AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94749

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94749.t1 MTR_7g066310 58.629 394 143 4 1 374 13 406 9.00e-151 431
MS.gene94749.t1 MTR_7g066580 47.955 440 133 8 1 346 1 438 5.31e-126 370
MS.gene94749.t1 MTR_7g012680 51.168 428 124 9 1 349 20 441 6.27e-123 362
MS.gene94749.t1 MTR_7g066350 71.600 250 66 2 118 363 211 459 9.24e-114 339
MS.gene94749.t1 MTR_7g066350 63.121 141 47 1 1 141 15 150 3.00e-52 180
MS.gene94749.t1 MTR_7g066400 64.427 253 78 3 118 358 190 442 1.48e-106 320
MS.gene94749.t1 MTR_7g066400 61.947 113 23 3 1 110 18 113 2.34e-33 129
MS.gene94749.t1 MTR_7g066340 44.880 459 168 11 1 374 18 476 3.62e-106 320
MS.gene94749.t1 MTR_1g041315 69.778 225 63 2 118 337 227 451 4.51e-105 318
MS.gene94749.t1 MTR_1g041315 65.254 118 40 1 1 118 20 136 5.72e-47 167
MS.gene94749.t1 MTR_2g029400 45.966 409 130 11 2 343 21 405 2.20e-103 311
MS.gene94749.t1 MTR_1g014060 47.872 376 162 10 4 349 9 380 3.45e-95 289
MS.gene94749.t1 MTR_7g066280 42.615 413 125 8 74 374 1 413 2.69e-90 278
MS.gene94749.t1 MTR_7g066260 60.408 245 79 5 118 349 219 458 9.07e-85 266
MS.gene94749.t1 MTR_7g066260 70.536 112 30 2 1 111 21 130 1.51e-44 160
MS.gene94749.t1 MTR_7g066570 54.909 275 84 6 117 353 208 480 3.15e-80 256
MS.gene94749.t1 MTR_7g066570 68.293 123 38 1 1 123 20 141 2.31e-47 169
MS.gene94749.t1 MTR_7g066680 46.644 298 94 6 118 350 38 335 4.24e-73 231
MS.gene94749.t1 MTR_7g066490 38.983 413 157 8 1 349 22 403 1.34e-72 232
MS.gene94749.t1 MTR_7g063920 34.856 416 198 7 1 349 17 426 8.42e-71 228
MS.gene94749.t1 MTR_7g063920 28.497 193 118 8 164 347 10 191 2.32e-12 68.2
MS.gene94749.t1 MTR_7g058710 46.350 274 101 7 118 350 206 474 1.20e-64 213
MS.gene94749.t1 MTR_7g058710 67.273 110 23 2 1 110 18 114 1.79e-41 152
MS.gene94749.t1 MTR_7g066360 53.112 241 94 5 118 349 215 445 2.44e-62 207
MS.gene94749.t1 MTR_7g066360 67.826 115 35 1 1 115 20 132 3.34e-44 159
MS.gene94749.t1 MTR_7g058700 49.576 236 80 4 118 353 725 921 2.99e-62 214
MS.gene94749.t1 MTR_7g058700 61.765 102 24 2 9 110 533 619 2.44e-30 123
MS.gene94749.t1 MTR_7g066290 55.042 238 76 5 118 350 219 430 1.79e-61 204
MS.gene94749.t1 MTR_7g066290 71.429 112 29 3 1 111 21 130 2.20e-43 156
MS.gene94749.t1 MTR_7g062300 32.967 455 196 14 1 349 18 469 5.69e-61 203
MS.gene94749.t1 MTR_7g063880 35.347 447 186 16 1 349 17 458 2.08e-60 202
MS.gene94749.t1 MTR_7g066430 41.392 273 119 5 118 349 209 481 4.61e-57 194
MS.gene94749.t1 MTR_7g066430 51.818 110 52 1 1 110 10 118 2.72e-31 124
MS.gene94749.t1 MTR_7g063900 34.047 467 186 12 1 349 16 478 5.75e-53 183
MS.gene94749.t1 MTR_3g065200 32.160 426 177 9 1 340 9 408 1.12e-51 179
MS.gene94749.t1 MTR_4g017470 30.022 453 209 10 1 349 18 466 1.30e-49 174
MS.gene94749.t1 MTR_4g017470 29.412 204 108 6 168 349 15 204 1.09e-11 66.6
MS.gene94749.t1 MTR_7g066410 38.267 277 127 4 118 350 233 509 3.32e-47 168
MS.gene94749.t1 MTR_7g066410 57.798 109 45 1 2 110 17 124 1.88e-35 136
MS.gene94749.t1 MTR_7g100420 33.418 392 180 13 1 352 45 395 1.34e-41 150
MS.gene94749.t1 MTR_7g066390 48.295 176 59 2 206 375 1 150 5.17e-41 142
MS.gene94749.t1 MTR_7g066480 38.034 234 113 4 118 349 214 417 3.60e-38 142
MS.gene94749.t1 MTR_7g066480 55.738 122 49 1 1 117 22 143 1.23e-31 124
MS.gene94749.t1 MTR_4g017830 34.520 281 132 6 118 349 220 497 4.62e-37 140
MS.gene94749.t1 MTR_4g017830 43.478 115 59 2 1 109 18 132 1.57e-19 90.5
MS.gene94749.t1 MTR_7g063720 37.321 209 115 3 158 350 15 223 7.73e-37 134
MS.gene94749.t1 MTR_7g062280 32.830 265 138 4 118 349 224 481 8.03e-37 139
MS.gene94749.t1 MTR_7g062280 52.294 109 51 1 1 109 16 123 9.24e-28 114
MS.gene94749.t1 MTR_7g063820 34.815 270 133 6 118 350 212 475 4.31e-36 137
MS.gene94749.t1 MTR_7g063820 54.310 116 51 2 1 116 16 129 1.94e-29 119
MS.gene94749.t1 MTR_4g019310 33.452 281 131 8 118 354 223 491 2.61e-35 135
MS.gene94749.t1 MTR_4g019310 44.248 113 54 2 1 105 14 125 5.06e-21 94.7
MS.gene94749.t1 MTR_3g007740 37.751 249 132 7 118 349 196 438 5.52e-35 134
MS.gene94749.t1 MTR_3g007740 52.041 98 35 1 1 98 15 100 5.41e-21 94.4
MS.gene94749.t1 MTR_7g063830 34.440 241 135 4 118 350 210 435 1.63e-33 129
MS.gene94749.t1 MTR_7g063830 50.909 110 54 0 1 110 16 125 1.67e-30 121
MS.gene94749.t1 MTR_4g019340 35.743 249 132 5 118 341 256 501 8.25e-33 128
MS.gene94749.t1 MTR_4g019340 43.333 120 57 1 1 109 44 163 6.09e-20 91.7
MS.gene94749.t1 MTR_4g019340 34.513 113 67 2 4 116 312 417 1.43e-12 69.3
MS.gene94749.t1 MTR_7g063660 54.206 107 48 1 1 107 15 120 2.66e-32 127
MS.gene94749.t1 MTR_7g063660 31.835 267 143 5 118 350 207 468 7.92e-32 125
MS.gene94749.t1 MTR_7g063840 32.319 263 140 6 118 349 208 463 8.88e-32 125
MS.gene94749.t1 MTR_7g063840 56.000 100 44 0 1 100 16 115 1.41e-27 113
MS.gene94749.t1 MTR_7g063890 54.955 111 49 1 1 111 33 142 6.96e-31 123
MS.gene94749.t1 MTR_7g063890 36.000 275 127 9 118 349 226 494 4.53e-24 103
MS.gene94749.t1 MTR_7g063670 34.118 255 153 6 118 361 208 458 7.19e-31 122
MS.gene94749.t1 MTR_7g063670 44.762 105 45 2 1 105 21 112 3.92e-17 82.8
MS.gene94749.t1 MTR_4g017610 33.712 264 134 9 118 350 223 476 1.55e-29 119
MS.gene94749.t1 MTR_4g017610 47.414 116 53 3 2 109 20 135 1.48e-22 99.0
MS.gene94749.t1 MTR_4g017550 32.246 276 140 9 118 349 197 469 1.32e-28 116
MS.gene94749.t1 MTR_7g062270 56.000 100 44 0 1 100 16 115 4.06e-28 114
MS.gene94749.t1 MTR_4g017440 31.408 277 143 5 118 350 226 499 7.57e-28 114
MS.gene94749.t1 MTR_4g017440 44.538 119 54 3 1 107 20 138 5.49e-20 91.7
MS.gene94749.t1 MTR_7g063850 30.126 239 124 6 159 364 60 288 1.35e-26 107
MS.gene94749.t1 MTR_4g017410 31.439 264 141 8 118 349 225 480 7.11e-24 103
MS.gene94749.t1 MTR_4g017410 46.218 119 54 2 1 109 15 133 1.29e-23 102
MS.gene94749.t1 MTR_8g445860 28.261 230 120 6 158 346 6 231 4.10e-21 91.7
MS.gene94749.t1 MTR_8g445860 36.709 79 45 1 1 79 19 92 6.92e-11 62.4
MS.gene94749.t1 MTR_2g067310 66.129 62 21 0 6 67 58 119 1.70e-20 89.7
MS.gene94749.t1 MTR_0150s0010 28.444 225 119 4 163 346 8 231 4.06e-19 85.9
MS.gene94749.t1 MTR_0150s0010 39.241 79 43 1 1 79 16 89 5.73e-11 62.4
MS.gene94749.t1 MTR_1g115440 29.075 227 115 8 164 347 10 233 6.64e-19 85.5
MS.gene94749.t1 MTR_4g019240 47.126 87 38 3 2 80 20 106 3.00e-16 76.6
MS.gene94749.t1 MTR_7g063760 45.946 74 38 2 289 361 2 74 5.25e-14 67.0
MS.gene94749.t1 MTR_1g115450 37.975 79 44 1 1 79 13 86 2.49e-12 64.3
MS.gene94749.t1 MTR_8g023240 26.022 269 152 8 118 347 223 483 1.07e-11 66.6
MS.gene94749.t1 MTR_1g115455 31.933 119 67 4 1 113 15 125 1.74e-11 63.9
MS.gene94749.t1 MTR_1g115470 39.506 81 44 1 1 81 12 87 8.69e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94749.t1 AT3G09110 48.598 107 54 1 1 107 15 120 6.29e-26 107
MS.gene94749.t1 AT3G09140 45.133 113 59 2 1 111 15 126 4.71e-23 100
MS.gene94749.t1 AT3G09140 29.151 271 144 7 118 349 228 489 2.20e-20 92.8
MS.gene94749.t1 AT3G09140 45.133 113 59 2 1 111 15 126 5.25e-23 100
MS.gene94749.t1 AT3G09140 29.151 271 144 7 118 349 256 517 2.87e-20 92.8
MS.gene94749.t1 AT5G01140 29.434 265 146 7 118 350 193 448 2.04e-22 98.6
MS.gene94749.t1 AT5G01120 44.762 105 57 1 1 105 15 118 4.21e-22 98.2
MS.gene94749.t1 AT5G01120 28.102 274 150 7 118 349 217 485 1.12e-19 90.9
MS.gene94749.t1 AT5G43240 42.105 114 61 2 1 110 15 127 9.48e-22 97.1
MS.gene94749.t1 AT5G43240 29.927 274 146 9 118 349 220 489 1.89e-18 87.0
MS.gene94749.t1 AT5G43240 42.105 114 61 2 1 110 15 127 9.48e-22 97.1
MS.gene94749.t1 AT5G43240 29.927 274 146 9 118 349 220 489 1.89e-18 87.0
MS.gene94749.t1 AT5G43240 42.105 114 61 2 1 110 15 127 9.48e-22 97.1
MS.gene94749.t1 AT5G43240 29.927 274 146 9 118 349 220 489 1.89e-18 87.0
MS.gene94749.t1 AT5G01130 28.287 251 146 8 118 349 205 440 4.19e-20 91.7
MS.gene94749.t1 AT5G01130 40.367 109 59 1 2 104 16 124 6.50e-18 85.5
MS.gene94749.t1 AT3G09120 45.361 97 52 1 1 97 12 107 5.23e-20 90.1
MS.gene94749.t1 AT5G01150 45.000 100 55 0 1 100 15 114 5.99e-20 91.7
MS.gene94749.t1 AT5G01150 30.531 226 117 7 158 349 256 475 1.32e-16 81.6
MS.gene94749.t1 AT5G43240 29.197 274 148 8 118 349 76 345 2.23e-18 85.9
MS.gene94749.t1 AT5G37320 40.196 102 59 2 5 105 19 119 2.98e-17 83.6
MS.gene94749.t1 AT5G37320 26.766 269 138 9 121 350 228 476 8.11e-14 73.2

Find 81 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTCAGTTTCATATTT+TGG 0.076946 7.1:-35513380 None:intergenic
CCCTTTCTTCCACGTCATTA+AGG 0.156917 7.1:-35514404 None:intergenic
TGACTGACTTTATCTTTAAA+AGG 0.177394 7.1:+35513854 MS.gene94749:CDS
CTAGTAAATCCTCCTGAAAT+AGG 0.201033 7.1:-35514288 None:intergenic
CAAGAAATCTATGGGAGTTT+TGG 0.225060 7.1:+35513902 MS.gene94749:CDS
CGGCCTCAACCTTTGCATTA+TGG 0.233958 7.1:+35514614 MS.gene94749:CDS
GATCCTAAATCCCCTATTTC+AGG 0.246380 7.1:+35514276 MS.gene94749:CDS
CCTCCTGAAATAGGGGATTT+AGG 0.250440 7.1:-35514279 None:intergenic
CAAAACTCCCATAGATTTCT+TGG 0.250653 7.1:-35513901 None:intergenic
TTTCCCGGCAGTATGGAATT+AGG 0.305303 7.1:+35514196 MS.gene94749:CDS
ATTTAGACCCAAGAAATCTA+TGG 0.325037 7.1:+35513893 MS.gene94749:CDS
TAGTAAATCCTCCTGAAATA+GGG 0.341655 7.1:-35514287 None:intergenic
AATATGGAAGCAGTAAAATT+TGG 0.347826 7.1:+35513246 MS.gene94749:CDS
CGTGGCTAAGGAGTCAAATA+TGG 0.360424 7.1:+35513230 MS.gene94749:CDS
CCTCCTCTTTCCCGGCAGTA+TGG 0.364490 7.1:+35514189 MS.gene94749:CDS
CCTTTCTTCCACGTCATTAA+GGG 0.369088 7.1:-35514403 None:intergenic
TCTGCCACCATGAATGTTAC+TGG 0.369545 7.1:-35514315 None:intergenic
ACAGAAGAAGTTTGACTTCA+AGG 0.383899 7.1:-35513415 None:intergenic
GCAGTGTTACATGTGCTTCA+AGG 0.393480 7.1:+35514063 MS.gene94749:CDS
ATCTTGACCAACAATATATA+TGG 0.395510 7.1:+35513301 MS.gene94749:CDS
AGCTTCTTAACATTGCCTTT+AGG 0.397252 7.1:+35513192 MS.gene94749:CDS
AAAGTTGTTTATGTAGAGGC+TGG 0.400881 7.1:+35513144 MS.gene94749:CDS
TCAACATATTTATAATAGAT+AGG 0.404479 7.1:-35514255 None:intergenic
TAACCAGACCTCCTCTTTCC+CGG 0.412402 7.1:+35514181 MS.gene94749:CDS
GAAGTTTGACTTCAAGGGTT+CGG 0.417488 7.1:-35513409 None:intergenic
CAGAAGAAGTTTGACTTCAA+GGG 0.429394 7.1:-35513414 None:intergenic
TAAAGATAAAGTCAGTCAAA+GGG 0.446934 7.1:-35513849 None:intergenic
AGTTATGTAACGGTAATATC+TGG 0.450579 7.1:-35514221 None:intergenic
CCCTTAATGACGTGGAAGAA+AGG 0.451121 7.1:+35514403 MS.gene94749:CDS
AAAACTCCCATAGATTTCTT+GGG 0.461452 7.1:-35513900 None:intergenic
GACTGACTTTATCTTTAAAA+GGG 0.464589 7.1:+35513855 MS.gene94749:CDS
CTGCCGGGAAAGAGGAGGTC+TGG 0.472647 7.1:-35514184 None:intergenic
CAGTGTTACATGTGCTTCAA+GGG 0.473386 7.1:+35514064 MS.gene94749:CDS
CTACTCAAGCCAAGAAACTC+GGG 0.477370 7.1:+35513345 MS.gene94749:CDS
TTAAAGATAAAGTCAGTCAA+AGG 0.488360 7.1:-35513850 None:intergenic
ACGTGGAAGAAAGGGTCATC+AGG 0.490313 7.1:+35514412 MS.gene94749:CDS
ACAACTTCGGCTTTGACAAA+CGG 0.491516 7.1:+35514594 MS.gene94749:CDS
GGTTCCTAATTCCATACTGC+CGG 0.491898 7.1:-35514200 None:intergenic
GTACATGACTTGGTTGAGTC+CGG 0.495962 7.1:+35514122 MS.gene94749:CDS
TTCATATTTAGAAAGAATGA+AGG 0.498825 7.1:+35514377 MS.gene94749:CDS
TGTTTATGTAGAGGCTGGGA+AGG 0.499987 7.1:+35513149 MS.gene94749:CDS
TAGAGGTCCAGTAACATTCA+TGG 0.501593 7.1:+35514308 MS.gene94749:CDS
GAAGAAAGTTGTTTATGTAG+AGG 0.504265 7.1:+35513140 MS.gene94749:CDS
GAGTTATGGTGGACAAAGAA+AGG 0.506158 7.1:+35513118 None:intergenic
AGACAATCCTTCTGATGAAA+TGG 0.507091 7.1:+35513936 MS.gene94749:CDS
GCTACTCAAGCCAAGAAACT+CGG 0.517391 7.1:+35513344 MS.gene94749:CDS
AAGTTGTTTATGTAGAGGCT+GGG 0.518284 7.1:+35513145 MS.gene94749:CDS
GGTCATCAGGATTGGTCGGA+AGG 0.519466 7.1:+35514425 MS.gene94749:CDS
TTCACAACCATTTCATCAGA+AGG 0.520257 7.1:-35513943 None:intergenic
ATTCATGGTGGCAGACGACT+TGG 0.520933 7.1:+35514323 MS.gene94749:CDS
TCTGTGACCATATATATTGT+TGG 0.521715 7.1:-35513308 None:intergenic
TTTAGACCCAAGAAATCTAT+GGG 0.526049 7.1:+35513894 MS.gene94749:CDS
CCTTAATGACGTGGAAGAAA+GGG 0.526797 7.1:+35514404 MS.gene94749:CDS
ATTCCATACTGCCGGGAAAG+AGG 0.532113 7.1:-35514192 None:intergenic
GAAGAAAGGGTCATCAGGAT+TGG 0.539346 7.1:+35514417 MS.gene94749:CDS
CTTTCTTCCACGTCATTAAG+GGG 0.544228 7.1:-35514402 None:intergenic
AGCTTCATTGACGACAACTT+CGG 0.548541 7.1:+35514581 MS.gene94749:CDS
TCTGACAATAAACATCTATC+CGG 0.552620 7.1:-35514141 None:intergenic
ATTTATATAAGTACATGACT+TGG 0.553155 7.1:+35514112 MS.gene94749:CDS
TATTGCACGACTCGTGGCTA+AGG 0.555083 7.1:+35513218 MS.gene94749:CDS
AGTAAATCCTCCTGAAATAG+GGG 0.565277 7.1:-35514286 None:intergenic
GTTCCTAATTCCATACTGCC+GGG 0.566535 7.1:-35514199 None:intergenic
TTACCGTTACATAACTACCT+TGG 0.569352 7.1:+35514228 MS.gene94749:CDS
GCGCCATAATGCAAAGGTTG+AGG 0.570536 7.1:-35514617 None:intergenic
AAAGGGTCATCAGGATTGGT+CGG 0.579181 7.1:+35514421 MS.gene94749:CDS
TCTTTCTAAATATGAAACAA+TGG 0.582034 7.1:-35514370 None:intergenic
AGTCGTGCAATAGTACCTAA+AGG 0.584213 7.1:-35513207 None:intergenic
AGGTACTATTGCACGACTCG+TGG 0.591324 7.1:+35513212 MS.gene94749:CDS
CATCAGGATTGGTCGGAAGG+AGG 0.604323 7.1:+35514428 MS.gene94749:CDS
ATTTCAGGAGGATTTACTAG+AGG 0.604666 7.1:+35514291 MS.gene94749:CDS
CCTAAATCCCCTATTTCAGG+AGG 0.607949 7.1:+35514279 MS.gene94749:CDS
TGAATTGCGCCATAATGCAA+AGG 0.608544 7.1:-35514623 None:intergenic
TTACCAAGGTAGTTATGTAA+CGG 0.643864 7.1:-35514231 None:intergenic
TACTCAAGCCAAGAAACTCG+GGG 0.647198 7.1:+35513346 MS.gene94749:CDS
TATAATAGATAGGATTACCA+AGG 0.651859 7.1:-35514245 None:intergenic
TTTCTTCCACGTCATTAAGG+GGG 0.652161 7.1:-35514401 None:intergenic
AAAGATAAAGTCAGTCAAAG+GGG 0.655613 7.1:-35513848 None:intergenic
CCATACTGCCGGGAAAGAGG+AGG 0.657000 7.1:-35514189 None:intergenic
ACAATGGAAATAGATGACAT+TGG 0.723202 7.1:-35514354 None:intergenic
AGGTCCAGTAACATTCATGG+TGG 0.740271 7.1:+35514311 MS.gene94749:CDS
ACTCAAGCCAAGAAACTCGG+GGG 0.752288 7.1:+35513347 MS.gene94749:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACATATTTATAATAGAT+AGG - chr7.1:35514258-35514277 None:intergenic 15.0%
!! AGTTTGTATACTCAAATTTA+GGG - chr7.1:35513535-35513554 None:intergenic 20.0%
!! ATTTATATAAGTACATGACT+TGG + chr7.1:35514112-35514131 MS.gene94749:CDS 20.0%
!! TCTTTCTAAATATGAAACAA+TGG - chr7.1:35514373-35514392 None:intergenic 20.0%
!! TTCATATTTAGAAAGAATGA+AGG + chr7.1:35514377-35514396 MS.gene94749:CDS 20.0%
! AATATGGAAGCAGTAAAATT+TGG + chr7.1:35513246-35513265 MS.gene94749:CDS 25.0%
! ATCTTGACCAACAATATATA+TGG + chr7.1:35513301-35513320 MS.gene94749:CDS 25.0%
! CAGTTTGTATACTCAAATTT+AGG - chr7.1:35513536-35513555 None:intergenic 25.0%
! CTAAATTTGAGTATACAAAC+TGG + chr7.1:35513534-35513553 MS.gene94749:intron 25.0%
! GTTTGTATACTCAAATTTAG+GGG - chr7.1:35513534-35513553 None:intergenic 25.0%
! TAAAGATAAAGTCAGTCAAA+GGG - chr7.1:35513852-35513871 None:intergenic 25.0%
! TATAATAGATAGGATTACCA+AGG - chr7.1:35514248-35514267 None:intergenic 25.0%
! TTAAAGATAAAGTCAGTCAA+AGG - chr7.1:35513853-35513872 None:intergenic 25.0%
!! CAATGTTCAGTTTCATATTT+TGG - chr7.1:35513383-35513402 None:intergenic 25.0%
!! CACAAACAAATACTGTTTTA+GGG - chr7.1:35514535-35514554 None:intergenic 25.0%
!! GACTGACTTTATCTTTAAAA+GGG + chr7.1:35513855-35513874 MS.gene94749:CDS 25.0%
!! TATTTTCAACTTTGCAATTC+TGG - chr7.1:35513446-35513465 None:intergenic 25.0%
!! TCACAAACAAATACTGTTTT+AGG - chr7.1:35514536-35514555 None:intergenic 25.0%
!! TGACTGACTTTATCTTTAAA+AGG + chr7.1:35513854-35513873 MS.gene94749:CDS 25.0%
AAAACTCCCATAGATTTCTT+GGG - chr7.1:35513903-35513922 None:intergenic 30.0%
AAAGATAAAGTCAGTCAAAG+GGG - chr7.1:35513851-35513870 None:intergenic 30.0%
ACAATGGAAATAGATGACAT+TGG - chr7.1:35514357-35514376 None:intergenic 30.0%
AGTTATGTAACGGTAATATC+TGG - chr7.1:35514224-35514243 None:intergenic 30.0%
ATTTAGACCCAAGAAATCTA+TGG + chr7.1:35513893-35513912 MS.gene94749:CDS 30.0%
CATCAAATCTTGGTATGAAT+AGG + chr7.1:35513789-35513808 MS.gene94749:intron 30.0%
CGCAATTCATGAATGAAAAA+AGG + chr7.1:35514637-35514656 MS.gene94749:CDS 30.0%
CTCTTTCTTGCTGATATTAA+CGG - chr7.1:35513688-35513707 None:intergenic 30.0%
GAAGAAAGTTGTTTATGTAG+AGG + chr7.1:35513140-35513159 MS.gene94749:CDS 30.0%
TAATCTCTGTCATCAAATCT+TGG + chr7.1:35513779-35513798 MS.gene94749:intron 30.0%
TAGTAAATCCTCCTGAAATA+GGG - chr7.1:35514290-35514309 None:intergenic 30.0%
TCTGACAATAAACATCTATC+CGG - chr7.1:35514144-35514163 None:intergenic 30.0%
TCTGTGACCATATATATTGT+TGG - chr7.1:35513311-35513330 None:intergenic 30.0%
TTACCAAGGTAGTTATGTAA+CGG - chr7.1:35514234-35514253 None:intergenic 30.0%
TTATATCTCGTTCAGAAGTA+TGG + chr7.1:35513630-35513649 MS.gene94749:intron 30.0%
TTTAGACCCAAGAAATCTAT+GGG + chr7.1:35513894-35513913 MS.gene94749:CDS 30.0%
! AAACTTGTTCCATCAACATT+CGG - chr7.1:35513612-35513631 None:intergenic 30.0%
! TATTTGTTTGTGATGATGCA+GGG + chr7.1:35514543-35514562 MS.gene94749:intron 30.0%
!! GATTTTGTTTGTTGAAGCAA+AGG + chr7.1:35513993-35514012 MS.gene94749:CDS 30.0%
!! TATACAAACTGGCTTTGTTA+AGG + chr7.1:35513545-35513564 MS.gene94749:intron 30.0%
!! TTAAACTTCACTTTGGAGTT+TGG + chr7.1:35514463-35514482 MS.gene94749:intron 30.0%
AAAGTTGTTTATGTAGAGGC+TGG + chr7.1:35513144-35513163 MS.gene94749:CDS 35.0%
AAGTTGTTTATGTAGAGGCT+GGG + chr7.1:35513145-35513164 MS.gene94749:CDS 35.0%
AGACAATCCTTCTGATGAAA+TGG + chr7.1:35513936-35513955 MS.gene94749:CDS 35.0%
AGCTTCTTAACATTGCCTTT+AGG + chr7.1:35513192-35513211 MS.gene94749:CDS 35.0%
AGTAAATCCTCCTGAAATAG+GGG - chr7.1:35514289-35514308 None:intergenic 35.0%
ATTTCAGGAGGATTTACTAG+AGG + chr7.1:35514291-35514310 MS.gene94749:CDS 35.0%
CAAAACTCCCATAGATTTCT+TGG - chr7.1:35513904-35513923 None:intergenic 35.0%
CACTGTGTTAAACTTCACTT+TGG + chr7.1:35514456-35514475 MS.gene94749:intron 35.0%
CGTTAATATCAGCAAGAAAG+AGG + chr7.1:35513686-35513705 MS.gene94749:intron 35.0%
CTAGTAAATCCTCCTGAAAT+AGG - chr7.1:35514291-35514310 None:intergenic 35.0%
TCAAATTTAGGGGAACTTCT+CGG - chr7.1:35513524-35513543 None:intergenic 35.0%
TTACCGTTACATAACTACCT+TGG + chr7.1:35514228-35514247 MS.gene94749:CDS 35.0%
TTCACAACCATTTCATCAGA+AGG - chr7.1:35513946-35513965 None:intergenic 35.0%
! ACAGAAGAAGTTTGACTTCA+AGG - chr7.1:35513418-35513437 None:intergenic 35.0%
! CAAGAAATCTATGGGAGTTT+TGG + chr7.1:35513902-35513921 MS.gene94749:CDS 35.0%
! CAGAAGAAGTTTGACTTCAA+GGG - chr7.1:35513417-35513436 None:intergenic 35.0%
! GTATTTGTTTGTGATGATGC+AGG + chr7.1:35514542-35514561 MS.gene94749:intron 35.0%
! TTTCAAGCTTTGCTCTTTTG+TGG - chr7.1:35514674-35514693 None:intergenic 35.0%
!!! AATCTATGGGAGTTTTGGAT+TGG + chr7.1:35513907-35513926 MS.gene94749:CDS 35.0%
AATGTGATGCCGAATGTTGA+TGG + chr7.1:35513600-35513619 MS.gene94749:intron 40.0%
AGCTTCATTGACGACAACTT+CGG + chr7.1:35514581-35514600 MS.gene94749:CDS 40.0%
AGTCGTGCAATAGTACCTAA+AGG - chr7.1:35513210-35513229 None:intergenic 40.0%
CAGTGTTACATGTGCTTCAA+GGG + chr7.1:35514064-35514083 MS.gene94749:CDS 40.0%
CCTTAATGACGTGGAAGAAA+GGG + chr7.1:35514404-35514423 MS.gene94749:CDS 40.0%
CCTTTCTTCCACGTCATTAA+GGG - chr7.1:35514406-35514425 None:intergenic 40.0%
CTTTCTTCCACGTCATTAAG+GGG - chr7.1:35514405-35514424 None:intergenic 40.0%
GATCCTAAATCCCCTATTTC+AGG + chr7.1:35514276-35514295 MS.gene94749:CDS 40.0%
TAGAGGTCCAGTAACATTCA+TGG + chr7.1:35514308-35514327 MS.gene94749:CDS 40.0%
TGAATTGCGCCATAATGCAA+AGG - chr7.1:35514626-35514645 None:intergenic 40.0%
TTTCTTCCACGTCATTAAGG+GGG - chr7.1:35514404-35514423 None:intergenic 40.0%
! ACAACTTCGGCTTTGACAAA+CGG + chr7.1:35514594-35514613 MS.gene94749:CDS 40.0%
! AGTTTTCTCACCATTCCCTT+GGG + chr7.1:35514039-35514058 MS.gene94749:CDS 40.0%
! GAAGTTTGACTTCAAGGGTT+CGG - chr7.1:35513412-35513431 None:intergenic 40.0%
! TAGTTTTCTCACCATTCCCT+TGG + chr7.1:35514038-35514057 MS.gene94749:CDS 40.0%
AGGTCCAGTAACATTCATGG+TGG + chr7.1:35514311-35514330 MS.gene94749:CDS 45.0%
CCCTTAATGACGTGGAAGAA+AGG + chr7.1:35514403-35514422 MS.gene94749:CDS 45.0%
CCCTTTCTTCCACGTCATTA+AGG - chr7.1:35514407-35514426 None:intergenic 45.0%
CCTAAATCCCCTATTTCAGG+AGG + chr7.1:35514279-35514298 MS.gene94749:CDS 45.0%
CCTCCTGAAATAGGGGATTT+AGG - chr7.1:35514282-35514301 None:intergenic 45.0%
CGTGGCTAAGGAGTCAAATA+TGG + chr7.1:35513230-35513249 MS.gene94749:CDS 45.0%
CTACTCAAGCCAAGAAACTC+GGG + chr7.1:35513345-35513364 MS.gene94749:CDS 45.0%
GAAGAAAGGGTCATCAGGAT+TGG + chr7.1:35514417-35514436 MS.gene94749:CDS 45.0%
GCAGTGTTACATGTGCTTCA+AGG + chr7.1:35514063-35514082 MS.gene94749:CDS 45.0%
GCTACTCAAGCCAAGAAACT+CGG + chr7.1:35513344-35513363 MS.gene94749:CDS 45.0%
GGTTCCTAATTCCATACTGC+CGG - chr7.1:35514203-35514222 None:intergenic 45.0%
GTTCCTAATTCCATACTGCC+GGG - chr7.1:35514202-35514221 None:intergenic 45.0%
TAATAAGCCCCCGAGTTTCT+TGG - chr7.1:35513357-35513376 None:intergenic 45.0%
TACTCAAGCCAAGAAACTCG+GGG + chr7.1:35513346-35513365 MS.gene94749:CDS 45.0%
TCTGCCACCATGAATGTTAC+TGG - chr7.1:35514318-35514337 None:intergenic 45.0%
TGTTTATGTAGAGGCTGGGA+AGG + chr7.1:35513149-35513168 MS.gene94749:CDS 45.0%
TTTCCCGGCAGTATGGAATT+AGG + chr7.1:35514196-35514215 MS.gene94749:CDS 45.0%
! AAAGGGTCATCAGGATTGGT+CGG + chr7.1:35514421-35514440 MS.gene94749:CDS 45.0%
! GTTTTCTCACCATTCCCTTG+GGG + chr7.1:35514040-35514059 MS.gene94749:CDS 45.0%
! TTTTCTCACCATTCCCTTGG+GGG + chr7.1:35514041-35514060 MS.gene94749:CDS 45.0%
!! GTACATGACTTGGTTGAGTC+CGG + chr7.1:35514122-35514141 MS.gene94749:CDS 45.0%
ACATGTAACACTGCCCCCAA+GGG - chr7.1:35514057-35514076 None:intergenic 50.0%
ACGTGGAAGAAAGGGTCATC+AGG + chr7.1:35514412-35514431 MS.gene94749:CDS 50.0%
ACTCAAGCCAAGAAACTCGG+GGG + chr7.1:35513347-35513366 MS.gene94749:CDS 50.0%
AGGGGAACTTCTCGGTTCAA+TGG - chr7.1:35513516-35513535 None:intergenic 50.0%
AGGTACTATTGCACGACTCG+TGG + chr7.1:35513212-35513231 MS.gene94749:CDS 50.0%
ATTCATGGTGGCAGACGACT+TGG + chr7.1:35514323-35514342 MS.gene94749:CDS 50.0%
ATTCCATACTGCCGGGAAAG+AGG - chr7.1:35514195-35514214 None:intergenic 50.0%
CGGCCTCAACCTTTGCATTA+TGG + chr7.1:35514614-35514633 MS.gene94749:CDS 50.0%
GCGCCATAATGCAAAGGTTG+AGG - chr7.1:35514620-35514639 None:intergenic 50.0%
TAACCAGACCTCCTCTTTCC+CGG + chr7.1:35514181-35514200 MS.gene94749:CDS 50.0%
TATTGCACGACTCGTGGCTA+AGG + chr7.1:35513218-35513237 MS.gene94749:CDS 50.0%
CACATGTAACACTGCCCCCA+AGG - chr7.1:35514058-35514077 None:intergenic 55.0%
GAAGGTCCCCCTTAATGACG+TGG + chr7.1:35514395-35514414 MS.gene94749:CDS 55.0%
TAACACTGCCCCCAAGGGAA+TGG - chr7.1:35514052-35514071 None:intergenic 55.0%
!! CATCAGGATTGGTCGGAAGG+AGG + chr7.1:35514428-35514447 MS.gene94749:CDS 55.0%
!! GGATTGGTCGGAAGGAGGTA+AGG + chr7.1:35514433-35514452 MS.gene94749:intron 55.0%
!! GGTCATCAGGATTGGTCGGA+AGG + chr7.1:35514425-35514444 MS.gene94749:CDS 55.0%
CCATACTGCCGGGAAAGAGG+AGG - chr7.1:35514192-35514211 None:intergenic 60.0%
CCTCCTCTTTCCCGGCAGTA+TGG + chr7.1:35514189-35514208 MS.gene94749:CDS 60.0%
CTGCCGGGAAAGAGGAGGTC+TGG - chr7.1:35514187-35514206 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 35513123 35514701 35513123 ID=MS.gene94749
chr7.1 mRNA 35513123 35514701 35513123 ID=MS.gene94749.t1;Parent=MS.gene94749
chr7.1 exon 35513123 35513473 35513123 ID=MS.gene94749.t1.exon1;Parent=MS.gene94749.t1
chr7.1 CDS 35513123 35513473 35513123 ID=cds.MS.gene94749.t1;Parent=MS.gene94749.t1
chr7.1 exon 35513811 35514449 35513811 ID=MS.gene94749.t1.exon2;Parent=MS.gene94749.t1
chr7.1 CDS 35513811 35514449 35513811 ID=cds.MS.gene94749.t1;Parent=MS.gene94749.t1
chr7.1 exon 35514564 35514701 35514564 ID=MS.gene94749.t1.exon3;Parent=MS.gene94749.t1
chr7.1 CDS 35514564 35514701 35514564 ID=cds.MS.gene94749.t1;Parent=MS.gene94749.t1
Gene Sequence

>MS.gene94749

ATGGTGGACAAAGAAAGGAAGAAAGTTGTTTATGTAGAGGCTGGGAAGGATTTTGTTGATGTTCTCTTCAGCTTCTTAACATTGCCTTTAGGTACTATTGCACGACTCGTGGCTAAGGAGTCAAATATGGAAGCAGTAAAATTTGGCAGCATTAGCTCACTCTATCAAAGTGTTTCAGATCTTGACCAACAATATATATGGTCACAGACATGCAAAGAAATGCTACTCAAGCCAAGAAACTCGGGGGCTTATTATATCCAAAATATGAAACTGAACATTGATGACACCGAACCCTTGAAGTCAAACTTCTTCTGTGAGAACCAGAATTGCAAAGTTGAAAATAACTGCTGTGTGAGTTTCTACAGAAATCAAACATGTATTTGTCGAAAGCCATTGAACCGAGAAGTTCCCCTAAATTTGAGTATACAAACTGGCTTTGTTAAGGAAAATTTGACTTTTATTGTTTCTGACGATCTTAATGTGATGCCGAATGTTGATGGAACAAGTTTATATCTCGTTCAGAAGTATGGAATCAAAGACATTGATGCTATTGATATACAAACCGTTAATATCAGCAAGAAAGAGGCATGTTTTCTATGTTTATATGTCATCTTTTCTGTTTATAGTAACTATATTGTTTTCTGTCATTAATTCTCTAATCTCTGTCATCAAATCTTGGTATGAATAGGTAGTAGATATTCTCAAGTTGATTTTGATATCAAAGACCCCTTTGACTGACTTTATCTTTAAAAGGGAGCAATCTGTTGTTAATTTAGACCCAAGAAATCTATGGGAGTTTTGGATTGGAGATGTAGACAATCCTTCTGATGAAATGGTTGTGAAAGTATTAAGAAGAAAATCAACTGCACAGATTTTGTTTGTTGAAGCAAAGGAAGATTTTGCTGACTTTGTCTTTAGTTTTCTCACCATTCCCTTGGGGGCAGTGTTACATGTGCTTCAAGGGTTCTCTTTTTTAAGCTGCATTGATAATTTATATAAGTACATGACTTGGTTGAGTCCGGATAGATGTTTATTGTCAGAAGAAGTCAAAGATAAACTAACCAGACCTCCTCTTTCCCGGCAGTATGGAATTAGGAACCAGATATTACCGTTACATAACTACCTTGGTAATCCTATCTATTATAAATATGTTGATCCTAAATCCCCTATTTCAGGAGGATTTACTAGAGGTCCAGTAACATTCATGGTGGCAGACGACTTGGTTGTGACACCAATGTCATCTATTTCCATTGTTTCATATTTAGAAAGAATGAAGGTCCCCCTTAATGACGTGGAAGAAAGGGTCATCAGGATTGGTCGGAAGGAGGTAAGGCACTGTGTTAAACTTCACTTTGGAGTTTGGAAACACTTACTTCATAGTTACATCTTAATATTACTTGTATACGATTCCCTAAAACAGTATTTGTTTGTGATGATGCAGGGTCTCAGCATATTGAAAGCTTCATTGACGACAACTTCGGCTTTGACAAACGGCCTCAACCTTTGCATTATGGCGCAATTCATGAATGAAAAAAGGTCTCAGTCTAGCCACAAAAGAGCAAAGCTTGAAAGAACATAA
Protein sequence

>MS.gene94749.t1

MVDKERKKVVYVEAGKDFVDVLFSFLTLPLGTIARLVAKESNMEAVKFGSISSLYQSVSDLDQQYIWSQTCKEMLLKPRNSGAYYIQNMKLNIDDTEPLKSNFFCENQNCKVENNCCVVDILKLILISKTPLTDFIFKREQSVVNLDPRNLWEFWIGDVDNPSDEMVVKVLRRKSTAQILFVEAKEDFADFVFSFLTIPLGAVLHVLQGFSFLSCIDNLYKYMTWLSPDRCLLSEEVKDKLTRPPLSRQYGIRNQILPLHNYLGNPIYYKYVDPKSPISGGFTRGPVTFMVADDLVVTPMSSISIVSYLERMKVPLNDVEERVIRIGRKEGLSILKASLTTTSALTNGLNLCIMAQFMNEKRSQSSHKRAKLERT