AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055259

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055259.t1 MTR_7g062280 80.612 490 82 1 5 481 3 492 0.0 790
MS.gene055259.t1 MTR_7g062300 81.092 476 83 4 1 473 1 472 0.0 759
MS.gene055259.t1 MTR_7g063920 65.762 479 121 3 3 481 2 437 0.0 592
MS.gene055259.t1 MTR_7g063840 57.233 477 194 7 8 481 5 474 8.79e-175 499
MS.gene055259.t1 MTR_7g063880 57.143 483 186 7 3 480 2 468 1.86e-170 488
MS.gene055259.t1 MTR_7g063900 54.747 495 204 9 1 481 1 489 3.36e-164 473
MS.gene055259.t1 MTR_7g063900 28.340 247 152 8 13 243 253 490 2.28e-11 66.2
MS.gene055259.t1 MTR_7g063660 55.187 482 202 6 7 481 4 478 5.47e-164 472
MS.gene055259.t1 MTR_7g063830 53.445 479 183 9 5 480 3 444 2.09e-155 449
MS.gene055259.t1 MTR_7g063820 53.498 486 214 6 5 481 3 485 1.03e-154 449
MS.gene055259.t1 MTR_3g007740 52.610 479 176 10 8 475 5 443 2.07e-148 431
MS.gene055259.t1 MTR_7g063890 53.753 493 205 11 4 480 19 504 8.25e-145 424
MS.gene055259.t1 MTR_7g063670 50.202 494 194 10 1 481 4 458 8.06e-139 407
MS.gene055259.t1 MTR_7g066570 40.283 494 269 7 1 478 1 484 1.16e-109 336
MS.gene055259.t1 MTR_7g066430 41.212 495 244 12 13 474 5 485 1.14e-105 324
MS.gene055259.t1 MTR_3g065200 43.764 457 199 12 12 461 3 408 1.69e-105 322
MS.gene055259.t1 MTR_7g066260 40.974 493 228 10 6 474 9 462 2.30e-104 320
MS.gene055259.t1 MTR_7g066410 38.189 508 272 7 10 476 8 514 6.50e-104 320
MS.gene055259.t1 MTR_7g066410 27.083 240 152 7 4 229 276 506 3.73e-12 68.9
MS.gene055259.t1 MTR_7g058710 38.171 503 270 13 1 481 1 484 6.11e-99 306
MS.gene055259.t1 MTR_7g066480 40.000 475 206 10 12 475 16 422 4.08e-97 300
MS.gene055259.t1 MTR_7g012680 38.788 495 246 12 1 481 1 452 7.62e-97 300
MS.gene055259.t1 MTR_7g066360 41.020 490 224 15 1 470 1 445 1.80e-91 286
MS.gene055259.t1 MTR_7g066580 38.542 480 231 12 24 477 7 448 1.98e-89 280
MS.gene055259.t1 MTR_7g066580 27.660 235 147 9 11 230 214 440 3.59e-12 68.6
MS.gene055259.t1 MTR_7g066340 35.976 492 258 10 1 474 1 453 2.14e-89 281
MS.gene055259.t1 MTR_7g066350 39.203 477 246 10 11 476 8 451 5.68e-89 280
MS.gene055259.t1 MTR_7g066490 37.924 472 204 10 12 474 16 407 1.63e-85 269
MS.gene055259.t1 MTR_7g062270 67.027 185 60 1 4 187 1 185 4.40e-83 262
MS.gene055259.t1 MTR_7g066400 35.091 493 249 11 1 476 1 439 1.37e-81 260
MS.gene055259.t1 MTR_7g063720 54.032 248 97 3 235 481 2 233 7.84e-81 251
MS.gene055259.t1 MTR_7g063720 31.193 218 126 8 14 229 25 220 1.58e-16 79.3
MS.gene055259.t1 MTR_1g041315 35.593 472 247 10 11 458 13 451 3.92e-80 258
MS.gene055259.t1 MTR_1g041315 26.364 220 118 9 5 219 271 451 4.70e-12 68.6
MS.gene055259.t1 MTR_4g019310 34.118 510 288 14 6 481 2 497 3.45e-75 245
MS.gene055259.t1 MTR_7g058700 35.967 481 202 14 24 481 531 928 1.96e-74 252
MS.gene055259.t1 MTR_7g066290 40.822 365 196 7 1 349 1 361 1.66e-72 236
MS.gene055259.t1 MTR_7g066290 61.404 57 22 0 414 470 373 429 4.74e-14 74.3
MS.gene055259.t1 MTR_7g066310 32.618 466 224 8 11 474 6 383 7.91e-67 220
MS.gene055259.t1 MTR_7g066310 29.333 225 119 9 8 229 190 377 8.25e-16 79.7
MS.gene055259.t1 MTR_7g063850 44.375 320 125 10 182 480 1 288 3.07e-65 213
MS.gene055259.t1 MTR_2g029400 32.083 480 229 9 2 463 4 404 4.33e-65 216
MS.gene055259.t1 MTR_4g017830 30.740 527 298 17 1 480 1 507 5.50e-62 211
MS.gene055259.t1 MTR_4g017410 30.755 530 274 17 4 480 1 490 4.40e-56 194
MS.gene055259.t1 MTR_4g017440 31.068 515 289 17 6 474 8 502 3.35e-55 192
MS.gene055259.t1 MTR_4g017610 31.263 499 287 16 4 470 1 475 9.37e-54 187
MS.gene055259.t1 MTR_4g019340 30.550 491 278 14 10 462 36 501 4.58e-53 186
MS.gene055259.t1 MTR_4g017470 28.820 517 290 15 1 480 1 476 4.90e-51 181
MS.gene055259.t1 MTR_7g100420 38.436 307 173 4 168 470 99 393 6.23e-49 173
MS.gene055259.t1 MTR_7g100420 66.000 50 17 0 6 55 33 82 2.39e-12 68.9
MS.gene055259.t1 MTR_7g066280 30.882 408 240 9 91 474 1 390 7.24e-48 170
MS.gene055259.t1 MTR_1g014060 46.377 207 101 7 21 222 9 210 2.96e-46 166
MS.gene055259.t1 MTR_1g014060 39.594 197 104 3 285 481 210 391 2.84e-32 127
MS.gene055259.t1 MTR_1g014060 30.986 213 138 5 268 474 13 222 1.58e-17 84.7
MS.gene055259.t1 MTR_7g066680 34.754 305 146 6 212 470 37 334 4.30e-42 153
MS.gene055259.t1 MTR_7g066680 26.154 195 105 6 4 179 79 253 1.26e-13 72.4
MS.gene055259.t1 MTR_8g023240 26.132 486 289 15 13 468 38 483 1.92e-39 150
MS.gene055259.t1 MTR_4g017550 29.140 477 262 18 42 470 21 469 1.34e-35 138
MS.gene055259.t1 MTR_4g017550 28.992 238 128 8 13 228 248 466 3.87e-13 71.6
MS.gene055259.t1 MTR_7g063690 46.479 142 74 1 143 282 81 222 5.04e-33 125
MS.gene055259.t1 MTR_7g063690 50.000 96 31 3 3 81 2 97 6.49e-17 80.5
MS.gene055259.t1 MTR_7g063760 59.459 74 29 1 409 481 1 74 1.56e-22 91.7
MS.gene055259.t1 MTR_8g445860 31.356 236 138 6 13 235 14 238 3.32e-22 95.9
MS.gene055259.t1 MTR_1g115440 29.114 237 131 8 255 468 11 233 4.85e-21 92.4
MS.gene055259.t1 MTR_1g115440 30.120 249 148 7 1 234 1 238 2.77e-20 90.1
MS.gene055259.t1 MTR_0150s0010 30.738 244 146 7 5 234 3 237 2.71e-19 87.4
MS.gene055259.t1 MTR_7g066390 55.072 69 31 0 402 470 50 118 8.88e-18 80.9
MS.gene055259.t1 MTR_2g067310 36.196 163 65 5 18 180 53 176 6.89e-17 80.5
MS.gene055259.t1 MTR_1g115455 27.347 245 153 7 4 235 1 233 5.11e-14 72.0
MS.gene055259.t1 MTR_7g063870 57.143 56 24 0 6 61 25 80 1.23e-13 71.2
MS.gene055259.t1 MTR_7g063870 55.932 59 26 0 161 219 99 157 9.30e-13 68.6
MS.gene055259.t1 MTR_1g115450 36.585 123 68 4 13 133 8 122 3.79e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055259.t1 AT3G09140 32.554 513 288 15 4 476 1 495 8.85e-63 212
MS.gene055259.t1 AT5G01150 29.981 517 291 14 4 480 1 486 1.36e-58 201
MS.gene055259.t1 AT5G01120 32.335 501 271 15 13 470 10 485 1.71e-58 201
MS.gene055259.t1 AT3G09140 30.869 541 288 16 4 476 1 523 1.08e-57 199
MS.gene055259.t1 AT5G01130 30.769 494 283 13 4 481 1 451 3.65e-56 193
MS.gene055259.t1 AT5G01140 29.268 492 300 11 4 481 1 458 5.60e-54 188
MS.gene055259.t1 AT3G09110 37.107 318 175 9 14 316 11 318 2.84e-53 183
MS.gene055259.t1 AT3G09120 36.842 323 166 8 11 309 5 313 6.11e-49 171
MS.gene055259.t1 AT3G09120 30.435 230 138 7 255 468 6 229 8.86e-15 75.5
MS.gene055259.t1 AT5G43240 29.134 508 282 13 13 470 10 489 8.44e-48 172
MS.gene055259.t1 AT5G43240 29.134 508 282 13 13 470 10 489 8.44e-48 172
MS.gene055259.t1 AT5G43240 29.134 508 282 13 13 470 10 489 8.44e-48 172
MS.gene055259.t1 AT5G37320 27.075 506 293 17 13 476 10 481 2.80e-34 134
MS.gene055259.t1 AT5G43240 25.150 334 201 8 167 470 31 345 6.33e-14 73.6

Find 88 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTGTTATGTTCGGAATT+TGG 0.224670 7.4:-41441443 MS.gene055259:CDS
TAACTAGCTTTAGATTGATT+TGG 0.246947 7.4:+41441824 None:intergenic
GGTGGAATTGTTCGAATATT+TGG 0.267420 7.4:-41441715 MS.gene055259:CDS
TTATCTAATGTGATGATTCT+TGG 0.284310 7.4:-41441409 MS.gene055259:CDS
CATCCGATGATGTCAAATAT+TGG 0.288315 7.4:+41441629 None:intergenic
CCTGGTGTTCTTGTATATTA+TGG 0.298994 7.4:-41441532 MS.gene055259:CDS
TTTGGTCTGTTCCTGGAGTT+TGG 0.304695 7.4:-41442115 MS.gene055259:CDS
AGTGAGCCAAACCATTTGTT+AGG 0.310955 7.4:+41441082 None:intergenic
GTACAAGAGTATAGTTGATT+TGG 0.317989 7.4:-41441659 MS.gene055259:CDS
TACAAGCTTTGGTCTGTTCC+TGG 0.318052 7.4:-41442122 MS.gene055259:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.4:+41441319 None:intergenic
CCCTAGTTCGGTAAAAGAAT+TGG 0.336544 7.4:-41442083 MS.gene055259:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.4:+41442633 None:intergenic
ACTAACTCCAATTTCAGCTT+TGG 0.370659 7.4:-41441326 MS.gene055259:CDS
ATTAGGAACCATTGCGAGAT+TGG 0.373320 7.4:-41442536 MS.gene055259:CDS
TTCTGCCCTAACAAATGGTT+TGG 0.386717 7.4:-41441088 MS.gene055259:CDS
CTTGTATAGTCAATACAGTT+TGG 0.402654 7.4:+41442139 None:intergenic
TGTATTGACTATACAAGCTT+TGG 0.403859 7.4:-41442133 MS.gene055259:CDS
CTAACTCCAATTTCAGCTTT+GGG 0.410822 7.4:-41441325 MS.gene055259:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7.4:-41442601 MS.gene055259:CDS
ATTTGGTGGGAATTGTTCCT+TGG 0.418722 7.4:-41441698 MS.gene055259:CDS
TTGTGTGATGTTGAAATTAG+TGG 0.425723 7.4:-41441853 MS.gene055259:CDS
TCACTTGTTAACTGAAGTTA+AGG 0.432297 7.4:-41441064 MS.gene055259:CDS
TCAACTTCTGCCCTAACAAA+TGG 0.432471 7.4:-41441093 MS.gene055259:CDS
AACCATCCCTTGAGAGATCA+AGG 0.434730 7.4:-41441882 MS.gene055259:CDS
TAATCTTCCGCTGAGTTGAT+TGG 0.438608 7.4:+41442391 None:intergenic
AGAACACCAGGATCAAGAAT+TGG 0.440155 7.4:+41441544 None:intergenic
TACTCCGATTAATGATTTGA+AGG 0.442148 7.4:-41441284 MS.gene055259:CDS
GGGAGAGGTTTAAGGAAAAC+TGG 0.450764 7.4:+41442220 None:intergenic
ATATTACCAATTCTTGATCC+TGG 0.456535 7.4:-41441550 MS.gene055259:CDS
AAAGCTGAAATTGGAGTTAG+TGG 0.457923 7.4:+41441328 None:intergenic
GAATAGAATATTGTTATGTT+CGG 0.460953 7.4:-41441450 MS.gene055259:CDS
TATACCGTTAACAAATCCTT+GGG 0.463791 7.4:+41442198 None:intergenic
TGCTTGCTTAACTGTAACTG+TGG 0.466072 7.4:+41441574 None:intergenic
TCTGAATGTCACCAAAGAAA+AGG 0.469867 7.4:-41442059 MS.gene055259:intron
CTATACCGTTAACAAATCCT+TGG 0.473418 7.4:+41442197 None:intergenic
TTTGGTGGGAATTGTTCCTT+GGG 0.483082 7.4:-41441697 MS.gene055259:CDS
TTGTTCCTTGGGAAGCATCA+AGG 0.483499 7.4:-41441686 MS.gene055259:CDS
CATTAATCGGAGTATTCAAT+CGG 0.492599 7.4:+41441293 None:intergenic
GTAGTGTCTTAGCATATTGA+AGG 0.492781 7.4:-41441127 MS.gene055259:intron
AATCTCGCAATGGTTCCTAA+TGG 0.500485 7.4:+41442538 None:intergenic
CTTGGTGATGGTTATGTCAA+GGG 0.507572 7.4:-41441391 MS.gene055259:CDS
AACAAGGTATTGTATGCTCA+AGG 0.515072 7.4:-41441787 MS.gene055259:CDS
AGTTGTCACTCTTGGCATCA+AGG 0.517260 7.4:-41441257 MS.gene055259:CDS
GGAATTGTTCGAATATTTGG+TGG 0.517282 7.4:-41441712 MS.gene055259:CDS
TAGGAACATGTGAAGTACTT+TGG 0.517369 7.4:+41442328 None:intergenic
AGATAAACCTTGATCTCTCA+AGG 0.517631 7.4:+41441875 None:intergenic
CATCATCGGATGCTAAGAAC+AGG 0.519251 7.4:-41441618 MS.gene055259:CDS
TCTGTAGCAAAATACATAGC+TGG 0.536774 7.4:+41441367 None:intergenic
TGTTCCTTGGGAAGCATCAA+GGG 0.538972 7.4:-41441685 MS.gene055259:CDS
CTTGTTTGCAGAAGCAGGGA+AGG 0.539743 7.4:-41442596 MS.gene055259:CDS
GTGAGCCAAACCATTTGTTA+GGG 0.543465 7.4:+41441083 None:intergenic
GAATTGTTCGAATATTTGGT+GGG 0.543684 7.4:-41441711 MS.gene055259:CDS
TTTCTTACATATCCTTTGGG+TGG 0.551503 7.4:-41441733 MS.gene055259:CDS
AACCTTGATCTCTCAAGGGA+TGG 0.552278 7.4:+41441880 None:intergenic
AGAAGCAGGGAAGGACTTTG+TGG 0.556414 7.4:-41442587 MS.gene055259:CDS
CTTGTTAACTGAAGTTAAGG+AGG 0.561757 7.4:-41441061 MS.gene055259:CDS
AAACCAATATTTGACATCAT+CGG 0.567419 7.4:-41441632 MS.gene055259:CDS
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7.4:-41442600 MS.gene055259:CDS
TGTAACTGTGGGGCAATGCA+AGG 0.575144 7.4:+41441586 None:intergenic
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.4:-41442527 MS.gene055259:CDS
CCATAATATACAAGAACACC+AGG 0.581295 7.4:+41441532 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7.4:-41442513 MS.gene055259:CDS
AGCATAGGGCAAGTTACAGT+CGG 0.590026 7.4:-41442499 MS.gene055259:CDS
GCTTGCTTAACTGTAACTGT+GGG 0.590306 7.4:+41441575 None:intergenic
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7.4:-41442514 MS.gene055259:CDS
TCTTGGTGATGGTTATGTCA+AGG 0.594179 7.4:-41441392 MS.gene055259:CDS
TGAAGGTTGTTTCTCTACTG+AGG 0.594448 7.4:-41442437 MS.gene055259:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.4:+41442528 None:intergenic
TTATATTTATCTTTATACGT+TGG 0.605271 7.4:+41442271 None:intergenic
TGGTGTGATCATATCGCGAT+AGG 0.608401 7.4:+41442291 None:intergenic
AATGTGATGATTCTTGGTGA+TGG 0.622784 7.4:-41441403 MS.gene055259:CDS
CAATCCCTTGATGCTTCCCA+AGG 0.623539 7.4:+41441681 None:intergenic
GATAAACCTTGATCTCTCAA+GGG 0.630404 7.4:+41441876 None:intergenic
TATAAGAAAATCAGATAACA+AGG 0.631180 7.4:-41441803 MS.gene055259:CDS
ATTCGAACAATTCCACCCAA+AGG 0.640069 7.4:+41441721 None:intergenic
ACAAGGTATTGTATGCTCAA+GGG 0.641517 7.4:-41441786 MS.gene055259:CDS
GATAAATATAAATGTCAATG+TGG 0.642959 7.4:-41442259 MS.gene055259:CDS
TATTACTTCTACTCAAGCAG+AGG 0.660221 7.4:-41442665 MS.gene055259:CDS
AAACTCACTCTATAGAAGTG+TGG 0.661607 7.4:-41442470 MS.gene055259:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.672765 7.4:-41442454 MS.gene055259:CDS
GAACATGTGAAGTACTTTGG+TGG 0.674394 7.4:+41442331 None:intergenic
AGGTTTAAGGAAAACTGGAA+CGG 0.680550 7.4:+41442225 None:intergenic
TACCGTTAACAAATCCTTGG+GGG 0.682251 7.4:+41442200 None:intergenic
ATACCGTTAACAAATCCTTG+GGG 0.683086 7.4:+41442199 None:intergenic
TGTCACTCTTGGCATCAAGG+AGG 0.739488 7.4:-41441254 MS.gene055259:intron
GCTGCAACCAATCAACTCAG+CGG 0.749919 7.4:-41442398 MS.gene055259:CDS
CTTGCTTAACTGTAACTGTG+GGG 0.751008 7.4:+41441576 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAATATAAATTTTACTA+TGG + chr7.4:41442502-41442521 None:intergenic 10.0%
!! TTATATTTATCTTTATACGT+TGG + chr7.4:41441458-41441477 None:intergenic 15.0%
!! GAATAGAATATTGTTATGTT+CGG - chr7.4:41442276-41442295 MS.gene055259:CDS 20.0%
!! GATAAATATAAATGTCAATG+TGG - chr7.4:41441467-41441486 MS.gene055259:CDS 20.0%
!! TATAAGAAAATCAGATAACA+AGG - chr7.4:41441923-41441942 MS.gene055259:CDS 20.0%
!!! CATTTACAAATTTTCAAATC+TGG - chr7.4:41442254-41442273 MS.gene055259:CDS 20.0%
!!! TTTTCCTTCAAATCATTAAT+CGG + chr7.4:41442449-41442468 None:intergenic 20.0%
! AAACCAATATTTGACATCAT+CGG - chr7.4:41442094-41442113 MS.gene055259:CDS 25.0%
! ATAGGAGCAAAAATTAAAGT+AGG + chr7.4:41441420-41441439 None:intergenic 25.0%
! ATATTGTTATGTTCGGAATT+TGG - chr7.4:41442283-41442302 MS.gene055259:CDS 25.0%
! TTATCTAATGTGATGATTCT+TGG - chr7.4:41442317-41442336 MS.gene055259:CDS 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.4:41441098-41441117 MS.gene055259:CDS 25.0%
!! AAGTTTTCTTACATATCCTT+TGG - chr7.4:41441989-41442008 MS.gene055259:intron 25.0%
!! AGTTTTCTTACATATCCTTT+GGG - chr7.4:41441990-41442009 MS.gene055259:intron 25.0%
!!! TAACTAGCTTTAGATTGATT+TGG + chr7.4:41441905-41441924 None:intergenic 25.0%
ATATTACCAATTCTTGATCC+TGG - chr7.4:41442176-41442195 MS.gene055259:CDS 30.0%
CTTGTATAGTCAATACAGTT+TGG + chr7.4:41441590-41441609 None:intergenic 30.0%
GAATTGTTCGAATATTTGGT+GGG - chr7.4:41442015-41442034 MS.gene055259:intron 30.0%
TACTCCGATTAATGATTTGA+AGG - chr7.4:41442442-41442461 MS.gene055259:CDS 30.0%
TATACCGTTAACAAATCCTT+GGG + chr7.4:41441531-41441550 None:intergenic 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.4:41441096-41441115 None:intergenic 30.0%
TTGTGTGATGTTGAAATTAG+TGG - chr7.4:41441873-41441892 MS.gene055259:CDS 30.0%
! AGCTTTTTAACAATGCCATT+AGG - chr7.4:41441173-41441192 MS.gene055259:intron 30.0%
! CAAACACAAAACCTTTTCTT+TGG + chr7.4:41441681-41441700 None:intergenic 30.0%
! CATTAATCGGAGTATTCAAT+CGG + chr7.4:41442436-41442455 None:intergenic 30.0%
! GTACAAGAGTATAGTTGATT+TGG - chr7.4:41442067-41442086 MS.gene055259:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7.4:41442367-41442386 MS.gene055259:CDS 30.0%
! TCACTTGTTAACTGAAGTTA+AGG - chr7.4:41442662-41442681 MS.gene055259:CDS 30.0%
!! TGTATTGACTATACAAGCTT+TGG - chr7.4:41441593-41441612 MS.gene055259:CDS 30.0%
AAACTCACTCTATAGAAGTG+TGG - chr7.4:41441256-41441275 MS.gene055259:CDS 35.0%
AAAGCTGAAATTGGAGTTAG+TGG + chr7.4:41442401-41442420 None:intergenic 35.0%
AAGGAAAAAGTTGTCACTCT+TGG - chr7.4:41442461-41442480 MS.gene055259:CDS 35.0%
AATGTGATGATTCTTGGTGA+TGG - chr7.4:41442323-41442342 MS.gene055259:CDS 35.0%
ACTAACTCCAATTTCAGCTT+TGG - chr7.4:41442400-41442419 MS.gene055259:CDS 35.0%
AGATAAACCTTGATCTCTCA+AGG + chr7.4:41441854-41441873 None:intergenic 35.0%
AGGTTTAAGGAAAACTGGAA+CGG + chr7.4:41441504-41441523 None:intergenic 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.4:41442410-41442429 None:intergenic 35.0%
ATACCGTTAACAAATCCTTG+GGG + chr7.4:41441530-41441549 None:intergenic 35.0%
CATCCGATGATGTCAAATAT+TGG + chr7.4:41442100-41442119 None:intergenic 35.0%
CCATAATATACAAGAACACC+AGG + chr7.4:41442197-41442216 None:intergenic 35.0%
CCTGGTGTTCTTGTATATTA+TGG - chr7.4:41442194-41442213 MS.gene055259:CDS 35.0%
CTAACTCCAATTTCAGCTTT+GGG - chr7.4:41442401-41442420 MS.gene055259:CDS 35.0%
CTATACCGTTAACAAATCCT+TGG + chr7.4:41441532-41441551 None:intergenic 35.0%
CTTGTTAACTGAAGTTAAGG+AGG - chr7.4:41442665-41442684 MS.gene055259:CDS 35.0%
GATAAACCTTGATCTCTCAA+GGG + chr7.4:41441853-41441872 None:intergenic 35.0%
GGAATTGTTCGAATATTTGG+TGG - chr7.4:41442014-41442033 MS.gene055259:intron 35.0%
GGTGGAATTGTTCGAATATT+TGG - chr7.4:41442011-41442030 MS.gene055259:intron 35.0%
GTAGTGTCTTAGCATATTGA+AGG - chr7.4:41442599-41442618 MS.gene055259:CDS 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7.4:41441213-41441232 MS.gene055259:intron 35.0%
TATTACTTCTACTCAAGCAG+AGG - chr7.4:41441061-41441080 MS.gene055259:CDS 35.0%
TCTGAATGTCACCAAAGAAA+AGG - chr7.4:41441667-41441686 MS.gene055259:CDS 35.0%
TCTGTAGCAAAATACATAGC+TGG + chr7.4:41442362-41442381 None:intergenic 35.0%
TGGCATAAAAAACCCTAGTT+CGG - chr7.4:41441631-41441650 MS.gene055259:CDS 35.0%
TTTCTTACATATCCTTTGGG+TGG - chr7.4:41441993-41442012 MS.gene055259:intron 35.0%
! ACCAATTCTTTTACCGAACT+AGG + chr7.4:41441647-41441666 None:intergenic 35.0%
! CCAATTCTTTTACCGAACTA+GGG + chr7.4:41441646-41441665 None:intergenic 35.0%
! TAGGAACATGTGAAGTACTT+TGG + chr7.4:41441401-41441420 None:intergenic 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7.4:41441939-41441958 MS.gene055259:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7.4:41441940-41441959 MS.gene055259:CDS 35.0%
AATCTCGCAATGGTTCCTAA+TGG + chr7.4:41441191-41441210 None:intergenic 40.0%
AGAACACCAGGATCAAGAAT+TGG + chr7.4:41442185-41442204 None:intergenic 40.0%
AGTGAGCCAAACCATTTGTT+AGG + chr7.4:41442647-41442666 None:intergenic 40.0%
ATTAGGAACCATTGCGAGAT+TGG - chr7.4:41441190-41441209 MS.gene055259:intron 40.0%
ATTCGAACAATTCCACCCAA+AGG + chr7.4:41442008-41442027 None:intergenic 40.0%
CCCTAGTTCGGTAAAAGAAT+TGG - chr7.4:41441643-41441662 MS.gene055259:CDS 40.0%
CTTGCTTAACTGTAACTGTG+GGG + chr7.4:41442153-41442172 None:intergenic 40.0%
GCTTGCTTAACTGTAACTGT+GGG + chr7.4:41442154-41442173 None:intergenic 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7.4:41441212-41441231 MS.gene055259:intron 40.0%
TACCGTTAACAAATCCTTGG+GGG + chr7.4:41441529-41441548 None:intergenic 40.0%
TCAACTTCTGCCCTAACAAA+TGG - chr7.4:41442633-41442652 MS.gene055259:CDS 40.0%
TGCTTGCTTAACTGTAACTG+TGG + chr7.4:41442155-41442174 None:intergenic 40.0%
TTCTGCCCTAACAAATGGTT+TGG - chr7.4:41442638-41442657 MS.gene055259:CDS 40.0%
TTTGGTGGGAATTGTTCCTT+GGG - chr7.4:41442029-41442048 MS.gene055259:intron 40.0%
! ATTTGGTGGGAATTGTTCCT+TGG - chr7.4:41442028-41442047 MS.gene055259:intron 40.0%
! GAACATGTGAAGTACTTTGG+TGG + chr7.4:41441398-41441417 None:intergenic 40.0%
! GTGAGCCAAACCATTTGTTA+GGG + chr7.4:41442646-41442665 None:intergenic 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.4:41441125-41441144 MS.gene055259:CDS 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG - chr7.4:41441126-41441145 MS.gene055259:CDS 40.0%
!! CTTGGTGATGGTTATGTCAA+GGG - chr7.4:41442335-41442354 MS.gene055259:CDS 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG + chr7.4:41441338-41441357 None:intergenic 40.0%
!! TCTTGGTGATGGTTATGTCA+AGG - chr7.4:41442334-41442353 MS.gene055259:CDS 40.0%
!! TGAAGGTTGTTTCTCTACTG+AGG - chr7.4:41441289-41441308 MS.gene055259:CDS 40.0%
!!! GGTTTTTTATGCCAAACTCC+AGG + chr7.4:41441625-41441644 None:intergenic 40.0%
AACCATCCCTTGAGAGATCA+AGG - chr7.4:41441844-41441863 MS.gene055259:CDS 45.0%
AACCTTGATCTCTCAAGGGA+TGG + chr7.4:41441849-41441868 None:intergenic 45.0%
AGCATAGGGCAAGTTACAGT+CGG - chr7.4:41441227-41441246 MS.gene055259:intron 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7.4:41441272-41441291 MS.gene055259:CDS 45.0%
AGTTGTCACTCTTGGCATCA+AGG - chr7.4:41442469-41442488 MS.gene055259:CDS 45.0%
CATCATCGGATGCTAAGAAC+AGG - chr7.4:41442108-41442127 MS.gene055259:CDS 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.4:41441199-41441218 MS.gene055259:intron 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.4:41441201-41441220 None:intergenic 45.0%
GGGAGAGGTTTAAGGAAAAC+TGG + chr7.4:41441509-41441528 None:intergenic 45.0%
TGGTGTGATCATATCGCGAT+AGG + chr7.4:41441438-41441457 None:intergenic 45.0%
TTAACAAATCCTTGGGGGAG+AGG + chr7.4:41441524-41441543 None:intergenic 45.0%
TTTGGTCTGTTCCTGGAGTT+TGG - chr7.4:41441611-41441630 MS.gene055259:CDS 45.0%
! TACAAGCTTTGGTCTGTTCC+TGG - chr7.4:41441604-41441623 MS.gene055259:CDS 45.0%
!! CTCCCCCAAGGATTTGTTAA+CGG - chr7.4:41441524-41441543 MS.gene055259:CDS 45.0%
!! TGTTCCTTGGGAAGCATCAA+GGG - chr7.4:41442041-41442060 MS.gene055259:intron 45.0%
!! TTGTTCCTTGGGAAGCATCA+AGG - chr7.4:41442040-41442059 MS.gene055259:intron 45.0%
!! ATAGTAAAATATTTAAATAA+TGG + chr7.4:41442536-41442555 None:intergenic 5.0%
!! TAGTAAAATATTTAAATAAT+GGG + chr7.4:41442535-41442554 None:intergenic 5.0%
!!! TATTACTATTTTATATATAT+AGG - chr7.4:41441755-41441774 MS.gene055259:CDS 5.0%
AGAAGCAGGGAAGGACTTTG+TGG - chr7.4:41441139-41441158 MS.gene055259:intron 50.0%
ATCCTTGGGGGAGAGGTTTA+AGG + chr7.4:41441517-41441536 None:intergenic 50.0%
CAATCCCTTGATGCTTCCCA+AGG + chr7.4:41442048-41442067 None:intergenic 50.0%
CTTGTTTGCAGAAGCAGGGA+AGG - chr7.4:41441130-41441149 MS.gene055259:intron 50.0%
GCTGCAACCAATCAACTCAG+CGG - chr7.4:41441328-41441347 MS.gene055259:CDS 50.0%
TGTAACTGTGGGGCAATGCA+AGG + chr7.4:41442143-41442162 None:intergenic 50.0%
TGTCACTCTTGGCATCAAGG+AGG - chr7.4:41442472-41442491 MS.gene055259:CDS 50.0%
TTCCTTAAACCTCTCCCCCA+AGG - chr7.4:41441512-41441531 MS.gene055259:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 41441053 41442695 41441053 ID=MS.gene055259
chr7.4 mRNA 41441053 41442695 41441053 ID=MS.gene055259.t1;Parent=MS.gene055259
chr7.4 exon 41442060 41442695 41442060 ID=MS.gene055259.t1.exon1;Parent=MS.gene055259.t1
chr7.4 CDS 41442060 41442695 41442060 ID=cds.MS.gene055259.t1;Parent=MS.gene055259.t1
chr7.4 exon 41441255 41441971 41441255 ID=MS.gene055259.t1.exon2;Parent=MS.gene055259.t1
chr7.4 CDS 41441255 41441971 41441255 ID=cds.MS.gene055259.t1;Parent=MS.gene055259.t1
chr7.4 exon 41441053 41441145 41441053 ID=MS.gene055259.t1.exon3;Parent=MS.gene055259.t1
chr7.4 CDS 41441053 41441145 41441053 ID=cds.MS.gene055259.t1;Parent=MS.gene055259.t1
Gene Sequence

>MS.gene055259

ATGGCTGCTATTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTGGATATTCTCTGTAGCTTTTTAACAATGCCATTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAGAAGTGTGGCAGATCTTGATGAAGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATTGCGACACTCTTAAACTCAACATTGATGACAATCAACCACCAAAGTACTTCACATGTTCCTACTTTAATTTTTGCTCCTATCGCGATATGATCACACCAACGTATAAAGATAAATATAAATGTCAATGTGGTCGTTCTTTTACCGTTCCAGTTTTCCTTAAACCTCTCCCCCAAGGATTTGTTAACGGTATAGCTACATATGTCATAACTGATGATCTGTTTGTCATGCCAAACTGTATTGACTATACAAGCTTTGGTCTGTTCCTGGAGTTTGGCATAAAAAACCCTAGTTCGGTAAAAGAATTGGTTCTGAATGTCACCAAAGAAAAGGTTTTGTGTTTGAATATTGCGTTTGTTTATAACTTCTCTCTAATTTTTTTGATTGATTATAACTACTATTACTATTTTATATATATAGGTACTTGATCTGCTAAAGTGTTCTTTGCTTTCGAAGTCAACTTTGACAAATTTGTTTCTAGAGAAGAAACCATCCCTTGAGAGATCAAGGTTTATCTTGTGTGATGTTGAAATTAGTGGCAATATCCAAATCAATCTAAAGCTAGTTATAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGCAGCAAGATTTTGCAAACTTACTTTTAAGTTTTCTTACATATCCTTTGGGTGGAATTGTTCGAATATTTGGTGGGAATTGTTCCTTGGGAAGCATCAAGGGATTGTACAAGAGTATAGTTGATTTGGATGAAAACCAATATTTGACATCATCGGATGCTAAGAACAGGCTTGTTGATCCTTGCATTGCCCCACAGTTACAGTTAAGCAAGCAGATATTACCAATTCTTGATCCTGGTGTTCTTGTATATTATGGTGATGTTAAAAGTTCTGCTAACAGTAATAATATTATTCATTTACAAATTTTCAAATCTGGAATAGAATATTGTTATGTTCGGAATTTGGAGAAACTGAATTTATCTAATGTGATGATTCTTGGTGATGGTTATGTCAAGGGTCCAGCTATGTATTTTGCTACAGATGATTTGGTTGTAGCACCACTAACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTGAATACTCCGATTAATGATTTGAAGGAAAAAGTTGTCACTCTTGGCATCAAGGAGGTAAACCATAGTAAAATTTATATTTGATTTTTAATTTTCCCATTATTTAAATATTTTACTATGAGATAATTTCTCGATTGCTTATGTTTCACTTTTTGTCTTGTTGTAGTGTCTTAGCATATTGAAGGCTGCTTTGACTTCAACTTCTGCCCTAACAAATGGTTTGGCTCACTTGTTAACTGAAGTTAAGGAGGAGAAATGA
Protein sequence

>MS.gene055259.t1

MAAITSTQAEEHVSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQVTVGCLNSLYRSVADLDEGCFSTEAIKQMLLQPINSAEDYCDTLKLNIDDNQPPKYFTCSYFNFCSYRDMITPTYKDKYKCQCGRSFTVPVFLKPLPQGFVNGIATYVITDDLFVMPNCIDYTSFGLFLEFGIKNPSSVKELVLNVTKEKVLDLLKCSLLSKSTLTNLFLEKKPSLERSRFILCDVEISGNIQINLKLVIRKSDNKVLYAQGQQDFANLLLSFLTYPLGGIVRIFGGNCSLGSIKGLYKSIVDLDENQYLTSSDAKNRLVDPCIAPQLQLSKQILPILDPGVLVYYGDVKSSANSNNIIHLQIFKSGIEYCYVRNLEKLNLSNVMILGDGYVKGPAMYFATDDLVVAPLTPISALGLLNRLNTPINDLKEKVVTLGIKECLSILKAALTSTSALTNGLAHLLTEVKEEK