AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45956

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45956.t1 MTR_7g066570 87.348 577 29 2 1 540 1 570 0.0 999
MS.gene45956.t1 MTR_7g012680 65.244 492 92 4 1 455 1 450 0.0 593
MS.gene45956.t1 MTR_7g058710 53.892 501 164 8 1 454 1 481 4.22e-170 490
MS.gene45956.t1 MTR_7g066260 53.801 513 160 8 6 474 7 486 1.71e-159 464
MS.gene45956.t1 MTR_7g066340 54.000 500 155 9 5 463 3 468 4.49e-156 454
MS.gene45956.t1 MTR_7g066350 54.812 478 140 7 10 447 5 446 1.97e-150 439
MS.gene45956.t1 MTR_7g066580 54.867 452 176 7 20 452 1 443 3.05e-149 436
MS.gene45956.t1 MTR_1g041315 51.546 485 150 7 1 434 1 451 5.22e-146 429
MS.gene45956.t1 MTR_2g029400 53.034 445 164 8 1 440 1 405 1.52e-138 407
MS.gene45956.t1 MTR_7g066400 49.573 468 163 8 10 446 8 433 3.11e-134 397
MS.gene45956.t1 MTR_7g066290 49.898 491 144 10 2 450 3 433 9.18e-128 380
MS.gene45956.t1 MTR_7g066360 47.419 523 192 9 1 482 1 481 3.71e-126 378
MS.gene45956.t1 MTR_7g066310 50.323 465 149 11 11 463 4 398 1.24e-124 371
MS.gene45956.t1 MTR_7g066310 30.256 195 121 4 10 195 189 377 4.73e-12 68.2
MS.gene45956.t1 MTR_7g066430 42.857 497 220 6 15 457 5 491 4.49e-123 371
MS.gene45956.t1 MTR_7g058700 44.215 484 126 8 26 454 531 925 1.30e-113 358
MS.gene45956.t1 MTR_7g066410 39.921 506 232 9 14 450 10 512 5.55e-106 327
MS.gene45956.t1 MTR_7g062280 38.922 501 227 8 13 454 9 489 1.23e-104 323
MS.gene45956.t1 MTR_7g062280 29.956 227 113 5 9 195 259 479 3.04e-15 78.6
MS.gene45956.t1 MTR_7g063920 41.485 458 240 8 1 454 1 434 9.15e-104 319
MS.gene45956.t1 MTR_7g062300 38.788 495 234 10 1 449 1 472 2.34e-102 317
MS.gene45956.t1 MTR_7g063820 40.283 494 237 9 6 454 2 482 3.09e-100 311
MS.gene45956.t1 MTR_7g063840 39.592 490 241 11 1 454 1 471 3.70e-100 311
MS.gene45956.t1 MTR_7g063880 41.141 491 227 14 1 454 1 466 4.93e-100 310
MS.gene45956.t1 MTR_7g063900 40.083 484 238 8 15 454 11 486 5.99e-98 306
MS.gene45956.t1 MTR_7g063890 41.420 507 228 11 2 454 11 502 6.95e-96 301
MS.gene45956.t1 MTR_7g063660 38.174 482 244 8 13 454 8 475 2.68e-95 298
MS.gene45956.t1 MTR_7g066680 53.115 305 102 3 178 447 37 335 1.55e-90 281
MS.gene45956.t1 MTR_3g007740 39.014 487 215 10 1 450 1 442 1.15e-88 280
MS.gene45956.t1 MTR_7g063670 36.290 496 230 11 1 454 4 455 3.19e-86 274
MS.gene45956.t1 MTR_7g063830 37.474 483 218 11 6 450 2 438 2.14e-85 271
MS.gene45956.t1 MTR_3g065200 38.043 460 193 10 15 437 4 408 2.21e-83 267
MS.gene45956.t1 MTR_7g066490 38.819 474 173 9 15 452 17 409 3.45e-82 262
MS.gene45956.t1 MTR_4g019310 35.412 497 241 13 17 450 11 490 1.04e-81 264
MS.gene45956.t1 MTR_7g066480 37.342 474 198 10 13 452 15 423 4.23e-80 257
MS.gene45956.t1 MTR_7g066280 40.559 429 173 12 93 463 1 405 3.79e-76 246
MS.gene45956.t1 MTR_4g017830 34.980 506 252 13 6 446 4 497 7.02e-74 244
MS.gene45956.t1 MTR_4g017610 35.174 489 255 14 5 447 4 476 3.78e-71 235
MS.gene45956.t1 MTR_4g017610 29.119 261 124 11 223 448 9 243 4.85e-13 71.6
MS.gene45956.t1 MTR_4g019340 35.565 478 239 10 15 438 39 501 1.15e-69 232
MS.gene45956.t1 MTR_4g017470 34.387 506 282 14 1 473 1 489 1.40e-68 229
MS.gene45956.t1 MTR_4g017440 33.528 513 277 12 1 455 1 507 3.50e-68 228
MS.gene45956.t1 MTR_1g014060 50.877 228 73 3 23 213 9 234 2.23e-64 215
MS.gene45956.t1 MTR_1g014060 56.731 208 68 3 249 455 203 389 2.17e-61 207
MS.gene45956.t1 MTR_1g014060 26.442 208 133 6 239 436 12 209 1.45e-11 66.6
MS.gene45956.t1 MTR_4g017410 32.252 524 268 17 8 468 3 502 1.37e-60 208
MS.gene45956.t1 MTR_7g063720 41.304 230 111 4 227 454 23 230 6.00e-47 164
MS.gene45956.t1 MTR_7g063720 26.961 204 115 8 17 195 26 220 1.38e-13 70.9
MS.gene45956.t1 MTR_4g017550 31.020 461 254 15 41 446 18 469 4.99e-46 168
MS.gene45956.t1 MTR_2g067310 53.901 141 51 3 26 161 59 190 8.36e-35 131
MS.gene45956.t1 MTR_7g062270 41.209 182 68 3 1 147 1 178 9.41e-33 129
MS.gene45956.t1 MTR_8g023240 26.761 497 294 16 15 468 38 507 6.53e-32 130
MS.gene45956.t1 MTR_7g063850 30.968 310 181 8 151 454 4 286 1.18e-31 124
MS.gene45956.t1 MTR_7g063690 36.641 262 118 11 1 254 1 222 4.57e-30 118
MS.gene45956.t1 MTR_7g100420 32.602 319 192 8 131 446 95 393 1.67e-28 117
MS.gene45956.t1 MTR_7g100420 53.086 81 32 2 15 89 40 120 9.97e-14 73.6
MS.gene45956.t1 MTR_7g066390 49.587 121 51 2 348 459 12 131 3.12e-24 99.4
MS.gene45956.t1 MTR_8g445860 32.159 227 134 7 228 443 14 231 2.19e-23 99.4
MS.gene45956.t1 MTR_8g445860 29.694 229 113 6 15 200 14 237 1.96e-19 88.2
MS.gene45956.t1 MTR_1g115440 31.933 238 137 9 221 443 5 232 1.65e-22 97.1
MS.gene45956.t1 MTR_1g115440 29.268 246 120 5 1 200 1 238 2.22e-19 87.8
MS.gene45956.t1 MTR_0150s0010 30.962 239 138 7 221 443 4 231 1.59e-21 94.0
MS.gene45956.t1 MTR_0150s0010 27.801 241 123 5 6 200 2 237 1.45e-18 85.5
MS.gene45956.t1 MTR_4g019240 40.870 115 58 4 10 116 9 121 3.58e-17 80.1
MS.gene45956.t1 MTR_7g063760 50.704 71 34 1 385 454 1 71 4.96e-17 76.3
MS.gene45956.t1 MTR_1g115455 27.632 228 118 4 15 200 10 232 2.66e-16 79.0
MS.gene45956.t1 MTR_7g063870 31.214 173 72 5 8 179 25 151 6.80e-16 78.2
MS.gene45956.t1 MTR_1g115450 39.286 84 46 1 15 98 8 86 3.41e-14 70.1
MS.gene45956.t1 MTR_1g115470 38.298 94 51 2 17 108 9 97 1.05e-11 67.4
MS.gene45956.t1 MTR_0150s0030 39.024 82 44 2 17 97 11 87 2.78e-11 63.5
MS.gene45956.t1 MTR_8g445920 35.165 91 54 1 6 96 2 87 3.26e-11 60.8
MS.gene45956.t1 MTR_8g044890 35.165 91 54 1 6 96 2 87 3.26e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45956.t1 AT5G01120 31.417 487 268 9 15 446 10 485 6.43e-63 214
MS.gene45956.t1 AT5G43240 30.081 492 272 7 15 446 10 489 7.73e-60 206
MS.gene45956.t1 AT5G43240 30.081 492 272 7 15 446 10 489 7.73e-60 206
MS.gene45956.t1 AT5G43240 30.081 492 272 7 15 446 10 489 7.73e-60 206
MS.gene45956.t1 AT3G09140 31.275 502 257 11 17 450 12 493 2.47e-54 191
MS.gene45956.t1 AT5G01150 31.590 478 273 8 17 450 12 479 1.22e-53 189
MS.gene45956.t1 AT5G01150 24.627 268 173 9 222 470 4 261 1.50e-11 67.4
MS.gene45956.t1 AT5G01130 31.513 476 262 8 6 450 2 444 1.73e-51 182
MS.gene45956.t1 AT5G01140 30.544 478 250 10 17 450 12 451 3.29e-50 179
MS.gene45956.t1 AT5G01140 26.667 210 118 6 15 194 241 444 6.38e-12 68.2
MS.gene45956.t1 AT3G09110 34.084 311 164 5 17 289 12 319 1.18e-48 172
MS.gene45956.t1 AT3G09140 29.623 530 257 12 17 450 12 521 1.66e-48 176
MS.gene45956.t1 AT5G37320 26.761 497 262 15 21 450 18 479 2.37e-37 144
MS.gene45956.t1 AT3G09120 32.082 293 153 4 13 262 5 294 6.32e-37 139
MS.gene45956.t1 AT3G09120 27.556 225 153 6 228 444 7 229 1.11e-12 69.7
MS.gene45956.t1 AT5G43240 29.003 331 209 5 130 446 27 345 9.94e-30 120

Find 86 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTGAAGCAGTGAAATT+TGG 0.215494 7.2:-44907865 MS.gene45956:CDS
GCTTCTTAACGTTGCCTTTA+GGG 0.252283 7.2:-44907918 MS.gene45956:CDS
TTGGGATCAACCACTTTAAA+TGG 0.256099 7.2:+44906746 None:intergenic
GAGGAAAGAGTTATCAAAAT+TGG 0.271117 7.2:-44906587 MS.gene45956:CDS
AGCTTCTTAACGTTGCCTTT+AGG 0.324562 7.2:-44907919 MS.gene45956:CDS
AAAAGTCCCTCTATCTGATT+TGG 0.327730 7.2:-44906609 MS.gene45956:CDS
TAATCTTCCATCGAGTTTCT+TGG 0.330298 7.2:+44907757 None:intergenic
TTCAACTGATTCACTTTGAA+TGG 0.341437 7.2:+44908038 None:intergenic
CAAAGGACCGTCAATGTATA+TGG 0.358286 7.2:-44906696 MS.gene45956:CDS
GACAATATCGAGTTTCTGAT+TGG 0.360906 7.2:-44907205 MS.gene45956:CDS
CAAATTCTGTTTGTTGAAGC+AGG 0.376623 7.2:-44907118 MS.gene45956:CDS
CCAAGAGTTACTTTGGTTGA+AGG 0.378472 7.2:-44906142 MS.gene45956:CDS
AGTACTTTGTGTGCGAGAAT+TGG 0.385273 7.2:-44907690 MS.gene45956:CDS
AAGTTTGAGTGTTCAGCTTC+CGG 0.386054 7.2:-44906197 MS.gene45956:CDS
CATATACATTGACGGTCCTT+TGG 0.391870 7.2:+44906697 None:intergenic
TCAACTTCTGCTTTGACAAA+TGG 0.395017 7.2:-44906453 MS.gene45956:CDS
GGCAAGAAAGCCGCCCCAAT+TGG 0.397639 7.2:+44906878 None:intergenic
GAATCTAACTTTGAGGCATT+AGG 0.398906 7.2:-44906235 MS.gene45956:CDS
TTAAATCTACTTCAAAAGCT+TGG 0.402949 7.2:-44907478 MS.gene45956:CDS
TAATGTTCGTCTGAGAGTTT+TGG 0.408151 7.2:-44908007 MS.gene45956:CDS
TAGAAGTGACATAGTAGAAA+TGG 0.408251 7.2:+44906640 None:intergenic
GTAAAATAAAATCGGTCAAA+GGG 0.412435 7.2:+44907263 None:intergenic
AGAAGCAGATATTACCAATT+GGG 0.418884 7.2:-44906892 MS.gene45956:CDS
AAGAAGCAGATATTACCAAT+TGG 0.425279 7.2:-44906893 MS.gene45956:CDS
AGGGACTATTGCAAGATTTG+TGG 0.426435 7.2:-44907899 MS.gene45956:CDS
GTCTATCCTCATCAGATGTT+AGG 0.428311 7.2:+44907179 None:intergenic
GCAGCTTCCAAGAGTTACTT+TGG 0.428963 7.2:-44906149 MS.gene45956:CDS
CCAACTTATAAGAACTGTTA+AGG 0.435258 7.2:-44906424 MS.gene45956:intron
GCTCTTCCGTAAAATAAAAT+CGG 0.437259 7.2:+44907255 None:intergenic
GCTTCTTGAGTTCAAATTGT+GGG 0.441056 7.2:+44906909 None:intergenic
GATTCAAATTATCAACAGAT+TGG 0.441439 7.2:+44907233 None:intergenic
TACCGACCTTACAAAAGAAA+TGG 0.444335 7.2:-44906810 MS.gene45956:CDS
CCTTCAACCAAAGTAACTCT+TGG 0.447869 7.2:+44906142 None:intergenic
GTACTTTGTGTGCGAGAATT+GGG 0.451994 7.2:-44907689 MS.gene45956:CDS
TCTGGTGTAGCCCTACCTTC+AGG 0.452773 7.2:+44906256 None:intergenic
CCTTAACAGTTCTTATAAGT+TGG 0.452876 7.2:+44906424 None:intergenic
CTTTCCTCCAAATCAGATAG+AGG 0.456538 7.2:+44906602 None:intergenic
AATGCCTCAAAGTTAGATTC+TGG 0.460370 7.2:+44906238 None:intergenic
CCTACCTTCAGGAGCAGAAA+AGG 0.462381 7.2:+44906267 None:intergenic
TCTGACATTAAATATATGTC+TGG 0.473031 7.2:+44906968 None:intergenic
AGTCCCTCTATCTGATTTGG+AGG 0.478155 7.2:-44906606 MS.gene45956:CDS
CATATGCAACACTCCTCCTA+AGG 0.479612 7.2:+44907054 None:intergenic
AAAGTATGTACCATTTAAAG+TGG 0.485460 7.2:-44906756 MS.gene45956:CDS
GGAGTGTTGCATATGCTTCA+AGG 0.493604 7.2:-44907046 MS.gene45956:CDS
CGTAAAATAAAATCGGTCAA+AGG 0.508363 7.2:+44907262 None:intergenic
TTTCTAACCTTCCCCTTAGG+AGG 0.508980 7.2:-44907067 MS.gene45956:CDS
CTATATTCAGTTTCAGCTGT+CGG 0.517216 7.2:+44907731 None:intergenic
TACACCAGAATCTAACTTTG+AGG 0.519844 7.2:-44906242 MS.gene45956:CDS
AAAGTTGTGTATGCTGAGGC+TGG 0.521774 7.2:-44907967 MS.gene45956:CDS
TGCTTCTTGAGTTCAAATTG+TGG 0.528464 7.2:+44906908 None:intergenic
TTTGTGCTCACTTACTTGCA+AGG 0.529997 7.2:-44907794 MS.gene45956:CDS
CAGCTTCCGGATTGTTCAAG+TGG 0.532191 7.2:-44906184 MS.gene45956:CDS
CTTCTTGAGTTCAAATTGTG+GGG 0.540117 7.2:+44906910 None:intergenic
AATCTTGCAATAGTCCCTAA+AGG 0.549076 7.2:+44907904 None:intergenic
GATCTTCGCAAAGCCAATGC+AGG 0.551154 7.2:+44905455 None:intergenic
ATATGCAACACTCCTCCTAA+GGG 0.551461 7.2:+44907055 None:intergenic
GAATTGGGATTGTAGAAGAA+AGG 0.552800 7.2:-44907674 MS.gene45956:intron
TATTGCAAGATTTGTGGCTA+AGG 0.554119 7.2:-44907893 MS.gene45956:CDS
TCTGCCACCATATACATTGA+CGG 0.555890 7.2:+44906689 None:intergenic
TGTTGACATCAACAAGAAAG+AGG 0.557623 7.2:-44907422 MS.gene45956:intron
TAAGTATGACAATAATTCAC+AGG 0.558058 7.2:+44906857 None:intergenic
AGTTATCAAAATTGGTGTCA+AGG 0.562229 7.2:-44906579 MS.gene45956:CDS
AGACATATATTTAATGTCAG+AGG 0.566609 7.2:-44906966 MS.gene45956:CDS
AGAGAACAAGACTCCTGCAT+TGG 0.566936 7.2:-44905468 MS.gene45956:CDS
TGAGTACCACTTGAACAATC+CGG 0.569795 7.2:+44906178 None:intergenic
GACATATATTTAATGTCAGA+GGG 0.576897 7.2:-44906965 MS.gene45956:CDS
TCAAATTGTGGGGCAATGAG+AGG 0.582423 7.2:+44906920 None:intergenic
TGGCTTTGCGAAGATCAACT+AGG 0.584230 7.2:-44905448 MS.gene45956:CDS
GAAGCAGATATTACCAATTG+GGG 0.591287 7.2:-44906891 MS.gene45956:CDS
CGAGACTACTGATGCTATCG+AGG 0.593245 7.2:-44907452 MS.gene45956:CDS
CAACACTCCTCCTAAGGGGA+AGG 0.595804 7.2:+44907060 None:intergenic
ATAGTAGAAATGGACGACAT+TGG 0.606118 7.2:+44906650 None:intergenic
GCAAAATCATCATATGCCAA+AGG 0.610317 7.2:-44906713 MS.gene45956:CDS
ACTATGATTACACAAGAATG+AGG 0.612105 7.2:-44906835 MS.gene45956:CDS
TGTGTATGCTGAGGCTGGGA+AGG 0.614514 7.2:-44907962 MS.gene45956:CDS
TTTCCTCCAAATCAGATAGA+GGG 0.619397 7.2:+44906603 None:intergenic
TGGAGACCTAACATCTGATG+AGG 0.620523 7.2:-44907185 MS.gene45956:CDS
ACTGCAACCAAGAAACTCGA+TGG 0.632078 7.2:-44907764 MS.gene45956:CDS
GCAGATATTACCAATTGGGG+CGG 0.635000 7.2:-44906888 MS.gene45956:CDS
TAAAATAAAATCGGTCAAAG+GGG 0.636441 7.2:+44907264 None:intergenic
AAGTTGTGTATGCTGAGGCT+GGG 0.646725 7.2:-44907966 MS.gene45956:CDS
ATTTGTCAAAGCAGAAGTTG+AGG 0.649252 7.2:+44906455 None:intergenic
AGGACCGTCAATGTATATGG+TGG 0.673697 7.2:-44906693 MS.gene45956:CDS
TATCAAAATTGGTGTCAAGG+AGG 0.687473 7.2:-44906576 MS.gene45956:intron
TATGCAACACTCCTCCTAAG+GGG 0.688986 7.2:+44907056 None:intergenic
CAACAAAGTTGTGTATGCTG+AGG 0.740571 7.2:-44907971 MS.gene45956:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAATATGATTAACAATAT+AGG - chr7.2:44907843-44907862 MS.gene45956:CDS 10.0%
!! AAAGAAATGAAAAATAGTTT+AGG + chr7.2:44907544-44907563 None:intergenic 15.0%
!! TTTCTATATTGAAAAACTTT+GGG + chr7.2:44905891-44905910 None:intergenic 15.0%
!!! AAGTTTTTCAATATAGAAAA+TGG - chr7.2:44905892-44905911 MS.gene45956:intron 15.0%
!!! TTTTCTATATTGAAAAACTT+TGG + chr7.2:44905892-44905911 None:intergenic 15.0%
!! ATATATAAAGTGTGAAGTAA+AGG + chr7.2:44907688-44907707 None:intergenic 20.0%
!! ATTTCTTAATTCGATTGTAT+AGG - chr7.2:44906143-44906162 MS.gene45956:CDS 20.0%
!! GATGATATATATAATGTAGA+TGG + chr7.2:44906092-44906111 None:intergenic 20.0%
!!! ACTATTTTTCATTTCTTTCA+TGG - chr7.2:44907546-44907565 MS.gene45956:intron 20.0%
!!! TCATTATGTTTTTTGAGATT+AGG - chr7.2:44907579-44907598 MS.gene45956:intron 20.0%
! AAAGTATGTACCATTTAAAG+TGG - chr7.2:44906710-44906729 MS.gene45956:CDS 25.0%
! AATATTGAAGCAGTGAAATT+TGG - chr7.2:44905601-44905620 MS.gene45956:intron 25.0%
! AGACATATATTTAATGTCAG+AGG - chr7.2:44906500-44906519 MS.gene45956:intron 25.0%
! AGAGTAATCTAAACTTGATA+AGG + chr7.2:44907090-44907109 None:intergenic 25.0%
! GACATATATTTAATGTCAGA+GGG - chr7.2:44906501-44906520 MS.gene45956:intron 25.0%
! GATTCAAATTATCAACAGAT+TGG + chr7.2:44906236-44906255 None:intergenic 25.0%
! GTAAAATAAAATCGGTCAAA+GGG + chr7.2:44906206-44906225 None:intergenic 25.0%
! TAAAATAAAATCGGTCAAAG+GGG + chr7.2:44906205-44906224 None:intergenic 25.0%
! TAAGTATGACAATAATTCAC+AGG + chr7.2:44906612-44906631 None:intergenic 25.0%
! TCTGACATTAAATATATGTC+TGG + chr7.2:44906501-44906520 None:intergenic 25.0%
! TTAAATCTACTTCAAAAGCT+TGG - chr7.2:44905988-44906007 MS.gene45956:intron 25.0%
! TTTGACATATATCCACATAT+TGG + chr7.2:44907501-44907520 None:intergenic 25.0%
!! AATACACCATTTCTTTTGTA+AGG + chr7.2:44906665-44906684 None:intergenic 25.0%
!! AATAGTGATACCTGTATTTT+AGG + chr7.2:44907363-44907382 None:intergenic 25.0%
!! ATAGTGATACCTGTATTTTA+GGG + chr7.2:44907362-44907381 None:intergenic 25.0%
!! ATTACTCTTTTCTCCATAAT+AGG - chr7.2:44907102-44907121 MS.gene45956:CDS 25.0%
!! TACTTTTGGTACATATTACA+GGG - chr7.2:44906962-44906981 MS.gene45956:CDS 25.0%
!! TGTCAGTATCTATATCTTTT+TGG - chr7.2:44907937-44907956 MS.gene45956:CDS 25.0%
!! TTACTCTTTTCTCCATAATA+GGG - chr7.2:44907103-44907122 MS.gene45956:CDS 25.0%
!!! AAAAAGTTTAGTTTGTGACT+TGG - chr7.2:44907464-44907483 MS.gene45956:CDS 25.0%
!!! CTTTGACCGATTTTATTTTA+CGG - chr7.2:44906205-44906224 MS.gene45956:CDS 25.0%
!!! TATAGAAAATGGTTTTGTGA+AGG - chr7.2:44905903-44905922 MS.gene45956:intron 25.0%
!!! TATCTATATCTTTTTGGAAG+AGG - chr7.2:44907943-44907962 MS.gene45956:CDS 25.0%
!!! TTACTTTTGGTACATATTAC+AGG - chr7.2:44906961-44906980 MS.gene45956:CDS 25.0%
!!! TTTTTTGCAATATTGATGTG+TGG + chr7.2:44907449-44907468 None:intergenic 25.0%
AAGAAGCAGATATTACCAAT+TGG - chr7.2:44906573-44906592 MS.gene45956:intron 30.0%
ACTATGATTACACAAGAATG+AGG - chr7.2:44906631-44906650 MS.gene45956:CDS 30.0%
ACTTATAAGAACTGTTAAGG+TGG - chr7.2:44907045-44907064 MS.gene45956:CDS 30.0%
AGAAGCAGATATTACCAATT+GGG - chr7.2:44906574-44906593 MS.gene45956:intron 30.0%
CCAACTTATAAGAACTGTTA+AGG - chr7.2:44907042-44907061 MS.gene45956:CDS 30.0%
CCTTAACAGTTCTTATAAGT+TGG + chr7.2:44907045-44907064 None:intergenic 30.0%
CGTAAAATAAAATCGGTCAA+AGG + chr7.2:44906207-44906226 None:intergenic 30.0%
GAGGAAAGAGTTATCAAAAT+TGG - chr7.2:44906879-44906898 MS.gene45956:CDS 30.0%
GCTCTTCCGTAAAATAAAAT+CGG + chr7.2:44906214-44906233 None:intergenic 30.0%
GTACATAATACTCCAATATG+TGG - chr7.2:44907486-44907505 MS.gene45956:CDS 30.0%
TAGAAGTGACATAGTAGAAA+TGG + chr7.2:44906829-44906848 None:intergenic 30.0%
TCTTCATGTCTTACATGTAT+CGG - chr7.2:44907606-44907625 MS.gene45956:intron 30.0%
! AAACTTGCTCCAAAAACATT+AGG + chr7.2:44905970-44905989 None:intergenic 30.0%
! ACAAGCTTTTGTTGATCATA+CGG - chr7.2:44907155-44907174 MS.gene45956:CDS 30.0%
! ATGATCAACAAAAGCTTGTT+AGG + chr7.2:44907154-44907173 None:intergenic 30.0%
! GAACCAAATTCTCTTTTTGA+TGG - chr7.2:44907421-44907440 MS.gene45956:intron 30.0%
! GATTTTGCATTAGAAGACTT+GGG + chr7.2:44906741-44906760 None:intergenic 30.0%
! TACACTGGTATTTTCAATTC+AGG - chr7.2:44907971-44907990 MS.gene45956:CDS 30.0%
! TGATTTTGCATTAGAAGACT+TGG + chr7.2:44906742-44906761 None:intergenic 30.0%
! TGTGTTTTGCCTAATGTTTT+TGG - chr7.2:44905958-44905977 MS.gene45956:intron 30.0%
! TTCAACTGATTCACTTTGAA+TGG + chr7.2:44905431-44905450 None:intergenic 30.0%
!! AGTTATCAAAATTGGTGTCA+AGG - chr7.2:44906887-44906906 MS.gene45956:CDS 30.0%
!! TAGTGATACCTGTATTTTAG+GGG + chr7.2:44907361-44907380 None:intergenic 30.0%
AAAAGTCCCTCTATCTGATT+TGG - chr7.2:44906857-44906876 MS.gene45956:CDS 35.0%
AATCTTGCAATAGTCCCTAA+AGG + chr7.2:44905565-44905584 None:intergenic 35.0%
AATGCCTCAAAGTTAGATTC+TGG + chr7.2:44907231-44907250 None:intergenic 35.0%
AGCATGGAATAACCCTATTA+TGG + chr7.2:44907118-44907137 None:intergenic 35.0%
AGGAACCAAAAATGCTATTG+TGG - chr7.2:44905841-44905860 MS.gene45956:intron 35.0%
AGGAAGCAAAAAGTCAACAT+GGG + chr7.2:44907524-44907543 None:intergenic 35.0%
AGGTTAGTACATCTTTAGCA+TGG + chr7.2:44907134-44907153 None:intergenic 35.0%
ATAGTAGAAATGGACGACAT+TGG + chr7.2:44906819-44906838 None:intergenic 35.0%
ATTTGTCAAAGCAGAAGTTG+AGG + chr7.2:44907014-44907033 None:intergenic 35.0%
CGAGACATTGTTTGAACTTT+CGG + chr7.2:44907658-44907677 None:intergenic 35.0%
CTATATTCAGTTTCAGCTGT+CGG + chr7.2:44905738-44905757 None:intergenic 35.0%
CTTCTTGAGTTCAAATTGTG+GGG + chr7.2:44906559-44906578 None:intergenic 35.0%
GAAGCAGATATTACCAATTG+GGG - chr7.2:44906575-44906594 MS.gene45956:intron 35.0%
GAATTGGGATTGTAGAAGAA+AGG - chr7.2:44905792-44905811 MS.gene45956:intron 35.0%
GACAATATCGAGTTTCTGAT+TGG - chr7.2:44906261-44906280 MS.gene45956:CDS 35.0%
GATTGTAGAAGAAAGGTAAG+TGG - chr7.2:44905799-44905818 MS.gene45956:intron 35.0%
GCAAAATCATCATATGCCAA+AGG - chr7.2:44906753-44906772 MS.gene45956:CDS 35.0%
GCTCCATCAAAAAGAGAATT+TGG + chr7.2:44907427-44907446 None:intergenic 35.0%
GCTTCTTGAGTTCAAATTGT+GGG + chr7.2:44906560-44906579 None:intergenic 35.0%
GGAACCAAAAATGCTATTGT+GGG - chr7.2:44905842-44905861 MS.gene45956:intron 35.0%
GGTTCCTAAAAAAGCTCAAA+AGG + chr7.2:44905828-44905847 None:intergenic 35.0%
TAATCTTCCATCGAGTTTCT+TGG + chr7.2:44905712-44905731 None:intergenic 35.0%
TACACCAGAATCTAACTTTG+AGG - chr7.2:44907224-44907243 MS.gene45956:CDS 35.0%
TACCGACCTTACAAAAGAAA+TGG - chr7.2:44906656-44906675 MS.gene45956:CDS 35.0%
TAGGAAGCAAAAAGTCAACA+TGG + chr7.2:44907525-44907544 None:intergenic 35.0%
TATTGCAAGATTTGTGGCTA+AGG - chr7.2:44905573-44905592 MS.gene45956:intron 35.0%
TCAACTTCTGCTTTGACAAA+TGG - chr7.2:44907013-44907032 MS.gene45956:CDS 35.0%
TGCTTCTTGAGTTCAAATTG+TGG + chr7.2:44906561-44906580 None:intergenic 35.0%
TGTTGACATCAACAAGAAAG+AGG - chr7.2:44906044-44906063 MS.gene45956:intron 35.0%
TTGGGATCAACCACTTTAAA+TGG + chr7.2:44906723-44906742 None:intergenic 35.0%
TTTCCTCCAAATCAGATAGA+GGG + chr7.2:44906866-44906885 None:intergenic 35.0%
! CAAATTCTGTTTGTTGAAGC+AGG - chr7.2:44906348-44906367 MS.gene45956:intron 35.0%
! CAAGGATTTTCGTCTTTAAG+CGG - chr7.2:44906438-44906457 MS.gene45956:CDS 35.0%
! CACCATTTCTTTTGTAAGGT+CGG + chr7.2:44906661-44906680 None:intergenic 35.0%
! CTTTCCCACAATAGCATTTT+TGG + chr7.2:44905849-44905868 None:intergenic 35.0%
! TAATGTTCGTCTGAGAGTTT+TGG - chr7.2:44905459-44905478 MS.gene45956:CDS 35.0%
!! AGTGATACCTGTATTTTAGG+GGG + chr7.2:44907360-44907379 None:intergenic 35.0%
!! GAATCTAACTTTGAGGCATT+AGG - chr7.2:44907231-44907250 MS.gene45956:CDS 35.0%
!! GATGCCTTTTGAGCTTTTTT+AGG - chr7.2:44905821-44905840 MS.gene45956:intron 35.0%
!! TATCAAAATTGGTGTCAAGG+AGG - chr7.2:44906890-44906909 MS.gene45956:CDS 35.0%
AAGTTTGAGTGTTCAGCTTC+CGG - chr7.2:44907269-44907288 MS.gene45956:CDS 40.0%
AGCTTCTTAACGTTGCCTTT+AGG - chr7.2:44905547-44905566 MS.gene45956:intron 40.0%
AGGGACTATTGCAAGATTTG+TGG - chr7.2:44905567-44905586 MS.gene45956:intron 40.0%
AGTACTTTGTGTGCGAGAAT+TGG - chr7.2:44905776-44905795 MS.gene45956:intron 40.0%
ATATGCAACACTCCTCCTAA+GGG + chr7.2:44906414-44906433 None:intergenic 40.0%
CAAAGGACCGTCAATGTATA+TGG - chr7.2:44906770-44906789 MS.gene45956:CDS 40.0%
CAACAAAGTTGTGTATGCTG+AGG - chr7.2:44905495-44905514 MS.gene45956:intron 40.0%
CATATACATTGACGGTCCTT+TGG + chr7.2:44906772-44906791 None:intergenic 40.0%
CCTTCAACCAAAGTAACTCT+TGG + chr7.2:44907327-44907346 None:intergenic 40.0%
CTTTCCTCCAAATCAGATAG+AGG + chr7.2:44906867-44906886 None:intergenic 40.0%
GCAACGATGAACACTAACAA+AGG - chr7.2:44907796-44907815 MS.gene45956:CDS 40.0%
GCTTCTTAACGTTGCCTTTA+GGG - chr7.2:44905548-44905567 MS.gene45956:intron 40.0%
GTACTTTGTGTGCGAGAATT+GGG - chr7.2:44905777-44905796 MS.gene45956:intron 40.0%
GTCTATCCTCATCAGATGTT+AGG + chr7.2:44906290-44906309 None:intergenic 40.0%
TCTGCCACCATATACATTGA+CGG + chr7.2:44906780-44906799 None:intergenic 40.0%
TGAGTACCACTTGAACAATC+CGG + chr7.2:44907291-44907310 None:intergenic 40.0%
TGTTGATCATACGGACATAC+AGG - chr7.2:44907164-44907183 MS.gene45956:CDS 40.0%
TTTGTGCTCACTTACTTGCA+AGG - chr7.2:44905672-44905691 MS.gene45956:intron 40.0%
! AGTTTTCTAACCTTCCCCTT+AGG - chr7.2:44906396-44906415 MS.gene45956:intron 40.0%
! CCAAGAGTTACTTTGGTTGA+AGG - chr7.2:44907324-44907343 MS.gene45956:intron 40.0%
! GCGAACACTACACTTACTTT+TGG - chr7.2:44906948-44906967 MS.gene45956:CDS 40.0%
AAAGTTGTGTATGCTGAGGC+TGG - chr7.2:44905499-44905518 MS.gene45956:intron 45.0%
AAGTTGTGTATGCTGAGGCT+GGG - chr7.2:44905500-44905519 MS.gene45956:intron 45.0%
ACTGCAACCAAGAAACTCGA+TGG - chr7.2:44905702-44905721 MS.gene45956:intron 45.0%
AGAGAACAAGACTCCTGCAT+TGG - chr7.2:44907998-44908017 MS.gene45956:CDS 45.0%
AGGACCGTCAATGTATATGG+TGG - chr7.2:44906773-44906792 MS.gene45956:CDS 45.0%
CATATGCAACACTCCTCCTA+AGG + chr7.2:44906415-44906434 None:intergenic 45.0%
GCAGATATTACCAATTGGGG+CGG - chr7.2:44906578-44906597 MS.gene45956:CDS 45.0%
GCAGCTTCCAAGAGTTACTT+TGG - chr7.2:44907317-44907336 MS.gene45956:intron 45.0%
TATGCAACACTCCTCCTAAG+GGG + chr7.2:44906413-44906432 None:intergenic 45.0%
TCAAATTGTGGGGCAATGAG+AGG + chr7.2:44906549-44906568 None:intergenic 45.0%
TGGAGACCTAACATCTGATG+AGG - chr7.2:44906281-44906300 MS.gene45956:CDS 45.0%
TTGGAAGAGGAAGCTTACAC+TGG - chr7.2:44907956-44907975 MS.gene45956:CDS 45.0%
TTTCTAACCTTCCCCTTAGG+AGG - chr7.2:44906399-44906418 MS.gene45956:intron 45.0%
! CTTTTCTGCTCCTGAAGGTA+GGG - chr7.2:44907200-44907219 MS.gene45956:CDS 45.0%
! TGGCTTTGCGAAGATCAACT+AGG - chr7.2:44908018-44908037 MS.gene45956:CDS 45.0%
!! AGTCCCTCTATCTGATTTGG+AGG - chr7.2:44906860-44906879 MS.gene45956:CDS 45.0%
!! ATACCTGTATTTTAGGGGGC+AGG + chr7.2:44907356-44907375 None:intergenic 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG - chr7.2:44906420-44906439 MS.gene45956:intron 45.0%
!! TACCTGTATTTTAGGGGGCA+GGG + chr7.2:44907355-44907374 None:intergenic 45.0%
!! TGTTCGTCTGAGAGTTTTGG+TGG - chr7.2:44905462-44905481 MS.gene45956:CDS 45.0%
CAGCTTCCGGATTGTTCAAG+TGG - chr7.2:44907282-44907301 MS.gene45956:CDS 50.0%
CCTACCTTCAGGAGCAGAAA+AGG + chr7.2:44907202-44907221 None:intergenic 50.0%
CGAGACTACTGATGCTATCG+AGG - chr7.2:44906014-44906033 MS.gene45956:intron 50.0%
GATCTTCGCAAAGCCAATGC+AGG + chr7.2:44908014-44908033 None:intergenic 50.0%
! CCTTTTCTGCTCCTGAAGGT+AGG - chr7.2:44907199-44907218 MS.gene45956:CDS 50.0%
! TCAGCCTTTTCTGCTCCTGA+AGG - chr7.2:44907195-44907214 MS.gene45956:CDS 50.0%
!! ACCTGTATTTTAGGGGGCAG+GGG + chr7.2:44907354-44907373 None:intergenic 50.0%
CAACACTCCTCCTAAGGGGA+AGG + chr7.2:44906409-44906428 None:intergenic 55.0%
TCTGGTGTAGCCCTACCTTC+AGG + chr7.2:44907213-44907232 None:intergenic 55.0%
TGTGTATGCTGAGGCTGGGA+AGG - chr7.2:44905504-44905523 MS.gene45956:intron 55.0%
GCCCCTGCCCCCTAAAATAC+AGG - chr7.2:44907350-44907369 MS.gene45956:intron 60.0%
GGCAAGAAAGCCGCCCCAAT+TGG + chr7.2:44906591-44906610 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 44905421 44908067 44905421 ID=MS.gene45956
chr7.2 mRNA 44905421 44908067 44905421 ID=MS.gene45956.t1;Parent=MS.gene45956
chr7.2 exon 44907675 44908067 44907675 ID=MS.gene45956.t1.exon1;Parent=MS.gene45956.t1
chr7.2 CDS 44907675 44908067 44907675 ID=cds.MS.gene45956.t1;Parent=MS.gene45956.t1
chr7.2 exon 44907423 44907563 44907423 ID=MS.gene45956.t1.exon2;Parent=MS.gene45956.t1
chr7.2 CDS 44907423 44907563 44907423 ID=cds.MS.gene45956.t1;Parent=MS.gene45956.t1
chr7.2 exon 44906577 44907323 44906577 ID=MS.gene45956.t1.exon3;Parent=MS.gene45956.t1
chr7.2 CDS 44906577 44907323 44906577 ID=cds.MS.gene45956.t1;Parent=MS.gene45956.t1
chr7.2 exon 44906425 44906505 44906425 ID=MS.gene45956.t1.exon4;Parent=MS.gene45956.t1
chr7.2 CDS 44906425 44906505 44906425 ID=cds.MS.gene45956.t1;Parent=MS.gene45956.t1
chr7.2 exon 44906117 44906302 44906117 ID=MS.gene45956.t1.exon5;Parent=MS.gene45956.t1
chr7.2 CDS 44906117 44906302 44906117 ID=cds.MS.gene45956.t1;Parent=MS.gene45956.t1
chr7.2 exon 44905421 44905495 44905421 ID=MS.gene45956.t1.exon6;Parent=MS.gene45956.t1
chr7.2 CDS 44905421 44905495 44905421 ID=cds.MS.gene45956.t1;Parent=MS.gene45956.t1
Gene Sequence

>MS.gene45956

ATGGCTTCCATTCAAAGTGAATCAGTTGAACAAGTTGATAATGTTCGTCTGAGAGTTTTGGTGGACAAAGAAAACAACAAAGTTGTGTATGCTGAGGCTGGGAAGGATTTCGTTGATGCTCTCTTCAGCTTCTTAACGTTGCCTTTAGGGACTATTGCAAGATTTGTGGCTAAGGACTCAAATATTGAAGCAGTGAAATTTGGCAGCATTAGCTCATTGTATCAAAGCGTGTCAAATCTTGATAAACAATATTTGTGCTCACTTACTTGCAAGGAAATGCTACTGCAACCAAGAAACTCGATGGAAGATTACTGCCGACAGCTGAAACTGAATATAGACGACACTGAACGCTTGCAGTACTTTGTGTGCGAGAATTGGGATTGTAGAAGAAAGGTAAGTGGATGCCTTTTGAGCTTTTTTAGGAACCAAAAATGCTATTGTGGGAAAGTAATGAACAGAGAAGTATTCCCAAAGTTTTTCAATATAGAAAATGGTTTTGTGAAGGAAAATGCTACTTTTATCATTTGTGATGATCTTTGTGTTTTGCCTAATGTTTTTGGAGCAAGTTTAAATCTACTTCAAAAGCTTGGAGTCGAGACTACTGATGCTATCGAGGAACAAGCTGTTGACATCAACAAGAAAGAGGCATGATTTCTTCAGCTTCTATACCATCTACATTATATATATCATCTTTGAATATTGATTATTTTTTCTAATTGATTATTTCTTAATTCGATTGTATAGGTAGTTGATCTTCTCAAGTTATCATTAATCTCAAAGACCCCTTTGACCGATTTTATTTTACGGAAGAGCCAATCTGTTGATAATTTGAATCTAAGAGACAATATCGAGTTTCTGATTGGAGACCTAACATCTGATGAGGATAGACATATGTCTGTGAAAGTGACATTAAGAAAATCAAATGAACAAATTCTGTTTGTTGAAGCAGGAGATGATTTTATTGACTTTGTTTTTAGTTTTCTAACCTTCCCCTTAGGAGGAGTGTTGCATATGCTTCAAGGATTTTCGTCTTTAAGCGGCATTGATAACTTGTACAAGAGCTTTTCTGATTTGAGTCCAGACATATATTTAATGTCAGAGGGACTCAAAGACAAACTATGTACGCCTCTCATTGCCCCACAATTTGAACTCAAGAAGCAGATATTACCAATTGGGGCGGCTTTCTTGCCTGTGAATTATTGTCATACTTACTATGATTACACAAGAATGAGGTATACCGACCTTACAAAAGAAATGGTGTATTCTAACTATAATAGAATTCATGAAGAAAAGTATGTACCATTTAAAGTGGTTGATCCCAAGTCTTCTAATGCAAAATCATCATATGCCAAAGGACCGTCAATGTATATGGTGGCAGACGACTTGTGTGTGAGTCCAATGTCGTCCATTTCTACTATGTCACTTCTAAAAAGATCAAAAGTCCCTCTATCTGATTTGGAGGAAAGAGTTATCAAAATTGGTGTCAAGGAGGTATGCACATGTTCATCTTGTAATTGTTTTTTATTTGCGAACACTACACTTACTTTTGGTACATATTACAGGGTCTCAGCATACTTAAAGCTTCACTGACCTCAACTTCTGCTTTGACAAATGGTCTCAACCAACTTATAAGAACTGTTAAGGTGGAGAAATGACTAAATATTTTCCTTATCAAGTTTAGATTACTCTTTTCTCCATAATAGGGTTATTCCATGCTAAAGATGTACTAACCTAACAAGCTTTTGTTGATCATACGGACATACAGGTCTCAACTTCAGCCTTTTCTGCTCCTGAAGGTAGGGCTACACCAGAATCTAACTTTGAGGCATTAGGCATAAATAATGCTTCAAGTTTGAGTGTTCAGCTTCCGGATTGTTCAAGTGGTACTCAAGTTTTGCAGCTTCCAAGAGTTACTTTGGTTGAAGGAGTGCCCCTGCCCCCTAAAATACAGGTATCACTATTTCTTATTTACTTGCATCTTTGTTGATATGTTTATTGCTGAACCAAATTCTCTTTTTGATGGAGCCACACATCAATATTGCAAAAAAGTTTAGTTTGTGACTTGGTACATAATACTCCAATATGTGGATATATGTCAAACCCATGTTGACTTTTTGCTTCCTAAACTATTTTTCATTTCTTTCATGGATTTTTAAATTCATTATGTTTTTTGAGATTAGGCGTGTCTTCATGTCTTACATGTATCGGTATACGACACTTGCATTCACACAAGTCCGAAAGTTCAAACAATGTCTCGTTTTTTTCCTTTACTTCACACTTTATATATTCTTTAGACACATCTCTTTAGACATATCTCTATGAGATTTAACGATGTGTATAAGCAACAATACTATGAGATTTAAAGATGCGTAGAAGCAACGATGAACACTAACAAAGGTTGAAAACACATTAAATACATGTGTATAATATGATTAACAATATAGGTAGTTTTGAAATAATATTTGTCTTTTAGTTCGTGTCAGTGTTGCTATTGTTATGTATTTGTAGTGTTGATATGTCAGTATCTATATCTTTTTGGAAGAGGAAGCTTACACTGGTATTTTCAATTCAGGAAAAAGAGAACAAGACTCCTGCATTGGCTTTGCGAAGATCAACTAGGAAACGCAAAGCTAGCGATCATGCTTGA
Protein sequence

>MS.gene45956.t1

MASIQSESVEQVDNVRLRVLVDKENNKVVYAEAGKDFVDALFSFLTLPLGTIARFVAKDSNIEAVKFGSISSLYQSVSNLDKQYLCSLTCKEMLLQPRNSMEDYCRQLKLNIDDTERLQYFVCENWDCRRKENATFIICDDLCVLPNVFGASLNLLQKLGVETTDAIEEQAVDINKKEVVDLLKLSLISKTPLTDFILRKSQSVDNLNLRDNIEFLIGDLTSDEDRHMSVKVTLRKSNEQILFVEAGDDFIDFVFSFLTFPLGGVLHMLQGFSSLSGIDNLYKSFSDLSPDIYLMSEGLKDKLCTPLIAPQFELKKQILPIGAAFLPVNYCHTYYDYTRMRYTDLTKEMVYSNYNRIHEEKYVPFKVVDPKSSNAKSSYAKGPSMYMVADDLCVSPMSSISTMSLLKRSKVPLSDLEERVIKIGVKEGLSILKASLTSTSALTNGLNQLIRTVKVSTSAFSAPEGRATPESNFEALGINNASSLSVQLPDCSSGTQVLQLPRVTLVEGVPLPPKIQEKENKTPALALRRSTRKRKASDHA