AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055258

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055258.t1 MTR_7g062300 82.415 472 62 3 1 451 1 472 0.0 769
MS.gene055258.t1 MTR_7g062280 79.184 490 67 3 5 459 3 492 0.0 758
MS.gene055258.t1 MTR_7g063920 65.546 476 108 4 1 459 1 437 0.0 576
MS.gene055258.t1 MTR_7g063840 55.975 477 178 9 8 459 5 474 5.03e-167 479
MS.gene055258.t1 MTR_7g063880 56.315 483 171 10 1 458 1 468 4.89e-166 476
MS.gene055258.t1 MTR_7g063660 54.792 480 177 5 11 459 8 478 2.53e-165 474
MS.gene055258.t1 MTR_7g063900 54.234 496 183 9 1 459 1 489 4.33e-162 467
MS.gene055258.t1 MTR_7g063900 27.490 251 149 8 13 243 253 490 5.36e-13 71.2
MS.gene055258.t1 MTR_7g063830 55.315 461 186 9 1 458 1 444 1.02e-157 454
MS.gene055258.t1 MTR_7g063820 53.878 490 190 8 1 459 1 485 9.56e-152 440
MS.gene055258.t1 MTR_3g007740 53.305 469 166 11 8 453 5 443 5.15e-143 417
MS.gene055258.t1 MTR_7g063890 52.881 486 188 9 9 458 24 504 4.43e-138 406
MS.gene055258.t1 MTR_7g063670 49.370 476 185 8 10 459 13 458 9.36e-137 401
MS.gene055258.t1 MTR_7g066570 41.176 493 236 11 4 456 6 484 2.20e-109 335
MS.gene055258.t1 MTR_7g066260 43.524 471 238 11 1 452 1 462 5.58e-107 326
MS.gene055258.t1 MTR_7g066410 39.921 506 240 8 12 454 10 514 6.03e-106 324
MS.gene055258.t1 MTR_7g066430 42.650 483 232 9 13 452 5 485 1.17e-105 323
MS.gene055258.t1 MTR_3g065200 43.516 455 181 10 12 439 3 408 1.78e-103 316
MS.gene055258.t1 MTR_7g066480 41.410 454 207 10 12 453 16 422 1.81e-98 302
MS.gene055258.t1 MTR_7g066340 39.446 469 251 11 1 452 1 453 2.34e-97 301
MS.gene055258.t1 MTR_7g012680 40.580 483 232 12 1 459 1 452 1.26e-95 296
MS.gene055258.t1 MTR_7g058710 37.200 500 257 13 1 459 1 484 5.20e-95 295
MS.gene055258.t1 MTR_7g066360 42.827 467 222 12 2 448 4 445 6.50e-92 287
MS.gene055258.t1 MTR_7g066350 39.130 460 248 11 11 454 8 451 1.14e-91 286
MS.gene055258.t1 MTR_7g066490 41.333 450 197 11 12 452 16 407 8.02e-91 282
MS.gene055258.t1 MTR_7g066290 40.517 464 226 10 3 452 6 433 1.15e-90 282
MS.gene055258.t1 MTR_7g066580 38.983 472 208 12 24 452 7 441 2.12e-88 277
MS.gene055258.t1 MTR_7g066580 28.205 234 147 9 11 230 214 440 1.71e-11 66.2
MS.gene055258.t1 MTR_7g062270 71.038 183 52 1 6 187 3 185 8.48e-87 271
MS.gene055258.t1 MTR_1g041315 36.543 457 257 9 3 436 5 451 6.39e-86 272
MS.gene055258.t1 MTR_7g066400 36.730 471 249 10 1 454 1 439 5.18e-85 268
MS.gene055258.t1 MTR_7g063720 54.506 233 97 4 235 459 2 233 4.63e-78 243
MS.gene055258.t1 MTR_7g063720 31.364 220 123 9 14 229 25 220 3.60e-19 87.0
MS.gene055258.t1 MTR_7g058700 37.418 457 206 11 24 459 531 928 1.59e-76 257
MS.gene055258.t1 MTR_4g019310 34.462 502 275 14 6 459 2 497 8.99e-73 238
MS.gene055258.t1 MTR_7g066310 34.375 448 218 8 11 452 6 383 1.15e-72 235
MS.gene055258.t1 MTR_7g063850 43.631 314 114 9 182 458 1 288 1.05e-64 211
MS.gene055258.t1 MTR_2g029400 31.770 469 221 7 2 440 4 403 2.19e-64 213
MS.gene055258.t1 MTR_2g029400 30.233 215 111 8 255 459 14 199 2.49e-13 72.0
MS.gene055258.t1 MTR_4g017830 31.061 528 273 14 1 458 1 507 4.04e-58 200
MS.gene055258.t1 MTR_4g017410 32.806 506 269 20 6 458 3 490 1.53e-56 195
MS.gene055258.t1 MTR_4g017440 30.948 517 277 16 6 458 8 508 4.37e-53 186
MS.gene055258.t1 MTR_4g019340 32.075 477 261 16 13 440 39 501 1.71e-51 182
MS.gene055258.t1 MTR_4g019340 31.416 226 120 11 10 224 301 502 1.40e-14 76.3
MS.gene055258.t1 MTR_7g063690 40.702 285 100 6 3 282 2 222 3.42e-51 174
MS.gene055258.t1 MTR_4g017610 30.924 498 266 15 5 448 2 475 1.04e-50 179
MS.gene055258.t1 MTR_7g066280 31.450 407 217 8 91 452 1 390 2.57e-48 171
MS.gene055258.t1 MTR_4g017470 28.820 517 268 14 1 458 1 476 1.94e-47 171
MS.gene055258.t1 MTR_1g014060 45.631 206 104 6 21 222 9 210 2.60e-46 165
MS.gene055258.t1 MTR_1g014060 40.323 186 96 2 285 459 210 391 2.77e-30 121
MS.gene055258.t1 MTR_1g014060 31.019 216 112 8 268 452 13 222 1.89e-13 72.0
MS.gene055258.t1 MTR_7g100420 37.618 319 161 5 156 448 87 393 9.30e-46 164
MS.gene055258.t1 MTR_7g100420 64.815 54 11 1 13 58 40 93 1.51e-11 66.2
MS.gene055258.t1 MTR_7g066680 34.899 298 133 5 212 448 37 334 3.62e-42 153
MS.gene055258.t1 MTR_7g066680 26.512 215 144 8 6 214 80 286 9.66e-12 66.6
MS.gene055258.t1 MTR_4g017550 30.882 476 233 19 42 448 21 469 2.56e-37 142
MS.gene055258.t1 MTR_4g017550 30.638 235 128 9 13 228 248 466 9.14e-16 79.7
MS.gene055258.t1 MTR_8g023240 26.514 479 282 12 9 446 34 483 1.50e-34 136
MS.gene055258.t1 MTR_8g445860 32.653 245 139 8 3 235 8 238 8.88e-25 102
MS.gene055258.t1 MTR_0150s0010 32.780 241 145 5 5 234 3 237 5.82e-24 100
MS.gene055258.t1 MTR_1g115440 31.746 252 140 10 1 234 1 238 4.80e-23 97.8
MS.gene055258.t1 MTR_7g063760 52.703 74 34 1 387 459 1 74 1.20e-20 86.3
MS.gene055258.t1 MTR_7g066390 57.534 73 31 0 380 452 50 122 1.43e-18 82.8
MS.gene055258.t1 MTR_2g067310 34.270 178 77 5 18 195 53 190 2.46e-17 81.6
MS.gene055258.t1 MTR_1g115455 27.935 247 152 7 1 235 1 233 1.14e-14 73.6
MS.gene055258.t1 MTR_7g063870 55.357 56 25 0 6 61 25 80 9.29e-13 68.6
MS.gene055258.t1 MTR_7g063870 36.719 128 65 4 138 256 75 195 9.92e-13 68.6
MS.gene055258.t1 MTR_1g115450 36.090 133 71 5 3 133 2 122 1.45e-12 65.5
MS.gene055258.t1 MTR_1g115470 39.048 105 56 3 14 116 8 106 1.31e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055258.t1 AT3G09140 31.765 510 277 15 1 454 1 495 1.55e-61 208
MS.gene055258.t1 AT5G01120 33.065 496 258 16 13 451 10 488 2.15e-60 206
MS.gene055258.t1 AT5G01120 27.234 235 144 6 7 228 262 482 2.41e-11 66.2
MS.gene055258.t1 AT5G01150 31.579 494 271 13 14 458 11 486 1.19e-59 203
MS.gene055258.t1 AT5G01130 32.112 464 276 11 13 459 10 451 2.52e-56 193
MS.gene055258.t1 AT5G01130 25.909 220 140 6 249 446 3 221 7.65e-12 67.4
MS.gene055258.t1 AT3G09140 30.112 538 277 16 1 454 1 523 2.89e-56 195
MS.gene055258.t1 AT5G01140 29.675 492 276 11 3 459 2 458 2.32e-53 186
MS.gene055258.t1 AT5G43240 31.643 493 267 11 13 448 10 489 4.80e-53 186
MS.gene055258.t1 AT5G43240 31.643 493 267 11 13 448 10 489 4.80e-53 186
MS.gene055258.t1 AT5G43240 31.643 493 267 11 13 448 10 489 4.80e-53 186
MS.gene055258.t1 AT3G09110 35.127 316 192 6 14 320 11 322 5.14e-52 179
MS.gene055258.t1 AT3G09120 36.223 323 168 8 11 309 5 313 6.99e-48 167
MS.gene055258.t1 AT5G37320 28.600 493 280 15 13 454 10 481 1.04e-40 152
MS.gene055258.t1 AT5G43240 28.000 325 181 7 167 448 31 345 1.61e-17 84.3

Find 85 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGAATTGTTCGAATATT+TGG 0.115220 7.4:-41431649 MS.gene055258:CDS
AAACTAGCTTCAGAATAATT+TGG 0.145102 7.4:+41431758 None:intergenic
TTTAGTCTGTTCAAGGAATT+TGG 0.172599 7.4:-41432050 MS.gene055258:CDS
AGGAAAACTTGATCTGTAAA+AGG 0.264307 7.4:+41432167 None:intergenic
CCTGGTGTTCAAGAATATTA+TGG 0.266315 7.4:-41431466 MS.gene055258:CDS
TTCACATGTTTCTACTTTAG+TGG 0.287465 7.4:-41432254 MS.gene055258:CDS
GTATTTCGCTACAGATGATT+TGG 0.304476 7.4:-41431359 MS.gene055258:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.4:+41431319 None:intergenic
CTTGTATAATCAATACAGTT+TGG 0.351386 7.4:+41432074 None:intergenic
TGAACACCAGGTTCAAGAAT+TGG 0.359482 7.4:+41431478 None:intergenic
ATTGACTCCAATTTCAGCTT+TGG 0.362521 7.4:-41431326 MS.gene055258:CDS
TTGACTCCAATTTCAGCTTT+GGG 0.364093 7.4:-41431325 MS.gene055258:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.4:+41432568 None:intergenic
TACTCCTCTTAATGATTTGA+AGG 0.368693 7.4:-41431284 MS.gene055258:CDS
TTCTGTGATGTTGAAATTAG+TGG 0.377162 7.4:-41431787 MS.gene055258:CDS
TACAAGCTTTAGTCTGTTCA+AGG 0.384290 7.4:-41432057 MS.gene055258:CDS
AAGAAAATGAATTTATCTAC+TGG 0.389160 7.4:-41431421 MS.gene055258:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.4:-41432471 MS.gene055258:CDS
ATCTGCACTAACAAATGGTT+TGG 0.399886 7.4:-41431067 MS.gene055258:CDS
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.4:-41432488 MS.gene055258:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7.4:-41432536 MS.gene055258:CDS
GCTTTCCAAGTCAACTTTGA+CGG 0.423899 7.4:-41431857 MS.gene055258:CDS
TCACATGTTAACTGAAGTTA+AGG 0.428371 7.4:-41431043 MS.gene055258:CDS
GCAGTGTCTTAGCATATTGA+AGG 0.430801 7.4:-41431106 MS.gene055258:intron
AACCATCCCTTGAGAGATCA+AGG 0.434730 7.4:-41431816 MS.gene055258:CDS
TACACCATTAACAAATCCTT+GGG 0.434973 7.4:+41432133 None:intergenic
TAATCTTCCGCTGAGTTGAT+TGG 0.438608 7.4:+41432326 None:intergenic
TTTGGAGAGAATTGTTCCTT+TGG 0.438718 7.4:-41431631 MS.gene055258:CDS
CAAATCCGTCAAAGTTGACT+TGG 0.454131 7.4:+41431852 None:intergenic
TCTGAATGTCACCAAAGAAA+AGG 0.469867 7.4:-41431994 MS.gene055258:intron
TAAATATTTGATATCAATAG+AGG 0.470147 7.4:-41431563 MS.gene055258:CDS
TCAATATCTGCACTAACAAA+TGG 0.474736 7.4:-41431072 MS.gene055258:CDS
CTACACCATTAACAAATCCT+TGG 0.482540 7.4:+41432132 None:intergenic
AAAGCTGAAATTGGAGTCAA+TGG 0.488614 7.4:+41431328 None:intergenic
GGAACCATTGCGAGATTGGT+AGG 0.492154 7.4:-41432467 MS.gene055258:CDS
TCCTTGTGAGGGTTATGTCA+AGG 0.492200 7.4:-41431392 MS.gene055258:CDS
TACTGGGGTGATTCCTTGTG+AGG 0.493234 7.4:-41431404 MS.gene055258:CDS
TTTCTTACATTTCCTTTGGG+TGG 0.496782 7.4:-41431667 MS.gene055258:CDS
CTTGCTTAACTTCAACTGTC+GGG 0.500708 7.4:+41431510 None:intergenic
AGAAAATGAATTTATCTACT+GGG 0.502644 7.4:-41431420 MS.gene055258:CDS
CCATAATATTCTTGAACACC+AGG 0.509271 7.4:+41431466 None:intergenic
AGATAAACCTTGATCTCTCA+AGG 0.510599 7.4:+41431809 None:intergenic
AAACATGTGAAGTACTTTGT+TGG 0.513317 7.4:+41432266 None:intergenic
CATTAAGAGGAGTATTCAAT+CGG 0.515584 7.4:+41431293 None:intergenic
AACAAGGTATTGTATGCTCA+AGG 0.521643 7.4:-41431721 MS.gene055258:CDS
GGTTCAAGAATTGGTAATAC+CGG 0.523045 7.4:+41431487 None:intergenic
CCTTGTGAGGGTTATGTCAA+GGG 0.527421 7.4:-41431391 MS.gene055258:CDS
CAAGGTATTGTATGCTCAAG+GGG 0.532821 7.4:-41431719 MS.gene055258:CDS
TATCAATAGAGGCTAAGAAC+AGG 0.537740 7.4:-41431552 MS.gene055258:CDS
CTTGTTTGCAGAAGCAGGGA+AGG 0.539743 7.4:-41432531 MS.gene055258:CDS
GCTTGCTTAACTTCAACTGT+CGG 0.540183 7.4:+41431509 None:intergenic
GTATTACCAATTCTTGAACC+TGG 0.545232 7.4:-41431484 MS.gene055258:CDS
TTCAACTGTCGGGCAATGCA+AGG 0.551435 7.4:+41431520 None:intergenic
AACCTTGATCTCTCAAGGGA+TGG 0.552278 7.4:+41431814 None:intergenic
CCCTAGTTCGGTAAAAGAAG+TGG 0.558153 7.4:-41432018 MS.gene055258:CDS
TCTGTAGCGAAATACATAGC+TGG 0.560345 7.4:+41431367 None:intergenic
AGTTATCACAATCGGAGTCA+AGG 0.562616 7.4:-41431257 MS.gene055258:CDS
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7.4:-41432535 MS.gene055258:CDS
GAAAATGAATTTATCTACTG+GGG 0.577208 7.4:-41431419 MS.gene055258:CDS
TGTTCCTTTGGAAGCATCAG+CGG 0.578272 7.4:-41431619 MS.gene055258:CDS
GAACCATTGCGAGATTGGTA+GGG 0.578479 7.4:-41432466 MS.gene055258:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.4:+41432473 None:intergenic
AGCATAGGGCAAGTTACAGT+CGG 0.590026 7.4:-41432434 MS.gene055258:CDS
ACTGGGGTGATTCCTTGTGA+GGG 0.590492 7.4:-41431403 MS.gene055258:CDS
TAGGGAAGGAATCTAGCATA+GGG 0.592087 7.4:-41432448 MS.gene055258:CDS
ACAAGGTATTGTATGCTCAA+GGG 0.592568 7.4:-41431720 MS.gene055258:CDS
TGAAGTGATCATATCGCGAT+AGG 0.592584 7.4:+41432226 None:intergenic
GTAGGGAAGGAATCTAGCAT+AGG 0.592587 7.4:-41432449 MS.gene055258:CDS
CATGTTAACTGAAGTTAAGG+AGG 0.596174 7.4:-41431040 MS.gene055258:CDS
CTTCCCTACCAATCTCGCAA+TGG 0.599784 7.4:+41432463 None:intergenic
CATTGCGAGATTGGTAGGGA+AGG 0.607333 7.4:-41432462 MS.gene055258:CDS
TTTAAGAAAATCAGATAACA+AGG 0.611339 7.4:-41431737 MS.gene055258:CDS
ACAGTTGAAGTTAAGCAAGC+CGG 0.618213 7.4:-41431506 MS.gene055258:CDS
GATAAACCTTGATCTCTCAA+GGG 0.631373 7.4:+41431810 None:intergenic
CCCTTGACATAACCCTCACA+AGG 0.637522 7.4:+41431391 None:intergenic
GATAAACATAAATGTCGATG+TGG 0.637729 7.4:-41432194 MS.gene055258:CDS
ATTCGAACAATTCCACCCAA+AGG 0.640069 7.4:+41431655 None:intergenic
CAATCCGCTGATGCTTCCAA+AGG 0.653547 7.4:+41431615 None:intergenic
AAACTCACTCTATAGAAGTG+TGG 0.661607 7.4:-41432405 MS.gene055258:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.672765 7.4:-41432389 MS.gene055258:CDS
TGAAGGTTGTTTCTGTACTG+AGG 0.673178 7.4:-41432372 MS.gene055258:CDS
CACCATTAACAAATCCTTGG+GGG 0.679874 7.4:+41432135 None:intergenic
ACACCATTAACAAATCCTTG+GGG 0.695095 7.4:+41432134 None:intergenic
TATCACAATCGGAGTCAAGG+AGG 0.711974 7.4:-41431254 MS.gene055258:intron
GCTGCAACCAATCAACTCAG+CGG 0.749919 7.4:-41432333 MS.gene055258:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTAATATAAATTTTACTA+TGG + chr7.4:41432416-41432435 None:intergenic 10.0%
!! TAAATATTTGATATCAATAG+AGG - chr7.4:41432077-41432096 MS.gene055258:CDS 15.0%
!!! ACTATTTTATATATACATAC+AGG - chr7.4:41431735-41431754 MS.gene055258:CDS 15.0%
!! AAGAAAATGAATTTATCTAC+TGG - chr7.4:41432219-41432238 MS.gene055258:CDS 20.0%
!! AGAAAATGAATTTATCTACT+GGG - chr7.4:41432220-41432239 MS.gene055258:CDS 20.0%
!! TTTAAGAAAATCAGATAACA+AGG - chr7.4:41431903-41431922 MS.gene055258:intron 20.0%
! AAGGAAAAAGTTATCACAAT+CGG - chr7.4:41432375-41432394 MS.gene055258:CDS 25.0%
! CTTGTATAATCAATACAGTT+TGG + chr7.4:41431569-41431588 None:intergenic 25.0%
! GAAAATGAATTTATCTACTG+GGG - chr7.4:41432221-41432240 MS.gene055258:CDS 25.0%
!! AAACTAGCTTCAGAATAATT+TGG + chr7.4:41431885-41431904 None:intergenic 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.4:41431077-41431096 MS.gene055258:CDS 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG - chr7.4:41431969-41431988 MS.gene055258:intron 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7.4:41431970-41431989 MS.gene055258:intron 25.0%
!! TTTTCCTTCAAATCATTAAG+AGG + chr7.4:41432363-41432382 None:intergenic 25.0%
AGGAAAACTTGATCTGTAAA+AGG + chr7.4:41431476-41431495 None:intergenic 30.0%
ATTTAAATGTTCTACGCGTA+GGG - chr7.4:41432452-41432471 MS.gene055258:CDS 30.0%
GATAAACATAAATGTCGATG+TGG - chr7.4:41431446-41431465 MS.gene055258:CDS 30.0%
TACACCATTAACAAATCCTT+GGG + chr7.4:41431510-41431529 None:intergenic 30.0%
TACTCCTCTTAATGATTTGA+AGG - chr7.4:41432356-41432375 MS.gene055258:CDS 30.0%
TATTTAAATGTTCTACGCGT+AGG - chr7.4:41432451-41432470 MS.gene055258:CDS 30.0%
TCAATATCTGCACTAACAAA+TGG - chr7.4:41432568-41432587 MS.gene055258:CDS 30.0%
TCACATGTTAACTGAAGTTA+AGG - chr7.4:41432597-41432616 MS.gene055258:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.4:41431075-41431094 None:intergenic 30.0%
TTCTGTGATGTTGAAATTAG+TGG - chr7.4:41431853-41431872 MS.gene055258:CDS 30.0%
TTTAGTCTGTTCAAGGAATT+TGG - chr7.4:41431590-41431609 MS.gene055258:CDS 30.0%
! AAACATGTGAAGTACTTTGT+TGG + chr7.4:41431377-41431396 None:intergenic 30.0%
! AAAGCACAAAACCTTTTCTT+TGG + chr7.4:41431660-41431679 None:intergenic 30.0%
! TTCACATGTTTCTACTTTAG+TGG - chr7.4:41431386-41431405 MS.gene055258:CDS 30.0%
!! CATTAAGAGGAGTATTCAAT+CGG + chr7.4:41432350-41432369 None:intergenic 30.0%
AAACTCACTCTATAGAAGTG+TGG - chr7.4:41431235-41431254 MS.gene055258:intron 35.0%
AAAGCTGAAATTGGAGTCAA+TGG + chr7.4:41432315-41432334 None:intergenic 35.0%
ACACCATTAACAAATCCTTG+GGG + chr7.4:41431509-41431528 None:intergenic 35.0%
AGATAAACCTTGATCTCTCA+AGG + chr7.4:41431834-41431853 None:intergenic 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7.4:41431152-41431171 MS.gene055258:intron 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.4:41432324-41432343 None:intergenic 35.0%
ATCTGCACTAACAAATGGTT+TGG - chr7.4:41432573-41432592 MS.gene055258:CDS 35.0%
CATGTTAACTGAAGTTAAGG+AGG - chr7.4:41432600-41432619 MS.gene055258:CDS 35.0%
CCATAATATTCTTGAACACC+AGG + chr7.4:41432177-41432196 None:intergenic 35.0%
CCTGGTGTTCAAGAATATTA+TGG - chr7.4:41432174-41432193 MS.gene055258:CDS 35.0%
CTACACCATTAACAAATCCT+TGG + chr7.4:41431511-41431530 None:intergenic 35.0%
GATAAACCTTGATCTCTCAA+GGG + chr7.4:41431833-41431852 None:intergenic 35.0%
GGTGGAATTGTTCGAATATT+TGG - chr7.4:41431991-41432010 MS.gene055258:intron 35.0%
GTATTACCAATTCTTGAACC+TGG - chr7.4:41432156-41432175 MS.gene055258:CDS 35.0%
GTATTTCGCTACAGATGATT+TGG - chr7.4:41432281-41432300 MS.gene055258:CDS 35.0%
TATCAATAGAGGCTAAGAAC+AGG - chr7.4:41432088-41432107 MS.gene055258:CDS 35.0%
TCTGAATGTCACCAAAGAAA+AGG - chr7.4:41431646-41431665 MS.gene055258:CDS 35.0%
TGGCATAAAAAACCCTAGTT+CGG - chr7.4:41431610-41431629 MS.gene055258:CDS 35.0%
TTGACTCCAATTTCAGCTTT+GGG - chr7.4:41432315-41432334 MS.gene055258:CDS 35.0%
TTTCTTACATTTCCTTTGGG+TGG - chr7.4:41431973-41431992 MS.gene055258:intron 35.0%
TTTGGAGAGAATTGTTCCTT+TGG - chr7.4:41432009-41432028 MS.gene055258:CDS 35.0%
! ATTGACTCCAATTTCAGCTT+TGG - chr7.4:41432314-41432333 MS.gene055258:CDS 35.0%
! GGTTCAAGAATTGGTAATAC+CGG + chr7.4:41432156-41432175 None:intergenic 35.0%
! TACAAGCTTTAGTCTGTTCA+AGG - chr7.4:41431583-41431602 MS.gene055258:CDS 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7.4:41431919-41431938 MS.gene055258:intron 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7.4:41431920-41431939 MS.gene055258:intron 35.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.4:41431170-41431189 None:intergenic 40.0%
ACAGTTGAAGTTAAGCAAGC+CGG - chr7.4:41432134-41432153 MS.gene055258:CDS 40.0%
AGTTATCACAATCGGAGTCA+AGG - chr7.4:41432383-41432402 MS.gene055258:CDS 40.0%
ATTCGAACAATTCCACCCAA+AGG + chr7.4:41431988-41432007 None:intergenic 40.0%
CAAATCCGTCAAAGTTGACT+TGG + chr7.4:41431791-41431810 None:intergenic 40.0%
CACCATTAACAAATCCTTGG+GGG + chr7.4:41431508-41431527 None:intergenic 40.0%
CTTGCTTAACTTCAACTGTC+GGG + chr7.4:41432133-41432152 None:intergenic 40.0%
GCAGTGTCTTAGCATATTGA+AGG - chr7.4:41432534-41432553 MS.gene055258:CDS 40.0%
GCTTGCTTAACTTCAACTGT+CGG + chr7.4:41432134-41432153 None:intergenic 40.0%
GCTTTCCAAGTCAACTTTGA+CGG - chr7.4:41431783-41431802 MS.gene055258:CDS 40.0%
TAGGGAAGGAATCTAGCATA+GGG - chr7.4:41431192-41431211 MS.gene055258:intron 40.0%
TCAAACTAGTCCACCGAAAT+TGG + chr7.4:41432482-41432501 None:intergenic 40.0%
TCTGTAGCGAAATACATAGC+TGG + chr7.4:41432276-41432295 None:intergenic 40.0%
TGAACACCAGGTTCAAGAAT+TGG + chr7.4:41432165-41432184 None:intergenic 40.0%
TGAAGTGATCATATCGCGAT+AGG + chr7.4:41431417-41431436 None:intergenic 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.4:41431169-41431188 MS.gene055258:intron 40.0%
! ACCACTTCTTTTACCGAACT+AGG + chr7.4:41431626-41431645 None:intergenic 40.0%
! CCACTTCTTTTACCGAACTA+GGG + chr7.4:41431625-41431644 None:intergenic 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.4:41431104-41431123 MS.gene055258:CDS 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG - chr7.4:41431105-41431124 MS.gene055258:CDS 40.0%
!! CAAGGTATTGTATGCTCAAG+GGG - chr7.4:41431921-41431940 MS.gene055258:intron 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG + chr7.4:41431317-41431336 None:intergenic 40.0%
!! TGAAGGTTGTTTCTGTACTG+AGG - chr7.4:41431268-41431287 MS.gene055258:CDS 40.0%
AACCATCCCTTGAGAGATCA+AGG - chr7.4:41431824-41431843 MS.gene055258:CDS 45.0%
AACCTTGATCTCTCAAGGGA+TGG + chr7.4:41431829-41431848 None:intergenic 45.0%
AGCATAGGGCAAGTTACAGT+CGG - chr7.4:41431206-41431225 MS.gene055258:intron 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7.4:41431251-41431270 MS.gene055258:intron 45.0%
ATCCTTGGGGGAGAGATTTA+AGG + chr7.4:41431496-41431515 None:intergenic 45.0%
CCCTAGTTCGGTAAAAGAAG+TGG - chr7.4:41431622-41431641 MS.gene055258:CDS 45.0%
CCTTGTGAGGGTTATGTCAA+GGG - chr7.4:41432249-41432268 MS.gene055258:CDS 45.0%
GAACCATTGCGAGATTGGTA+GGG - chr7.4:41431174-41431193 MS.gene055258:intron 45.0%
GTAGGGAAGGAATCTAGCAT+AGG - chr7.4:41431191-41431210 MS.gene055258:intron 45.0%
TATCACAATCGGAGTCAAGG+AGG - chr7.4:41432386-41432405 MS.gene055258:CDS 45.0%
TCCTTGTGAGGGTTATGTCA+AGG - chr7.4:41432248-41432267 MS.gene055258:CDS 45.0%
TTCCTTAAATCTCTCCCCCA+AGG - chr7.4:41431491-41431510 MS.gene055258:CDS 45.0%
!! CTCCCCCAAGGATTTGTTAA+TGG - chr7.4:41431503-41431522 MS.gene055258:CDS 45.0%
!! TGTTCCTTTGGAAGCATCAG+CGG - chr7.4:41432021-41432040 MS.gene055258:CDS 45.0%
ACTGGGGTGATTCCTTGTGA+GGG - chr7.4:41432237-41432256 MS.gene055258:CDS 50.0%
CAATCCGCTGATGCTTCCAA+AGG + chr7.4:41432028-41432047 None:intergenic 50.0%
CATTGCGAGATTGGTAGGGA+AGG - chr7.4:41431178-41431197 MS.gene055258:intron 50.0%
CCCTTGACATAACCCTCACA+AGG + chr7.4:41432252-41432271 None:intergenic 50.0%
CTTCCCTACCAATCTCGCAA+TGG + chr7.4:41431180-41431199 None:intergenic 50.0%
CTTGTTTGCAGAAGCAGGGA+AGG - chr7.4:41431109-41431128 MS.gene055258:intron 50.0%
GCTGCAACCAATCAACTCAG+CGG - chr7.4:41431307-41431326 MS.gene055258:CDS 50.0%
GGAACCATTGCGAGATTGGT+AGG - chr7.4:41431173-41431192 MS.gene055258:intron 50.0%
TACTGGGGTGATTCCTTGTG+AGG - chr7.4:41432236-41432255 MS.gene055258:CDS 50.0%
TTCAACTGTCGGGCAATGCA+AGG + chr7.4:41432123-41432142 None:intergenic 50.0%
CGCGTAGGGCGTGCCAATTT+CGG - chr7.4:41432466-41432485 MS.gene055258:CDS 60.0%
GTAGGGCGTGCCAATTTCGG+TGG - chr7.4:41432469-41432488 MS.gene055258:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 41431032 41432630 41431032 ID=MS.gene055258
chr7.4 mRNA 41431032 41432630 41431032 ID=MS.gene055258.t1;Parent=MS.gene055258
chr7.4 exon 41431995 41432630 41431995 ID=MS.gene055258.t1.exon1;Parent=MS.gene055258.t1
chr7.4 CDS 41431995 41432630 41431995 ID=cds.MS.gene055258.t1;Parent=MS.gene055258.t1
chr7.4 exon 41431255 41431905 41431255 ID=MS.gene055258.t1.exon2;Parent=MS.gene055258.t1
chr7.4 CDS 41431255 41431905 41431255 ID=cds.MS.gene055258.t1;Parent=MS.gene055258.t1
chr7.4 exon 41431032 41431124 41431032 ID=MS.gene055258.t1.exon3;Parent=MS.gene055258.t1
chr7.4 CDS 41431032 41431124 41431032 ID=cds.MS.gene055258.t1;Parent=MS.gene055258.t1
Gene Sequence

>MS.gene055258

ATGGCTGCTACTACTTCTACTCAAGCAGACGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTTGACATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGGGAAGGAATCTAGCATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAGAAGTGTGGCAGATCTTGATGAAGGTTGTTTCTGTACTGAGGCAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATTGCAACACTCTTAAACTCAACATTGATGACAATCAACCAACAAAGTACTTCACATGTTTCTACTTTAGTGGTTGCTCCTATCGCGATATGATCACTTCAACGTATAAAGATAAACATAAATGTCGATGTGGTCGTCCTTTTACAGATCAAGTTTTCCTTAAATCTCTCCCCCAAGGATTTGTTAATGGTGTAGCTACTTTTGTCATAACTGATGATCTCACTATCAAGCCAAACTGTATTGATTATACAAGCTTTAGTCTGTTCAAGGAATTTGGCATAAAAAACCCTAGTTCGGTAAAAGAAGTGGTTCTGAATGTCACCAAAGAAAAGGTTTTGTGCTTTAATATGTTTGTTCATAACTTCTCTCTTAAATTTTTGATTGATTATAATTACTATTACTATTTTATATATACATACAGGTACTTGATCTGCTTAAATGTTCTTTGCTTTCCAAGTCAACTTTGACGGATTTGTTTCTAGAGAAGAAACCATCCCTTGAGAGATCAAGGTTTATCTTCTGTGATGTTGAAATTAGTGGCAATATCCAAATTATTCTGAAGCTAGTTTTAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGGAACAAGATTTTGCGAATTTACTTTTAAGTTTTCTTACATTTCCTTTGGGTGGAATTGTTCGAATATTTGGAGAGAATTGTTCCTTTGGAAGCATCAGCGGATTGTACAAGAGTATCGTTGAGTTGAATGAAAATAAATATTTGATATCAATAGAGGCTAAGAACAGGCTTGCTGATCCTTGCATTGCCCGACAGTTGAAGTTAAGCAAGCCGGTATTACCAATTCTTGAACCTGGTGTTCAAGAATATTATGGTTATGTTGAAAGTAATAGTATTAAGAAAATGAATTTATCTACTGGGGTGATTCCTTGTGAGGGTTATGTCAAGGGTCCAGCTATGTATTTCGCTACAGATGATTTGGTTGTAGCACCATTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTGAATACTCCTCTTAATGATTTGAAGGAAAAAGTTATCACAATCGGAGTCAAGGAGGTAAACCATAGTAAAATTTATATTAGATTTTTAATCTTAAGTTTATTTAAATGTTCTACGCGTAGGGCGTGCCAATTTCGGTGGACTAGTTTGACTCTTAAAAAATAAAATGCTTATTGTCTTGTTGCAGTGTCTTAGCATATTGAAGGCTTCTTTGACATCAATATCTGCACTAACAAATGGTTTGGCTCACATGTTAACTGAAGTTAAGGAGGAGAAATGA
Protein sequence

>MS.gene055258.t1

MAATTSTQADEHVSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVGKESSIGQVTVGCLNSLYRSVADLDEGCFCTEAIKQMLLQPINSAEDYCNTLKLNIDDNQPTKYFTCFYFSGCSYRDMITSTYKDKHKCRCGRPFTDQVFLKSLPQGFVNGVATFVITDDLTIKPNCIDYTSFSLFKEFGIKNPSSVKEVVLNVTKEKVLDLLKCSLLSKSTLTDLFLEKKPSLERSRFIFCDVEISGNIQIILKLVLRKSDNKVLYAQGEQDFANLLLSFLTFPLGGIVRIFGENCSFGSISGLYKSIVELNENKYLISIEAKNRLADPCIARQLKLSKPVLPILEPGVQEYYGYVESNSIKKMNLSTGVIPCEGYVKGPAMYFATDDLVVAPLTPISALGLLNRLNTPLNDLKEKVITIGVKECLSILKASLTSISALTNGLAHMLTEVKEEK