AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055191

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055191.t1 MTR_7g063670 85.621 459 65 1 18 476 1 458 0.0 765
MS.gene055191.t1 MTR_3g007740 64.488 459 135 6 24 470 1 443 0.0 545
MS.gene055191.t1 MTR_7g062280 49.497 497 189 10 30 476 8 492 2.73e-141 415
MS.gene055191.t1 MTR_7g063840 51.340 485 182 13 29 476 7 474 1.39e-137 404
MS.gene055191.t1 MTR_7g062300 50.415 482 177 13 30 468 10 472 9.10e-136 400
MS.gene055191.t1 MTR_7g063880 50.000 488 175 14 29 475 9 468 7.87e-133 392
MS.gene055191.t1 MTR_7g063660 49.072 485 196 12 30 476 7 478 1.42e-131 389
MS.gene055191.t1 MTR_7g063920 47.292 480 169 8 30 476 9 437 4.11e-126 374
MS.gene055191.t1 MTR_7g063900 48.893 497 193 11 28 476 6 489 1.84e-125 374
MS.gene055191.t1 MTR_7g063820 47.862 491 201 10 29 476 7 485 2.63e-123 369
MS.gene055191.t1 MTR_7g063830 49.138 464 189 10 31 475 9 444 6.33e-121 361
MS.gene055191.t1 MTR_7g063890 47.454 491 202 12 30 475 25 504 3.24e-109 333
MS.gene055191.t1 MTR_7g066570 39.184 490 237 14 30 473 10 484 6.39e-94 295
MS.gene055191.t1 MTR_7g066260 39.301 458 246 9 33 469 16 462 1.16e-87 277
MS.gene055191.t1 MTR_7g066410 37.597 516 241 13 29 471 7 514 1.67e-87 277
MS.gene055191.t1 MTR_7g066430 39.315 496 227 10 33 469 5 485 1.49e-86 274
MS.gene055191.t1 MTR_7g066480 39.394 462 210 12 33 475 17 427 9.94e-86 270
MS.gene055191.t1 MTR_7g066490 40.043 462 193 13 33 475 17 413 1.58e-80 256
MS.gene055191.t1 MTR_7g012680 38.571 490 211 17 30 476 10 452 1.36e-79 254
MS.gene055191.t1 MTR_7g063690 51.986 277 78 4 21 297 1 222 6.78e-79 246
MS.gene055191.t1 MTR_3g065200 39.610 462 184 17 33 456 4 408 8.48e-79 253
MS.gene055191.t1 MTR_7g066340 37.634 465 246 12 30 469 8 453 6.95e-78 251
MS.gene055191.t1 MTR_7g058710 37.219 489 245 12 33 476 13 484 2.89e-76 247
MS.gene055191.t1 MTR_7g066350 36.034 469 262 11 30 476 5 457 7.98e-71 232
MS.gene055191.t1 MTR_1g041315 37.446 462 231 18 30 453 10 451 2.15e-70 232
MS.gene055191.t1 MTR_7g058700 37.639 449 213 10 44 476 531 928 4.04e-70 240
MS.gene055191.t1 MTR_7g066290 37.086 453 234 8 33 469 16 433 4.94e-69 227
MS.gene055191.t1 MTR_7g066360 37.826 460 240 14 30 466 10 446 4.25e-67 223
MS.gene055191.t1 MTR_7g066580 33.745 486 233 12 38 472 1 448 2.56e-64 215
MS.gene055191.t1 MTR_7g066400 34.267 464 231 15 33 465 13 433 3.59e-63 212
MS.gene055191.t1 MTR_4g019310 34.059 505 264 19 29 476 5 497 7.89e-61 207
MS.gene055191.t1 MTR_7g066310 32.314 458 207 12 33 469 8 383 5.00e-57 194
MS.gene055191.t1 MTR_7g063720 44.355 248 105 7 247 476 1 233 5.64e-50 171
MS.gene055191.t1 MTR_7g063720 27.350 234 135 10 34 256 25 234 4.30e-12 66.2
MS.gene055191.t1 MTR_7g063850 40.196 306 140 7 195 475 1 288 6.54e-50 172
MS.gene055191.t1 MTR_2g029400 31.624 468 202 12 33 459 15 405 6.59e-50 176
MS.gene055191.t1 MTR_4g017410 31.429 490 280 15 33 475 10 490 6.89e-43 159
MS.gene055191.t1 MTR_7g062270 43.850 187 88 3 29 203 7 188 1.45e-41 152
MS.gene055191.t1 MTR_4g017610 30.417 480 265 16 35 465 16 475 3.22e-40 151
MS.gene055191.t1 MTR_4g017470 29.515 515 252 15 28 475 6 476 6.20e-40 150
MS.gene055191.t1 MTR_4g019340 29.747 474 279 14 30 457 36 501 1.09e-39 150
MS.gene055191.t1 MTR_7g063760 86.486 74 10 0 403 476 1 74 8.56e-38 133
MS.gene055191.t1 MTR_7g066280 30.508 413 220 11 100 469 2 390 1.76e-37 142
MS.gene055191.t1 MTR_1g014060 41.981 212 104 6 45 243 13 218 8.49e-37 140
MS.gene055191.t1 MTR_1g014060 37.158 183 108 4 300 476 210 391 7.94e-21 94.7
MS.gene055191.t1 MTR_8g023240 25.270 463 299 11 30 461 35 481 4.85e-36 140
MS.gene055191.t1 MTR_4g017440 27.907 516 285 16 29 475 11 508 7.07e-36 139
MS.gene055191.t1 MTR_4g017830 32.132 333 191 11 25 332 7 329 1.16e-33 133
MS.gene055191.t1 MTR_7g100420 34.076 314 169 7 176 465 94 393 1.59e-32 128
MS.gene055191.t1 MTR_7g100420 73.913 46 12 0 30 75 37 82 1.31e-12 69.7
MS.gene055191.t1 MTR_7g066680 34.426 305 129 10 225 465 37 334 1.06e-30 122
MS.gene055191.t1 MTR_7g063750 77.612 67 15 0 380 446 1 67 5.32e-27 108
MS.gene055191.t1 MTR_4g017550 27.447 470 258 19 61 466 20 470 3.72e-25 108
MS.gene055191.t1 MTR_4g017550 30.151 199 113 6 19 196 231 424 1.74e-13 72.8
MS.gene055191.t1 MTR_1g115440 31.092 238 126 9 33 245 12 236 2.46e-18 84.7
MS.gene055191.t1 MTR_8g445860 30.417 240 122 7 33 245 14 235 4.06e-17 81.3
MS.gene055191.t1 MTR_0150s0010 29.289 239 129 8 33 245 11 235 1.17e-15 76.6
MS.gene055191.t1 MTR_7g066390 34.615 156 65 3 312 467 2 120 1.29e-14 71.6
MS.gene055191.t1 MTR_7g063870 49.315 73 37 0 160 232 85 157 5.51e-14 72.4
MS.gene055191.t1 MTR_7g063870 58.491 53 22 0 30 82 29 81 1.15e-11 65.5
MS.gene055191.t1 MTR_1g115455 31.148 244 114 11 33 245 10 230 7.00e-13 68.6
MS.gene055191.t1 MTR_1g115450 33.051 118 63 4 33 141 8 118 8.50e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055191.t1 AT5G01130 30.753 478 269 15 29 476 6 451 4.42e-50 177
MS.gene055191.t1 AT3G09110 33.648 318 189 6 34 335 11 322 8.43e-47 166
MS.gene055191.t1 AT5G01120 30.722 485 277 15 32 465 9 485 9.37e-47 169
MS.gene055191.t1 AT5G43240 30.426 493 278 15 29 465 6 489 3.91e-43 159
MS.gene055191.t1 AT5G43240 30.426 493 278 15 29 465 6 489 3.91e-43 159
MS.gene055191.t1 AT5G43240 30.426 493 278 15 29 465 6 489 3.91e-43 159
MS.gene055191.t1 AT5G01150 28.515 505 280 13 29 476 6 486 1.13e-42 158
MS.gene055191.t1 AT3G09140 30.616 503 282 18 29 474 6 498 2.86e-42 157
MS.gene055191.t1 AT5G01140 28.512 484 277 15 30 476 7 458 6.27e-39 147
MS.gene055191.t1 AT3G09140 28.518 533 282 18 29 474 6 526 1.41e-38 147
MS.gene055191.t1 AT3G09120 33.232 328 172 11 29 325 3 314 1.36e-36 137
MS.gene055191.t1 AT5G37320 27.708 480 300 13 32 471 9 481 3.41e-33 131

Find 60 sgRNAs with CRISPR-Local

Find 89 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATCAAAGTGTTGAAAATA+TGG 0.172991 7.4:+40382343 MS.gene055191:CDS
TGATGAAGATTGCAGGGATA+TGG 0.249095 7.4:+40383278 MS.gene055191:CDS
AAGTCTGTTCTTTGCTTCTT+TGG 0.252503 7.4:-40383193 None:intergenic
AAAGACACTACTTGCTCTTT+AGG 0.263969 7.4:-40382152 None:intergenic
TCCGTAACCACATACATTTC+TGG 0.265897 7.4:-40383378 None:intergenic
AGTAGTGTCTTTGAAACTTC+TGG 0.299647 7.4:+40382163 MS.gene055191:CDS
AGTTCTTTCGTCAGTATTGA+TGG 0.308626 7.4:+40383123 MS.gene055191:CDS
AACAAAATCTTTATCTGCTT+CGG 0.321742 7.4:-40382216 None:intergenic
CAAAACTTCTCTTAATGATC+TGG 0.348610 7.4:+40383461 MS.gene055191:CDS
GGTCTCTTGACACAACTTCC+AGG 0.352133 7.4:-40383357 None:intergenic
AGTATATATATAGATGAAAC+TGG 0.371045 7.4:-40383429 None:intergenic
TTGAGACAACCAATTGTAAC+TGG 0.379686 7.4:-40382314 None:intergenic
TTTGATCTGACCAACAACTT+TGG 0.418280 7.4:+40382668 MS.gene055191:CDS
AAACTTTAGCAAAATGCAAT+TGG 0.421141 7.4:+40383302 MS.gene055191:CDS
ACCAGAAATGTATGTGGTTA+CGG 0.427323 7.4:+40383377 MS.gene055191:CDS
TATCAAAGTGTTGAAAATAT+GGG 0.428829 7.4:+40382344 MS.gene055191:CDS
ATAAAAGAAGTCTTCATACT+TGG 0.436601 7.4:-40382459 None:intergenic
AGCTTCTTAACATTACCATT+AGG 0.442668 7.4:+40382251 MS.gene055191:CDS
ACACCGCATGCAGGAAGTCC+TGG 0.443991 7.4:+40383339 MS.gene055191:CDS
AACTGTCTTGCCGCATTCCA+TGG 0.447531 7.4:+40382634 MS.gene055191:CDS
GATGAAGATTGCAGGGATAT+GGG 0.448666 7.4:+40383279 MS.gene055191:CDS
AGTCTTGCAATGGTTCCTAA+TGG 0.456662 7.4:-40382266 None:intergenic
GCAGAGTCACAGCATATTCA+AGG 0.465891 7.4:+40383781 MS.gene055191:intron
GGAACATATAAAGTACTTTG+TGG 0.467805 7.4:-40382438 None:intergenic
AATATCGAACCAGTTACAAT+TGG 0.468192 7.4:+40382305 MS.gene055191:CDS
GAACATATAAAGTACTTTGT+GGG 0.479237 7.4:-40382437 None:intergenic
CACATCGGTTAGAGGTGTCT+TGG 0.479432 7.4:-40382884 None:intergenic
CTTGTTAACACAAATTAAGA+AGG 0.481190 7.4:+40383847 MS.gene055191:CDS
CAATGCTCTTATTTGAGCAT+AGG 0.498826 7.4:+40382482 MS.gene055191:CDS
TCCTGCATGCGGTGTGGCAA+TGG 0.507826 7.4:-40383331 None:intergenic
GATAGTATATTGTATGCTCA+AGG 0.514909 7.4:+40383021 MS.gene055191:CDS
TGCTCTTATTTGAGCATAGG+TGG 0.516705 7.4:+40382485 MS.gene055191:CDS
AAAATTGTTGTCCATTCTGT+GGG 0.519260 7.4:+40382513 MS.gene055191:CDS
TCAACGTCTGCTCTAACAAA+TGG 0.520066 7.4:+40383815 MS.gene055191:CDS
ATCAAAGATCGTGTGATCCA+TGG 0.521919 7.4:-40382651 None:intergenic
AATTACCTCTTTGATGCCAA+TGG 0.525143 7.4:-40383499 None:intergenic
GGTCAATGTCACAAAGGAAA+AGG 0.529128 7.4:+40382724 MS.gene055191:CDS
TAATTTGTGTTAACAAGTGA+CGG 0.537543 7.4:-40383841 None:intergenic
AATTGTCTGGAAAACTGAAA+GGG 0.541574 7.4:-40382558 None:intergenic
AAATTGTCTGGAAAACTGAA+AGG 0.548315 7.4:-40382559 None:intergenic
ACCATTGCCACACCGCATGC+AGG 0.564030 7.4:+40383330 MS.gene055191:CDS
AGGGAAACTGAACGCGACAA+TGG 0.565086 7.4:-40382539 None:intergenic
GACAATGGATTCCCACAGAA+TGG 0.569238 7.4:-40382524 None:intergenic
AACCTCGTATCGAGAGATCA+AGG 0.573455 7.4:+40382920 MS.gene055191:CDS
TAGTATATTGTATGCTCAAG+GGG 0.574877 7.4:+40383023 MS.gene055191:CDS
TTTCTGAATAAGTCTTGCAA+TGG 0.578241 7.4:-40382276 None:intergenic
AACTTCTCTTAATGATCTGG+AGG 0.587581 7.4:+40383464 MS.gene055191:CDS
ATAGTATATTGTATGCTCAA+GGG 0.590230 7.4:+40383022 MS.gene055191:CDS
TTGCGTAAAACTCCACCCAA+TGG 0.594851 7.4:-40383087 None:intergenic
ATCCTTGATCTCTCGATACG+AGG 0.621136 7.4:-40382922 None:intergenic
AGGACTTCCTGCATGCGGTG+TGG 0.622997 7.4:-40383337 None:intergenic
AAGTTTGATCAAAGAAATGA+CGG 0.624707 7.4:+40382703 MS.gene055191:CDS
CAAGAGACCAGAAATGTATG+TGG 0.625409 7.4:+40383371 MS.gene055191:CDS
ATCGTGTGATCCATGGAATG+CGG 0.667948 7.4:-40382644 None:intergenic
TGTCACCATTGGCATCAAAG+AGG 0.672938 7.4:+40383494 MS.gene055191:CDS
CTTCCAGGACTTCCTGCATG+CGG 0.682890 7.4:-40383342 None:intergenic
AATGACGGTCAATGTCACAA+AGG 0.683087 7.4:+40382718 MS.gene055191:CDS
AGTATATTGTATGCTCAAGG+GGG 0.692419 7.4:+40383024 MS.gene055191:CDS
GTATATTGTATGCTCAAGGG+GGG 0.692996 7.4:+40383025 MS.gene055191:CDS
GATGAAACTGGAGACAACAA+CGG 0.697583 7.4:-40383417 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTATATATATAGATGAAAC+TGG - chr7.4:40383432-40383451 None:intergenic 20.0%
!! ATCAAAGTGGTAATTATTTA+AGG + chr7.4:40383537-40383556 MS.gene055191:intron 20.0%
!! ATGAATATCATCACTAAAAA+TGG - chr7.4:40382968-40382987 None:intergenic 20.0%
!!! AGTGTTTTTCAATATTATTG+TGG + chr7.4:40383225-40383244 MS.gene055191:CDS 20.0%
!!! ATACTTTTCTTCGTTTAAAT+CGG - chr7.4:40383166-40383185 None:intergenic 20.0%
!!! CAATATTAATTTTGAGATTG+CGG - chr7.4:40382406-40382425 None:intergenic 20.0%
!!! TATCAAAGTGTTGAAAATAT+GGG + chr7.4:40382344-40382363 MS.gene055191:CDS 20.0%
! AAACTTTAGCAAAATGCAAT+TGG + chr7.4:40383302-40383321 MS.gene055191:CDS 25.0%
! AAAGACTAAAAAGTGAATTG+AGG - chr7.4:40382807-40382826 None:intergenic 25.0%
! AAATAATATTCTGCAGGTAT+TGG + chr7.4:40382837-40382856 MS.gene055191:intron 25.0%
! AACAAAATCTTTATCTGCTT+CGG - chr7.4:40382219-40382238 None:intergenic 25.0%
! AAGTTTGATCAAAGAAATGA+CGG + chr7.4:40382703-40382722 MS.gene055191:CDS 25.0%
! ATAAAAGAAGTCTTCATACT+TGG - chr7.4:40382462-40382481 None:intergenic 25.0%
! ATAGTATATTGTATGCTCAA+GGG + chr7.4:40383022-40383041 MS.gene055191:CDS 25.0%
! CTTGTTAACACAAATTAAGA+AGG + chr7.4:40383847-40383866 MS.gene055191:CDS 25.0%
! GATTAGAAATAATATTCTGC+AGG + chr7.4:40382831-40382850 MS.gene055191:intron 25.0%
!! GAACATATAAAGTACTTTGT+GGG - chr7.4:40382440-40382459 None:intergenic 25.0%
!! TAATTTGTGTTAACAAGTGA+CGG - chr7.4:40383844-40383863 None:intergenic 25.0%
!! TTTTTGACAAGAAATCAAAG+TGG + chr7.4:40383524-40383543 MS.gene055191:intron 25.0%
!!! ACGTTTTTTAACATTTCCAT+TGG + chr7.4:40383071-40383090 MS.gene055191:CDS 25.0%
!!! CGTTTTTTAACATTTCCATT+GGG + chr7.4:40383072-40383091 MS.gene055191:CDS 25.0%
!!! CTATCAAAGTGTTGAAAATA+TGG + chr7.4:40382343-40382362 MS.gene055191:CDS 25.0%
AAAAACTGATGAAGATTGCA+GGG + chr7.4:40383272-40383291 MS.gene055191:CDS 30.0%
AAAAATTGTTGTCCATTCTG+TGG + chr7.4:40382512-40382531 MS.gene055191:CDS 30.0%
AAAATTGTTGTCCATTCTGT+GGG + chr7.4:40382513-40382532 MS.gene055191:CDS 30.0%
AAATTGTCTGGAAAACTGAA+AGG - chr7.4:40382562-40382581 None:intergenic 30.0%
AATATCGAACCAGTTACAAT+TGG + chr7.4:40382305-40382324 MS.gene055191:CDS 30.0%
AATTGTCTGGAAAACTGAAA+GGG - chr7.4:40382561-40382580 None:intergenic 30.0%
AGCTTCTTAACATTACCATT+AGG + chr7.4:40382251-40382270 MS.gene055191:CDS 30.0%
ATCCTAAGCAAAAAATTGTC+TGG - chr7.4:40382574-40382593 None:intergenic 30.0%
CAAAACTTCTCTTAATGATC+TGG + chr7.4:40383461-40383480 MS.gene055191:CDS 30.0%
GAGGAATACAACTTAAAAAG+TGG - chr7.4:40382788-40382807 None:intergenic 30.0%
GATAGTATATTGTATGCTCA+AGG + chr7.4:40383021-40383040 MS.gene055191:CDS 30.0%
TAAAAACTGATGAAGATTGC+AGG + chr7.4:40383271-40383290 MS.gene055191:CDS 30.0%
TAGTATATTGTATGCTCAAG+GGG + chr7.4:40383023-40383042 MS.gene055191:CDS 30.0%
TTTCATGCCTAAAAACACAT+CGG - chr7.4:40382902-40382921 None:intergenic 30.0%
TTTCTGAATAAGTCTTGCAA+TGG - chr7.4:40382279-40382298 None:intergenic 30.0%
! GCTTTTTATTCCAAAGTTGT+TGG - chr7.4:40382681-40382700 None:intergenic 30.0%
! GGAACATATAAAGTACTTTG+TGG - chr7.4:40382441-40382460 None:intergenic 30.0%
! TTATCACCTTCACTATTTTG+CGG + chr7.4:40383578-40383597 MS.gene055191:intron 30.0%
! TTTTTAACATTTCCATTGGG+TGG + chr7.4:40383075-40383094 MS.gene055191:CDS 30.0%
!! AGTTTTTAGAAGTGTGAGAT+CGG - chr7.4:40383259-40383278 None:intergenic 30.0%
!! TTTTCTGATAACTAGCTTCA+CGG - chr7.4:40382995-40383014 None:intergenic 30.0%
!!! TTCCAGACAATTTTTTGCTT+AGG + chr7.4:40382569-40382588 MS.gene055191:CDS 30.0%
AAAGACACTACTTGCTCTTT+AGG - chr7.4:40382155-40382174 None:intergenic 35.0%
AACTTCTCTTAATGATCTGG+AGG + chr7.4:40383464-40383483 MS.gene055191:CDS 35.0%
AAGTCTGTTCTTTGCTTCTT+TGG - chr7.4:40383196-40383215 None:intergenic 35.0%
AATTACCTCTTTGATGCCAA+TGG - chr7.4:40383502-40383521 None:intergenic 35.0%
ACCAGAAATGTATGTGGTTA+CGG + chr7.4:40383377-40383396 MS.gene055191:CDS 35.0%
AGTATATTGTATGCTCAAGG+GGG + chr7.4:40383024-40383043 MS.gene055191:CDS 35.0%
TTGAGACAACCAATTGTAAC+TGG - chr7.4:40382317-40382336 None:intergenic 35.0%
TTTGATCTGACCAACAACTT+TGG + chr7.4:40382668-40382687 MS.gene055191:CDS 35.0%
! AGTTCTTTCGTCAGTATTGA+TGG + chr7.4:40383123-40383142 MS.gene055191:CDS 35.0%
! CAATGCTCTTATTTGAGCAT+AGG + chr7.4:40382482-40382501 MS.gene055191:CDS 35.0%
! GAGTTTTACGCAACTTAGAA+GGG + chr7.4:40383097-40383116 MS.gene055191:CDS 35.0%
!! AGTAGTGTCTTTGAAACTTC+TGG + chr7.4:40382163-40382182 MS.gene055191:CDS 35.0%
AATGACGGTCAATGTCACAA+AGG + chr7.4:40382718-40382737 MS.gene055191:CDS 40.0%
ACACAACCGCAAAATAGTGA+AGG - chr7.4:40383587-40383606 None:intergenic 40.0%
AGTCTTGCAATGGTTCCTAA+TGG - chr7.4:40382269-40382288 None:intergenic 40.0%
ATCAAAGATCGTGTGATCCA+TGG - chr7.4:40382654-40382673 None:intergenic 40.0%
CAAGAGACCAGAAATGTATG+TGG + chr7.4:40383371-40383390 MS.gene055191:CDS 40.0%
GAGGAAAAAGTTGTCACCAT+TGG + chr7.4:40383483-40383502 MS.gene055191:CDS 40.0%
GATGAAACTGGAGACAACAA+CGG - chr7.4:40383420-40383439 None:intergenic 40.0%
GATGAAGATTGCAGGGATAT+GGG + chr7.4:40383279-40383298 MS.gene055191:CDS 40.0%
GGTCAATGTCACAAAGGAAA+AGG + chr7.4:40382724-40382743 MS.gene055191:CDS 40.0%
GTATATTGTATGCTCAAGGG+GGG + chr7.4:40383025-40383044 MS.gene055191:CDS 40.0%
TCAACGTCTGCTCTAACAAA+TGG + chr7.4:40383815-40383834 MS.gene055191:CDS 40.0%
TCCGTAACCACATACATTTC+TGG - chr7.4:40383381-40383400 None:intergenic 40.0%
TGATGAAGATTGCAGGGATA+TGG + chr7.4:40383278-40383297 MS.gene055191:CDS 40.0%
! CCTAAAAACACATCGGTTAG+AGG - chr7.4:40382895-40382914 None:intergenic 40.0%
! CCTCTAACCGATGTGTTTTT+AGG + chr7.4:40382892-40382911 MS.gene055191:CDS 40.0%
! GGAGTTTTACGCAACTTAGA+AGG + chr7.4:40383096-40383115 MS.gene055191:CDS 40.0%
! TGCTCTTATTTGAGCATAGG+TGG + chr7.4:40382485-40382504 MS.gene055191:CDS 40.0%
AACCTCGTATCGAGAGATCA+AGG + chr7.4:40382920-40382939 MS.gene055191:CDS 45.0%
ATCCTTGATCTCTCGATACG+AGG - chr7.4:40382925-40382944 None:intergenic 45.0%
ATCGTGTGATCCATGGAATG+CGG - chr7.4:40382647-40382666 None:intergenic 45.0%
GCAGAGTCACAGCATATTCA+AGG + chr7.4:40383781-40383800 MS.gene055191:intron 45.0%
TGTCACCATTGGCATCAAAG+AGG + chr7.4:40383494-40383513 MS.gene055191:CDS 45.0%
TTGCGTAAAACTCCACCCAA+TGG - chr7.4:40383090-40383109 None:intergenic 45.0%
! GACAATGGATTCCCACAGAA+TGG - chr7.4:40382527-40382546 None:intergenic 45.0%
AACTGTCTTGCCGCATTCCA+TGG + chr7.4:40382634-40382653 MS.gene055191:CDS 50.0%
AGGGAAACTGAACGCGACAA+TGG - chr7.4:40382542-40382561 None:intergenic 50.0%
GGTCTCTTGACACAACTTCC+AGG - chr7.4:40383360-40383379 None:intergenic 50.0%
!! CACATCGGTTAGAGGTGTCT+TGG - chr7.4:40382887-40382906 None:intergenic 50.0%
CTTCCAGGACTTCCTGCATG+CGG - chr7.4:40383345-40383364 None:intergenic 55.0%
ACACCGCATGCAGGAAGTCC+TGG + chr7.4:40383339-40383358 MS.gene055191:CDS 60.0%
ACCATTGCCACACCGCATGC+AGG + chr7.4:40383330-40383349 MS.gene055191:CDS 60.0%
AGGACTTCCTGCATGCGGTG+TGG - chr7.4:40383340-40383359 None:intergenic 60.0%
TCCTGCATGCGGTGTGGCAA+TGG - chr7.4:40383334-40383353 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 40382071 40383877 40382071 ID=MS.gene055191
chr7.4 mRNA 40382071 40383877 40382071 ID=MS.gene055191.t1;Parent=MS.gene055191
chr7.4 exon 40382071 40382745 40382071 ID=MS.gene055191.t1.exon1;Parent=MS.gene055191.t1
chr7.4 CDS 40382071 40382745 40382071 ID=cds.MS.gene055191.t1;Parent=MS.gene055191.t1
chr7.4 exon 40382853 40383515 40382853 ID=MS.gene055191.t1.exon2;Parent=MS.gene055191.t1
chr7.4 CDS 40382853 40383515 40382853 ID=cds.MS.gene055191.t1;Parent=MS.gene055191.t1
chr7.4 exon 40383785 40383877 40383785 ID=MS.gene055191.t1.exon3;Parent=MS.gene055191.t1
chr7.4 CDS 40383785 40383877 40383785 ID=cds.MS.gene055191.t1;Parent=MS.gene055191.t1
Gene Sequence

>MS.gene055191

ATGCTTCTTTCTTTTCTTTCACGTTTGATTTCTCGTTTGATAGCTGTTATCATGAGATTCATGATTGTTCTTCGATTATATCCTAAAGAGCAAGTAGTGTCTTTGAAACTTCTGGTAAACACAGACACTAACAAAGTTTTATTTGCCGAAGCAGATAAAGATTTTGTTGACATTCTCTGTAGCTTCTTAACATTACCATTAGGAACCATTGCAAGACTTATTCAGAAAAAGTCGAATATCGAACCAGTTACAATTGGTTGTCTCAACTCTCTCTATCAAAGTGTTGAAAATATGGGTTTGTTCACAGATTATAACTCATCTGAAGATTATTGCCGCAATCTCAAAATTAATATTGATGACTCTCAGCCCACAAAGTACTTTATATGTTCCAAGTATGAAGACTTCTTTTATCAATGCTCTTATTTGAGCATAGGTGGAAAGAAAAATTGTTGTCCATTCTGTGGGAATCCATTGTCGCGTTCAGTTTCCCTTTCAGTTTTCCAGACAATTTTTTGCTTAGGATTTGTGAAGTTTAATACAAGTTTTGTCATTAGCGATGATTTAACTGTCTTGCCGCATTCCATGGATCACACGATCTTTGATCTGACCAACAACTTTGGAATAAAAAGCACAAGTTTGATCAAAGAAATGACGGTCAATGTCACAAAGGAAAAGGTTCGCTATTCTTTGTTTCTTAGTAATTGCTCTAGTTTGCCACTTTTTAAGTTGTATTCCTCAATTCACTTTTTAGTCTTTGATTGATTAGAAATAATATTCTGCAGGTATTGGATCTGTTAAAGTGTTCATTGTTTTCCAAGACACCTCTAACCGATGTGTTTTTAGGCATGAAACCTCGTATCGAGAGATCAAGGATTTTCGCTGATGATGTTAAAACCATTTTTAGTGATGATATTCATATCACCGTGAAGCTAGTTATCAGAAAATCTGATGATAGTATATTGTATGCTCAAGGGGGGCATGATTTTGCAGAGTTAATCATACGTTTTTTAACATTTCCATTGGGTGGAGTTTTACGCAACTTAGAAGGGAATAGTTCTTTCGTCAGTATTGATGGATTGTGCAAGAGCATAGCCGATTTAAACGAAGAAAAGTATTTCATATCCAAAGAAGCAAAGAACAGACTTCTCAAGCTAAGTGTTTTTCAATATTATTGTGGAAATTCAACCGATCTCACACTTCTAAAAACTGATGAAGATTGCAGGGATATGGGAAACTTTAGCAAAATGCAATTGGCTGATACCATTGCCACACCGCATGCAGGAAGTCCTGGAAGTTGTGTCAAGAGACCAGAAATGTATGTGGTTACGGATGATCTGATCGTAGAACCGTTGTTGTCTCCAGTTTCATCTATATATATACTTCAACGTTTCAAAACTTCTCTTAATGATCTGGAGGAAAAAGTTGTCACCATTGGCATCAAAGAGGTAATTATTTTTTGACAAGAAATCAAAGTGGTAATTATTTAAGGAGTGAAAACAATACAGATTTATCACCTTCACTATTTTGCGGTTGTGTTGAAGTTTTCATACTAGACTGATTTACTATGAAACTTATTGAAGATATAGTTAGTAGTCATTTACTCGTTAGAAATTAGTAGTTTGCTATTCGTTTCTAACTAATGAATGACTACTAACTATATCATCAAGATTAATTATGTAGCAATAGCTCATCTCACATTGTTGTGTTCGTGCAGAGTCACAGCATATTCAAGGCAGCTTTAAGCTCAACGTCTGCTCTAACAAATGGTCTCCGTCACTTGTTAACACAAATTAAGAAGGAGAAATGA
Protein sequence

>MS.gene055191.t1

MLLSFLSRLISRLIAVIMRFMIVLRLYPKEQVVSLKLLVNTDTNKVLFAEADKDFVDILCSFLTLPLGTIARLIQKKSNIEPVTIGCLNSLYQSVENMGLFTDYNSSEDYCRNLKINIDDSQPTKYFICSKYEDFFYQCSYLSIGGKKNCCPFCGNPLSRSVSLSVFQTIFCLGFVKFNTSFVISDDLTVLPHSMDHTIFDLTNNFGIKSTSLIKEMTVNVTKEKVLDLLKCSLFSKTPLTDVFLGMKPRIERSRIFADDVKTIFSDDIHITVKLVIRKSDDSILYAQGGHDFAELIIRFLTFPLGGVLRNLEGNSSFVSIDGLCKSIADLNEEKYFISKEAKNRLLKLSVFQYYCGNSTDLTLLKTDEDCRDMGNFSKMQLADTIATPHAGSPGSCVKRPEMYVVTDDLIVEPLLSPVSSIYILQRFKTSLNDLEEKVVTIGIKESHSIFKAALSSTSALTNGLRHLLTQIKKEK