AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46013

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46013.t1 MTR_7g066260 92.308 494 32 1 1 488 1 494 0.0 935
MS.gene46013.t1 MTR_7g066290 66.379 464 119 4 1 457 1 434 0.0 574
MS.gene46013.t1 MTR_7g066360 64.386 497 152 9 1 488 1 481 0.0 565
MS.gene46013.t1 MTR_7g066340 57.320 485 180 7 9 483 6 473 1.57e-178 509
MS.gene46013.t1 MTR_7g066570 57.654 503 169 11 1 470 1 492 9.28e-177 509
MS.gene46013.t1 MTR_1g041315 57.112 457 170 7 3 440 2 451 8.49e-170 488
MS.gene46013.t1 MTR_7g066350 60.927 453 154 11 11 452 5 445 5.90e-167 479
MS.gene46013.t1 MTR_7g012680 55.414 471 178 8 3 462 2 451 1.01e-163 471
MS.gene46013.t1 MTR_7g066400 53.362 461 161 8 11 452 8 433 1.95e-157 455
MS.gene46013.t1 MTR_7g058710 51.400 500 176 14 1 456 1 477 4.10e-148 432
MS.gene46013.t1 MTR_7g066310 51.163 473 157 8 12 483 4 403 7.51e-144 419
MS.gene46013.t1 MTR_7g066580 50.412 486 158 14 21 462 1 447 6.85e-137 402
MS.gene46013.t1 MTR_7g058700 48.565 453 148 9 27 456 531 921 6.52e-120 374
MS.gene46013.t1 MTR_7g066430 43.737 487 224 12 15 456 4 485 2.91e-117 354
MS.gene46013.t1 MTR_7g066430 25.523 239 158 7 5 229 247 479 3.22e-12 68.9
MS.gene46013.t1 MTR_2g029400 44.259 479 151 11 6 446 5 405 2.67e-113 341
MS.gene46013.t1 MTR_7g066280 46.380 442 153 10 94 483 1 410 6.06e-113 340
MS.gene46013.t1 MTR_7g066280 25.869 259 132 10 11 229 146 384 6.60e-12 67.8
MS.gene46013.t1 MTR_7g066410 40.430 512 236 11 10 456 5 512 2.13e-109 335
MS.gene46013.t1 MTR_7g066410 26.556 241 157 8 2 229 273 506 3.49e-12 68.9
MS.gene46013.t1 MTR_7g066480 44.323 458 195 12 14 459 15 424 1.47e-101 311
MS.gene46013.t1 MTR_7g062300 40.956 481 240 9 6 454 3 471 1.73e-99 307
MS.gene46013.t1 MTR_7g063880 41.189 488 227 14 5 457 1 463 6.92e-98 303
MS.gene46013.t1 MTR_7g063660 40.084 479 232 11 14 454 8 469 3.66e-97 301
MS.gene46013.t1 MTR_7g062280 39.715 491 234 12 14 456 9 485 2.26e-96 300
MS.gene46013.t1 MTR_7g066490 43.848 447 197 14 15 459 16 410 6.11e-95 294
MS.gene46013.t1 MTR_7g063820 41.463 492 224 16 9 454 3 476 5.76e-92 288
MS.gene46013.t1 MTR_7g063900 41.317 501 226 17 1 454 1 480 1.12e-91 288
MS.gene46013.t1 MTR_7g063920 38.703 478 215 8 5 454 1 428 3.97e-88 277
MS.gene46013.t1 MTR_7g063890 42.300 487 219 14 14 454 26 496 6.65e-88 278
MS.gene46013.t1 MTR_7g063830 38.841 466 228 13 11 454 6 436 1.32e-85 271
MS.gene46013.t1 MTR_3g007740 40.851 470 212 15 14 454 8 440 1.51e-85 271
MS.gene46013.t1 MTR_7g063840 38.316 475 237 13 16 454 11 465 4.34e-84 268
MS.gene46013.t1 MTR_3g065200 37.609 460 202 13 15 443 3 408 2.96e-81 260
MS.gene46013.t1 MTR_4g019310 36.546 498 243 15 12 452 5 486 1.66e-79 256
MS.gene46013.t1 MTR_1g014060 60.386 207 71 4 28 227 13 215 1.63e-76 245
MS.gene46013.t1 MTR_1g014060 52.486 181 75 2 293 462 210 390 9.02e-45 162
MS.gene46013.t1 MTR_7g063670 39.149 470 219 14 16 454 16 449 5.60e-76 246
MS.gene46013.t1 MTR_4g017830 34.659 528 263 17 6 468 3 513 7.64e-75 245
MS.gene46013.t1 MTR_4g019340 35.343 481 241 16 16 444 39 501 4.45e-70 232
MS.gene46013.t1 MTR_7g066680 47.826 299 95 6 213 452 38 334 2.89e-66 217
MS.gene46013.t1 MTR_4g017440 33.661 508 258 18 8 452 7 498 7.48e-66 221
MS.gene46013.t1 MTR_4g017610 32.525 495 259 15 8 452 6 475 1.12e-65 219
MS.gene46013.t1 MTR_4g017410 34.216 491 265 16 9 453 3 481 1.16e-64 218
MS.gene46013.t1 MTR_2g067310 56.044 182 36 3 20 201 53 190 9.96e-54 181
MS.gene46013.t1 MTR_4g017550 33.612 479 227 20 42 454 18 471 1.08e-53 188
MS.gene46013.t1 MTR_4g017550 28.384 229 123 8 15 222 247 455 4.24e-11 65.5
MS.gene46013.t1 MTR_7g066390 54.974 191 51 3 304 494 1 156 2.09e-53 177
MS.gene46013.t1 MTR_4g017470 30.508 531 248 15 11 475 8 483 4.75e-53 186
MS.gene46013.t1 MTR_7g063720 43.564 202 102 4 266 456 26 226 1.11e-41 149
MS.gene46013.t1 MTR_7g062270 47.126 174 84 4 16 187 11 178 8.69e-41 151
MS.gene46013.t1 MTR_8g023240 29.303 488 264 21 16 457 38 490 4.58e-37 144
MS.gene46013.t1 MTR_7g100420 35.905 337 170 11 149 456 78 397 1.47e-32 129
MS.gene46013.t1 MTR_7g100420 59.322 59 20 1 16 70 40 98 3.29e-12 68.6
MS.gene46013.t1 MTR_7g063850 35.160 219 109 6 266 456 69 282 1.49e-27 112
MS.gene46013.t1 MTR_7g063690 32.624 282 111 9 16 290 13 222 4.25e-27 109
MS.gene46013.t1 MTR_1g115440 30.588 255 137 7 5 235 1 239 2.00e-24 102
MS.gene46013.t1 MTR_1g115440 25.641 234 137 4 253 450 1 233 2.74e-15 75.9
MS.gene46013.t1 MTR_8g445860 30.508 236 126 8 247 449 1 231 4.65e-23 98.2
MS.gene46013.t1 MTR_8g445860 29.958 237 139 7 15 235 13 238 6.74e-22 95.1
MS.gene46013.t1 MTR_0150s0010 30.638 235 145 4 14 235 9 238 3.22e-22 95.9
MS.gene46013.t1 MTR_0150s0010 28.636 220 120 6 266 449 13 231 1.54e-17 82.4
MS.gene46013.t1 MTR_4g019240 39.344 122 60 5 11 122 9 126 7.27e-18 82.0
MS.gene46013.t1 MTR_1g115450 40.000 85 46 1 15 99 7 86 1.53e-14 71.2
MS.gene46013.t1 MTR_7g063760 47.619 63 32 1 393 454 3 65 1.43e-13 66.2
MS.gene46013.t1 MTR_8g445910 40.000 95 48 3 15 105 8 97 4.52e-13 69.7
MS.gene46013.t1 MTR_8g044880 42.353 85 43 2 15 98 8 87 7.40e-13 69.3
MS.gene46013.t1 MTR_1g115455 41.176 85 45 1 15 99 9 88 8.57e-13 68.6
MS.gene46013.t1 MTR_0150s0030 37.895 95 50 3 15 105 8 97 1.90e-12 67.0
MS.gene46013.t1 MTR_1g115470 41.053 95 49 2 17 109 8 97 2.52e-12 69.3
MS.gene46013.t1 MTR_8g445920 40.000 80 43 1 14 93 9 83 1.23e-11 62.0
MS.gene46013.t1 MTR_8g044890 40.000 80 43 1 14 93 9 83 1.23e-11 62.0
MS.gene46013.t1 MTR_7g063870 45.833 72 34 1 9 75 25 96 4.97e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46013.t1 AT5G01120 30.550 491 288 13 16 460 10 493 8.09e-56 194
MS.gene46013.t1 AT5G43240 31.154 520 286 16 16 483 10 509 2.34e-55 193
MS.gene46013.t1 AT5G43240 31.154 520 286 16 16 483 10 509 2.34e-55 193
MS.gene46013.t1 AT5G43240 31.154 520 286 16 16 483 10 509 2.34e-55 193
MS.gene46013.t1 AT5G01130 32.026 459 272 11 15 456 9 444 3.12e-55 191
MS.gene46013.t1 AT3G09140 30.693 505 275 14 12 457 6 494 7.94e-53 186
MS.gene46013.t1 AT5G01150 30.250 519 285 14 17 487 11 500 4.20e-51 181
MS.gene46013.t1 AT3G09140 29.081 533 275 14 12 457 6 522 1.03e-48 176
MS.gene46013.t1 AT5G01140 28.884 502 278 13 17 489 11 462 1.04e-47 172
MS.gene46013.t1 AT3G09110 32.298 322 198 8 17 328 11 322 1.16e-44 160
MS.gene46013.t1 AT3G09120 32.298 322 189 10 10 314 1 310 8.29e-41 149
MS.gene46013.t1 AT5G37320 29.435 496 276 22 10 452 1 475 3.87e-38 145
MS.gene46013.t1 AT5G43240 29.268 369 198 13 162 483 13 365 2.13e-21 96.3

Find 91 sgRNAs with CRISPR-Local

Find 126 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTAAATCCTCTCTTTC+TGG 0.176316 7.2:-43693444 MS.gene46013:CDS
CTTACCATCTGATTCTAATA+AGG 0.204419 7.2:-43693814 MS.gene46013:CDS
GACAGACTTTATCTTTAAAA+AGG 0.227200 7.2:-43693889 MS.gene46013:CDS
GATATTGAAGCAGTGAAATT+TGG 0.241924 7.2:-43694497 MS.gene46013:CDS
CTAACCCAACGTTACGGTTT+AGG 0.261344 7.2:-43693848 MS.gene46013:CDS
GATTTCTATAAGTGGTTATA+CGG 0.266948 7.2:+43694273 None:intergenic
CAAAGGACCATTAACAATTA+TGG 0.282360 7.2:-43693412 MS.gene46013:CDS
TACGCCTCCATTGAGTTTCT+AGG 0.284614 7.2:+43694389 None:intergenic
CTGGTTCTTGAGTTCAAAAT+TGG 0.299308 7.2:+43693533 None:intergenic
TAGCATTTCTTTGCAGGTAT+TGG 0.307775 7.2:+43694418 None:intergenic
GTTGAGTAGCATTTCTTTGC+AGG 0.309715 7.2:+43694412 None:intergenic
TCTTGTAGGGGATATCTTAA+TGG 0.317613 7.2:-43694299 MS.gene46013:CDS
CGAAGTTACCTTGAGAGTTT+TGG 0.327948 7.2:-43694639 MS.gene46013:CDS
ACGTTCCAATTGGTAGTATC+TGG 0.342892 7.2:+43693514 None:intergenic
AATATCTATCAAAGCAGTTT+TGG 0.346758 7.2:+43692722 None:intergenic
CCTCCAGAAAGAGAGGATTT+AGG 0.352149 7.2:+43693441 None:intergenic
GCAAGGACTGGCAGTCTTGT+AGG 0.369793 7.2:-43694313 MS.gene46013:CDS
AAACTTGTTCCAAGATCATT+AGG 0.370772 7.2:+43694125 None:intergenic
TGAATGCAGAGAGATGTTTA+AGG 0.380741 7.2:-43693599 MS.gene46013:CDS
GGCAGGAAGTTCAACTGTTC+AGG 0.391352 7.2:-43692757 MS.gene46013:intron
TTACCATCTGATTCTAATAA+GGG 0.396508 7.2:-43693813 MS.gene46013:CDS
TGTGTGATGCCTAATGATCT+TGG 0.396811 7.2:-43694134 MS.gene46013:CDS
CTATCAAACGTGCAAGTTAA+CGG 0.406251 7.2:+43693489 None:intergenic
AGCTTCTTAACCTTACCATT+AGG 0.407652 7.2:-43694551 MS.gene46013:CDS
ATCTTGATGAACACTATCTA+TGG 0.410521 7.2:-43694442 MS.gene46013:CDS
TGTTGGGAATGGCTTTGTTA+AGG 0.411761 7.2:-43694189 MS.gene46013:CDS
ATTTCCTCCACGTCATTAAG+AGG 0.412745 7.2:+43693318 None:intergenic
TCTGTCACCATAATTGTTAA+TGG 0.421237 7.2:+43693405 None:intergenic
CTTGTAGGGGATATCTTAAT+GGG 0.429632 7.2:-43694298 MS.gene46013:CDS
GATTTCTATCCTATGGCATC+TGG 0.438641 7.2:-43694692 None:intergenic
TTAACTTGCACGTTTGATAG+TGG 0.443642 7.2:-43693486 MS.gene46013:CDS
CAAGGACTGGCAGTCTTGTA+GGG 0.455929 7.2:-43694312 MS.gene46013:CDS
CCAACGTTACGGTTTAGGAT+TGG 0.461151 7.2:-43693843 MS.gene46013:CDS
CAATCCTAAACCGTAACGTT+GGG 0.469960 7.2:+43693844 None:intergenic
AAAGTTGTATATGCTGAAGC+AGG 0.470963 7.2:-43694599 MS.gene46013:CDS
TAGATATGAAACAGCGTCAA+TGG 0.470976 7.2:+43693356 None:intergenic
TTAACAAAGCCATTCCCAAC+AGG 0.471013 7.2:+43694191 None:intergenic
AGTCTAGAAATAGTTCCTAA+TGG 0.475346 7.2:+43694536 None:intergenic
GCATTTCTGATTTCTATAAG+TGG 0.478212 7.2:+43694265 None:intergenic
AAAACGGATTTGACTCCTGT+TGG 0.478327 7.2:-43694206 MS.gene46013:CDS
ACGCCTCCATTGAGTTTCTA+GGG 0.488729 7.2:+43694390 None:intergenic
GATTTGACTCCTGTTGGGAA+TGG 0.494885 7.2:-43694200 MS.gene46013:CDS
CAAAGCTGCTGCCGTCAAAA+CGG 0.496324 7.2:-43694222 MS.gene46013:CDS
AAGAACCAGATACTACCAAT+TGG 0.496758 7.2:-43693519 MS.gene46013:CDS
GTTAACGGACACGTTCCAAT+TGG 0.498290 7.2:+43693504 None:intergenic
AAACGGATTTGACTCCTGTT+GGG 0.499817 7.2:-43694205 MS.gene46013:CDS
TTTCATTAGTATTGGTGTAG+AGG 0.502757 7.2:-43693295 MS.gene46013:CDS
GGAGTGTTGCAAATGCTAGA+AGG 0.519900 7.2:-43693672 MS.gene46013:CDS
CATTTGCAACACTCCTCCCA+TGG 0.530725 7.2:+43693680 None:intergenic
AATTATGGTGACAGACGACT+TGG 0.536351 7.2:-43693397 MS.gene46013:CDS
TCAACATCCGCTTTGACAAA+CGG 0.540818 7.2:-43693151 MS.gene46013:CDS
AGAAATAGTTCCTAATGGTA+AGG 0.545251 7.2:+43694541 None:intergenic
CATTAGTATTGGTGTAGAGG+AGG 0.546889 7.2:-43693292 MS.gene46013:intron
ACTCAACCCTAGAAACTCAA+TGG 0.548659 7.2:-43694396 MS.gene46013:CDS
GTAATTCTAACCCAACGTTA+CGG 0.548747 7.2:-43693854 MS.gene46013:CDS
TTACGGTTTAGGATTGGAAA+CGG 0.560759 7.2:-43693837 MS.gene46013:CDS
ATACCCTTATTAGAATCAGA+TGG 0.560811 7.2:+43693810 None:intergenic
CACTTTGATACAGTGTACTC+AGG 0.563119 7.2:+43694471 None:intergenic
TTTCTAACATTTCCCATGGG+AGG 0.563322 7.2:-43693693 MS.gene46013:CDS
ATCAGAAATGCATCTGTGGA+AGG 0.565067 7.2:-43694253 MS.gene46013:CDS
CCAATCCTAAACCGTAACGT+TGG 0.569630 7.2:+43693843 None:intergenic
TTAAAGATAAAGTCTGTCAG+AGG 0.571141 7.2:+43693894 None:intergenic
TTAGGATCAACAAGTTTCGC+GGG 0.571667 7.2:+43693459 None:intergenic
GACATATCCTCCAGAAAGAG+AGG 0.573373 7.2:+43693434 None:intergenic
TGTATATGCTGAAGCAGGGA+AGG 0.577810 7.2:-43694594 MS.gene46013:CDS
TTCATATCTAGAAAGAATGA+AGG 0.578901 7.2:-43693343 MS.gene46013:CDS
TTTAGGATCAACAAGTTTCG+CGG 0.579897 7.2:+43693458 None:intergenic
TATTTCTAGACTTGTAGCTA+AGG 0.580006 7.2:-43694525 MS.gene46013:CDS
CTTTCTGGAGGATATGTCAA+AGG 0.584702 7.2:-43693429 MS.gene46013:CDS
GGCTTCTTCAGGTTGTACAA+TGG 0.592081 7.2:+43692699 None:intergenic
TTACATTTGCTTCAGACACA+CGG 0.601680 7.2:-43694104 MS.gene46013:CDS
GTTGCAATGCCAGATGCCAT+AGG 0.603282 7.2:+43694683 None:intergenic
GTTGTCGACCAAAACTCTCA+AGG 0.611087 7.2:+43694631 None:intergenic
CTTGAGGCCGTTTGTCAAAG+CGG 0.611309 7.2:+43693144 None:intergenic
ACAGCGTCAATGGATGACAT+TGG 0.611356 7.2:+43693366 None:intergenic
TTTCCTCCACGTCATTAAGA+GGG 0.615237 7.2:+43693319 None:intergenic
ATTTGCAACACTCCTCCCAT+GGG 0.620362 7.2:+43693681 None:intergenic
GTTTGTCAAAGCGGATGTTG+AGG 0.622650 7.2:+43693153 None:intergenic
AGAAATCAGAAATGCATCTG+TGG 0.624051 7.2:-43694257 MS.gene46013:CDS
AAGTTGTATATGCTGAAGCA+GGG 0.633791 7.2:-43694598 MS.gene46013:CDS
AACGGCCTCAAGCAGTACAT+AGG 0.634113 7.2:-43693133 MS.gene46013:intron
CCTAAATCCTCTCTTTCTGG+AGG 0.635757 7.2:-43693441 MS.gene46013:CDS
TTGCACGTAAAATACTGCAC+AGG 0.642097 7.2:+43694332 None:intergenic
ACTAACCTATGTACTGCTTG+AGG 0.650754 7.2:+43693128 None:intergenic
GTACAACCTGAAGAAGCCAA+AGG 0.662118 7.2:-43692694 MS.gene46013:CDS
AAGGACTGGCAGTCTTGTAG+GGG 0.662149 7.2:-43694311 MS.gene46013:CDS
GAAGGTCCCTCTTAATGACG+TGG 0.665769 7.2:-43693325 MS.gene46013:CDS
GCAACTGAATCACTTGAACA+AGG 0.688328 7.2:-43694665 MS.gene46013:CDS
GGTCCCTCTTAATGACGTGG+AGG 0.689620 7.2:-43693322 MS.gene46013:CDS
CAACCCTAGAAACTCAATGG+AGG 0.697460 7.2:-43694393 MS.gene46013:CDS
ACACGGACTAAATGACACAG+CGG 0.784006 7.2:-43694087 MS.gene46013:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCAAGTTAATAATTTTTAAT+TGG - chr7.2:43694519-43694538 MS.gene46013:CDS 10.0%
!! TAAAAAATCAACAAAAAAGA+CGG + chr7.2:43693337-43693356 None:intergenic 15.0%
!! TTTAAAAAGGAAAAAATTCT+TGG - chr7.2:43693457-43693476 MS.gene46013:CDS 15.0%
!! AAAAGAAACATTCAAATCAT+TGG - chr7.2:43694267-43694286 MS.gene46013:CDS 20.0%
!! ACAATATTTGATTGCATATA+TGG - chr7.2:43694123-43694142 MS.gene46013:CDS 20.0%
!!! AAACTGCTACTTTTATAATT+CGG - chr7.2:43693167-43693186 MS.gene46013:CDS 20.0%
!!! TACTAATGTAAAGTTTTGTT+TGG + chr7.2:43694242-43694261 None:intergenic 20.0%
! AACTAAATATTGTTTCAACC+AGG - chr7.2:43694442-43694461 MS.gene46013:CDS 25.0%
! AGAAATAATAAGTACTACGA+CGG + chr7.2:43694356-43694375 None:intergenic 25.0%
! GATTTCTATAAGTGGTTATA+CGG + chr7.2:43693063-43693082 None:intergenic 25.0%
! TCTTTATATTTGCATGTACA+TGG - chr7.2:43694555-43694574 MS.gene46013:CDS 25.0%
! TTACCATCTGATTCTAATAA+GGG - chr7.2:43693520-43693539 MS.gene46013:CDS 25.0%
! TTCATATCTAGAAAGAATGA+AGG - chr7.2:43693990-43694009 MS.gene46013:intron 25.0%
!! AATATCTATCAAAGCAGTTT+TGG + chr7.2:43694614-43694633 None:intergenic 25.0%
!! GACAGACTTTATCTTTAAAA+AGG - chr7.2:43693444-43693463 MS.gene46013:CDS 25.0%
!! GAGGAAATTTTCATTAGTAT+TGG - chr7.2:43694030-43694049 MS.gene46013:intron 25.0%
!!! AAATGAGTTTTTATTTGTGC+AGG - chr7.2:43693378-43693397 MS.gene46013:CDS 25.0%
!!! AACTGCTACTTTTATAATTC+GGG - chr7.2:43693168-43693187 MS.gene46013:CDS 25.0%
AAAGGAAAAAGAAGAAGCTT+GGG - chr7.2:43694657-43694676 MS.gene46013:CDS 30.0%
AACACTAGTTATCAACAAGA+AGG - chr7.2:43693282-43693301 MS.gene46013:intron 30.0%
AGAAATAGTTCCTAATGGTA+AGG + chr7.2:43692795-43692814 None:intergenic 30.0%
AGTCTAGAAATAGTTCCTAA+TGG + chr7.2:43692800-43692819 None:intergenic 30.0%
ATACCCTTATTAGAATCAGA+TGG + chr7.2:43693526-43693545 None:intergenic 30.0%
ATCTTGATGAACACTATCTA+TGG - chr7.2:43692891-43692910 MS.gene46013:intron 30.0%
CAAAGGACCATTAACAATTA+TGG - chr7.2:43693921-43693940 MS.gene46013:CDS 30.0%
CTTACCATCTGATTCTAATA+AGG - chr7.2:43693519-43693538 MS.gene46013:CDS 30.0%
GATATTGAAGCAGTGAAATT+TGG - chr7.2:43692836-43692855 MS.gene46013:intron 30.0%
GCATTTCTGATTTCTATAAG+TGG + chr7.2:43693071-43693090 None:intergenic 30.0%
TCAAAATTGGCAAAAATACG+AGG + chr7.2:43693790-43693809 None:intergenic 30.0%
TCTGTCACCATAATTGTTAA+TGG + chr7.2:43693931-43693950 None:intergenic 30.0%
TTAAAGATAAAGTCTGTCAG+AGG + chr7.2:43693442-43693461 None:intergenic 30.0%
! AAACTTGTTCCAAGATCATT+AGG + chr7.2:43693211-43693230 None:intergenic 30.0%
! AGTTTTCTAACATTTCCCAT+GGG - chr7.2:43693637-43693656 MS.gene46013:CDS 30.0%
! TAGTTTTCTAACATTTCCCA+TGG - chr7.2:43693636-43693655 MS.gene46013:CDS 30.0%
!! TATTTCTAGACTTGTAGCTA+AGG - chr7.2:43692808-43692827 MS.gene46013:intron 30.0%
!! TTTCATTAGTATTGGTGTAG+AGG - chr7.2:43694038-43694057 MS.gene46013:intron 30.0%
AAAGTTGTATATGCTGAAGC+AGG - chr7.2:43692734-43692753 MS.gene46013:CDS 35.0%
AAGAACCAGATACTACCAAT+TGG - chr7.2:43693814-43693833 MS.gene46013:CDS 35.0%
AAGTTGTATATGCTGAAGCA+GGG - chr7.2:43692735-43692754 MS.gene46013:CDS 35.0%
AATTGTCATCGAATGAAGCA+TGG - chr7.2:43694490-43694509 MS.gene46013:CDS 35.0%
ACTAGTTATCAACAAGAAGG+AGG - chr7.2:43693285-43693304 MS.gene46013:intron 35.0%
AGAAATCAGAAATGCATCTG+TGG - chr7.2:43693076-43693095 MS.gene46013:intron 35.0%
AGCTTCTTAACCTTACCATT+AGG - chr7.2:43692782-43692801 MS.gene46013:intron 35.0%
CAAAGGAAAAAGAAGAAGCT+TGG - chr7.2:43694656-43694675 MS.gene46013:CDS 35.0%
CTATCAAACGTGCAAGTTAA+CGG + chr7.2:43693847-43693866 None:intergenic 35.0%
CTTACTTCTTGATCCAACTT+CGG + chr7.2:43694414-43694433 None:intergenic 35.0%
CTTGTAGGGGATATCTTAAT+GGG - chr7.2:43693035-43693054 MS.gene46013:intron 35.0%
GTAATTCTAACCCAACGTTA+CGG - chr7.2:43693479-43693498 MS.gene46013:CDS 35.0%
TAGATATGAAACAGCGTCAA+TGG + chr7.2:43693980-43693999 None:intergenic 35.0%
TAGCATTTCTTTGCAGGTAT+TGG + chr7.2:43692918-43692937 None:intergenic 35.0%
TATATTTGCATGTACATGGC+AGG - chr7.2:43694559-43694578 MS.gene46013:CDS 35.0%
TCTTGTAGGGGATATCTTAA+TGG - chr7.2:43693034-43693053 MS.gene46013:intron 35.0%
TGAATGCAGAGAGATGTTTA+AGG - chr7.2:43693734-43693753 MS.gene46013:CDS 35.0%
TGATTGCATATATGGTTGCA+GGG - chr7.2:43694131-43694150 MS.gene46013:CDS 35.0%
TTACATTTGCTTCAGACACA+CGG - chr7.2:43693229-43693248 MS.gene46013:intron 35.0%
TTGATTGCATATATGGTTGC+AGG - chr7.2:43694130-43694149 MS.gene46013:CDS 35.0%
! CAAGCTTCTTCTTTTTCCTT+TGG + chr7.2:43694658-43694677 None:intergenic 35.0%
! CTGGTTCTTGAGTTCAAAAT+TGG + chr7.2:43693803-43693822 None:intergenic 35.0%
! TTACGGTTTAGGATTGGAAA+CGG - chr7.2:43693496-43693515 MS.gene46013:CDS 35.0%
! TTTAGGATCAACAAGTTTCG+CGG + chr7.2:43693878-43693897 None:intergenic 35.0%
!! TTAACTTGCACGTTTGATAG+TGG - chr7.2:43693847-43693866 MS.gene46013:CDS 35.0%
AATTATGGTGACAGACGACT+TGG - chr7.2:43693936-43693955 MS.gene46013:CDS 40.0%
ACTAACCTATGTACTGCTTG+AGG + chr7.2:43694208-43694227 None:intergenic 40.0%
ACTCAACCCTAGAAACTCAA+TGG - chr7.2:43692937-43692956 MS.gene46013:intron 40.0%
ATCAGAAATGCATCTGTGGA+AGG - chr7.2:43693080-43693099 MS.gene46013:intron 40.0%
ATTGGTGTAGAGGAGGTAAA+TGG - chr7.2:43694048-43694067 MS.gene46013:intron 40.0%
ATTTCCTCCACGTCATTAAG+AGG + chr7.2:43694018-43694037 None:intergenic 40.0%
CAATCCTAAACCGTAACGTT+GGG + chr7.2:43693492-43693511 None:intergenic 40.0%
CACTTTGATACAGTGTACTC+AGG + chr7.2:43692865-43692884 None:intergenic 40.0%
GAGAACACGAATTTGAATCC+TGG + chr7.2:43694463-43694482 None:intergenic 40.0%
GATCCTAAATCCTCTCTTTC+TGG - chr7.2:43693889-43693908 MS.gene46013:CDS 40.0%
GCAACTGAATCACTTGAACA+AGG - chr7.2:43692668-43692687 MS.gene46013:CDS 40.0%
GTTGAGTAGCATTTCTTTGC+AGG + chr7.2:43692924-43692943 None:intergenic 40.0%
TCAACATCCGCTTTGACAAA+CGG - chr7.2:43694182-43694201 MS.gene46013:CDS 40.0%
TCCACGTTATGAAAGCAGAA+AGG - chr7.2:43694375-43694394 MS.gene46013:CDS 40.0%
TCCTTTCTGCTTTCATAACG+TGG + chr7.2:43694379-43694398 None:intergenic 40.0%
TGTGTGATGCCTAATGATCT+TGG - chr7.2:43693199-43693218 MS.gene46013:intron 40.0%
TTAACAAAGCCATTCCCAAC+AGG + chr7.2:43693145-43693164 None:intergenic 40.0%
TTAGGATCAACAAGTTTCGC+GGG + chr7.2:43693877-43693896 None:intergenic 40.0%
TTGCACGTAAAATACTGCAC+AGG + chr7.2:43693004-43693023 None:intergenic 40.0%
TTTCCTCCACGTCATTAAGA+GGG + chr7.2:43694017-43694036 None:intergenic 40.0%
TTTCTAACATTTCCCATGGG+AGG - chr7.2:43693640-43693659 MS.gene46013:CDS 40.0%
! AAAACGGATTTGACTCCTGT+TGG - chr7.2:43693127-43693146 MS.gene46013:intron 40.0%
! AAACGGATTTGACTCCTGTT+GGG - chr7.2:43693128-43693147 MS.gene46013:intron 40.0%
! ACGTTCCAATTGGTAGTATC+TGG + chr7.2:43693822-43693841 None:intergenic 40.0%
! AGGAGTCAAATCCGTTTTGA+CGG + chr7.2:43693125-43693144 None:intergenic 40.0%
! AGTATTTTACGTGCAAGGAC+TGG - chr7.2:43693008-43693027 MS.gene46013:intron 40.0%
! CGAAGTTACCTTGAGAGTTT+TGG - chr7.2:43692694-43692713 MS.gene46013:CDS 40.0%
! CTTTCTGGAGGATATGTCAA+AGG - chr7.2:43693904-43693923 MS.gene46013:CDS 40.0%
! TGTGCAGTATTTTACGTGCA+AGG - chr7.2:43693003-43693022 MS.gene46013:intron 40.0%
!! CATTAGTATTGGTGTAGAGG+AGG - chr7.2:43694041-43694060 MS.gene46013:intron 40.0%
!! CTTTTTCCTTTGGCTTCTTC+AGG + chr7.2:43694648-43694667 None:intergenic 40.0%
!! TGTTGGGAATGGCTTTGTTA+AGG - chr7.2:43693144-43693163 MS.gene46013:CDS 40.0%
AAGTCCTGGTAATCCGAAGT+TGG - chr7.2:43694398-43694417 MS.gene46013:CDS 45.0%
ACAGCGTCAATGGATGACAT+TGG + chr7.2:43693970-43693989 None:intergenic 45.0%
ACGCCTCCATTGAGTTTCTA+GGG + chr7.2:43692946-43692965 None:intergenic 45.0%
ATTTGCAACACTCCTCCCAT+GGG + chr7.2:43693655-43693674 None:intergenic 45.0%
CAACCCTAGAAACTCAATGG+AGG - chr7.2:43692940-43692959 MS.gene46013:intron 45.0%
CCAATCCTAAACCGTAACGT+TGG + chr7.2:43693493-43693512 None:intergenic 45.0%
CCTAAATCCTCTCTTTCTGG+AGG - chr7.2:43693892-43693911 MS.gene46013:CDS 45.0%
CCTCCAGAAAGAGAGGATTT+AGG + chr7.2:43693895-43693914 None:intergenic 45.0%
CTAACCCAACGTTACGGTTT+AGG - chr7.2:43693485-43693504 MS.gene46013:CDS 45.0%
GACATATCCTCCAGAAAGAG+AGG + chr7.2:43693902-43693921 None:intergenic 45.0%
GATTTGACTCCTGTTGGGAA+TGG - chr7.2:43693133-43693152 MS.gene46013:intron 45.0%
GTACAACCTGAAGAAGCCAA+AGG - chr7.2:43694639-43694658 MS.gene46013:CDS 45.0%
GTTGTCGACCAAAACTCTCA+AGG + chr7.2:43692705-43692724 None:intergenic 45.0%
GTTTGTCAAAGCGGATGTTG+AGG + chr7.2:43694183-43694202 None:intergenic 45.0%
TACGCCTCCATTGAGTTTCT+AGG + chr7.2:43692947-43692966 None:intergenic 45.0%
TGAAAGCAGAAAGGAAGTCC+TGG - chr7.2:43694384-43694403 MS.gene46013:CDS 45.0%
TGATCCAACTTCGGATTACC+AGG + chr7.2:43694405-43694424 None:intergenic 45.0%
TGTATATGCTGAAGCAGGGA+AGG - chr7.2:43692739-43692758 MS.gene46013:CDS 45.0%
! ACACGGACTAAATGACACAG+CGG - chr7.2:43693246-43693265 MS.gene46013:intron 45.0%
! CCAACGTTACGGTTTAGGAT+TGG - chr7.2:43693490-43693509 MS.gene46013:CDS 45.0%
! GTTAACGGACACGTTCCAAT+TGG + chr7.2:43693832-43693851 None:intergenic 45.0%
!! GGAGTGTTGCAAATGCTAGA+AGG - chr7.2:43693661-43693680 MS.gene46013:CDS 45.0%
!! GGCTTCTTCAGGTTGTACAA+TGG + chr7.2:43694637-43694656 None:intergenic 45.0%
AACGGCCTCAAGCAGTACAT+AGG - chr7.2:43694200-43694219 MS.gene46013:CDS 50.0%
CAAAGCTGCTGCCGTCAAAA+CGG - chr7.2:43693111-43693130 MS.gene46013:intron 50.0%
CATTTGCAACACTCCTCCCA+TGG + chr7.2:43693656-43693675 None:intergenic 50.0%
CTTGAGGCCGTTTGTCAAAG+CGG + chr7.2:43694192-43694211 None:intergenic 50.0%
GAAGGTCCCTCTTAATGACG+TGG - chr7.2:43694008-43694027 MS.gene46013:intron 50.0%
GGCAGGAAGTTCAACTGTTC+AGG - chr7.2:43694576-43694595 MS.gene46013:CDS 50.0%
! AAGGACTGGCAGTCTTGTAG+GGG - chr7.2:43693022-43693041 MS.gene46013:intron 50.0%
! CAAGGACTGGCAGTCTTGTA+GGG - chr7.2:43693021-43693040 MS.gene46013:intron 50.0%
GGTCCCTCTTAATGACGTGG+AGG - chr7.2:43694011-43694030 MS.gene46013:intron 55.0%
! GCAAGGACTGGCAGTCTTGT+AGG - chr7.2:43693020-43693039 MS.gene46013:intron 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 43692653 43694702 43692653 ID=MS.gene46013
chr7.2 mRNA 43692653 43694702 43692653 ID=MS.gene46013.t1;Parent=MS.gene46013
chr7.2 exon 43694067 43694702 43694067 ID=MS.gene46013.t1.exon1;Parent=MS.gene46013.t1
chr7.2 CDS 43694067 43694702 43694067 ID=cds.MS.gene46013.t1;Parent=MS.gene46013.t1
chr7.2 exon 43693293 43693955 43693293 ID=MS.gene46013.t1.exon2;Parent=MS.gene46013.t1
chr7.2 CDS 43693293 43693955 43693293 ID=cds.MS.gene46013.t1;Parent=MS.gene46013.t1
chr7.2 exon 43693134 43693203 43693134 ID=MS.gene46013.t1.exon3;Parent=MS.gene46013.t1
chr7.2 CDS 43693134 43693203 43693134 ID=cds.MS.gene46013.t1;Parent=MS.gene46013.t1
chr7.2 exon 43692653 43692774 43692653 ID=MS.gene46013.t1.exon4;Parent=MS.gene46013.t1
chr7.2 CDS 43692653 43692774 43692653 ID=cds.MS.gene46013.t1;Parent=MS.gene46013.t1
Gene Sequence

>MS.gene46013

ATGGCATCTGGCATTGCAACTGAATCACTTGAACAAGGTGACGAAGTTACCTTGAGAGTTTTGGTCGACAACGAAATAAACAAAGTTGTATATGCTGAAGCAGGGAAGGATTTTGTCGATGCTCTTTTCAGCTTCTTAACCTTACCATTAGGAACTATTTCTAGACTTGTAGCTAAGGAGTCAGATATTGAAGCAGTGAAATTTGGCAGCCTGAGTACACTGTATCAAAGTGTATCAGATCTTGATGAACACTATCTATGGTCCAATACCTGCAAAGAAATGCTACTCAACCCTAGAAACTCAATGGAGGCGTATTGTCAACAGCTCAAACTGAATATCGATGACACACCTGTGCAGTATTTTACGTGCAAGGACTGGCAGTCTTGTAGGGGATATCTTAATGGGAGCCGTATAACCACTTATAGAAATCAGAAATGCATCTGTGGAAGGCTTTTGAACAAAGCTGCTGCCGTCAAAACGGATTTGACTCCTGTTGGGAATGGCTTTGTTAAGGAAACTGCTACTTTTATAATTCGGGATGATCTTTGTGTGATGCCTAATGATCTTGGAACAAGTTTACATTTGCTTCAGACACACGGACTAAATGACACAGCGGATGTTGAGAAAAAAACACTAGTTATCAACAAGAAGGAGGCATGTTTTCTCAGTTTCTATATATCACCGTCTTTTTTGTTGATTTTTTAGATGAATTTATATTATTCTTAAAATGAGTTTTTATTTGTGCAGGTAGTTGATCTTCTAAAATTGTCGTTGCTCTCAAAAACTCCTCTGACAGACTTTATCTTTAAAAAGGAAAAAATTCTTGGTAATTCTAACCCAACGTTACGGTTTAGGATTGGAAACGGCTTACCATCTGATTCTAATAAGGGTATGAAGAATATGATTGTGAAAGTATTGCTAAGAAAATCAAAAAGAAAAATTTTGTTTGCTACAGCAAATGAAGATTTTGCAGATTTTCTTTTTAGTTTTCTAACATTTCCCATGGGAGGAGTGTTGCAAATGCTAGAAGGATTCTCTTCTTTAAGCTGCATTGATATTTTATATAAAAGCATGACTGAGTTGAATGCAGAGAGATGTTTAAGGTCACAGAAACTCAAAGACAAACTAACTAAGCCTCGTATTTTTGCCAATTTTGAACTCAAGAACCAGATACTACCAATTGGAACGTGTCCGTTAACTTGCACGTTTGATAGTGGTGAACCCGCGAAACTTGTTGATCCTAAATCCTCTCTTTCTGGAGGATATGTCAAAGGACCATTAACAATTATGGTGACAGACGACTTGGTTGTGACTCCAATGTCATCCATTGACGCTGTTTCATATCTAGAAAGAATGAAGGTCCCTCTTAATGACGTGGAGGAAATTTTCATTAGTATTGGTGTAGAGGAGGTAAATGGAGTGTGTGAGATTTTAGTTTTAATATTTCTTGTTTCAGACTCATAACAACTAACAATATTTGATTGCATATATGGTTGCAGGGTCTCAGTATACTAAAAGCTTCATTGACCTCAACATCCGCTTTGACAAACGGCCTCAAGCAGTACATAGGTTAGTATAGCATTCAACCAAACAAAACTTTACATTAGTATTTATAAAAGAAACATTCAAATCATTGGTTTTATACACTTCTTGCGTAAAAAAAATTTATCATCAATATTCATTTAGCATGCATATCGCATCCGTCGTAGTACTTATTATTTCTCCACGTTATGAAAGCAGAAAGGAAGTCCTGGTAATCCGAAGTTGGATCAAGAAGTAAGTAAAGTCTAACTAAATATTGTTTCAACCAGGATTCAAATTCGTGTTCTCTCAAAAAAATTGTCATCGAATGAAGCATGGTTGTTGTCAAGTTAATAATTTTTAATTGGTACTAATTACACTTCTTTATATTTGCATGTACATGGCAGGAAGTTCAACTGTTCAGGCTAATTTGTCATCCAAAACTGCTTTGATAGATATTCCATTGTACAACCTGAAGAAGCCAAAGGAAAAAGAAGAAGCTTGGGCTAATCTATGTTTTGATAACTGA
Protein sequence

>MS.gene46013.t1

MASGIATESLEQGDEVTLRVLVDNEINKVVYAEAGKDFVDALFSFLTLPLGTISRLVAKESDIEAVKFGSLSTLYQSVSDLDEHYLWSNTCKEMLLNPRNSMEAYCQQLKLNIDDTPVQYFTCKDWQSCRGYLNGSRITTYRNQKCICGRLLNKAAAVKTDLTPVGNGFVKETATFIIRDDLCVMPNDLGTSLHLLQTHGLNDTADVEKKTLVVDLLKLSLLSKTPLTDFIFKKEKILGNSNPTLRFRIGNGLPSDSNKGMKNMIVKVLLRKSKRKILFATANEDFADFLFSFLTFPMGGVLQMLEGFSSLSCIDILYKSMTELNAERCLRSQKLKDKLTKPRIFANFELKNQILPIGTCPLTCTFDSGEPAKLVDPKSSLSGGYVKGPLTIMVTDDLVVTPMSSIDAVSYLERMKVPLNDVEEIFISIGVEEGLSILKASLTSTSALTNGLKQYIGSSTVQANLSSKTALIDIPLYNLKKPKEKEEAWANLCFDN