATTAACAGTGT+CGG + chr4.1:79786420-79786439 None:intergenic 25.0%
! TGGTGTACCATAAATTAAAA+GGG - chr4.1:79788058-79788077 MS.gene73307:intron 25.0%
! TGTACCATAATAACAATTAG+TGG + chr4.1:79788727-79788746 None:intergenic 25.0%
! TTCAAAATTGTATTTGTCAG+AGG + chr4.1:79788327-79788346 None:intergenic 25.0%
! TTCAGTGTAATTATATGTGT+CGG - chr4.1:79786451-79786470 MS.gene73307:intron 25.0%
! TTGGTGTACCATAAATTAAA+AGG - chr4.1:79788057-79788076 MS.gene73307:intron 25.0%
!! ACTAATTGTTATTATGGTAC+AGG - chr4.1:79788726-79788745 MS.gene73307:intron 25.0%
!! ACTTTTCTTACAATACCATT+AGG - chr4.1:79788513-79788532 MS.gene73307:intron 25.0%
!! CATCTAAAACCTTTATATTG+CGG - chr4.1:79787121-79787140 MS.gene73307:CDS 25.0%
!! CTAATTGTTATTATGGTACA+GGG - chr4.1:79788727-79788746 MS.gene73307:intron 25.0%
!! CTTTTCTTACAATACCATTA+GGG - chr4.1:79788514-79788533 MS.gene73307:intron 25.0%
!! TCCTTTTTAATGCAATAACA+AGG + chr4.1:79787050-79787069 None:intergenic 25.0%
!! TGAATGACAATTTTATCACT+TGG + chr4.1:79789580-79789599 None:intergenic 25.0%
!!! AAACTGTGTTTTTTAGCTTT+TGG - chr4.1:79786724-79786743 MS.gene73307:intron 25.0%
!!! ACCTTGTTATTGCATTAAAA+AGG - chr4.1:79787046-79787065 MS.gene73307:CDS 25.0%
!!! ATGTTCACCCTTTTAATTTA+TGG + chr4.1:79788068-79788087 None:intergenic 25.0%
!!! ATTATCTCTGTTTTTATGCT+TGG + chr4.1:79787391-79787410 None:intergenic 25.0%
!!! CTAAAAAACACAGTTTTGAA+TGG + chr4.1:79786720-79786739 None:intergenic 25.0%
!!! GTTTTTCTTTTTTTGAGTTG+TGG - chr4.1:79786686-79786705 MS.gene73307:intron 25.0%
AAAACACGTTCAATGTAATG+GGG + chr4.1:79786671-79786690 None:intergenic 30.0%
AATAGACAGGAAAGTAAAGA+GGG - chr4.1:79787765-79787784 MS.gene73307:intron 30.0%
AATATAGTAGAAGAAAAGGG+AGG - chr4.1:79789627-79789646 MS.gene73307:CDS 30.0%
ACAAACTAACATGACATCAT+GGG + chr4.1:79786944-79786963 None:intergenic 30.0%
AGAAAATATAGGGAAAACAG+AGG - chr4.1:79787363-79787382 MS.gene73307:CDS 30.0%
AGAATTATGTTGTGAATTGG+TGG - chr4.1:79787172-79787191 MS.gene73307:CDS 30.0%
AGATAATAGAGGAAAAACAG+AGG - chr4.1:79787404-79787423 MS.gene73307:CDS 30.0%
ATATGAATTGTTGGCATATG+AGG - chr4.1:79786532-79786551 MS.gene73307:intron 30.0%
ATCTATTGTCAAGAGAAGAA+AGG - chr4.1:79789492-79789511 MS.gene73307:intron 30.0%
ATGATTCTAAATTGCAGATG+TGG - chr4.1:79787012-79787031 MS.gene73307:CDS 30.0%
ATGCAAGAATTATCAGAAAG+TGG + chr4.1:79788969-79788988 None:intergenic 30.0%
GAAAAACACGTTCAATGTAA+TGG + chr4.1:79786673-79786692 None:intergenic 30.0%
GAATAAGCTAAGGTAAAAGT+GGG + chr4.1:79788011-79788030 None:intergenic 30.0%
GCATTAAAAAGGAGTAAATG+TGG - chr4.1:79787057-79787076 MS.gene73307:CDS 30.0%
GTAGAAGAAAAGATAAAGAG+AGG - chr4.1:79788795-79788814 MS.gene73307:intron 30.0%
TAATCAATGAAAGACGCATA+TGG - chr4.1:79789221-79789240 MS.gene73307:intron 30.0%
TAATCCATGGTTCTTGATTA+TGG + chr4.1:79789344-79789363 None:intergenic 30.0%
TACAAACTAACATGACATCA+TGG + chr4.1:79786945-79786964 None:intergenic 30.0%
TACCAAAACCAAATTGTTGT+AGG + chr4.1:79786804-79786823 None:intergenic 30.0%
TAGAGATAATAGTGGTTTCA+TGG - chr4.1:79789919-79789938 MS.gene73307:CDS 30.0%
TATGAATTGTTGGCATATGA+GGG - chr4.1:79786533-79786552 MS.gene73307:intron 30.0%
TCATAATTAACTAACACCTG+TGG + chr4.1:79787617-79787636 None:intergenic 30.0%
TCGTGTTTACATTCTTTCAA+CGG + chr4.1:79787279-79787298 None:intergenic 30.0%
TGAAAATGCCTACAACAATT+TGG - chr4.1:79786793-79786812 MS.gene73307:CDS 30.0%
TGAATAAGCTAAGGTAAAAG+TGG + chr4.1:79788012-79788031 None:intergenic 30.0%
TGACATAAGGAAGATTAAGA+TGG - chr4.1:79789842-79789861 MS.gene73307:CDS 30.0%
TGTCATCAATATTCAAGAAC+AGG + chr4.1:79785843-79785862 None:intergenic 30.0%
TTCAGATTTGAGTAAGTTAG+AGG - chr4.1:79786128-79786147 MS.gene73307:intron 30.0%
TTCTTAGGCTGTTTATTAGT+GGG + chr4.1:79785949-79785968 None:intergenic 30.0%
TTTCTTAGGCTGTTTATTAG+TGG + chr4.1:79785950-79785969 None:intergenic 30.0%
! AGGAGTGATTTCTAAGAAAA+AGG - chr4.1:79788815-79788834 MS.gene73307:intron 30.0%
! AGTAAGAACTAAGAGAGTTT+TGG - chr4.1:79787859-79787878 MS.gene73307:intron 30.0%
! CTTTTGTTAAGTCATAAGTC+AGG + chr4.1:79789254-79789273 None:intergenic 30.0%
! GAAAAGTTTTTAATAGGGAG+TGG - chr4.1:79789383-79789402 MS.gene73307:intron 30.0%
! GATGAATTATGGTTTGCATT+TGG - chr4.1:79787682-79787701 MS.gene73307:intron 30.0%
! GGGTTTTTGTTAACGAAAAT+GGG - chr4.1:79786022-79786041 MS.gene73307:intron 30.0%
! GTAAGAACTAAGAGAGTTTT+GGG - chr4.1:79787860-79787879 MS.gene73307:intron 30.0%
! GTATCAAAATGCTGCTTAAA+AGG - chr4.1:79787637-79787656 MS.gene73307:intron 30.0%
! GTATTGCTGATGCTTTAAAT+GGG - chr4.1:79786001-79786020 MS.gene73307:intron 30.0%
! TAAGAACTAAGAGAGTTTTG+GGG - chr4.1:79787861-79787880 MS.gene73307:intron 30.0%
! TATTGCTGATGCTTTAAATG+GGG - chr4.1:79786002-79786021 MS.gene73307:intron 30.0%
!!! ATGGTGGTTTTATTTTAGCA+TGG - chr4.1:79789861-79789880 MS.gene73307:CDS 30.0%
!!! TGGTGGTTTTATTTTAGCAT+GGG - chr4.1:79789862-79789881 MS.gene73307:CDS 30.0%
AAACACGTTCAATGTAATGG+GGG + chr4.1:79786670-79786689 None:intergenic 35.0%
AACTGCAATTTCAGCTGAAT+CGG + chr4.1:79787083-79787102 None:intergenic 35.0%
AAGTAAAGAGGGAAATAGAG+TGG - chr4.1:79787776-79787795 MS.gene73307:intron 35.0%
AATGTAGTTGGAGGGAATAA+GGG - chr4.1:79787821-79787840 MS.gene73307:intron 35.0%
ACAGAGTAACAGAATGTAGT+TGG - chr4.1:79787809-79787828 MS.gene73307:intron 35.0%
ACATAACATTGGAAAGCAAG+AGG - chr4.1:79786158-79786177 MS.gene73307:intron 35.0%
ACATTGCAAAAAAACTCCCT+AGG + chr4.1:79786624-79786643 None:intergenic 35.0%
ACCATCCAAAAGCTTTACAA+CGG + chr4.1:79788541-79788560 None:intergenic 35.0%
ACTCTATTAGGAGGATTAAC+TGG + chr4.1:79789410-79789429 None:intergenic 35.0%
AGAGAAGGTAGAGATAATAG+TGG - chr4.1:79789911-79789930 MS.gene73307:CDS 35.0%
AGTAACAGAATGTAGTTGGA+GGG - chr4.1:79787813-79787832 MS.gene73307:intron 35.0%
AGTGTAATTATATGTGTCGG+TGG - chr4.1:79786454-79786473 MS.gene73307:intron 35.0%
ATCAAACTCACTATCACTAG+TGG - chr4.1:79786281-79786300 MS.gene73307:intron 35.0%
ATTCATGCTTCCACATAAAG+TGG - chr4.1:79788027-79788046 MS.gene73307:intron 35.0%
ATTGCAAAAAAACTCCCTAG+GGG + chr4.1:79786622-79786641 None:intergenic 35.0%
ATTGGTTAACATGTTAGTCC+AGG - chr4.1:79787581-79787600 MS.gene73307:intron 35.0%
CAAACTAACATGACATCATG+GGG + chr4.1:79786943-79786962 None:intergenic 35.0%
CAATTGTTGCCGCAATATAA+AGG + chr4.1:79787133-79787152 None:intergenic 35.0%
CACAGTGTGAAATTCTTAAG+TGG + chr4.1:79789318-79789337 None:intergenic 35.0%
CACCATAGATAGACTCTATT+AGG + chr4.1:79789422-79789441 None:intergenic 35.0%
CACTTAAGAATTTCACACTG+TGG - chr4.1:79789316-79789335 MS.gene73307:intron 35.0%
CATAAGGAAGATTAAGATGG+TGG - chr4.1:79789845-79789864 MS.gene73307:CDS 35.0%
CATAGATAGACTCTATTAGG+AGG + chr4.1:79789419-79789438 None:intergenic 35.0%
CATTGCAAAAAAACTCCCTA+GGG + chr4.1:79786623-79786642 None:intergenic 35.0%
CCATAATAACAATTAGTGGG+TGG + chr4.1:79788723-79788742 None:intergenic 35.0%
CCTAAGAAATTGGATTCTGA+GGG - chr4.1:79785961-79785980 MS.gene73307:intron 35.0%
CCTAGAGTCAAAATCATTGA+GGG - chr4.1:79786890-79786909 MS.gene73307:CDS 35.0%
CTCCTAATAGAGTCTATCTA+TGG - chr4.1:79789417-79789436 MS.gene73307:intron 35.0%
CTCTATTAGGAGGATTAACT+GGG + chr4.1:79789409-79789428 None:intergenic 35.0%
CTTCATTTCCAGATCATCAA+GGG + chr4.1:79789018-79789037 None:intergenic 35.0%
GAACAAAGAAAATCCACCAA+AGG - chr4.1:79788359-79788378 MS.gene73307:intron 35.0%
GAATAGACAGGAAAGTAAAG+AGG - chr4.1:79787764-79787783 MS.gene73307:intron 35.0%
GTAGAGTTGAGAGAAATAGA+TGG - chr4.1:79787340-79787359 MS.gene73307:CDS 35.0%
GTGCTTCATATTCATGTGTT+GGG + chr4.1:79786347-79786366 None:intergenic 35.0%
GTGTGCTTCATATGAATTGT+TGG - chr4.1:79786523-79786542 MS.gene73307:intron 35.0%
GTGTTAACATCAATGTAGTC+AGG - chr4.1:79787226-79787245 MS.gene73307:CDS 35.0%
GTTGAAAGAATGTAAACACG+AGG - chr4.1:79787278-79787297 MS.gene73307:CDS 35.0%
GTTTGCATTTGGCATAGTAT+CGG - chr4.1:79787693-79787712 MS.gene73307:intron 35.0%
TAGTGTTCAGCGACTATAAT+GGG - chr4.1:79788760-79788779 MS.gene73307:intron 35.0%
TATTGTCAAGAGAAGAAAGG+TGG - chr4.1:79789495-79789514 MS.gene73307:intron 35.0%
TCAAACTCACTATCACTAGT+GGG - chr4.1:79786282-79786301 MS.gene73307:intron 35.0%
TCCTAGAGTCAAAATCATTG+AGG - chr4.1:79786889-79786908 MS.gene73307:CDS 35.0%
TCCTCAATCAAGTCAAAAGA+AGG - chr4.1:79788882-79788901 MS.gene73307:intron 35.0%
TGATGGAAAAAGAAGAGAGA+AGG - chr4.1:79789896-79789915 MS.gene73307:CDS 35.0%
TGTTAAGTCATAAGTCAGGT+TGG + chr4.1:79789250-79789269 None:intergenic 35.0%
TTCATATTCATGTGTTGGGT+CGG + chr4.1:79786343-79786362 None:intergenic 35.0%
TTCATTTCCAGATCATCAAG+GGG + chr4.1:79789017-79789036 None:intergenic 35.0%
TTGGTTAACATGTTAGTCCA+GGG - chr4.1:79787582-79787601 MS.gene73307:intron 35.0%
! CAGAATCTTGTTTGTACTTG+TGG - chr4.1:79785919-79785938 MS.gene73307:intron 35.0%
! CCACCCACTAATTGTTATTA+TGG - chr4.1:79788720-79788739 MS.gene73307:intron 35.0%
! GAAATGAAGGTGAAAAGCAT+CGG - chr4.1:79789029-79789048 MS.gene73307:intron 35.0%
! GGCTAGTTGTTAAAGTTATG+AGG - chr4.1:79788112-79788131 MS.gene73307:intron 35.0%
! GGGGTTTTTGTTAACGAAAA+TGG - chr4.1:79786021-79786040 MS.gene73307:intron 35.0%
! GGTATTGCTGATGCTTTAAA+TGG - chr4.1:79786000-79786019 MS.gene73307:intron 35.0%
! TTGGATGGTAACTCTTTTGT+TGG - chr4.1:79788552-79788571 MS.gene73307:intron 35.0%
! TTTTATCATGAACAACCCTC+TGG + chr4.1:79787941-79787960 None:intergenic 35.0%
!! AACATCCATTTTAACATCGC+TGG + chr4.1:79788418-79788437 None:intergenic 35.0%
!! AAGTCAAAAGAAGGTGTTGT+GGG - chr4.1:79788891-79788910 MS.gene73307:intron 35.0%
!! ATTGGTGGTCATTTTAGTCT+AGG - chr4.1:79787187-79787206 MS.gene73307:CDS 35.0%
!! CTTGGTGTCAATGTAAAAGA+TGG + chr4.1:79789562-79789581 None:intergenic 35.0%
!! GTATCGGTTAAGAACTTGAT+AGG - chr4.1:79787709-79787728 MS.gene73307:intron 35.0%
!! TGCCTACAACAATTTGGTTT+TGG - chr4.1:79786799-79786818 MS.gene73307:CDS 35.0%
!! TTGGTGGTCATTTTAGTCTA+GGG - chr4.1:79787188-79787207 MS.gene73307:CDS 35.0%
!! TTTGACTTGATTGAGGATCT+TGG + chr4.1:79788879-79788898 None:intergenic 35.0%
!!! ACCTTCTTTTGACTTGATTG+AGG + chr4.1:79788886-79788905 None:intergenic 35.0%
!!! GGTGGTTTTATTTTAGCATG+GGG - chr4.1:79789863-79789882 MS.gene73307:CDS 35.0%
ACAGAGGTCATCAAAGAACA+CGG + chr4.1:79786084-79786103 None:intergenic 40.0%
ACATGGACCTTCTTAATGAG+TGG + chr4.1:79787738-79787757 None:intergenic 40.0%
ACTGCTGATGCAAATTCCTT+TGG + chr4.1:79788378-79788397 None:intergenic 40.0%
ACTGTGATTCGACTTTACTC+TGG + chr4.1:79787501-79787520 None:intergenic 40.0%
ATGTAGTTGGAGGGAATAAG+GGG - chr4.1:79787822-79787841 MS.gene73307:intron 40.0%
CAAACTCACTATCACTAGTG+GGG - chr4.1:79786283-79786302 MS.gene73307:intron 40.0%
CAACAAAACAGAGGAAACAG+AGG - chr4.1:79787434-79787453 MS.gene73307:CDS 40.0%
CAGAGGAAACAGAGGAAAAA+TGG - chr4.1:79787442-79787461 MS.gene73307:CDS 40.0%
CATTAGGAATGTTGAGGAGT+TGG + chr4.1:79788689-79788708 None:intergenic 40.0%
CCCTCAGAATCCAATTTCTT+AGG + chr4.1:79785964-79785983 None:intergenic 40.0%
CCTTCATTTCCAGATCATCA+AGG + chr4.1:79789019-79789038 None:intergenic 40.0%
CTAGTGTTCAGCGACTATAA+TGG - chr4.1:79788759-79788778 MS.gene73307:intron 40.0%
CTGTTGCAATTCTCCTTCAT+GGG - chr4.1:79787983-79788002 MS.gene73307:intron 40.0%
GAAACTGGGTATCTAGCATA+AGG - chr4.1:79786241-79786260 MS.gene73307:intron 40.0%
GAATGTAGTTGGAGGGAATA+AGG - chr4.1:79787820-79787839 MS.gene73307:intron 40.0%
GAATTGCAACAGGAATGTGA+TGG + chr4.1:79787975-79787994 None:intergenic 40.0%
GAGGAAGTCACACATAACAT+TGG - chr4.1:79786147-79786166 MS.gene73307:intron 40.0%
GAGTAACAGAATGTAGTTGG+AGG - chr4.1:79787812-79787831 MS.gene73307:intron 40.0%
GATTCGACTTTACTCTGGTT+CGG + chr4.1:79787496-79787515 None:intergenic 40.0%
GCCTAAGAAATTGGATTCTG+AGG - chr4.1:79785960-79785979 MS.gene73307:intron 40.0%
GCTGCTTAAAAGGTAATGTG+TGG - chr4.1:79787647-79787666 MS.gene73307:intron 40.0%
GGTGCTTCATATTCATGTGT+TGG + chr4.1:79786348-79786367 None:intergenic 40.0%
GTACAAGACTATTGAGACCT+TGG - chr4.1:79788590-79788609 MS.gene73307:intron 40.0%
GTTGTGCATTAGGAATGTTG+AGG + chr4.1:79788695-79788714 None:intergenic 40.0%
GTTTGATCCACGGAATTAGT+CGG + chr4.1:79786268-79786287 None:intergenic 40.0%
TAGGAGACCACTCATTAAGA+AGG - chr4.1:79787728-79787747 MS.gene73307:intron 40.0%
TCATTTCCAGATCATCAAGG+GGG + chr4.1:79789016-79789035 None:intergenic 40.0%
TTGCACCAGCGATGTTAAAA+TGG - chr4.1:79788410-79788429 MS.gene73307:intron 40.0%
TTTGAACCTGAGACCTTGAT+AGG - chr4.1:79786557-79786576 MS.gene73307:intron 40.0%
! AAATTGGATTCTGAGGGTCA+GGG - chr4.1:79785967-79785986 MS.gene73307:intron 40.0%
! ATGAAGCACCAATACTGACA+CGG - chr4.1:79786358-79786377 MS.gene73307:intron 40.0%
! CCTTGATGATCTGGAAATGA+AGG - chr4.1:79789016-79789035 MS.gene73307:intron 40.0%
! GTGATAGTGAGTTTGATCCA+CGG + chr4.1:79786278-79786297 None:intergenic 40.0%
! GTGGAAGCATGAATAAGCTA+AGG + chr4.1:79788021-79788040 None:intergenic 40.0%
! TAACAATTAGTGGGTGGTTG+TGG + chr4.1:79788717-79788736 None:intergenic 40.0%
! TCCGTTGTAAAGCTTTTGGA+TGG - chr4.1:79788537-79788556 MS.gene73307:intron 40.0%
!! ATTTTAACATCGCTGGTGCA+AGG + chr4.1:79788411-79788430 None:intergenic 40.0%
!! CAAGTCAAAAGAAGGTGTTG+TGG - chr4.1:79788890-79788909 MS.gene73307:intron 40.0%
!! CGAAAATGGGTCGTTGTTTT+TGG - chr4.1:79786035-79786054 MS.gene73307:intron 40.0%
!! GTTTCCTCTGTTTTGTTGCT+TGG + chr4.1:79787432-79787451 None:intergenic 40.0%
!! TCTAGGGTTGGTTAAAACTC+AGG - chr4.1:79787204-79787223 MS.gene73307:CDS 40.0%
!! TGGAACGGTTGATGGAATTA+GGG - chr4.1:79786103-79786122 MS.gene73307:intron 40.0%
!! TGGTCATTTTAGTCTAGGGT+TGG - chr4.1:79787192-79787211 MS.gene73307:CDS 40.0%
!!! CCCTCAATGATTTTGACTCT+AGG + chr4.1:79786893-79786912 None:intergenic 40.0%
AGCTTTACAACGGACCCTAA+TGG + chr4.1:79788531-79788550 None:intergenic 45.0%
AGGTTAAGGTGTACTTGAGG+AGG + chr4.1:79788296-79788315 None:intergenic 45.0%
ATAAGGACCGACTAATTCCG+TGG - chr4.1:79786258-79786277 MS.gene73307:intron 45.0%
ATCGAGATCCTACGTAGGAT+CGG - chr4.1:79787249-79787268 MS.gene73307:CDS 45.0%
CAAAAAAACTCCCTAGGGGT+TGG + chr4.1:79786618-79786637 None:intergenic 45.0%
CCATGAAGGAGAATTGCAAC+AGG + chr4.1:79787985-79788004 None:intergenic 45.0%
CCATGTGAGACAGAATAGAC+AGG - chr4.1:79787752-79787771 MS.gene73307:intron 45.0%
CCTGTCTATTCTGTCTCACA+TGG + chr4.1:79787755-79787774 None:intergenic 45.0%
CCTGTTGCAATTCTCCTTCA+TGG - chr4.1:79787982-79788001 MS.gene73307:intron 45.0%
CTGAGGTAAGCGACTACTAT+TGG - chr4.1:79789057-79789076 MS.gene73307:intron 45.0%
CTTGGACTCTTCATTGTGCA+CGG - chr4.1:79788608-79788627 MS.gene73307:intron 45.0%
GACAACCAAACCATGGTGAT+AGG + chr4.1:79788662-79788681 None:intergenic 45.0%
GAGAGGTTAAGGTGTACTTG+AGG + chr4.1:79788299-79788318 None:intergenic 45.0%
GCACACACACTCCTCAAATT+AGG + chr4.1:79786509-79786528 None:intergenic 45.0%
GCTGATGCAAATTCCTTTGG+TGG + chr4.1:79788375-79788394 None:intergenic 45.0%
GGAACCAAGCAACAAAACAG+AGG - chr4.1:79787425-79787444 MS.gene73307:CDS 45.0%
GGACTCAATCTTGGCTACAT+TGG - chr4.1:79787563-79787582 MS.gene73307:intron 45.0%
GGAGCCATAATCAAGAACCA+TGG - chr4.1:79789337-79789356 MS.gene73307:intron 45.0%
GTAAAGTCGAATCACAGTCG+AGG - chr4.1:79787503-79787522 MS.gene73307:intron 45.0%
GTGTCTTCTGCTAGTCAGTT+TGG + chr4.1:79789186-79789205 None:intergenic 45.0%
TAAACACGAGGAACGTAACG+CGG - chr4.1:79787290-79787309 MS.gene73307:CDS 45.0%
TAGGCCAGGATTGAGTAACA+CGG + chr4.1:79788643-79788662 None:intergenic 45.0%
TCTGAGGGTCAGGGTAATAA+TGG - chr4.1:79785976-79785995 MS.gene73307:intron 45.0%
TCTGTTCCTATAGCTCCAGA+GGG - chr4.1:79787923-79787942 MS.gene73307:intron 45.0%
TCTTGGATCCAATGCAGTCA+AGG + chr4.1:79788862-79788881 None:intergenic 45.0%
TGCTTCCACATAAAGTGGCT+TGG - chr4.1:79788032-79788051 MS.gene73307:intron 45.0%
TGGGGACACAATTGAAGTCA+GGG - chr4.1:79786301-79786320 MS.gene73307:intron 45.0%
TTGCATCAGCAGTCAGAGTA+AGG - chr4.1:79788385-79788404 MS.gene73307:intron 45.0%
! AGGGTCCGTTGTAAAGCTTT+TGG - chr4.1:79788533-79788552 MS.gene73307:intron 45.0%
! CAAGACCAAGCCACTTTATG+TGG + chr4.1:79788040-79788059 None:intergenic 45.0%
! CTTTGATGACCTCTGTGGAA+CGG - chr4.1:79786088-79786107 MS.gene73307:intron 45.0%
! GAAATTGGATTCTGAGGGTC+AGG - chr4.1:79785966-79785985 MS.gene73307:intron 45.0%
! GGAATGTTGAGGAGTTGGTT+TGG + chr4.1:79788684-79788703 None:intergenic 45.0%
! GTGTTCTTTGATGACCTCTG+TGG - chr4.1:79786083-79786102 MS.gene73307:intron 45.0%
! GTTCAATGTAATGGGGGCAT+GGG + chr4.1:79786664-79786683 None:intergenic 45.0%
! TAGTCGCTGAACACTAGCTT+TGG + chr4.1:79788756-79788775 None:intergenic 45.0%
! TGGTTTGGACAACCAAACCA+TGG + chr4.1:79788669-79788688 None:intergenic 45.0%
!! CACATAAAGTGGCTTGGTCT+TGG - chr4.1:79788038-79788057 MS.gene73307:intron 45.0%
!! GTGGAACGGTTGATGGAATT+AGG - chr4.1:79786102-79786121 MS.gene73307:intron 45.0%
!! TGCTGGTTAATTTTCCGACG+CGG - chr4.1:79789714-79789733 MS.gene73307:CDS 45.0%
!!! TTATTTTAGCATGGGGCTGC+TGG - chr4.1:79789870-79789889 MS.gene73307:CDS 45.0%
AAGATTGAGTCCCAGCTCGT+AGG + chr4.1:79787555-79787574 None:intergenic 50.0%
ACACGATACGTATCGGACAC+TGG - chr4.1:79786477-79786496 MS.gene73307:intron 50.0%
ACCAAGAGCCTTGACTGCAT+TGG - chr4.1:79788851-79788870 MS.gene73307:intron 50.0%
ACCAATACTGACACGGACAC+CGG - chr4.1:79786365-79786384 MS.gene73307:intron 50.0%
ACCTGTGGTCTAACTAACCC+TGG + chr4.1:79787602-79787621 None:intergenic 50.0%
ACGCGGTTCGTAAGTAGGAT+CGG - chr4.1:79787307-79787326 MS.gene73307:CDS 50.0%
ACGTAACGCGGTTCGTAAGT+AGG - chr4.1:79787302-79787321 MS.gene73307:CDS 50.0%
ACTGGGACACGCCTAATTTG+AGG - chr4.1:79786495-79786514 MS.gene73307:intron 50.0%
AGATCCTACGTAGGATCGGT+TGG - chr4.1:79787253-79787272 MS.gene73307:CDS 50.0%
ATTTGTCAGAGGCTCACGAG+AGG + chr4.1:79788316-79788335 None:intergenic 50.0%
CACGATACGTATCGGACACT+GGG - chr4.1:79786478-79786497 MS.gene73307:intron 50.0%
CGTGCACAATGAAGAGTCCA+AGG + chr4.1:79788610-79788629 None:intergenic 50.0%
CTCTGTTCCTATAGCTCCAG+AGG - chr4.1:79787922-79787941 MS.gene73307:intron 50.0%
GAGGGTCAGGGTAATAATGG+TGG - chr4.1:79785979-79785998 MS.gene73307:intron 50.0%
GGTGGTTGTGGTTGTGCATT+AGG + chr4.1:79788705-79788724 None:intergenic 50.0%
GGTTCGTAAGTAGGATCGGT+AGG - chr4.1:79787311-79787330 MS.gene73307:CDS 50.0%
GTAAAAGTGGGAGCCCATGA+AGG + chr4.1:79787999-79788018 None:intergenic 50.0%
GTGGGGACACAATTGAAGTC+AGG - chr4.1:79786300-79786319 MS.gene73307:intron 50.0%
TACGAGCTGGGACTCAATCT+TGG - chr4.1:79787554-79787573 MS.gene73307:intron 50.0%
TCAATCCTGGCCTATCACCA+TGG - chr4.1:79788649-79788668 MS.gene73307:intron 50.0%
TCAGGATCGAGATCCTACGT+AGG - chr4.1:79787244-79787263 MS.gene73307:CDS 50.0%
TCCAATGCAGTCAAGGCTCT+TGG + chr4.1:79788855-79788874 None:intergenic 50.0%
TCGGTGGACACGATACGTAT+CGG - chr4.1:79786470-79786489 MS.gene73307:intron 50.0%
TTCCATCAACCGTTCCACAG+AGG + chr4.1:79786100-79786119 None:intergenic 50.0%
TTTCCAGATCATCAAGGGGG+AGG + chr4.1:79789013-79789032 None:intergenic 50.0%
! CGTTCAATGTAATGGGGGCA+TGG + chr4.1:79786665-79786684 None:intergenic 50.0%
! GTGTTGGGTCGGTTCATACA+GGG + chr4.1:79786332-79786351 None:intergenic 50.0%
! GTTAATTTTCCGACGCGGCT+GGG - chr4.1:79789719-79789738 MS.gene73307:CDS 50.0%
! TGTGTTGGGTCGGTTCATAC+AGG + chr4.1:79786333-79786352 None:intergenic 50.0%
!! GAAAAGCATCGGTGAAGCTG+AGG - chr4.1:79789040-79789059 MS.gene73307:intron 50.0%
!! GAACAACCCTCTGGAGCTAT+AGG + chr4.1:79787932-79787951 None:intergenic 50.0%
!! TCCAGGGTTAGTTAGACCAC+AGG - chr4.1:79787598-79787617 MS.gene73307:intron 50.0%
CAGAGGCTCACGAGAGGTTA+AGG + chr4.1:79788310-79788329 None:intergenic 55.0%
CATGGGGCTGCTGGAATTGA+TGG - chr4.1:79789879-79789898 MS.gene73307:CDS 55.0%
CCAAACCATGGTGATAGGCC+AGG + chr4.1:79788657-79788676 None:intergenic 55.0%
CCTGGCCTATCACCATGGTT+TGG - chr4.1:79788654-79788673 MS.gene73307:intron 55.0%
GACCTCTGTGGAACGGTTGA+TGG - chr4.1:79786095-79786114 MS.gene73307:intron 55.0%
GTCGTGTGATCCTACGAGCT+GGG - chr4.1:79787542-79787561 MS.gene73307:intron 55.0%
GTTAGTGTCCGTGTCGTGTC+CGG + chr4.1:79786394-79786413 None:intergenic 55.0%
TCCGGTGTCCGTGTCAGTAT+TGG + chr4.1:79786369-79786388 None:intergenic 55.0%
TGCGCTCCTATCAAGGTCTC+AGG + chr4.1:79786566-79786585 None:intergenic 55.0%
! CAAGGAGTGCGCTCCTATCA+AGG + chr4.1:79786573-79786592 None:intergenic 55.0%
! CGCTCCGTGTTACTCAATCC+TGG - chr4.1:79788636-79788655 MS.gene73307:intron 55.0%
! CTTGATAGGAGCGCACTCCT+TGG - chr4.1:79786571-79786590 MS.gene73307:intron 55.0%
! GGTTAATTTTCCGACGCGGC+TGG - chr4.1:79789718-79789737 MS.gene73307:CDS 55.0%
!! GAATCACAGTCGAGGTGCTG+TGG - chr4.1:79787511-79787530 MS.gene73307:intron 55.0%
ACGGCCAACCGATCCTACGT+AGG + chr4.1:79787260-79787279 None:intergenic 60.0%
GGTCGTGTGATCCTACGAGC+TGG - chr4.1:79787541-79787560 MS.gene73307:intron 60.0%
GTGGTGAAGGCTTGGGTCCA+AGG + chr4.1:79786591-79786610 None:intergenic 60.0%
TTCCGACCACCACTTCACGC+CGG + chr4.1:79789752-79789771 None:intergenic 60.0%
! GAGCCTCCCCCTTGATGATC+TGG - chr4.1:79789007-79789026 MS.gene73307:intron 60.0%
! TGGCCTGGTGGTGAAGGCTT+GGG + chr4.1:79786598-79786617 None:intergenic 60.0%
! TTGGCCTGGTGGTGAAGGCT+TGG + chr4.1:79786599-79786618 None:intergenic 60.0%
!! AAACTCCCTAGGGGTTGGCC+TGG + chr4.1:79786613-79786632 None:intergenic 60.0%
!! TCGAGGTGCTGTGGCACGTA+AGG - chr4.1:79787520-79787539 MS.gene73307:intron 60.0%
ACCGGACACCGGACACGACA+CGG - chr4.1:79786383-79786402 MS.gene73307:intron 65.0%
CACCACCAGGCCAACCCCTA+GGG - chr4.1:79786605-79786624 MS.gene73307:intron 65.0%
CTCCGGCGTGAAGTGGTGGT+CGG - chr4.1:79789747-79789766 MS.gene73307:CDS 65.0%
CTGACACGGACACCGGACAC+CGG - chr4.1:79786372-79786391 MS.gene73307:intron 65.0%
GGACCCAAGCCTTCACCACC+AGG - chr4.1:79786592-79786611 MS.gene73307:intron 65.0%
TCACCACCAGGCCAACCCCT+AGG - chr4.1:79786604-79786623 MS.gene73307:intron 65.0%
TCCGTGTCGTGTCCGGTGTC+CGG + chr4.1:79786387-79786406 None:intergenic 65.0%
TGACCTCCGGCGTGAAGTGG+TGG - chr4.1:79789743-79789762 MS.gene73307:CDS 65.0%
!! AGGGGTTGGCCTGGTGGTGA+AGG + chr4.1:79786604-79786623 None:intergenic 65.0%
CGACCACCACTTCACGCCGG+AGG + chr4.1:79789749-79789768 None:intergenic 70.0%
GGCTGACCTCCGGCGTGAAG+TGG - chr4.1:79789740-79789759 MS.gene73307:CDS 70.0%
!! CTCCCTAGGGGTTGGCCTGG+TGG + chr4.1:79786610-79786629 None:intergenic 70.0%
GACGCGGCTGGGCTGACCTC+CGG - chr4.1:79789730-79789749 MS.gene73307:CDS 75.0%
GGAGGTCAGCCCAGCCGCGT+CGG + chr4.1:79789731-79789750 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 79785835 79789953 79785835 ID=MS.gene73307
chr4.1 mRNA 79785835 79789953 79785835 ID=MS.gene73307.t1;Parent=MS.gene73307
chr4.1 exon 79789609 79789953 79789609 ID=MS.gene73307.t1.exon1;Parent=MS.gene73307.t1
chr4.1 CDS 79789609 79789953 79789609 ID=cds.MS.gene73307.t1;Parent=MS.gene73307.t1
chr4.1 exon 79786727 79787503 79786727 ID=MS.gene73307.t1.exon2;Parent=MS.gene73307.t1
chr4.1 CDS 79786727 79787503 79786727 ID=cds.MS.gene73307.t1;Parent=MS.gene73307.t1
chr4.1 exon 79785835 79785909 79785835 ID=MS.gene73307.t1.exon3;Parent=MS.gene73307.t1
chr4.1 CDS 79785835 79785909 79785835 ID=cds.MS.gene73307.t1;Parent=MS.gene73307.t1
Gene Sequence

>MS.gene73307

ATGAACCTGTTCTTGAATATTGATGACACTGAATCATCAAGTAAGTTTTTTGTGTGTGATGCTTGTTACAAGTTTACGACTTTACAGAATCTTGTTTGTACTTGTGGAAAACCCACTAATAAACAGCCTAAGAAATTGGATTCTGAGGGTCAGGGTAATAATGGTGGTATTGCTGATGCTTTAAATGGGGTTTTTGTTAACGAAAATGGGTCGTTGTTTTTGGTGTTTGATGATTTGAAGATTGTGCCGTGTTCTTTGATGACCTCTGTGGAACGGTTGATGGAATTAGGGTATTCAGATTTGAGTAAGTTAGAGGAAGTCACACATAACATTGGAAAGCAAGAGGTAATTGTGTTGTGTTTTGTATTGTACACTGAATTTTGCAATGTGTATTTTTTTTTTTTTTGAAACTGGGTATCTAGCATAAGGACCGACTAATTCCGTGGATCAAACTCACTATCACTAGTGGGGACACAATTGAAGTCAGGGAAAAACCCTGTATGAACCGACCCAACACATGAATATGAAGCACCAATACTGACACGGACACCGGACACCGGACACGACACGGACACTAACATGCCGACACTGTTAATAATTTGAGAAAATCACATAATTCAGTGTAATTATATGTGTCGGTGGACACGATACGTATCGGACACTGGGACACGCCTAATTTGAGGAGTGTGTGTGCTTCATATGAATTGTTGGCATATGAGGGATTTGAACCTGAGACCTTGATAGGAGCGCACTCCTTGGACCCAAGCCTTCACCACCAGGCCAACCCCTAGGGAGTTTTTTTGCAATGTGTATTTATCTCGCAATTCCCATGCCCCCATTACATTGAACGTGTTTTTCTTTTTTTGAGTTGTGGTGAATATGCCATTCAAAACTGTGTTTTTTAGCTTTTGGCATTGATGATTCGAATGAACTTATAGCATCATTTGAATCACGATATTGAAAATGCCTACAACAATTTGGTTTTGGTACACATTGTAAACACCTTAAGTAATTATGAATCATTAAGGAAAAGATTCAAGATTTCTCTATTGAATCCTAGAGTCAAAATCATTGAGGGTTGAGAGATAAAATAGAAATTAGGGAACCCCATGATGTCATGTTAGTTTGTAGAGTAATAAAAATTTGAAAAAAAGTATCTGAAATAAAATTTTCAGTCATGATTCTAAATTGCAGATGTGGTTACAATGTGAACCTTGTTATTGCATTAAAAAGGAGTAAATGTGGCCGATTCAGCTGAAATTGCAGTTGTGACGTTGTTGCAGAGACATCTAAAACCTTTATATTGCGGCAACAATTGCAATTGCAGAGCGCAATTTAGAATTATGTTGTGAATTGGTGGTCATTTTAGTCTAGGGTTGGTTAAAACTCAGGTGTTAACATCAATGTAGTCAGGATCGAGATCCTACGTAGGATCGGTTGGCCGTTGAAAGAATGTAAACACGAGGAACGTAACGCGGTTCGTAAGTAGGATCGGTAGGATGTCAGTAGAGTTGAGAGAAATAGATGGAGAAAATATAGGGAAAACAGAGGAACCAAGCATAAAAACAGAGATAATAGAGGAAAAACAGAGGAACCAAGCAACAAAACAGAGGAAACAGAGGAAAAATGGCAAAAAAAACAAAGGAAACAGAGCAAAACCGAACCAGAGTAAAGTCGAATCACAGTCGAGGTGCTGTGGCACGTAAGGTCGTGTGATCCTACGAGCTGGGACTCAATCTTGGCTACATTGGTTAACATGTTAGTCCAGGGTTAGTTAGACCACAGGTGTTAGTTAATTATGAGTATCAAAATGCTGCTTAAAAGGTAATGTGTGGACCAATATAACAGATGAATTATGGTTTGCATTTGGCATAGTATCGGTTAAGAACTTGATAGGAGACCACTCATTAAGAAGGTCCATGTGAGACAGAATAGACAGGAAAGTAAAGAGGGAAATAGAGTGGTTATACACTGACAGAGTAACAGAATGTAGTTGGAGGGAATAAGGGGATGTTGCAGAAGTAAGTAAGAACTAAGAGAGTTTTGGGGCACTTTTGAATTAGCCTAGAGTTTATCACTTTTTTTTGCTCTGTTCCTATAGCTCCAGAGGGTTGTTCATGATAAAATTCTTCTTTTTCCATCACATTCCTGTTGCAATTCTCCTTCATGGGCTCCCACTTTTACCTTAGCTTATTCATGCTTCCACATAAAGTGGCTTGGTCTTGGTGTACCATAAATTAAAAGGGTGAACATTATTTAATAAACATTCACAATTTGGGCTAGTTGTTAAAGTTATGAGGCTTGTTGCTATATTTAAGTTATGGAAACACTATAAATCTTGAGTTAGAAATTGTTAGTAATTATGTCCTTTGAATGTTACAAGTTATTTTGGTTGTAATTAAAATATCTTGCATAATATCTTGTACTTACAAGTTATTTTGATGTAACAGATACTGAACCTCCTCAAGTACACCTTAACCTCTCGTGAGCCTCTGACAAATACAATTTTGAAAAGTAGCTCAAAGAACAAAGAAAATCCACCAAAGGAATTTGCATCAGCAGTCAGAGTAAGGCCTTGCACCAGCGATGTTAAAATGGATGTTAAGCTTGCACGAAGTAAATCTCAGAAAAAAATAATATTCGCAGAAGCGAGTGAAAACTTTGTTGATTTCATTTTCACTTTTCTTACAATACCATTAGGGTCCGTTGTAAAGCTTTTGGATGGTAACTCTTTTGTTGGATGTGTTGATAATTTGTACAAGACTATTGAGACCTTGGACTCTTCATTGTGCACGGACTCGCGCTCCGTGTTACTCAATCCTGGCCTATCACCATGGTTTGGTTGTCCAAACCAACTCCTCAACATTCCTAATGCACAACCACAACCACCCACTAATTGTTATTATGGTACAGGGACGCCAAAGCTAGTGTTCAGCGACTATAATGGGAGTCATCAAATTGTAGAAGAAAAGATAAAGAGAGGAGTGATTTCTAAGAAAAAGGTATCAATTTATAAACCAAGAGCCTTGACTGCATTGGATCCAAGATCCTCAATCAAGTCAAAAGAAGGTGTTGTGGGATTTGTGAAGAAAGCAACATTATATGCTATTGGAGATGATCTAACAGTAAAACCACTTTCTGATAATTCTTGCATTTCATATTTGAAAGAATTGAGCCTCCCCCTTGATGATCTGGAAATGAAGGTGAAAAGCATCGGTGAAGCTGAGGTAAGCGACTACTATTGGTTCTTAAATGTGTGAGACAGTATATTACTATAGTTCTGCGTGTATCGAAATTACATAAAATACATAAAAACATTCATCAAGTCTTTTATTTGTAATTTATGAACCAAACTGACTAGCAGAAGACACATTTGAGAATCAAACTAATCAATGAAAGACGCATATGGAAACCAACCTGACTTATGACTTAACAAAAGAAACATTCATGTATGTTCTTGTAATCAAAACACCTATATTTCCACTTAAGAATTTCACACTGTGGAGCCATAATCAAGAACCATGGATTAAAGTTGATTATAATAATTAGAAAAGTTTTTAATAGGGAGTGGCCCAGTTAATCCTCCTAATAGAGTCTATCTATGGTGTATTCAATGCTGAGTTTTTAACCATTTAAATAAGTAGGCTATAGTTTAGCATCTATTGTCAAGAGAAGAAAGGTGGAGAGAGATTAGAAAAGAATTCGGCAGAATGAATAGAAAAAGCCATCTTTTACATTGACACCAAGTGATAAAATTGTCATTCAAAAACATAAGAGAATTGTTCAAAAATCAATATAGTAGAAGAAAAGGGAGGAAATGAGCATAAAAGAAAATGTAAGAGTTTAAATCTAACAATAGAAAATCAACAAAAAAAAAAATGCTGGTTAATTTTCCGACGCGGCTGGGCTGACCTCCGGCGTGAAGTGGTGGTCGGAAAATGAAGAAATTGACAGTCTCAGAAATGAAACTTCGTAGATCTGAGAAATAAAGATGACAATTTTATAGATGACATAAGGAAGATTAAGATGGTGGTTTTATTTTAGCATGGGGCTGCTGGAATTGATGGAAAAAGAAGAGAGAAGGTAGAGATAATAGTGGTTTCATGGTATTCCCAGTGA
Protein sequence

>MS.gene73307.t1

MNLFLNIDDTESSSKFFVCDACYKFTTLQNLVCTCGKPTNKQPKKLDSEGQGNNGGIADALNGVFVNENGSLFLVFDDLKIVPCSLMTSVERLMELGYSDLSKLEEVTHNIGKQEILNLLKYTLTSREPLTNTILKSSSKNKENPPKEFASAVRVRPCTSDVKMDVKLARSKSQKKIIFAEASENFVDFIFTFLTIPLGSVVKLLDGNSFVGCVDNLYKTIETLDSSLCTDSRSVLLNPGLSPWFGCPNQLLNIPNAQPQPPTNCYYGTGTPKLVFSDYNGSHQIVEEKIKRGVISKKKVSIYKPRALTALDPRSSIKSKEGVVGFVKKATLYAIGDDLTVKPLSDNSCISYLKELSLPLDDLEMKVKSIGEAEHGAAGIDGKRREKVEIIVVSWYSQ