AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055181

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055181.t1 MTR_7g063900 92.008 488 39 0 1 488 1 488 0.0 900
MS.gene055181.t1 MTR_7g063890 73.566 488 126 3 2 488 19 504 0.0 675
MS.gene055181.t1 MTR_7g062280 55.070 503 199 8 1 488 1 491 1.26e-180 515
MS.gene055181.t1 MTR_7g062300 57.055 489 185 11 1 481 1 472 6.50e-177 505
MS.gene055181.t1 MTR_7g063840 55.601 491 197 7 1 488 1 473 9.77e-177 504
MS.gene055181.t1 MTR_7g063880 55.193 491 187 10 2 486 3 466 6.38e-174 497
MS.gene055181.t1 MTR_7g063820 56.137 497 196 10 1 488 1 484 5.58e-169 485
MS.gene055181.t1 MTR_7g063920 54.508 488 167 7 2 488 3 436 5.49e-168 481
MS.gene055181.t1 MTR_7g063660 54.303 488 205 10 5 488 4 477 1.18e-167 482
MS.gene055181.t1 MTR_7g063830 52.953 491 171 10 1 483 1 439 3.92e-163 469
MS.gene055181.t1 MTR_3g007740 52.024 494 172 14 3 483 2 443 1.13e-143 419
MS.gene055181.t1 MTR_7g063670 48.980 490 196 11 8 488 13 457 1.98e-132 391
MS.gene055181.t1 MTR_7g066570 43.141 503 247 13 3 486 2 484 1.83e-119 362
MS.gene055181.t1 MTR_7g066430 42.073 492 256 11 10 482 4 485 2.75e-111 338
MS.gene055181.t1 MTR_7g066410 40.421 522 263 9 1 483 1 513 1.98e-108 332
MS.gene055181.t1 MTR_7g066260 41.036 502 235 14 1 484 6 464 3.87e-106 325
MS.gene055181.t1 MTR_7g066260 26.230 244 146 8 13 255 272 482 1.32e-13 73.2
MS.gene055181.t1 MTR_3g065200 43.284 469 194 14 10 469 3 408 1.61e-105 322
MS.gene055181.t1 MTR_7g066340 40.080 499 240 15 1 484 1 455 3.88e-101 311
MS.gene055181.t1 MTR_7g066340 28.033 239 132 9 6 239 260 463 4.31e-17 84.0
MS.gene055181.t1 MTR_7g058710 38.178 516 254 16 2 488 4 483 7.29e-100 308
MS.gene055181.t1 MTR_7g012680 39.321 501 238 11 2 488 3 451 2.52e-99 306
MS.gene055181.t1 MTR_7g066350 38.980 490 242 11 1 478 1 445 2.76e-92 288
MS.gene055181.t1 MTR_7g066580 37.113 485 241 13 16 479 1 442 1.55e-89 281
MS.gene055181.t1 MTR_7g066360 38.755 498 231 14 2 479 3 446 5.01e-89 280
MS.gene055181.t1 MTR_1g041315 36.929 482 237 11 9 466 13 451 4.65e-85 270
MS.gene055181.t1 MTR_1g041315 26.852 216 121 9 3 216 271 451 1.08e-12 70.5
MS.gene055181.t1 MTR_7g066290 37.228 505 224 15 1 483 1 434 7.17e-84 266
MS.gene055181.t1 MTR_7g066400 35.141 498 238 15 1 478 1 433 5.03e-81 259
MS.gene055181.t1 MTR_7g063720 51.362 257 95 6 232 486 2 230 2.16e-77 242
MS.gene055181.t1 MTR_7g063720 30.876 217 125 8 13 226 26 220 6.59e-19 86.3
MS.gene055181.t1 MTR_7g066480 44.582 323 166 5 10 323 16 334 1.03e-76 247
MS.gene055181.t1 MTR_7g066480 48.810 84 43 0 400 483 339 422 2.19e-14 75.5
MS.gene055181.t1 MTR_7g066490 44.340 318 150 7 11 319 17 316 3.77e-75 243
MS.gene055181.t1 MTR_7g066490 41.284 109 55 1 375 483 309 408 1.77e-13 72.4
MS.gene055181.t1 MTR_4g019310 35.039 508 282 17 4 482 2 490 3.37e-74 243
MS.gene055181.t1 MTR_7g066310 34.519 478 213 11 9 484 6 385 7.35e-73 236
MS.gene055181.t1 MTR_7g066310 28.514 249 138 9 6 252 190 400 9.24e-17 82.4
MS.gene055181.t1 MTR_2g029400 35.032 471 219 12 9 471 13 404 2.95e-71 232
MS.gene055181.t1 MTR_4g017440 32.943 513 291 15 5 482 8 502 5.82e-65 218
MS.gene055181.t1 MTR_7g100420 43.252 326 166 7 153 478 87 393 5.08e-64 213
MS.gene055181.t1 MTR_7g100420 71.154 52 15 0 2 53 31 82 1.99e-15 78.6
MS.gene055181.t1 MTR_7g100420 27.660 235 153 7 10 236 177 402 7.96e-11 64.3
MS.gene055181.t1 MTR_7g062270 55.789 190 70 4 3 184 2 185 1.20e-63 211
MS.gene055181.t1 MTR_7g062270 29.167 192 97 8 253 429 11 178 5.26e-12 67.8
MS.gene055181.t1 MTR_4g017830 32.370 519 296 19 1 482 1 501 3.15e-63 214
MS.gene055181.t1 MTR_7g063850 42.765 311 154 8 179 488 1 288 6.95e-63 206
MS.gene055181.t1 MTR_4g017470 31.311 511 280 13 3 483 2 471 2.20e-62 211
MS.gene055181.t1 MTR_4g017410 32.755 519 276 18 3 483 2 485 1.32e-61 209
MS.gene055181.t1 MTR_7g058700 39.181 342 156 7 22 341 531 842 6.04e-61 215
MS.gene055181.t1 MTR_7g058700 45.455 77 42 0 412 488 851 927 2.23e-12 70.1
MS.gene055181.t1 MTR_4g017610 32.087 508 282 18 1 478 1 475 4.20e-58 199
MS.gene055181.t1 MTR_4g019340 31.548 504 280 16 1 470 29 501 4.48e-56 195
MS.gene055181.t1 MTR_7g063690 42.958 284 92 6 2 279 3 222 6.10e-54 181
MS.gene055181.t1 MTR_7g066280 33.890 419 227 16 89 484 1 392 7.59e-51 178
MS.gene055181.t1 MTR_1g014060 44.059 202 108 4 17 215 7 206 1.20e-46 167
MS.gene055181.t1 MTR_1g014060 35.268 224 109 8 271 488 197 390 1.30e-30 122
MS.gene055181.t1 MTR_1g014060 29.630 216 115 9 265 465 13 206 3.44e-15 77.8
MS.gene055181.t1 MTR_4g017550 30.864 486 254 18 40 479 21 470 1.53e-45 166
MS.gene055181.t1 MTR_4g017550 29.707 239 126 9 10 225 247 466 1.15e-13 73.6
MS.gene055181.t1 MTR_8g023240 26.294 483 306 14 7 474 34 481 1.06e-41 157
MS.gene055181.t1 MTR_7g066680 35.048 311 148 8 209 478 37 334 8.69e-41 149
MS.gene055181.t1 MTR_7g066680 26.316 228 129 9 3 211 79 286 1.17e-12 69.3
MS.gene055181.t1 MTR_8g445860 30.380 237 140 7 10 232 13 238 1.17e-26 108
MS.gene055181.t1 MTR_8g445860 28.512 242 140 7 248 475 9 231 5.38e-21 92.4
MS.gene055181.t1 MTR_0150s0010 30.081 246 148 6 1 231 1 237 5.21e-25 103
MS.gene055181.t1 MTR_0150s0010 30.769 234 152 7 246 475 4 231 2.63e-20 90.5
MS.gene055181.t1 MTR_1g115440 30.081 246 146 7 2 231 3 238 3.98e-23 98.6
MS.gene055181.t1 MTR_7g063760 56.944 72 30 1 418 488 2 73 2.43e-20 85.5
MS.gene055181.t1 MTR_2g067310 35.294 187 78 6 10 192 43 190 7.37e-20 89.4
MS.gene055181.t1 MTR_1g115455 28.400 250 141 8 3 232 2 233 6.65e-19 86.3
MS.gene055181.t1 MTR_7g063870 68.421 57 18 0 4 60 25 81 2.31e-18 85.1
MS.gene055181.t1 MTR_7g063870 54.839 62 28 0 155 216 96 157 1.64e-13 70.9
MS.gene055181.t1 MTR_1g115450 33.600 125 74 3 7 127 4 123 6.93e-14 69.3
MS.gene055181.t1 MTR_1g115450 32.143 84 57 0 248 331 3 86 4.77e-11 61.2
MS.gene055181.t1 MTR_7g066390 43.023 86 45 2 399 484 43 124 5.63e-13 67.0
MS.gene055181.t1 MTR_1g115470 42.157 102 51 3 10 109 6 101 1.47e-12 69.7
MS.gene055181.t1 MTR_8g445920 42.045 88 46 2 1 88 1 83 2.69e-12 63.9
MS.gene055181.t1 MTR_8g044890 42.045 88 46 2 1 88 1 83 2.69e-12 63.9
MS.gene055181.t1 MTR_4g019240 36.522 115 61 4 6 110 7 119 9.21e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055181.t1 AT5G01150 31.225 506 296 13 3 483 2 480 6.36e-64 216
MS.gene055181.t1 AT5G01120 34.756 492 281 16 11 478 10 485 3.89e-62 211
MS.gene055181.t1 AT3G09140 32.233 515 296 14 1 483 1 494 3.61e-61 208
MS.gene055181.t1 AT5G01130 31.610 503 274 15 3 488 2 451 1.03e-56 195
MS.gene055181.t1 AT5G43240 33.467 499 282 16 11 478 10 489 1.63e-56 196
MS.gene055181.t1 AT5G43240 33.467 499 282 16 11 478 10 489 1.63e-56 196
MS.gene055181.t1 AT5G43240 33.467 499 282 16 11 478 10 489 1.63e-56 196
MS.gene055181.t1 AT3G09110 35.398 339 196 5 10 336 9 336 2.43e-56 191
MS.gene055181.t1 AT3G09140 30.571 543 296 15 1 483 1 522 2.78e-56 196
MS.gene055181.t1 AT5G01140 30.980 510 274 19 3 488 2 457 9.94e-54 187
MS.gene055181.t1 AT3G09120 33.866 313 188 5 9 306 5 313 1.01e-42 154
MS.gene055181.t1 AT3G09120 28.033 239 143 8 252 476 6 229 2.15e-15 77.4
MS.gene055181.t1 AT5G37320 26.641 518 289 15 15 487 14 485 5.92e-37 142
MS.gene055181.t1 AT5G37320 25.620 242 160 6 248 475 5 240 3.16e-11 65.9
MS.gene055181.t1 AT5G43240 31.176 340 195 14 159 478 25 345 4.46e-21 95.1

Find 83 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTTCCTTTAGGTGATT+TGG 0.164558 7.4:-40234330 None:intergenic
TAATCTTCAGAAGAGTTATT+TGG 0.189129 7.4:-40233305 None:intergenic
AAATGGTCTTCGTCACTTAT+TGG 0.214637 7.4:+40234665 MS.gene055181:CDS
TCTCTGACAGATTTGTTTCT+AGG 0.224145 7.4:+40233801 MS.gene055181:CDS
CTTAGTATGCTTCAGAATTA+TGG 0.229053 7.4:+40233578 MS.gene055181:CDS
AAGAGAAAACACTTGAATTC+TGG 0.237768 7.4:-40233839 None:intergenic
GGAGGAATCGTTCGCATATT+AGG 0.271938 7.4:+40233996 MS.gene055181:CDS
TAACCATCATCATTTCCTTT+AGG 0.299565 7.4:-40234338 None:intergenic
TCATTTCCTTTAGGTGATTT+GGG 0.316839 7.4:-40234329 None:intergenic
ATTAGGAGGGAACTGTTCTA+TGG 0.341493 7.4:+40234013 MS.gene055181:CDS
GATTGTTTCTGCATCAATAA+TGG 0.349655 7.4:+40233395 MS.gene055181:CDS
TGCAAGTTTAATTTGAAGTA+AGG 0.354969 7.4:-40234134 None:intergenic
AATCTTCAGAAGAGTTATTT+GGG 0.363668 7.4:-40233304 None:intergenic
GCAGTGTCTGAGCATATTAA+AGG 0.368152 7.4:+40234614 MS.gene055181:intron
CAAAGTACCTCATATGTTGC+AGG 0.372770 7.4:+40233369 MS.gene055181:CDS
ATCAATGTTAAGTTTAAGAT+TGG 0.374669 7.4:-40233333 None:intergenic
GAAGATAGGAGTCGTGAATA+TGG 0.383191 7.4:+40234260 MS.gene055181:CDS
ATGCGAACGATTCCTCCTAA+TGG 0.384783 7.4:-40233990 None:intergenic
TGTTCTATGGGTAACATTGA+TGG 0.385259 7.4:+40234026 MS.gene055181:CDS
CTCAGCAAATAAGACTTTGT+TGG 0.395054 7.4:-40233090 None:intergenic
ACACTTGAATTCTGGATCAA+TGG 0.401212 7.4:-40233831 None:intergenic
AAAGTCTTATTTGCTGAGGC+TGG 0.410372 7.4:+40233095 MS.gene055181:CDS
GCGAGTGCGACTGAAACTTT+TGG 0.410504 7.4:+40233055 MS.gene055181:CDS
AGATGGACTAAGAACTTATA+TGG 0.410621 7.4:+40234370 MS.gene055181:CDS
AAGACTTGTTGATCCACATT+TGG 0.411738 7.4:+40234109 MS.gene055181:CDS
TTCAAACAACCTATGGTAAC+AGG 0.414044 7.4:-40233206 None:intergenic
CCGGTGAATTCCACTGAGTT+CGG 0.420356 7.4:-40233554 None:intergenic
CACTTATTGGCCAATGTTGA+GGG 0.430653 7.4:+40234678 MS.gene055181:CDS
AAGAAAGGATTTGTCAAAGA+AGG 0.431327 7.4:+40233494 MS.gene055181:CDS
TCACTTATTGGCCAATGTTG+AGG 0.462243 7.4:+40234677 MS.gene055181:CDS
TTCAACAAATAGAAACTGTA+TGG 0.463521 7.4:+40233430 MS.gene055181:CDS
TTCTTGAAACACTTTAAGAA+AGG 0.465555 7.4:+40233479 MS.gene055181:CDS
CAACATATGAGGTACTTTGT+AGG 0.472765 7.4:-40233365 None:intergenic
TCTTACCTCCTTGATGCCAA+TGG 0.481755 7.4:-40234495 None:intergenic
AAATGAGTTCAAACAACCTA+TGG 0.487108 7.4:-40233213 None:intergenic
AAATGATGATGGTTATATCA+AGG 0.487223 7.4:+40234346 MS.gene055181:CDS
AATTCCTCTTGATGATATGA+AGG 0.487396 7.4:+40234460 MS.gene055181:CDS
GATGACTACTAACTAGGTTC+AGG 0.489314 7.4:-40234307 None:intergenic
AATCAAACCTGCAACATATG+AGG 0.493783 7.4:-40233376 None:intergenic
GCAGTTATGAGAAACATGTT+AGG 0.494533 7.4:+40234282 MS.gene055181:CDS
TCATCATCCGCTCTAACAAA+TGG 0.494553 7.4:+40234648 MS.gene055181:CDS
TTTCTCACATTTCCATTAGG+AGG 0.497680 7.4:+40233978 MS.gene055181:CDS
TCTCAACGTCACTAAAGAAA+AGG 0.500041 7.4:+40233634 MS.gene055181:CDS
TTCACACGAGGCTCTTGAAT+AGG 0.500243 7.4:-40234164 None:intergenic
CATAATTCTGAAGCATACTA+AGG 0.507361 7.4:-40233577 None:intergenic
ACAAATAGAAACTGTATGGA+TGG 0.509877 7.4:+40233434 MS.gene055181:CDS
CAAATCTGTCAGAGACGACT+TGG 0.509878 7.4:-40233793 None:intergenic
AAGAAAATTGAACGACTCAA+AGG 0.511697 7.4:-40233461 None:intergenic
ATTTGGGATGACTACTAACT+AGG 0.512518 7.4:-40234313 None:intergenic
AAAAGACATAAGTTCAGTAA+AGG 0.513517 7.4:+40233604 MS.gene055181:CDS
AAGGAAAAGCTTGTCACCAT+TGG 0.514654 7.4:+40234479 MS.gene055181:CDS
AAGTCTTATTTGCTGAGGCT+GGG 0.515962 7.4:+40233096 MS.gene055181:CDS
GTACAGAAGGACTCAAACAT+AGG 0.519714 7.4:+40233182 MS.gene055181:CDS
AGTTTCTTGACATTGCCGTT+AGG 0.520091 7.4:+40233143 MS.gene055181:CDS
GCTTGTCACCATTGGCATCA+AGG 0.526563 7.4:+40234487 MS.gene055181:CDS
AACTTAACATTGATGACACT+CGG 0.529548 7.4:+40233342 MS.gene055181:CDS
AAAATAGAAAATGTAGAAGA+TGG 0.529603 7.4:-40234416 None:intergenic
AGTCATCCCAAATCACCTAA+AGG 0.545154 7.4:+40234323 MS.gene055181:CDS
GATGGTTATATCAAGGGAGA+TGG 0.548149 7.4:+40234353 MS.gene055181:CDS
AATGATGATGGTTATATCAA+GGG 0.548455 7.4:+40234347 MS.gene055181:CDS
TCACCTAAAGGAAATGATGA+TGG 0.552139 7.4:+40234335 MS.gene055181:CDS
TTGAAGTAAGGTGCCAAATG+TGG 0.553286 7.4:-40234122 None:intergenic
TTATATGGTAACAGATGACT+TGG 0.560415 7.4:+40234385 MS.gene055181:CDS
TTAGGAGGGAACTGTTCTAT+GGG 0.565833 7.4:+40234014 MS.gene055181:CDS
CTTCTGTACGAGTCTTGCGA+TGG 0.567561 7.4:-40233168 None:intergenic
ATTCTGAAGCATACTAAGGC+CGG 0.571691 7.4:-40233573 None:intergenic
GGAATCGTTCGCATATTAGG+AGG 0.579090 7.4:+40233999 MS.gene055181:CDS
GGCAAGATATTGTATGCTCA+AGG 0.582361 7.4:+40233924 MS.gene055181:CDS
CCGAACTCAGTGGAATTCAC+CGG 0.603210 7.4:+40233554 MS.gene055181:CDS
CTTATTGGCCAATGTTGAGG+GGG 0.604425 7.4:+40234680 MS.gene055181:CDS
TGTTTGAGTAGTAGCAGCCA+TGG 0.605494 7.4:-40233027 None:intergenic
CAACAAAGTCTTATTTGCTG+AGG 0.606736 7.4:+40233091 MS.gene055181:CDS
CTAGTTTATAGAAAATCAGA+TGG 0.609106 7.4:+40233903 MS.gene055181:CDS
CATCGCAAGACTCGTACAGA+AGG 0.609224 7.4:+40233169 MS.gene055181:CDS
GGCTGCTACTACTCAAACAG+AGG 0.620428 7.4:+40233031 MS.gene055181:CDS
ACGAAGACCATTTGTTAGAG+CGG 0.622268 7.4:-40234655 None:intergenic
ACTTATTGGCCAATGTTGAG+GGG 0.633554 7.4:+40234679 MS.gene055181:CDS
AACATAGGACCTGTTACCAT+AGG 0.648944 7.4:+40233197 MS.gene055181:CDS
GATTGTCAAGCCGAACTCAG+TGG 0.657456 7.4:+40233544 MS.gene055181:CDS
GAATCGTTCGCATATTAGGA+GGG 0.661237 7.4:+40234000 MS.gene055181:CDS
AGTCTTGCGATGGTTCCTAA+CGG 0.688922 7.4:-40233158 None:intergenic
TAACAATAATGCTTCACACG+AGG 0.697194 7.4:-40234176 None:intergenic
TGTCACCATTGGCATCAAGG+AGG 0.741971 7.4:+40234490 MS.gene055181:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAAGTTTCAAACTTTT+CGG + chr7.4:40234201-40234220 MS.gene055181:CDS 15.0%
!! AAAATAGAAAATGTAGAAGA+TGG - chr7.4:40234419-40234438 None:intergenic 20.0%
!!! ATCAATGTTAAGTTTAAGAT+TGG - chr7.4:40233336-40233355 None:intergenic 20.0%
!!! TAATAAGTTTCAAACTTTTC+GGG + chr7.4:40234202-40234221 MS.gene055181:CDS 20.0%
! AAAAGACATAAGTTCAGTAA+AGG + chr7.4:40233604-40233623 MS.gene055181:CDS 25.0%
! AATCTTCAGAAGAGTTATTT+GGG - chr7.4:40233307-40233326 None:intergenic 25.0%
! CTAGTTTATAGAAAATCAGA+TGG + chr7.4:40233903-40233922 MS.gene055181:CDS 25.0%
! GAATGATTAGTATTATGTAC+AGG + chr7.4:40233740-40233759 MS.gene055181:intron 25.0%
! TAATCTTCAGAAGAGTTATT+TGG - chr7.4:40233308-40233327 None:intergenic 25.0%
! TTCAACAAATAGAAACTGTA+TGG + chr7.4:40233430-40233449 MS.gene055181:CDS 25.0%
!! TTCTTGAAACACTTTAAGAA+AGG + chr7.4:40233479-40233498 MS.gene055181:CDS 25.0%
!!! AAATGATGATGGTTATATCA+AGG + chr7.4:40234346-40234365 MS.gene055181:CDS 25.0%
!!! AATGATGATGGTTATATCAA+GGG + chr7.4:40234347-40234366 MS.gene055181:CDS 25.0%
!!! TGCAAGTTTAATTTGAAGTA+AGG - chr7.4:40234137-40234156 None:intergenic 25.0%
AAATGAGTTCAAACAACCTA+TGG - chr7.4:40233216-40233235 None:intergenic 30.0%
AAGAAAATTGAACGACTCAA+AGG - chr7.4:40233464-40233483 None:intergenic 30.0%
AAGAAAGGATTTGTCAAAGA+AGG + chr7.4:40233494-40233513 MS.gene055181:CDS 30.0%
AAGAGAAAACACTTGAATTC+TGG - chr7.4:40233842-40233861 None:intergenic 30.0%
ACAAATAGAAACTGTATGGA+TGG + chr7.4:40233434-40233453 MS.gene055181:CDS 30.0%
ATCATTTCCTTTAGGTGATT+TGG - chr7.4:40234333-40234352 None:intergenic 30.0%
CTTAGTATGCTTCAGAATTA+TGG + chr7.4:40233578-40233597 MS.gene055181:CDS 30.0%
TAACCATCATCATTTCCTTT+AGG - chr7.4:40234341-40234360 None:intergenic 30.0%
TCATTTCCTTTAGGTGATTT+GGG - chr7.4:40234332-40234351 None:intergenic 30.0%
TTATATGGTAACAGATGACT+TGG + chr7.4:40234385-40234404 MS.gene055181:CDS 30.0%
! AACTTAACATTGATGACACT+CGG + chr7.4:40233342-40233361 MS.gene055181:CDS 30.0%
! AATTCCTCTTGATGATATGA+AGG + chr7.4:40234460-40234479 MS.gene055181:CDS 30.0%
! AGTTTTCTCACATTTCCATT+AGG + chr7.4:40233975-40233994 MS.gene055181:CDS 30.0%
! GAACTCATTTTATCAAAGTG+TGG + chr7.4:40233226-40233245 MS.gene055181:CDS 30.0%
! TTTTCATTAGCGATGAAGAT+AGG + chr7.4:40234246-40234265 MS.gene055181:CDS 30.0%
! TTTTCCTTCATATCATCAAG+AGG - chr7.4:40234467-40234486 None:intergenic 30.0%
!! AGATGGACTAAGAACTTATA+TGG + chr7.4:40234370-40234389 MS.gene055181:CDS 30.0%
!! CATAATTCTGAAGCATACTA+AGG - chr7.4:40233580-40233599 None:intergenic 30.0%
!! GATTGTTTCTGCATCAATAA+TGG + chr7.4:40233395-40233414 MS.gene055181:CDS 30.0%
AAATGGTCTTCGTCACTTAT+TGG + chr7.4:40234665-40234684 MS.gene055181:CDS 35.0%
AATCAAACCTGCAACATATG+AGG - chr7.4:40233379-40233398 None:intergenic 35.0%
ACACTTGAATTCTGGATCAA+TGG - chr7.4:40233834-40233853 None:intergenic 35.0%
CTCAGCAAATAAGACTTTGT+TGG - chr7.4:40233093-40233112 None:intergenic 35.0%
GCAGTTATGAGAAACATGTT+AGG + chr7.4:40234282-40234301 MS.gene055181:CDS 35.0%
TAACAATAATGCTTCACACG+AGG - chr7.4:40234179-40234198 None:intergenic 35.0%
TCACCTAAAGGAAATGATGA+TGG + chr7.4:40234335-40234354 MS.gene055181:CDS 35.0%
TCTCAACGTCACTAAAGAAA+AGG + chr7.4:40233634-40233653 MS.gene055181:CDS 35.0%
TGTTCTATGGGTAACATTGA+TGG + chr7.4:40234026-40234045 MS.gene055181:CDS 35.0%
TTCAAACAACCTATGGTAAC+AGG - chr7.4:40233209-40233228 None:intergenic 35.0%
TTTCTCACATTTCCATTAGG+AGG + chr7.4:40233978-40233997 MS.gene055181:CDS 35.0%
! ATTTGGGATGACTACTAACT+AGG - chr7.4:40234316-40234335 None:intergenic 35.0%
! CAACATATGAGGTACTTTGT+AGG - chr7.4:40233368-40233387 None:intergenic 35.0%
! TCTCTGACAGATTTGTTTCT+AGG + chr7.4:40233801-40233820 MS.gene055181:CDS 35.0%
!! AAGACTTGTTGATCCACATT+TGG + chr7.4:40234109-40234128 MS.gene055181:CDS 35.0%
!! CAACAAAGTCTTATTTGCTG+AGG + chr7.4:40233091-40233110 MS.gene055181:CDS 35.0%
AACATAGGACCTGTTACCAT+AGG + chr7.4:40233197-40233216 MS.gene055181:CDS 40.0%
AAGGAAAAGCTTGTCACCAT+TGG + chr7.4:40234479-40234498 MS.gene055181:CDS 40.0%
ACTTATTGGCCAATGTTGAG+GGG + chr7.4:40234679-40234698 MS.gene055181:CDS 40.0%
AGTCATCCCAAATCACCTAA+AGG + chr7.4:40234323-40234342 MS.gene055181:CDS 40.0%
AGTTTCTTGACATTGCCGTT+AGG + chr7.4:40233143-40233162 MS.gene055181:CDS 40.0%
ATTAGGAGGGAACTGTTCTA+TGG + chr7.4:40234013-40234032 MS.gene055181:CDS 40.0%
CACTTATTGGCCAATGTTGA+GGG + chr7.4:40234678-40234697 MS.gene055181:CDS 40.0%
GAAGATAGGAGTCGTGAATA+TGG + chr7.4:40234260-40234279 MS.gene055181:CDS 40.0%
GAATCGTTCGCATATTAGGA+GGG + chr7.4:40234000-40234019 MS.gene055181:CDS 40.0%
GATGACTACTAACTAGGTTC+AGG - chr7.4:40234310-40234329 None:intergenic 40.0%
GATGGTTATATCAAGGGAGA+TGG + chr7.4:40234353-40234372 MS.gene055181:CDS 40.0%
GCAGTGTCTGAGCATATTAA+AGG + chr7.4:40234614-40234633 MS.gene055181:intron 40.0%
GGCAAGATATTGTATGCTCA+AGG + chr7.4:40233924-40233943 MS.gene055181:CDS 40.0%
GTACAGAAGGACTCAAACAT+AGG + chr7.4:40233182-40233201 MS.gene055181:CDS 40.0%
TCACTTATTGGCCAATGTTG+AGG + chr7.4:40234677-40234696 MS.gene055181:CDS 40.0%
TCATCATCCGCTCTAACAAA+TGG + chr7.4:40234648-40234667 MS.gene055181:CDS 40.0%
TTAGGAGGGAACTGTTCTAT+GGG + chr7.4:40234014-40234033 MS.gene055181:CDS 40.0%
! ACGAAGACCATTTGTTAGAG+CGG - chr7.4:40234658-40234677 None:intergenic 40.0%
! CAAAGTACCTCATATGTTGC+AGG + chr7.4:40233369-40233388 MS.gene055181:CDS 40.0%
! TTGAAGTAAGGTGCCAAATG+TGG - chr7.4:40234125-40234144 None:intergenic 40.0%
!! AAAGTCTTATTTGCTGAGGC+TGG + chr7.4:40233095-40233114 MS.gene055181:CDS 40.0%
!! AAGTCTTATTTGCTGAGGCT+GGG + chr7.4:40233096-40233115 MS.gene055181:CDS 40.0%
!! ATTCTGAAGCATACTAAGGC+CGG - chr7.4:40233576-40233595 None:intergenic 40.0%
AGTCTTGCGATGGTTCCTAA+CGG - chr7.4:40233161-40233180 None:intergenic 45.0%
ATGCGAACGATTCCTCCTAA+TGG - chr7.4:40233993-40234012 None:intergenic 45.0%
CAAATCTGTCAGAGACGACT+TGG - chr7.4:40233796-40233815 None:intergenic 45.0%
CTTATTGGCCAATGTTGAGG+GGG + chr7.4:40234680-40234699 MS.gene055181:CDS 45.0%
GGAATCGTTCGCATATTAGG+AGG + chr7.4:40233999-40234018 MS.gene055181:CDS 45.0%
GGAGGAATCGTTCGCATATT+AGG + chr7.4:40233996-40234015 MS.gene055181:CDS 45.0%
TCTTACCTCCTTGATGCCAA+TGG - chr7.4:40234498-40234517 None:intergenic 45.0%
TTCACACGAGGCTCTTGAAT+AGG - chr7.4:40234167-40234186 None:intergenic 45.0%
CATCGCAAGACTCGTACAGA+AGG + chr7.4:40233169-40233188 MS.gene055181:CDS 50.0%
CCGAACTCAGTGGAATTCAC+CGG + chr7.4:40233554-40233573 MS.gene055181:CDS 50.0%
CCGGTGAATTCCACTGAGTT+CGG - chr7.4:40233557-40233576 None:intergenic 50.0%
CTCAGACACTGCAACAACAC+AGG - chr7.4:40234606-40234625 None:intergenic 50.0%
CTTCTGTACGAGTCTTGCGA+TGG - chr7.4:40233171-40233190 None:intergenic 50.0%
GATTGTCAAGCCGAACTCAG+TGG + chr7.4:40233544-40233563 MS.gene055181:CDS 50.0%
GCTTGTCACCATTGGCATCA+AGG + chr7.4:40234487-40234506 MS.gene055181:CDS 50.0%
GGCTGCTACTACTCAAACAG+AGG + chr7.4:40233031-40233050 MS.gene055181:CDS 50.0%
TGTCACCATTGGCATCAAGG+AGG + chr7.4:40234490-40234509 MS.gene055181:CDS 50.0%
! GCGAGTGCGACTGAAACTTT+TGG + chr7.4:40233055-40233074 MS.gene055181:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 40233029 40234707 40233029 ID=MS.gene055181
chr7.4 mRNA 40233029 40234707 40233029 ID=MS.gene055181.t1;Parent=MS.gene055181
chr7.4 exon 40233029 40233655 40233029 ID=MS.gene055181.t1.exon1;Parent=MS.gene055181.t1
chr7.4 CDS 40233029 40233655 40233029 ID=cds.MS.gene055181.t1;Parent=MS.gene055181.t1
chr7.4 exon 40233762 40234511 40233762 ID=MS.gene055181.t1.exon2;Parent=MS.gene055181.t1
chr7.4 CDS 40233762 40234511 40233762 ID=cds.MS.gene055181.t1;Parent=MS.gene055181.t1
chr7.4 exon 40234618 40234707 40234618 ID=MS.gene055181.t1.exon3;Parent=MS.gene055181.t1
chr7.4 CDS 40234618 40234707 40234618 ID=cds.MS.gene055181.t1;Parent=MS.gene055181.t1
Gene Sequence

>MS.gene055181

ATGGCTGCTACTACTCAAACAGAGGAGCGAGTGCGACTGAAACTTTTGGCGAACAAAGAAACCAACAAAGTCTTATTTGCTGAGGCTGGGAAAGACTTTGTCGATGTTCTATTTAGTTTCTTGACATTGCCGTTAGGAACCATCGCAAGACTCGTACAGAAGGACTCAAACATAGGACCTGTTACCATAGGTTGTTTGAACTCATTTTATCAAAGTGTGGTAGATCTCGACGAAGAGTGTATGCAGACTGAGACAAGCAAAGAAATGATATTACACCCAAATAACTCTTCTGAAGATTATTGCACCAATCTTAAACTTAACATTGATGACACTCGGCCTACAAAGTACCTCATATGTTGCAGGTTTGATTGTTTCTGCATCAATAATGGTTATTTCTACAATTCAACAAATAGAAACTGTATGGATGGAAAACCTTTGAGTCGTTCAATTTTCTTGAAACACTTTAAGAAAGGATTTGTCAAAGAAGGTGTTTCTTTTGTTATTTCTGATGATCTGATTGTCAAGCCGAACTCAGTGGAATTCACCGGCCTTAGTATGCTTCAGAATTATGGAATAAAAGACATAAGTTCAGTAAAGGAAATGACTCTCAACGTCACTAAAGAAAAGGTTATATATTTTATAGTTGTGTTCGCTAATTTGTTGCTTGCTTCACATACATCGCTTTTTAATTTTTGTCATAAATTCATTTTTGAATGATTAGTATTATGTACAGGTACTAGATCTTTTAAAGTGTGCTTTGCTTTCCAAGTCGTCTCTGACAGATTTGTTTCTAGGAAAGAAACCATTGATCCAGAATTCAAGTGTTTTCTCTTATAATGTTGCAAACAGTAGTAATATCAAAATCAGATTGAAGCTAGTTTATAGAAAATCAGATGGCAAGATATTGTATGCTCAAGGAGAAAAAGATTTTGCAGACTTGCTTTTAAGTTTTCTCACATTTCCATTAGGAGGAATCGTTCGCATATTAGGAGGGAACTGTTCTATGGGTAACATTGATGGTTTGTACAAGAGCATAGCTGATTTGCATGAAAACACATATTTGACAAGAGAAGCAAAGAAAAGACTTGTTGATCCACATTTGGCACCTTACTTCAAATTAAACTTGCAGATATTACCTATTCAAGAGCCTCGTGTGAAGCATTATTGTTACTATAATAAGTTTCAAACTTTTCGGGATAGTGTTATTCATAATCAATTTTTCATTAGCGATGAAGATAGGAGTCGTGAATATGGCAGTTATGAGAAACATGTTAGGTACCTGAACCTAGTTAGTAGTCATCCCAAATCACCTAAAGGAAATGATGATGGTTATATCAAGGGAGATGGACTAAGAACTTATATGGTAACAGATGACTTGGTCATTGCACCATCTTCTACATTTTCTATTTTACATTTAATCAACAATTTCAAAATTCCTCTTGATGATATGAAGGAAAAGCTTGTCACCATTGGCATCAAGGAGGTAAGAAAGAACATAATCTATTCATAGATCTATGTTTTGTGTTATTTTATTTGTTAGATTGATTGAATGTATTTACTGCTAACTATATATTCCTGTGTTGTTGCAGTGTCTGAGCATATTAAAGGCAGCTTTGTCGTCATCATCCGCTCTAACAAATGGTCTTCGTCACTTATTGGCCAATGTTGAGGGGGAGTAA
Protein sequence

>MS.gene055181.t1

MAATTQTEERVRLKLLANKETNKVLFAEAGKDFVDVLFSFLTLPLGTIARLVQKDSNIGPVTIGCLNSFYQSVVDLDEECMQTETSKEMILHPNNSSEDYCTNLKLNIDDTRPTKYLICCRFDCFCINNGYFYNSTNRNCMDGKPLSRSIFLKHFKKGFVKEGVSFVISDDLIVKPNSVEFTGLSMLQNYGIKDISSVKEMTLNVTKEKVLDLLKCALLSKSSLTDLFLGKKPLIQNSSVFSYNVANSSNIKIRLKLVYRKSDGKILYAQGEKDFADLLLSFLTFPLGGIVRILGGNCSMGNIDGLYKSIADLHENTYLTREAKKRLVDPHLAPYFKLNLQILPIQEPRVKHYCYYNKFQTFRDSVIHNQFFISDEDRSREYGSYEKHVRYLNLVSSHPKSPKGNDDGYIKGDGLRTYMVTDDLVIAPSSTFSILHLINNFKIPLDDMKEKLVTIGIKECLSILKAALSSSSALTNGLRHLLANVEGE