AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45995

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45995.t1 MTR_7g066260 57.576 495 132 9 2 423 3 492 0.0 516
MS.gene45995.t1 MTR_7g066360 53.374 489 150 8 1 422 1 478 4.09e-154 445
MS.gene45995.t1 MTR_7g066290 51.965 458 143 4 2 409 3 433 5.55e-147 425
MS.gene45995.t1 MTR_7g066340 49.482 483 173 8 4 423 2 476 1.88e-142 415
MS.gene45995.t1 MTR_7g066570 50.823 486 156 11 1 409 1 480 1.49e-137 405
MS.gene45995.t1 MTR_7g012680 51.209 455 166 10 1 409 1 445 1.78e-132 389
MS.gene45995.t1 MTR_7g066350 50.444 450 160 9 10 405 5 445 2.19e-130 384
MS.gene45995.t1 MTR_7g066310 51.395 430 165 7 11 423 4 406 3.79e-130 381
MS.gene45995.t1 MTR_1g041315 47.033 455 175 6 1 393 1 451 2.57e-123 367
MS.gene45995.t1 MTR_7g066580 47.768 448 169 13 20 409 1 441 9.99e-116 346
MS.gene45995.t1 MTR_7g066400 45.806 465 156 12 4 405 2 433 3.33e-115 344
MS.gene45995.t1 MTR_7g058710 45.473 497 167 12 1 411 1 479 1.07e-114 344
MS.gene45995.t1 MTR_1g014060 49.752 404 154 11 25 409 11 384 5.18e-111 332
MS.gene45995.t1 MTR_2g029400 42.396 434 186 9 1 399 1 405 8.35e-95 291
MS.gene45995.t1 MTR_7g066430 38.323 501 215 11 12 422 2 498 7.30e-92 286
MS.gene45995.t1 MTR_7g058700 46.262 428 145 12 28 409 533 921 4.75e-89 289
MS.gene45995.t1 MTR_7g066280 42.344 418 149 10 93 423 1 413 1.19e-83 262
MS.gene45995.t1 MTR_7g062300 38.105 475 218 11 4 407 2 471 2.53e-80 255
MS.gene45995.t1 MTR_7g062280 36.454 502 220 12 8 423 4 492 1.36e-79 254
MS.gene45995.t1 MTR_7g066490 38.940 434 185 8 14 409 16 407 2.92e-79 251
MS.gene45995.t1 MTR_7g063660 36.402 478 221 10 9 411 4 473 1.59e-78 251
MS.gene45995.t1 MTR_7g063880 37.945 477 213 16 1 409 1 462 2.21e-75 243
MS.gene45995.t1 MTR_7g063830 36.188 467 209 11 8 413 4 442 3.52e-73 236
MS.gene45995.t1 MTR_7g063920 36.458 480 205 9 1 423 1 437 5.58e-73 235
MS.gene45995.t1 MTR_7g063820 37.349 498 215 15 8 423 3 485 1.02e-71 233
MS.gene45995.t1 MTR_7g063900 37.681 483 208 12 14 411 10 484 8.75e-71 231
MS.gene45995.t1 MTR_4g019310 34.257 505 233 16 8 422 2 497 1.63e-70 231
MS.gene45995.t1 MTR_7g063840 35.758 495 217 15 6 423 4 474 3.16e-69 227
MS.gene45995.t1 MTR_3g007740 37.797 463 194 16 13 409 8 442 6.27e-67 220
MS.gene45995.t1 MTR_7g063670 35.886 457 210 12 15 409 16 451 4.06e-66 218
MS.gene45995.t1 MTR_3g065200 35.402 435 200 13 14 396 3 408 4.29e-62 207
MS.gene45995.t1 MTR_7g063890 35.451 488 213 14 13 411 26 500 3.60e-58 198
MS.gene45995.t1 MTR_4g017440 31.407 519 235 16 1 412 1 505 2.53e-55 191
MS.gene45995.t1 MTR_4g017830 29.862 509 243 15 4 408 2 500 3.56e-55 191
MS.gene45995.t1 MTR_7g066680 42.955 291 104 6 175 405 46 334 6.22e-55 186
MS.gene45995.t1 MTR_4g019340 31.933 476 218 14 15 397 39 501 2.55e-54 188
MS.gene45995.t1 MTR_4g019340 32.787 122 62 3 14 122 303 417 7.86e-11 64.3
MS.gene45995.t1 MTR_4g017410 31.349 504 251 17 8 422 3 500 8.43e-54 187
MS.gene45995.t1 MTR_4g017610 30.426 493 234 17 3 405 2 475 1.02e-50 178
MS.gene45995.t1 MTR_7g066390 57.237 152 35 1 258 409 1 122 3.15e-46 157
MS.gene45995.t1 MTR_7g066410 50.286 175 75 5 15 178 11 184 7.78e-46 166
MS.gene45995.t1 MTR_7g066410 37.662 231 108 3 215 409 282 512 3.20e-37 142
MS.gene45995.t1 MTR_4g017470 26.969 508 236 11 4 412 2 473 9.57e-41 151
MS.gene45995.t1 MTR_7g063720 41.294 201 107 3 220 409 26 226 9.13e-40 142
MS.gene45995.t1 MTR_7g063720 26.404 178 105 5 9 180 18 175 3.52e-11 63.5
MS.gene45995.t1 MTR_4g017550 29.399 466 218 18 41 407 18 471 3.59e-39 147
MS.gene45995.t1 MTR_4g017550 31.183 186 94 6 14 177 247 420 9.23e-12 67.0
MS.gene45995.t1 MTR_7g066480 47.929 169 85 2 12 179 14 180 5.57e-39 145
MS.gene45995.t1 MTR_7g066480 44.737 190 71 3 220 409 266 421 8.39e-38 142
MS.gene45995.t1 MTR_7g062270 42.703 185 87 6 5 178 2 178 1.95e-31 124
MS.gene45995.t1 MTR_2g067310 45.161 155 50 4 25 179 58 177 2.02e-29 115
MS.gene45995.t1 MTR_7g100420 35.268 224 114 6 222 416 182 403 1.49e-22 99.4
MS.gene45995.t1 MTR_7g100420 59.322 59 20 1 15 69 40 98 3.74e-12 68.2
MS.gene45995.t1 MTR_7g063850 31.050 219 117 4 220 409 69 282 2.17e-22 97.1
MS.gene45995.t1 MTR_8g023240 25.482 467 245 15 15 401 38 481 2.15e-19 90.9
MS.gene45995.t1 MTR_1g115440 28.099 242 149 6 5 226 2 238 5.02e-18 83.2
MS.gene45995.t1 MTR_8g445860 27.083 240 149 9 6 226 5 237 1.87e-17 81.6
MS.gene45995.t1 MTR_8g445860 27.273 231 132 7 206 402 3 231 2.14e-17 81.6
MS.gene45995.t1 MTR_4g019330 32.653 196 89 6 231 422 32 188 9.33e-17 78.6
MS.gene45995.t1 MTR_4g019240 39.823 113 58 4 10 114 9 119 1.77e-16 77.4
MS.gene45995.t1 MTR_0150s0010 26.141 241 149 6 8 226 4 237 1.48e-15 76.3
MS.gene45995.t1 MTR_1g115450 32.558 129 74 3 9 132 2 122 4.47e-14 69.7
MS.gene45995.t1 MTR_7g063760 52.381 63 29 1 346 407 3 65 1.13e-13 66.2
MS.gene45995.t1 MTR_0150s0030 38.750 80 44 1 8 87 2 76 3.74e-13 68.6
MS.gene45995.t1 MTR_1g115455 39.560 91 50 1 8 98 3 88 5.50e-13 68.6
MS.gene45995.t1 MTR_7g063690 25.862 290 101 7 1 244 1 222 5.62e-13 68.9
MS.gene45995.t1 MTR_8g445920 38.824 85 47 1 8 92 4 83 5.74e-13 65.5
MS.gene45995.t1 MTR_8g044890 38.824 85 47 1 8 92 4 83 5.74e-13 65.5
MS.gene45995.t1 MTR_8g445910 40.000 80 43 1 8 87 2 76 3.14e-12 67.0
MS.gene45995.t1 MTR_8g044880 40.000 80 43 1 8 87 2 76 3.98e-12 67.0
MS.gene45995.t1 MTR_7g063870 56.364 55 24 0 8 62 25 79 6.26e-12 65.9
MS.gene45995.t1 MTR_1g115470 37.113 97 54 2 14 108 6 97 2.06e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45995.t1 AT5G01150 29.058 499 256 13 7 422 3 486 1.28e-44 162
MS.gene45995.t1 AT5G01130 28.875 471 258 15 7 422 3 451 3.12e-42 155
MS.gene45995.t1 AT5G01120 27.255 499 271 11 15 422 10 507 9.59e-41 152
MS.gene45995.t1 AT3G09140 28.340 494 257 14 9 409 4 493 2.38e-39 148
MS.gene45995.t1 AT5G43240 28.431 510 255 15 15 422 10 511 1.92e-36 140
MS.gene45995.t1 AT5G43240 28.431 510 255 15 15 422 10 511 1.92e-36 140
MS.gene45995.t1 AT5G43240 28.431 510 255 15 15 422 10 511 1.92e-36 140
MS.gene45995.t1 AT5G01140 26.899 487 254 12 7 422 3 458 2.18e-33 130
MS.gene45995.t1 AT3G09110 29.560 318 171 6 14 282 9 322 2.09e-32 125
MS.gene45995.t1 AT3G09120 31.935 310 157 10 11 268 3 310 2.86e-28 114
MS.gene45995.t1 AT3G09140 35.789 190 99 4 9 175 4 193 1.05e-24 106
MS.gene45995.t1 AT5G37320 39.516 124 67 4 25 140 20 143 1.46e-18 88.2

Find 70 sgRNAs with CRISPR-Local

Find 134 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTGAAGCAGTGAAATT+TGG 0.215494 7.2:-44120348 MS.gene45995:CDS
AAGAGTGCCATTAACAATTA+TGG 0.233920 7.2:-44119295 MS.gene45995:CDS
GATCCTAAATCCTCTCTTTC+GGG 0.240762 7.2:-44119327 MS.gene45995:CDS
GAGGAAATTGTCGTTGATAT+TGG 0.290428 7.2:-44119186 MS.gene45995:CDS
AAATCTTTGACCACAGATAT+TGG 0.298129 7.2:+44120283 None:intergenic
TGATCCTAAATCCTCTCTTT+CGG 0.322652 7.2:-44119328 MS.gene45995:CDS
GATTTGTTTCTTGATGAAAA+TGG 0.322690 7.2:-44120075 MS.gene45995:CDS
GTGTCTTTGTGGACGGTTTA+CGG 0.348361 7.2:-44120121 MS.gene45995:CDS
CAAAGTTAGCTTGAAAGTTA+TGG 0.360081 7.2:-44120490 MS.gene45995:CDS
CCTCCCGAAAGAGAGGATTT+AGG 0.363934 7.2:+44119324 None:intergenic
ATTTCCTCTATGTCATTTAG+AGG 0.364076 7.2:+44119201 None:intergenic
TCCGTAACCATAATTGTTAA+TGG 0.379272 7.2:+44119288 None:intergenic
AGTTTCTTAACATTGCCTTT+AGG 0.383949 7.2:-44120402 MS.gene45995:CDS
TCAACATCTGCTTTGACTAA+TGG 0.392693 7.2:-44119033 MS.gene45995:CDS
TCCACTCGAAACATTCTGTT+TGG 0.394895 7.2:-44119633 MS.gene45995:CDS
GCCATTAACAATTATGGTTA+CGG 0.409007 7.2:-44119289 MS.gene45995:CDS
TAACCTTCCATTGAGTTCCT+TGG 0.415613 7.2:+44120240 None:intergenic
GCTGCGTTTACTCACAAATC+AGG 0.417974 7.2:-44119372 MS.gene45995:CDS
GAAGAGGGTAAGATTGGTAT+TGG 0.419917 7.2:-44119714 MS.gene45995:CDS
ACTCACCTATGTACTGTTTG+AGG 0.434750 7.2:+44119010 None:intergenic
TGCAAATCAATCAAGTGAAC+AGG 0.437476 7.2:-44120517 MS.gene45995:CDS
CCATCTGAAGAGGGTAAGAT+TGG 0.438944 7.2:-44119720 MS.gene45995:CDS
AAGTTATGGTGGACAAAGTA+AGG 0.476932 7.2:-44120476 MS.gene45995:CDS
CAATATTCAGCTTGAGCTTG+TGG 0.489898 7.2:+44120214 None:intergenic
GGTAAGATTGGTATTGGAAA+GGG 0.492219 7.2:-44119708 MS.gene45995:CDS
TCTGACCGCAAGCATCTCTC+AGG 0.492520 7.2:+44119474 None:intergenic
AATATCAATGCAGCTTAAAG+AGG 0.495387 7.2:+44119524 None:intergenic
TGGAATCAGAAGTGTCTTTG+TGG 0.499620 7.2:-44120132 MS.gene45995:CDS
GGAGTGTTGCAAATGCTAGA+AGG 0.519900 7.2:-44119552 MS.gene45995:CDS
TGGTTCCTTACTCCCAATGT+AGG 0.523927 7.2:+44119414 None:intergenic
ATCAGAAGTGTCTTTGTGGA+CGG 0.527393 7.2:-44120128 MS.gene45995:CDS
TCATCAAGAAACAAATCTCT+CGG 0.528729 7.2:+44120081 None:intergenic
AAAGTTGTGTATGCTGAGGC+TGG 0.537208 7.2:-44120450 MS.gene45995:CDS
CGTTGATATTGGAGTGAAGG+AGG 0.544247 7.2:-44119175 MS.gene45995:intron
TGTCGTTGATATTGGAGTGA+AGG 0.545995 7.2:-44119178 MS.gene45995:CDS
AGTCTTGCAATAGTACCTAA+AGG 0.556108 7.2:+44120387 None:intergenic
GGCTTCTTCAGGTTGCACAT+AGG 0.558224 7.2:+44118138 None:intergenic
ACAGCAACCAAGGAACTCAA+TGG 0.558269 7.2:-44120247 MS.gene45995:CDS
GGGTAAGATTGGTATTGGAA+AGG 0.563253 7.2:-44119709 MS.gene45995:CDS
ATACATCTGTAGTATTTCCT+CGG 0.565957 7.2:+44120183 None:intergenic
TATTGCAAGACTCGTTGCTA+AGG 0.567646 7.2:-44120376 MS.gene45995:CDS
GGTCCCTCTAAATGACATAG+AGG 0.569467 7.2:-44119205 MS.gene45995:CDS
TTTCCTCTATGTCATTTAGA+GGG 0.570470 7.2:+44119202 None:intergenic
TGCAAATCCTCCCGAAAGAG+AGG 0.577572 7.2:+44119317 None:intergenic
GAAACCAACATATGCTGATG+AGG 0.578752 7.2:-44119748 MS.gene45995:CDS
AAGCCCTCATCAGCATATGT+TGG 0.587767 7.2:+44119744 None:intergenic
CAAGAAACAAATCTCTCGGA+CGG 0.592120 7.2:+44120085 None:intergenic
ACTACAGATGTATTCAATGT+GGG 0.593405 7.2:-44120173 MS.gene45995:CDS
CCAATCTTACCCTCTTCAGA+TGG 0.593770 7.2:+44119720 None:intergenic
AGTTAGCTTGAAAGTTATGG+TGG 0.596863 7.2:-44120487 MS.gene45995:CDS
ATCAGCTTATCCTCTTCAGA+TGG 0.598589 7.2:+44119681 None:intergenic
CCTAAATCCTCTCTTTCGGG+AGG 0.609428 7.2:-44119324 MS.gene45995:CDS
AATGGCCTCAAACAGTACAT+AGG 0.613552 7.2:-44119015 MS.gene45995:intron
AGGAAATGCTACAGCAACCA+AGG 0.618418 7.2:-44120257 MS.gene45995:CDS
ACACTATCAAATGATGACAC+TGG 0.620139 7.2:+44119249 None:intergenic
ACCAAACAGAATGTTTCGAG+TGG 0.623174 7.2:+44119632 None:intergenic
AAAGGGCTTACCATCTGAAG+AGG 0.626078 7.2:-44119691 MS.gene45995:CDS
TTCATATCTAGAGAGAATGA+AGG 0.632183 7.2:-44119226 MS.gene45995:CDS
TGAGGGCTTACCATCTGAAG+AGG 0.633509 7.2:-44119730 MS.gene45995:CDS
AAACCAACATATGCTGATGA+GGG 0.634689 7.2:-44119747 MS.gene45995:CDS
ATCTAGATCACCAATATCTG+TGG 0.636073 7.2:-44120293 MS.gene45995:CDS
TACTACAGATGTATTCAATG+TGG 0.641904 7.2:-44120174 MS.gene45995:CDS
CAACCAAGGAACTCAATGGA+AGG 0.644395 7.2:-44120243 MS.gene45995:CDS
ATTAGTCAAAGCAGATGTTG+AGG 0.644403 7.2:+44119035 None:intergenic
GAGGGCTTACCATCTGAAGA+GGG 0.663821 7.2:-44119729 MS.gene45995:CDS
GATCATTAGGGATCACACAA+AGG 0.686381 7.2:+44120013 None:intergenic
TCTGTGGTCAAAGATTTGCA+AGG 0.689564 7.2:-44120277 MS.gene45995:CDS
ATTTGCAACACTCCTCCCAG+AGG 0.732067 7.2:+44119561 None:intergenic
TGAATATTGATGACACACCG+AGG 0.765078 7.2:-44120200 MS.gene45995:CDS
TGAGTCCTGAGAGATGCTTG+CGG 0.770790 7.2:-44119479 MS.gene45995:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGATAAGAAATGTA+AGG + chr7.2:44120089-44120108 None:intergenic 15.0%
!! CTTTAATAATCATTTGTACA+TGG + chr7.2:44120193-44120212 None:intergenic 20.0%
!! TTATATATCTGTGTAATGAA+AGG - chr7.2:44120153-44120172 MS.gene45995:CDS 20.0%
!! TTTGCATTAATGTAAACAAA+TGG + chr7.2:44119937-44119956 None:intergenic 20.0%
!!! ATAATGTATAAAGTGTTATG+AGG + chr7.2:44119687-44119706 None:intergenic 20.0%
! AACTACATACTACTACTAAT+TGG + chr7.2:44119818-44119837 None:intergenic 25.0%
! AATATTGAAGCAGTGAAATT+TGG - chr7.2:44118302-44118321 MS.gene45995:intron 25.0%
! ATATCTGTGTTTATATGTGT+AGG - chr7.2:44118815-44118834 MS.gene45995:intron 25.0%
! ATTAGTAGTAGTATGTAGTT+TGG - chr7.2:44119818-44119837 MS.gene45995:intron 25.0%
! CGAGAAATATTAAAAGGAAA+AGG + chr7.2:44119533-44119552 None:intergenic 25.0%
! CTTCTGATTCCAAATAAAAA+TGG + chr7.2:44118510-44118529 None:intergenic 25.0%
! TACCATCTTCACATAAAAAT+TGG - chr7.2:44119887-44119906 MS.gene45995:intron 25.0%
! TATCTAATATCTATTGTGCA+GGG - chr7.2:44119566-44119585 MS.gene45995:CDS 25.0%
! TGCAATCGAGAAATATTAAA+AGG + chr7.2:44119539-44119558 None:intergenic 25.0%
! TTATCTAATATCTATTGTGC+AGG - chr7.2:44119565-44119584 MS.gene45995:CDS 25.0%
! TTTACATTAATGCAAATCGT+GGG - chr7.2:44119941-44119960 MS.gene45995:intron 25.0%
!! GATTTGTTTCTTGATGAAAA+TGG - chr7.2:44118575-44118594 MS.gene45995:intron 25.0%
!!! TGATCTTTTTTCCTTAATCA+TGG - chr7.2:44120315-44120334 MS.gene45995:CDS 25.0%
!!! TGATGAAAATGGTTTTGTTA+TGG - chr7.2:44118586-44118605 MS.gene45995:intron 25.0%
AAATCTTTGACCACAGATAT+TGG + chr7.2:44118370-44118389 None:intergenic 30.0%
AAGTAAGTGGTTAACTCATT+CGG + chr7.2:44119862-44119881 None:intergenic 30.0%
AATATCAATGCAGCTTAAAG+AGG + chr7.2:44119129-44119148 None:intergenic 30.0%
ACTACAGATGTATTCAATGT+GGG - chr7.2:44118477-44118496 MS.gene45995:intron 30.0%
AGCTAGTGTGAAATATATAG+AGG - chr7.2:44120211-44120230 MS.gene45995:CDS 30.0%
AGTTTCTTAACATTGCCTTT+AGG - chr7.2:44118248-44118267 MS.gene45995:intron 30.0%
ATACATCTGTAGTATTTCCT+CGG + chr7.2:44118470-44118489 None:intergenic 30.0%
GAATATAGAAGAAGAAGAGT+TGG - chr7.2:44120257-44120276 MS.gene45995:CDS 30.0%
GCCATTAACAATTATGGTTA+CGG - chr7.2:44119361-44119380 MS.gene45995:CDS 30.0%
GTTTACATTAATGCAAATCG+TGG - chr7.2:44119940-44119959 MS.gene45995:intron 30.0%
TAAAAATTGGCAAACCAGTA+AGG - chr7.2:44119900-44119919 MS.gene45995:intron 30.0%
TACTACAGATGTATTCAATG+TGG - chr7.2:44118476-44118495 MS.gene45995:intron 30.0%
TAGTTTGGTCTATTAGCTAA+GGG - chr7.2:44119833-44119852 MS.gene45995:intron 30.0%
TCATCAAGAAACAAATCTCT+CGG + chr7.2:44118572-44118591 None:intergenic 30.0%
TCCGTAACCATAATTGTTAA+TGG + chr7.2:44119365-44119384 None:intergenic 30.0%
TTCACACCATGATTAAATTG+AGG + chr7.2:44120416-44120435 None:intergenic 30.0%
TTCATATCTAGAGAGAATGA+AGG - chr7.2:44119424-44119443 MS.gene45995:CDS 30.0%
! ACAGGTATACTTGATGATTA+AGG + chr7.2:44120451-44120470 None:intergenic 30.0%
! AGCAAATGTAGACTTTTAAC+TGG + chr7.2:44118662-44118681 None:intergenic 30.0%
! ATTTCCTCTATGTCATTTAG+AGG + chr7.2:44119452-44119471 None:intergenic 30.0%
! CAAAGTTAGCTTGAAAGTTA+TGG - chr7.2:44118160-44118179 MS.gene45995:intron 30.0%
! TACTCACAAATCAGGTTTTA+AGG - chr7.2:44119286-44119305 MS.gene45995:CDS 30.0%
! TGCCAATTTTTATGTGAAGA+TGG + chr7.2:44119892-44119911 None:intergenic 30.0%
! TTTAAGATAAAGTCTGTCAG+AGG + chr7.2:44118879-44118898 None:intergenic 30.0%
! TTTCCTCTATGTCATTTAGA+GGG + chr7.2:44119451-44119470 None:intergenic 30.0%
!! AAGAGTGCCATTAACAATTA+TGG - chr7.2:44119355-44119374 MS.gene45995:CDS 30.0%
!! AGACTTTTAACTGGATCATT+AGG + chr7.2:44118653-44118672 None:intergenic 30.0%
!! GACTTTTAACTGGATCATTA+GGG + chr7.2:44118652-44118671 None:intergenic 30.0%
!! GGAGATTGACCATTTTTATT+TGG - chr7.2:44118498-44118517 MS.gene45995:intron 30.0%
!!! AAGTGTTATGAGGTTTTGTT+TGG + chr7.2:44119677-44119696 None:intergenic 30.0%
!!! CTGTTTTGATTGGTAATATC+TGG + chr7.2:44119259-44119278 None:intergenic 30.0%
AAACCAACATATGCTGATGA+GGG - chr7.2:44118903-44118922 MS.gene45995:intron 35.0%
AAGAAGAAGAGTTGGAAGAA+AGG - chr7.2:44120265-44120284 MS.gene45995:CDS 35.0%
ACACTATCAAATGATGACAC+TGG + chr7.2:44119404-44119423 None:intergenic 35.0%
AGATGGTAGTAGTAAGTAAG+TGG + chr7.2:44119875-44119894 None:intergenic 35.0%
AGTCTTGCAATAGTACCTAA+AGG + chr7.2:44118266-44118285 None:intergenic 35.0%
AGTTTGGTCTATTAGCTAAG+GGG - chr7.2:44119834-44119853 MS.gene45995:intron 35.0%
ATCTAGATCACCAATATCTG+TGG - chr7.2:44118357-44118376 MS.gene45995:intron 35.0%
ATTAGTCAAAGCAGATGTTG+AGG + chr7.2:44119618-44119637 None:intergenic 35.0%
CAATTCGTGCTTAAAAACAC+TGG - chr7.2:44119971-44119990 MS.gene45995:intron 35.0%
CATACTACTACTAATTGGAC+AGG + chr7.2:44119813-44119832 None:intergenic 35.0%
CTACATTTGCTTCAGATGAA+TGG - chr7.2:44118671-44118690 MS.gene45995:intron 35.0%
GAAAAAAGTTGTGTATGCTG+AGG - chr7.2:44118196-44118215 MS.gene45995:intron 35.0%
GAAACAAGTCACCATGATTA+AGG + chr7.2:44120329-44120348 None:intergenic 35.0%
GACAACAAATTAGACAGAAC+AGG + chr7.2:44120469-44120488 None:intergenic 35.0%
GAGAGAAAAACGCTACTTAT+CGG - chr7.2:44118716-44118735 MS.gene45995:intron 35.0%
GAGGAAATTGTCGTTGATAT+TGG - chr7.2:44119464-44119483 MS.gene45995:CDS 35.0%
GTAGTTTGGTCTATTAGCTA+AGG - chr7.2:44119832-44119851 MS.gene45995:intron 35.0%
GTGCAACCTCAATTTAATCA+TGG - chr7.2:44120407-44120426 MS.gene45995:CDS 35.0%
TCAACATCTGCTTTGACTAA+TGG - chr7.2:44119617-44119636 MS.gene45995:CDS 35.0%
TGATCCTAAATCCTCTCTTT+CGG - chr7.2:44119322-44119341 MS.gene45995:CDS 35.0%
TGCAAATCAATCAAGTGAAC+AGG - chr7.2:44118133-44118152 MS.gene45995:CDS 35.0%
TGGTTAATTCTGATCCTTAC+TGG + chr7.2:44119917-44119936 None:intergenic 35.0%
! AGTTAGCTTGAAAGTTATGG+TGG - chr7.2:44118163-44118182 MS.gene45995:intron 35.0%
! CCTCGAATTTTTCCTACATT+GGG - chr7.2:44119224-44119243 MS.gene45995:CDS 35.0%
! GGTAAGATTGGTATTGGAAA+GGG - chr7.2:44118942-44118961 MS.gene45995:intron 35.0%
! TATAGCTGACGAAGATTTTG+CGG - chr7.2:44119040-44119059 MS.gene45995:CDS 35.0%
! TTTTTCCTACATTGGGAGTA+AGG - chr7.2:44119231-44119250 MS.gene45995:CDS 35.0%
!! AAGTTATGGTGGACAAAGTA+AGG - chr7.2:44118174-44118193 MS.gene45995:intron 35.0%
!! AGTTTTCTCACTTTTCCTCT+GGG - chr7.2:44119074-44119093 MS.gene45995:intron 35.0%
!! GTTTTTAAGCACGAATTGAG+TGG + chr7.2:44119969-44119988 None:intergenic 35.0%
!!! TTTCTTCTTTTGGCTTCTTC+AGG + chr7.2:44120526-44120545 None:intergenic 35.0%
AATGGCCTCAAACAGTACAT+AGG - chr7.2:44119635-44119654 MS.gene45995:CDS 40.0%
ACCAAACAGAATGTTTCGAG+TGG + chr7.2:44119021-44119040 None:intergenic 40.0%
ACTCACCTATGTACTGTTTG+AGG + chr7.2:44119643-44119662 None:intergenic 40.0%
ATCAGCTTATCCTCTTCAGA+TGG + chr7.2:44118972-44118991 None:intergenic 40.0%
ATTGGAGTGAAGGAGGTAAA+GGG - chr7.2:44119482-44119501 MS.gene45995:CDS 40.0%
CAAGAAACAAATCTCTCGGA+CGG + chr7.2:44118568-44118587 None:intergenic 40.0%
CAATATTCAGCTTGAGCTTG+TGG + chr7.2:44118439-44118458 None:intergenic 40.0%
CACATAGGATCATCTGTCAA+AGG + chr7.2:44120500-44120519 None:intergenic 40.0%
CCCAATGTAGGAAAAATTCG+AGG + chr7.2:44119227-44119246 None:intergenic 40.0%
GAAACCAACATATGCTGATG+AGG - chr7.2:44118902-44118921 MS.gene45995:intron 40.0%
GAAGAGGGTAAGATTGGTAT+TGG - chr7.2:44118936-44118955 MS.gene45995:intron 40.0%
GATCATTAGGGATCACACAA+AGG + chr7.2:44118640-44118659 None:intergenic 40.0%
GATCCTAAATCCTCTCTTTC+GGG - chr7.2:44119323-44119342 MS.gene45995:CDS 40.0%
TAACCTTCCATTGAGTTCCT+TGG + chr7.2:44118413-44118432 None:intergenic 40.0%
TATTGCAAGACTCGTTGCTA+AGG - chr7.2:44118274-44118293 MS.gene45995:intron 40.0%
TATTGGAGTGAAGGAGGTAA+AGG - chr7.2:44119481-44119500 MS.gene45995:CDS 40.0%
TCCACTCGAAACATTCTGTT+TGG - chr7.2:44119017-44119036 MS.gene45995:CDS 40.0%
TCTGTGGTCAAAGATTTGCA+AGG - chr7.2:44118373-44118392 MS.gene45995:intron 40.0%
TGTCGTTGATATTGGAGTGA+AGG - chr7.2:44119472-44119491 MS.gene45995:CDS 40.0%
! GCCTCGAATTTTTCCTACAT+TGG - chr7.2:44119223-44119242 MS.gene45995:CDS 40.0%
! GGGTAAGATTGGTATTGGAA+AGG - chr7.2:44118941-44118960 MS.gene45995:intron 40.0%
! TGAATATTGATGACACACCG+AGG - chr7.2:44118450-44118469 MS.gene45995:intron 40.0%
!! ATCAGAAGTGTCTTTGTGGA+CGG - chr7.2:44118522-44118541 MS.gene45995:intron 40.0%
!! CAGTTTTCTCACTTTTCCTC+TGG - chr7.2:44119073-44119092 MS.gene45995:intron 40.0%
!! TGGAATCAGAAGTGTCTTTG+TGG - chr7.2:44118518-44118537 MS.gene45995:intron 40.0%
!!! GTAAACGCAGCTGTTTTGAT+TGG + chr7.2:44119269-44119288 None:intergenic 40.0%
AAAGGGCTTACCATCTGAAG+AGG - chr7.2:44118959-44118978 MS.gene45995:intron 45.0%
AAAGTTGTGTATGCTGAGGC+TGG - chr7.2:44118200-44118219 MS.gene45995:intron 45.0%
AACGCTACTTATCGGCAAGA+AGG - chr7.2:44118724-44118743 MS.gene45995:intron 45.0%
AAGCCCTCATCAGCATATGT+TGG + chr7.2:44118909-44118928 None:intergenic 45.0%
ACAGCAACCAAGGAACTCAA+TGG - chr7.2:44118403-44118422 MS.gene45995:intron 45.0%
AGGAAATGCTACAGCAACCA+AGG - chr7.2:44118393-44118412 MS.gene45995:intron 45.0%
CAACCAAGGAACTCAATGGA+AGG - chr7.2:44118407-44118426 MS.gene45995:intron 45.0%
CCAATCTTACCCTCTTCAGA+TGG + chr7.2:44118933-44118952 None:intergenic 45.0%
CCATCTGAAGAGGGTAAGAT+TGG - chr7.2:44118930-44118949 MS.gene45995:intron 45.0%
CGTTGATATTGGAGTGAAGG+AGG - chr7.2:44119475-44119494 MS.gene45995:CDS 45.0%
GCTGCGTTTACTCACAAATC+AGG - chr7.2:44119278-44119297 MS.gene45995:CDS 45.0%
GGTCCCTCTAAATGACATAG+AGG - chr7.2:44119445-44119464 MS.gene45995:CDS 45.0%
GTGTCTTTGTGGACGGTTTA+CGG - chr7.2:44118529-44118548 MS.gene45995:intron 45.0%
TGGTTCCTTACTCCCAATGT+AGG + chr7.2:44119239-44119258 None:intergenic 45.0%
!! GGAGTGTTGCAAATGCTAGA+AGG - chr7.2:44119098-44119117 MS.gene45995:intron 45.0%
!! TTTCTCACTTTTCCTCTGGG+AGG - chr7.2:44119077-44119096 MS.gene45995:intron 45.0%
ATTTGCAACACTCCTCCCAG+AGG + chr7.2:44119092-44119111 None:intergenic 50.0%
CCTAAATCCTCTCTTTCGGG+AGG - chr7.2:44119326-44119345 MS.gene45995:CDS 50.0%
CCTCCCGAAAGAGAGGATTT+AGG + chr7.2:44119329-44119348 None:intergenic 50.0%
GAGGGCTTACCATCTGAAGA+GGG - chr7.2:44118921-44118940 MS.gene45995:intron 50.0%
GCTACTTATCGGCAAGAAGG+AGG - chr7.2:44118727-44118746 MS.gene45995:intron 50.0%
TGAGGGCTTACCATCTGAAG+AGG - chr7.2:44118920-44118939 MS.gene45995:intron 50.0%
TGAGTCCTGAGAGATGCTTG+CGG - chr7.2:44119171-44119190 MS.gene45995:intron 50.0%
TGCAAATCCTCCCGAAAGAG+AGG + chr7.2:44119336-44119355 None:intergenic 50.0%
!! GGCTTCTTCAGGTTGCACAT+AGG + chr7.2:44120515-44120534 None:intergenic 50.0%
TCTGACCGCAAGCATCTCTC+AGG + chr7.2:44119179-44119198 None:intergenic 55.0%
!!! CAGAGGCGTTTTCGAGAGCA+AGG + chr7.2:44118862-44118881 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 44118122 44120550 44118122 ID=MS.gene45995
chr7.2 mRNA 44118122 44120550 44118122 ID=MS.gene45995.t1;Parent=MS.gene45995
chr7.2 exon 44120004 44120550 44120004 ID=MS.gene45995.t1.exon1;Parent=MS.gene45995.t1
chr7.2 CDS 44120004 44120550 44120004 ID=cds.MS.gene45995.t1;Parent=MS.gene45995.t1
chr7.2 exon 44119176 44119786 44119176 ID=MS.gene45995.t1.exon2;Parent=MS.gene45995.t1
chr7.2 CDS 44119176 44119786 44119176 ID=cds.MS.gene45995.t1;Parent=MS.gene45995.t1
chr7.2 exon 44119016 44119085 44119016 ID=MS.gene45995.t1.exon3;Parent=MS.gene45995.t1
chr7.2 CDS 44119016 44119085 44119016 ID=cds.MS.gene45995.t1;Parent=MS.gene45995.t1
chr7.2 exon 44118122 44118165 44118122 ID=MS.gene45995.t1.exon4;Parent=MS.gene45995.t1
chr7.2 CDS 44118122 44118165 44118122 ID=cds.MS.gene45995.t1;Parent=MS.gene45995.t1
Gene Sequence

>MS.gene45995

ATGGCTAGCAGTGCAAATCAATCAAGTGAACAGGCTGACAAAGTTAGCTTGAAAGTTATGGTGGACAAAGTAAGGAAAAAAGTTGTGTATGCTGAGGCTGGAAAAGATTTTGTTGATGTTCTTTTCAGTTTCTTAACATTGCCTTTAGGTACTATTGCAAGACTCGTTGCTAAGGACTCAAATATTGAAGCAGTGAAATTTGGCAGCATTAGCTCACTGTATCAAAGTGTGACAGATCTAGATCACCAATATCTGTGGTCAAAGATTTGCAAGGAAATGCTACAGCAACCAAGGAACTCAATGGAAGGTTACTGCCACAAGCTCAAGCTGAATATTGATGACACACCGAGGAAATACTACAGATGTATTCAATGTGGGAGATTGACCATTTTTATTTGGAATCAGAAGTGTCTTTGTGGACGGTTTACGGAAACAGAAGATATCCGTCCGAGAGATTTGTTTCTTGATGAAAATGGTTTTGTTATGGAAACTGCTTCTTTTATAATTCATGACAACCTTTGTGTGATCCCTAATGATCCAGTTAAAAGTCTACATTTGCTTCAGATGAATGGAATCAATGACATAGCAGATATCGAGAGAAAAACGCTACTTATCGGCAAGAAGGAGGCATGATTTTTTGAATTTTCTAGATATTTATATCGTTATCATTTCTGTTGATTTTATTTTAAATGAATATCTGTGTTTATATGTGTAGGTTGTTGATCTTCTCAAGTTGTCCTTGCTCTCGAAAACGCCTCTGACAGACTTTATCTTAAAGAAGAAACCAACATATGCTGATGAGGGCTTACCATCTGAAGAGGGTAAGATTGGTATTGGAAAGGGCTTACCATCTGAAGAGGATAAGCTGATGCTGATGAAACTACTAGTTAGAAAATCCACTCGAAACATTCTGTTTGGTATAGCTGACGAAGATTTTGCGGACTTACTTTTCAGTTTTCTCACTTTTCCTCTGGGAGGAGTGTTGCAAATGCTAGAAGGATTCTCCTCTTTAAGCTGCATTGATATTTTATATAAAAGCATGACTGAGTTGAGTCCTGAGAGATGCTTGCGGTCAGATGAACTTAAAAACAAACTAAGTAAGCCTCGAATTTTTCCTACATTGGGAGTAAGGAACCAGATATTACCAATCAAAACAGCTGCGTTTACTCACAAATCAGGTTTTAAGGTCTTTGAAATTATTGATCCTAAATCCTCTCTTTCGGGAGGATTTGCAAGAGTGCCATTAACAATTATGGTTACGGATGACTTGCTTGTGACTCCAGTGTCATCATTTGATAGTGTTTCATATCTAGAGAGAATGAAGGTCCCTCTAAATGACATAGAGGAAATTGTCGTTGATATTGGAGTGAAGGAGGTAAAGGGAGTGTGTGAGACTTCATTTAGCATACCTTTTCCTTTTAATATTTCTCGATTGCATAATTTTTATCTAATATCTATTGTGCAGGGTCTGAGCATACTAAAAGCTTCATTGACCTCAACATCTGCTTTGACTAATGGCCTCAAACAGTACATAGGTGAGTAAAATGTTCAACCAAACAAAACCTCATAACACTTTATACATTATAATTAATACAAAAACAATATTAAGCTCGTGCAGAACTTTTTTTAATTTTATCTTTAGATTTTTACTGAATGTGACTCTATTCAAAAGTCATATGTGAAATACTCCTGTCCAATTAGTAGTAGTATGTAGTTTGGTCTATTAGCTAAGGGGATCCGAATGAGTTAACCACTTACTTACTACTACCATCTTCACATAAAAATTGGCAAACCAGTAAGGATCAGAATTAACCATTTGTTTACATTAATGCAAATCGTGGGTTCCACTCAATTCGTGCTTAAAAACACTGGATTTTGTTTTATAACATTTAAGAGTAATTTCGAATCTTTGATTATCTTTTGTTAATTTTTCTGTAACATATTCTGAATTAAAGCAATGATTTCCTTACATTTCTTATCAATATTATTTCTTATAACATGATTAGTATCTTACTTGTTATAAGTAGTACTTTATATATCTGTGTAATGAAAGGTAATCGTATATATGCCATGTACAAATGATTATTAAAGCTAGTGTGAAATATATAGAGGACAGTTAATGTTGACAAGAAAACGAATATAGAAGAAGAAGAGTTGGAAGAAAGGTTGAAATATAAGAAGAGAAGAGAGAAATGATCTTTTTTCCTTAATCATGGTGACTTGTTTCTTGTTAACAATTTTGATTTGCTACTCAATACTAAATTTACACAATTTTATGTGCGTATGTGCAACCTCAATTTAATCATGGTGTGAAATGATCTTTTTTCCTTAATCATCAAGTATACCTGTTCTGTCTAATTTGTTGTCTAATGCATCCTTTGACAGATGATCCTATGTGCAACCTGAAGAAGCCAAAAGAAGAAAAATGA
Protein sequence

>MS.gene45995.t1

MASSANQSSEQADKVSLKVMVDKVRKKVVYAEAGKDFVDVLFSFLTLPLGTIARLVAKDSNIEAVKFGSISSLYQSVTDLDHQYLWSKICKEMLQQPRNSMEGYCHKLKLNIDDTPRKYYRCIQCGRLTIFIWNQKCLCGRFTETEDIRPRDLFLDENGFVMETASFIIHDNLCVIPNDPVKNFILKKKPTYADEGLPSEEGKIGIGKGLPSEEDKLMLMKLLVRKSTRNILFGIADEDFADLLFSFLTFPLGGVLQMLEGFSSLSCIDILYKSMTELSPERCLRSDELKNKLSKPRIFPTLGVRNQILPIKTAAFTHKSGFKVFEIIDPKSSLSGGFARVPLTIMVTDDLLVTPVSSFDSVSYLERMKVPLNDIEEIVVDIGVKEGLSILKASLTSTSALTNGLKQYIDDPMCNLKKPKEEK