AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene99613

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99613.t1 MTR_7g062280 68.293 492 131 5 5 473 3 492 0.0 642
MS.gene99613.t1 MTR_7g063920 70.798 476 97 4 1 473 1 437 0.0 637
MS.gene99613.t1 MTR_7g062300 69.915 472 135 4 1 465 1 472 0.0 637
MS.gene99613.t1 MTR_7g063840 54.927 477 197 7 8 473 5 474 4.69e-166 477
MS.gene99613.t1 MTR_7g063880 55.876 485 184 9 1 472 1 468 4.42e-160 462
MS.gene99613.t1 MTR_7g063900 54.092 501 190 12 1 473 1 489 2.33e-157 455
MS.gene99613.t1 MTR_7g063660 52.165 485 204 7 7 473 4 478 1.30e-154 448
MS.gene99613.t1 MTR_7g063820 52.314 497 201 11 1 473 1 485 3.19e-148 432
MS.gene99613.t1 MTR_7g063830 52.830 477 187 10 1 472 1 444 5.99e-147 427
MS.gene99613.t1 MTR_3g007740 54.219 474 168 10 8 467 5 443 3.00e-145 423
MS.gene99613.t1 MTR_7g063670 52.510 478 181 10 10 473 13 458 3.77e-142 416
MS.gene99613.t1 MTR_7g063890 52.263 486 205 9 9 472 24 504 8.65e-133 393
MS.gene99613.t1 MTR_7g066570 40.779 488 259 6 4 470 6 484 8.32e-111 339
MS.gene99613.t1 MTR_3g065200 43.421 456 194 10 12 453 3 408 3.82e-102 313
MS.gene99613.t1 MTR_7g066260 41.996 481 245 10 1 466 1 462 3.84e-100 309
MS.gene99613.t1 MTR_7g066430 39.545 483 261 8 13 466 5 485 1.24e-96 300
MS.gene99613.t1 MTR_7g066430 28.326 233 128 10 256 460 4 225 4.13e-12 68.6
MS.gene99613.t1 MTR_7g066410 37.087 515 260 10 10 468 8 514 7.38e-95 296
MS.gene99613.t1 MTR_7g066410 27.119 236 154 5 6 230 278 506 5.52e-13 71.2
MS.gene99613.t1 MTR_7g066480 40.890 472 208 8 12 472 16 427 2.32e-94 292
MS.gene99613.t1 MTR_7g012680 39.669 484 249 9 1 473 1 452 6.06e-94 292
MS.gene99613.t1 MTR_7g058710 36.417 508 264 11 1 473 1 484 3.88e-93 291
MS.gene99613.t1 MTR_7g066340 38.155 477 260 10 1 466 1 453 3.36e-90 283
MS.gene99613.t1 MTR_7g066360 40.586 478 231 13 2 462 4 445 3.39e-86 273
MS.gene99613.t1 MTR_7g066290 38.622 479 235 8 1 466 1 433 5.42e-86 271
MS.gene99613.t1 MTR_7g066490 39.140 465 200 10 12 466 16 407 7.84e-86 270
MS.gene99613.t1 MTR_7g066490 30.568 229 130 9 243 460 6 216 1.44e-11 66.6
MS.gene99613.t1 MTR_7g066580 37.190 484 224 11 24 469 7 448 3.82e-85 269
MS.gene99613.t1 MTR_7g066580 26.939 245 137 8 11 231 214 440 3.37e-14 74.7
MS.gene99613.t1 MTR_7g066350 37.288 472 254 9 11 468 8 451 2.44e-83 265
MS.gene99613.t1 MTR_7g063720 54.812 239 100 4 236 473 2 233 9.88e-82 253
MS.gene99613.t1 MTR_7g063720 29.339 242 138 9 14 249 25 239 1.68e-17 82.0
MS.gene99613.t1 MTR_7g066400 35.802 486 247 11 1 468 1 439 1.72e-81 259
MS.gene99613.t1 MTR_1g041315 33.824 476 258 9 3 450 5 451 1.15e-74 243
MS.gene99613.t1 MTR_7g058700 35.106 470 213 8 24 473 531 928 9.36e-72 244
MS.gene99613.t1 MTR_4g019310 34.990 503 285 13 6 473 2 497 6.79e-71 233
MS.gene99613.t1 MTR_7g066310 33.043 460 222 9 11 466 6 383 4.43e-68 223
MS.gene99613.t1 MTR_7g062270 58.696 184 74 2 6 188 3 185 3.33e-64 213
MS.gene99613.t1 MTR_7g062270 30.769 169 102 6 257 412 11 177 7.78e-13 70.5
MS.gene99613.t1 MTR_7g063850 44.850 301 142 7 183 472 1 288 2.61e-63 207
MS.gene99613.t1 MTR_2g029400 31.197 468 243 9 2 456 4 405 4.62e-62 207
MS.gene99613.t1 MTR_4g017830 30.651 522 297 16 1 472 1 507 1.43e-55 194
MS.gene99613.t1 MTR_4g017610 31.653 496 279 15 5 462 2 475 5.89e-53 185
MS.gene99613.t1 MTR_4g019340 31.078 473 291 12 10 454 36 501 1.17e-51 182
MS.gene99613.t1 MTR_4g017410 31.864 499 297 13 6 472 3 490 1.39e-51 182
MS.gene99613.t1 MTR_4g017470 28.053 524 277 13 1 472 1 476 2.85e-48 173
MS.gene99613.t1 MTR_4g017440 29.515 515 313 14 1 472 1 508 3.02e-46 168
MS.gene99613.t1 MTR_7g066280 31.051 409 230 11 91 466 1 390 4.69e-45 162
MS.gene99613.t1 MTR_7g066280 28.030 264 140 14 1 230 137 384 2.72e-13 72.0
MS.gene99613.t1 MTR_1g014060 43.902 205 110 4 21 223 9 210 1.30e-43 158
MS.gene99613.t1 MTR_1g014060 36.453 203 117 4 275 473 197 391 3.94e-29 118
MS.gene99613.t1 MTR_1g014060 28.241 216 131 8 269 466 13 222 7.93e-15 76.6
MS.gene99613.t1 MTR_7g066680 34.768 302 141 8 213 462 37 334 1.12e-39 146
MS.gene99613.t1 MTR_7g066680 31.443 194 106 10 6 186 80 259 5.60e-15 76.6
MS.gene99613.t1 MTR_7g100420 34.365 323 185 6 154 462 84 393 3.99e-36 138
MS.gene99613.t1 MTR_7g100420 66.000 50 17 0 6 55 33 82 2.41e-12 68.9
MS.gene99613.t1 MTR_8g023240 25.732 478 293 15 13 460 38 483 7.51e-36 140
MS.gene99613.t1 MTR_7g063690 49.296 142 70 1 144 283 81 222 1.59e-33 127
MS.gene99613.t1 MTR_7g063690 51.648 91 27 3 8 81 7 97 1.30e-16 79.7
MS.gene99613.t1 MTR_4g017550 27.872 470 269 18 42 462 21 469 1.20e-29 121
MS.gene99613.t1 MTR_4g017550 28.235 255 136 10 13 247 248 475 7.25e-14 73.9
MS.gene99613.t1 MTR_7g063760 63.514 74 26 1 401 473 1 74 2.91e-25 99.0
MS.gene99613.t1 MTR_1g115440 32.685 257 132 10 1 235 1 238 1.12e-23 99.8
MS.gene99613.t1 MTR_1g115440 29.204 226 136 6 256 460 11 233 2.28e-19 87.4
MS.gene99613.t1 MTR_0150s0010 30.738 244 147 8 5 235 3 237 4.58e-21 92.4
MS.gene99613.t1 MTR_8g445860 32.520 246 139 8 3 236 8 238 1.70e-20 90.9
MS.gene99613.t1 MTR_7g066390 56.164 73 32 0 394 466 50 122 1.81e-18 82.8
MS.gene99613.t1 MTR_2g067310 37.430 179 71 7 18 196 53 190 5.41e-18 83.6
MS.gene99613.t1 MTR_1g115455 28.571 259 136 9 1 236 1 233 2.82e-14 72.8
MS.gene99613.t1 MTR_7g063870 48.193 83 42 1 139 220 75 157 1.06e-13 71.2
MS.gene99613.t1 MTR_7g063870 57.143 56 24 0 6 61 25 80 1.42e-13 70.9
MS.gene99613.t1 MTR_1g115450 35.714 126 67 4 3 123 2 118 2.69e-13 67.4
MS.gene99613.t1 MTR_4g019330 29.756 205 94 5 270 472 32 188 4.68e-13 68.2
MS.gene99613.t1 MTR_8g445920 38.372 86 48 1 5 90 3 83 1.05e-11 62.0
MS.gene99613.t1 MTR_8g044890 38.372 86 48 1 5 90 3 83 1.05e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene99613.t1 AT3G09140 34.241 514 279 16 1 471 1 498 9.45e-68 225
MS.gene99613.t1 AT3G09140 32.472 542 279 17 1 471 1 526 1.33e-62 212
MS.gene99613.t1 AT5G01120 33.198 491 272 14 13 462 10 485 2.37e-61 208
MS.gene99613.t1 AT5G01130 33.054 478 279 10 7 473 4 451 4.45e-60 204
MS.gene99613.t1 AT5G01130 25.778 225 147 7 250 460 3 221 3.37e-11 65.5
MS.gene99613.t1 AT5G01150 30.409 513 281 10 7 473 4 486 2.85e-58 200
MS.gene99613.t1 AT5G01140 28.974 497 281 13 7 473 4 458 1.44e-54 189
MS.gene99613.t1 AT5G43240 31.325 498 276 13 13 462 10 489 5.66e-52 184
MS.gene99613.t1 AT5G43240 31.325 498 276 13 13 462 10 489 5.66e-52 184
MS.gene99613.t1 AT5G43240 31.325 498 276 13 13 462 10 489 5.66e-52 184
MS.gene99613.t1 AT3G09110 33.929 336 204 7 14 341 11 336 9.53e-50 173
MS.gene99613.t1 AT3G09120 36.677 319 167 8 11 307 5 310 1.66e-47 166
MS.gene99613.t1 AT3G09120 28.444 225 140 6 256 460 6 229 3.40e-15 76.6
MS.gene99613.t1 AT5G37320 29.293 495 288 18 13 468 10 481 9.17e-38 144
MS.gene99613.t1 AT5G43240 28.615 325 192 9 168 462 31 345 2.43e-18 87.0

Find 83 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCGTCGAGGATTTGTTAA+TGG 0.255342 7.1:-39219357 MS.gene99613:CDS
TTTGGGCTACTCCAGGAATT+TGG 0.263251 7.1:-39219270 MS.gene99613:CDS
GCCACTAATTTCAACATTAC+AGG 0.264233 7.1:+39218896 None:intergenic
TCCTGTAATGTTGAAATTAG+TGG 0.282405 7.1:-39218897 MS.gene99613:CDS
CCTTCCCTGCTTCTGCAAAT+AGG 0.332766 7.1:+39219754 None:intergenic
AACATTTCCTTCACCAAACT+TGG 0.340723 7.1:+39219237 None:intergenic
TGTATTGACAATGCAAGCTT+TGG 0.346373 7.1:-39219288 MS.gene99613:CDS
CACACCTCTTGATGATTTGA+AGG 0.352524 7.1:-39218355 MS.gene99613:CDS
AAATCCTCGACGGAATTGTT+TGG 0.356119 7.1:+39219365 None:intergenic
TTGTTTGGGCAAAACTTGAT+AGG 0.361532 7.1:+39219380 None:intergenic
TTTGGAGAAAATTGTTCTTT+GGG 0.362984 7.1:-39218741 MS.gene99613:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.1:+39219791 None:intergenic
AATTCTTGAGCCCGATGTTC+TGG 0.372767 7.1:-39218586 MS.gene99613:CDS
TTTCAAAAGCAGCTAAGAAT+AGG 0.383495 7.1:-39218662 MS.gene99613:CDS
GTATGTTGCTACAGATGATT+TGG 0.390764 7.1:-39218430 MS.gene99613:CDS
GGTTGTCACCATTGGAGTTA+AGG 0.390924 7.1:-39218328 MS.gene99613:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.1:-39219694 MS.gene99613:CDS
TTGGGAAGAAACCATCTGTT+GGG 0.404610 7.1:-39218935 MS.gene99613:CDS
AATCCTCGACGGAATTGTTT+GGG 0.409950 7.1:+39219366 None:intergenic
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.1:-39219711 MS.gene99613:CDS
AACCATCTGTTGGGGTTGGC+AGG 0.416063 7.1:-39218926 MS.gene99613:CDS
TTGTCTCCGATTTCAGCTAT+AGG 0.420760 7.1:-39218396 MS.gene99613:CDS
AGAACATCGGGCTCAAGAAT+TGG 0.433643 7.1:+39218588 None:intergenic
AGTAAACCTATAGCTGAAAT+CGG 0.439658 7.1:+39218390 None:intergenic
TCTCAATGTCACTAAAGAAA+AGG 0.439665 7.1:-39219214 MS.gene99613:intron
TCTTGATGATTTGAAGGAAA+AGG 0.443248 7.1:-39218349 MS.gene99613:CDS
GTATTGACAATGCAAGCTTT+GGG 0.446570 7.1:-39219287 MS.gene99613:CDS
AAGGAAAAGGTTGTCACCAT+TGG 0.447263 7.1:-39218336 MS.gene99613:CDS
AAAGTCCTATTTGCAGAAGC+AGG 0.448673 7.1:-39219759 MS.gene99613:CDS
TGGTTACATTATTCCAAAGC+TGG 0.461453 7.1:-39218534 MS.gene99613:CDS
CTTGCATTGTCAATACAACT+TGG 0.467131 7.1:+39219294 None:intergenic
CATCAAGAGGTGTGTTGAAA+CGG 0.475007 7.1:+39218364 None:intergenic
GGTGGGCCAGACCATTTGTA+AGG 0.483984 7.1:+39218146 None:intergenic
ATCCGCCCTTACAAATGGTC+TGG 0.485965 7.1:-39218152 MS.gene99613:CDS
CAGTAATACTCCAGAACATC+GGG 0.486208 7.1:+39218576 None:intergenic
TTAGACAACCAACTGTAACT+TGG 0.486889 7.1:+39219649 None:intergenic
TGATAAAATTAAACAAATGC+TGG 0.493259 7.1:-39219577 MS.gene99613:CDS
TAATCTTCCGCTGAGTTACA+TGG 0.501847 7.1:+39219549 None:intergenic
TTAAAAGGGGTCACTCATGA+AGG 0.505894 7.1:-39218474 MS.gene99613:CDS
TGCAAGCTTTGGGCTACTCC+AGG 0.507384 7.1:-39219277 MS.gene99613:CDS
TCAACATCCGCCCTTACAAA+TGG 0.510365 7.1:-39218157 MS.gene99613:CDS
GCTTGCTTAATGTTAAATGC+GGG 0.515939 7.1:+39218619 None:intergenic
TCTTACCTCCTTAACTCCAA+TGG 0.516510 7.1:+39218320 None:intergenic
AACATCGGTCAAAGTAGACT+TGG 0.519644 7.1:+39218962 None:intergenic
ATATGAACATCTGAAGTACT+TGG 0.532076 7.1:+39219485 None:intergenic
TTTGGGAAGAAACCATCTGT+TGG 0.536861 7.1:-39218936 MS.gene99613:CDS
AGCATAGGCCAAGTTACAGT+TGG 0.539867 7.1:-39219657 MS.gene99613:CDS
ACATCTATTTGTCGCTGTGT+GGG 0.544141 7.1:-39219411 MS.gene99613:CDS
TGCTTGCTTAATGTTAAATG+CGG 0.544421 7.1:+39218618 None:intergenic
CACTCATGAAGGTTATGTGA+AGG 0.547605 7.1:-39218463 MS.gene99613:CDS
TCTGTAGCAACATACATAGC+TGG 0.553647 7.1:+39218438 None:intergenic
AGAAGCAGGGAAGGACTTTG+TGG 0.556414 7.1:-39219745 MS.gene99613:CDS
TACATCTATTTGTCGCTGTG+TGG 0.559990 7.1:-39219412 MS.gene99613:CDS
AAGAAACCATCTGTTGGGGT+TGG 0.563173 7.1:-39218930 MS.gene99613:CDS
CCTATTTGCAGAAGCAGGGA+AGG 0.576721 7.1:-39219754 MS.gene99613:CDS
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.1:-39219685 MS.gene99613:CDS
ACAGTAATACTCCAGAACAT+CGG 0.582450 7.1:+39218575 None:intergenic
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.1:+39219696 None:intergenic
TGAACATCTGAAGTACTTGG+TGG 0.590030 7.1:+39219488 None:intergenic
AGTGTGGCAGAGCTCGATGA+AGG 0.590648 7.1:-39219612 MS.gene99613:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.1:+39219686 None:intergenic
GGTGAAGATAAAAGTAATTG+CGG 0.598652 7.1:-39218513 MS.gene99613:CDS
AACCTGCCAACCCCAACAGA+TGG 0.601175 7.1:+39218924 None:intergenic
GGCCAGACCATTTGTAAGGG+CGG 0.601666 7.1:+39218150 None:intergenic
GTTAAATGCGGGGAAATGCA+AGG 0.603048 7.1:+39218630 None:intergenic
TGGGAAGAAACCATCTGTTG+GGG 0.604158 7.1:-39218934 MS.gene99613:CDS
AAGTCCTATTTGCAGAAGCA+GGG 0.609775 7.1:-39219758 MS.gene99613:CDS
GTGGGCCAGACCATTTGTAA+GGG 0.615025 7.1:+39218147 None:intergenic
TATAGCTGAAATCGGAGACA+AGG 0.622787 7.1:+39218398 None:intergenic
ACTCATGAAGGTTATGTGAA+GGG 0.622820 7.1:-39218462 MS.gene99613:CDS
CTTGCTTAATGTTAAATGCG+GGG 0.623908 7.1:+39218620 None:intergenic
CACCATTAACAAATCCTCGA+CGG 0.626619 7.1:+39219355 None:intergenic
TGTCACCATTGGAGTTAAGG+AGG 0.627855 7.1:-39218325 MS.gene99613:intron
TTTAACTTCAGTTAACAGGT+GGG 0.629710 7.1:+39218129 None:intergenic
CTAGTTATAAGAAAATCTGA+TGG 0.635745 7.1:-39218852 MS.gene99613:CDS
AAACTCACTTTATCGAAGTG+TGG 0.637039 7.1:-39219628 MS.gene99613:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.643725 7.1:-39219672 MS.gene99613:CDS
TACTACTTCTACTCAAGCAG+AGG 0.643833 7.1:-39219823 MS.gene99613:CDS
ATACGAGTAATTCCTCCCAA+AGG 0.650121 7.1:+39218765 None:intergenic
TTGCCCAAACAATTCCGTCG+AGG 0.662336 7.1:-39219369 MS.gene99613:CDS
ATAGCTGAAATCGGAGACAA+GGG 0.663231 7.1:+39218399 None:intergenic
GAACATCTGAAGTACTTGGT+GGG 0.688402 7.1:+39219489 None:intergenic
GGTGCAACCATGTAACTCAG+CGG 0.750837 7.1:-39219556 MS.gene99613:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAATGAATTTTTTAAAAG+GGG - chr7.1:39219461-39219480 MS.gene99613:CDS 10.0%
!!! TTTTAATGCATTTATTTACT+TGG - chr7.1:39219689-39219708 MS.gene99613:CDS 15.0%
!! ACAAACAAAAGCAAAAATTT+AGG + chr7.1:39218782-39218801 None:intergenic 20.0%
!! CAAACAAAAGCAAAAATTTA+GGG + chr7.1:39218781-39218800 None:intergenic 20.0%
!! TGATAAAATTAAACAAATGC+TGG - chr7.1:39218371-39218390 MS.gene99613:CDS 20.0%
!! TTTCTATTACGAATTGATAT+AGG - chr7.1:39218933-39218952 MS.gene99613:CDS 20.0%
!!! TATTACTGTTTTAAGGATAA+TGG - chr7.1:39219387-39219406 MS.gene99613:CDS 20.0%
! CTAGTTATAAGAAAATCTGA+TGG - chr7.1:39219096-39219115 MS.gene99613:intron 25.0%
! TGGAATTAAAAATCCAAGTT+TGG - chr7.1:39218698-39218717 MS.gene99613:CDS 25.0%
! TGGATACTAGAATTTAACTA+TGG - chr7.1:39219709-39219728 MS.gene99613:CDS 25.0%
! TTTCTTCCCAAAAAAAACAT+CGG + chr7.1:39219004-39219023 None:intergenic 25.0%
! TTTGGAGAAAATTGTTCTTT+GGG - chr7.1:39219207-39219226 MS.gene99613:intron 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.1:39218162-39218181 MS.gene99613:CDS 25.0%
!! ATATTTAAAGTTAAGAGAGG+TGG + chr7.1:39218873-39218892 None:intergenic 25.0%
!! GCAATATTTAAAGTTAAGAG+AGG + chr7.1:39218876-39218895 None:intergenic 25.0%
!! TTACCTTTCTTATTGTTTTC+AGG - chr7.1:39219739-39219758 MS.gene99613:CDS 25.0%
!!! CTTTTTTAACTTCAGTTAAC+AGG + chr7.1:39219826-39219845 None:intergenic 25.0%
!!! GATTTTTAATTCCAAATTCC+TGG + chr7.1:39218692-39218711 None:intergenic 25.0%
!!! GTTTTAAGGATAATGGTATT+TGG - chr7.1:39219394-39219413 MS.gene99613:CDS 25.0%
!!! TTTTGGAGAAAATTGTTCTT+TGG - chr7.1:39219206-39219225 MS.gene99613:intron 25.0%
AGTAAACCTATAGCTGAAAT+CGG + chr7.1:39219561-39219580 None:intergenic 30.0%
GGTGAAGATAAAAGTAATTG+CGG - chr7.1:39219435-39219454 MS.gene99613:CDS 30.0%
TCCTGTAATGTTGAAATTAG+TGG - chr7.1:39219051-39219070 MS.gene99613:intron 30.0%
TCTCAATGTCACTAAAGAAA+AGG - chr7.1:39218734-39218753 MS.gene99613:CDS 30.0%
TGCTTGCTTAATGTTAAATG+CGG + chr7.1:39219333-39219352 None:intergenic 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.1:39218160-39218179 None:intergenic 30.0%
TTTCAAAAGCAGCTAAGAAT+AGG - chr7.1:39219286-39219305 MS.gene99613:CDS 30.0%
! ATATGAACATCTGAAGTACT+TGG + chr7.1:39218466-39218485 None:intergenic 30.0%
! TAAAAATCCAAGTTTGGTGA+AGG - chr7.1:39218704-39218723 MS.gene99613:CDS 30.0%
! TCTTGATGATTTGAAGGAAA+AGG - chr7.1:39219599-39219618 MS.gene99613:CDS 30.0%
! TTTAACTTCAGTTAACAGGT+GGG + chr7.1:39219822-39219841 None:intergenic 30.0%
! TTTTCCTTCAAATCATCAAG+AGG + chr7.1:39219600-39219619 None:intergenic 30.0%
!! AAGCTTTCTTACTTTTCCTT+TGG - chr7.1:39219167-39219186 MS.gene99613:intron 30.0%
!! ACAATGTCAGAGTTATTTTG+TGG - chr7.1:39218813-39218832 MS.gene99613:CDS 30.0%
!! AGCTTTCTTACTTTTCCTTT+GGG - chr7.1:39219168-39219187 MS.gene99613:intron 30.0%
!! CAATGTCAGAGTTATTTTGT+GGG - chr7.1:39218814-39218833 MS.gene99613:CDS 30.0%
!! TCTGGAGTATTACTGTTTTA+AGG - chr7.1:39219380-39219399 MS.gene99613:CDS 30.0%
!!! ACTTTGACCGATGTTTTTTT+TGG - chr7.1:39218994-39219013 MS.gene99613:CDS 30.0%
!!! CTTTGACCGATGTTTTTTTT+GGG - chr7.1:39218995-39219014 MS.gene99613:CDS 30.0%
!!! TTTTAACTTCAGTTAACAGG+TGG + chr7.1:39219823-39219842 None:intergenic 30.0%
AAACTCACTTTATCGAAGTG+TGG - chr7.1:39218320-39218339 MS.gene99613:intron 35.0%
AACATTTCCTTCACCAAACT+TGG + chr7.1:39218714-39218733 None:intergenic 35.0%
ACAGTAATACTCCAGAACAT+CGG + chr7.1:39219376-39219395 None:intergenic 35.0%
ACTCATGAAGGTTATGTGAA+GGG - chr7.1:39219486-39219505 MS.gene99613:CDS 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7.1:39218237-39218256 MS.gene99613:intron 35.0%
CTTGCATTGTCAATACAACT+TGG + chr7.1:39218657-39218676 None:intergenic 35.0%
CTTGCTTAATGTTAAATGCG+GGG + chr7.1:39219331-39219350 None:intergenic 35.0%
GAGCCTGAAAACAATAAGAA+AGG + chr7.1:39219745-39219764 None:intergenic 35.0%
GCCACTAATTTCAACATTAC+AGG + chr7.1:39219055-39219074 None:intergenic 35.0%
GCTTGCTTAATGTTAAATGC+GGG + chr7.1:39219332-39219351 None:intergenic 35.0%
GTATGTTGCTACAGATGATT+TGG - chr7.1:39219518-39219537 MS.gene99613:CDS 35.0%
TGGTTACATTATTCCAAAGC+TGG - chr7.1:39219414-39219433 MS.gene99613:CDS 35.0%
TTAGACAACCAACTGTAACT+TGG + chr7.1:39218302-39218321 None:intergenic 35.0%
TTGTTTGGGCAAAACTTGAT+AGG + chr7.1:39218571-39218590 None:intergenic 35.0%
! ACTTTTATCTTCACCAGCTT+TGG + chr7.1:39219430-39219449 None:intergenic 35.0%
! GGAGGAATTACTCGTATTTT+TGG - chr7.1:39219189-39219208 MS.gene99613:intron 35.0%
! GTATTGACAATGCAAGCTTT+GGG - chr7.1:39218661-39218680 MS.gene99613:CDS 35.0%
! TGTATTGACAATGCAAGCTT+TGG - chr7.1:39218660-39218679 MS.gene99613:CDS 35.0%
!! TTTCTTACTTTTCCTTTGGG+AGG - chr7.1:39219171-39219190 MS.gene99613:intron 35.0%
AAAGTCCTATTTGCAGAAGC+AGG - chr7.1:39218189-39218208 MS.gene99613:CDS 40.0%
AAATCCTCGACGGAATTGTT+TGG + chr7.1:39218586-39218605 None:intergenic 40.0%
AACATCGGTCAAAGTAGACT+TGG + chr7.1:39218989-39219008 None:intergenic 40.0%
AAGGAAAAGGTTGTCACCAT+TGG - chr7.1:39219612-39219631 MS.gene99613:CDS 40.0%
AAGTCCTATTTGCAGAAGCA+GGG - chr7.1:39218190-39218209 MS.gene99613:CDS 40.0%
AATCCTCGACGGAATTGTTT+GGG + chr7.1:39218585-39218604 None:intergenic 40.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.1:39218255-39218274 None:intergenic 40.0%
ACATCTATTTGTCGCTGTGT+GGG - chr7.1:39218537-39218556 MS.gene99613:CDS 40.0%
ATACGAGTAATTCCTCCCAA+AGG + chr7.1:39219186-39219205 None:intergenic 40.0%
ATAGCTGAAATCGGAGACAA+GGG + chr7.1:39219552-39219571 None:intergenic 40.0%
CACCATTAACAAATCCTCGA+CGG + chr7.1:39218596-39218615 None:intergenic 40.0%
CACTCATGAAGGTTATGTGA+AGG - chr7.1:39219485-39219504 MS.gene99613:CDS 40.0%
CAGTAATACTCCAGAACATC+GGG + chr7.1:39219375-39219394 None:intergenic 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7.1:39218276-39218295 MS.gene99613:intron 40.0%
TAATCTTCCGCTGAGTTACA+TGG + chr7.1:39218402-39218421 None:intergenic 40.0%
TACATCTATTTGTCGCTGTG+TGG - chr7.1:39218536-39218555 MS.gene99613:CDS 40.0%
TACTACTTCTACTCAAGCAG+AGG - chr7.1:39218125-39218144 MS.gene99613:CDS 40.0%
TATAGCTGAAATCGGAGACA+AGG + chr7.1:39219553-39219572 None:intergenic 40.0%
TCTGTAGCAACATACATAGC+TGG + chr7.1:39219513-39219532 None:intergenic 40.0%
TCTTACCTCCTTAACTCCAA+TGG + chr7.1:39219631-39219650 None:intergenic 40.0%
TTAAAAGGGGTCACTCATGA+AGG - chr7.1:39219474-39219493 MS.gene99613:CDS 40.0%
TTGGGAAGAAACCATCTGTT+GGG - chr7.1:39219013-39219032 MS.gene99613:intron 40.0%
TTGTCTCCGATTTCAGCTAT+AGG - chr7.1:39219552-39219571 MS.gene99613:CDS 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.1:39218254-39218273 MS.gene99613:intron 40.0%
TTTGGGAAGAAACCATCTGT+TGG - chr7.1:39219012-39219031 MS.gene99613:intron 40.0%
! CAAGATTTTGTGTGCTCAAG+GGG - chr7.1:39219119-39219138 MS.gene99613:intron 40.0%
! CACACCTCTTGATGATTTGA+AGG - chr7.1:39219593-39219612 MS.gene99613:CDS 40.0%
! CATCAAGAGGTGTGTTGAAA+CGG + chr7.1:39219587-39219606 None:intergenic 40.0%
! GAACATCTGAAGTACTTGGT+GGG + chr7.1:39218462-39218481 None:intergenic 40.0%
! GCAAGATTTTGTGTGCTCAA+GGG - chr7.1:39219118-39219137 MS.gene99613:intron 40.0%
! TGAACATCTGAAGTACTTGG+TGG + chr7.1:39218463-39218482 None:intergenic 40.0%
!! TGTCAGAGTTATTTTGTGGG+TGG - chr7.1:39218817-39218836 MS.gene99613:CDS 40.0%
!! TTCCGTCGAGGATTTGTTAA+TGG - chr7.1:39218591-39218610 MS.gene99613:CDS 40.0%
AAGAAACCATCTGTTGGGGT+TGG - chr7.1:39219018-39219037 MS.gene99613:intron 45.0%
AATTCTTGAGCCCGATGTTC+TGG - chr7.1:39219362-39219381 MS.gene99613:CDS 45.0%
AGAACATCGGGCTCAAGAAT+TGG + chr7.1:39219363-39219382 None:intergenic 45.0%
AGAGGTGGTTGTAGAGAAGT+GGG + chr7.1:39218858-39218877 None:intergenic 45.0%
AGCATAGGCCAAGTTACAGT+TGG - chr7.1:39218291-39218310 MS.gene99613:intron 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.1:39218263-39218282 MS.gene99613:intron 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.1:39218265-39218284 None:intergenic 45.0%
GGTTGTCACCATTGGAGTTA+AGG - chr7.1:39219620-39219639 MS.gene99613:CDS 45.0%
GTTAAATGCGGGGAAATGCA+AGG + chr7.1:39219321-39219340 None:intergenic 45.0%
TCAACATCCGCCCTTACAAA+TGG - chr7.1:39219791-39219810 MS.gene99613:CDS 45.0%
TGGGAAGAAACCATCTGTTG+GGG - chr7.1:39219014-39219033 MS.gene99613:intron 45.0%
TGTCACCATTGGAGTTAAGG+AGG - chr7.1:39219623-39219642 MS.gene99613:CDS 45.0%
TTTGGGCTACTCCAGGAATT+TGG - chr7.1:39218678-39218697 MS.gene99613:CDS 45.0%
! GGCAAGATTTTGTGTGCTCA+AGG - chr7.1:39219117-39219136 MS.gene99613:intron 45.0%
!!! AAATTAATGAATTTTTTAAA+AGG - chr7.1:39219459-39219478 MS.gene99613:CDS 5.0%
!!! AATTAATGAATTTTTTAAAA+GGG - chr7.1:39219460-39219479 MS.gene99613:CDS 5.0%
AGAAGCAGGGAAGGACTTTG+TGG - chr7.1:39218203-39218222 MS.gene99613:intron 50.0%
ATCCGCCCTTACAAATGGTC+TGG - chr7.1:39219796-39219815 MS.gene99613:CDS 50.0%
CCTATTTGCAGAAGCAGGGA+AGG - chr7.1:39218194-39218213 MS.gene99613:intron 50.0%
CCTTCCCTGCTTCTGCAAAT+AGG + chr7.1:39218197-39218216 None:intergenic 50.0%
GAGAGGTGGTTGTAGAGAAG+TGG + chr7.1:39218859-39218878 None:intergenic 50.0%
GGTGCAACCATGTAACTCAG+CGG - chr7.1:39218392-39218411 MS.gene99613:CDS 50.0%
GTGGGCCAGACCATTTGTAA+GGG + chr7.1:39219804-39219823 None:intergenic 50.0%
TTGCCCAAACAATTCCGTCG+AGG - chr7.1:39218579-39218598 MS.gene99613:CDS 50.0%
AACCTGCCAACCCCAACAGA+TGG + chr7.1:39219027-39219046 None:intergenic 55.0%
AGTGTGGCAGAGCTCGATGA+AGG - chr7.1:39218336-39218355 MS.gene99613:CDS 55.0%
GGCCAGACCATTTGTAAGGG+CGG + chr7.1:39219801-39219820 None:intergenic 55.0%
GGTGGGCCAGACCATTTGTA+AGG + chr7.1:39219805-39219824 None:intergenic 55.0%
! AACCATCTGTTGGGGTTGGC+AGG - chr7.1:39219022-39219041 MS.gene99613:intron 55.0%
!! TGCAAGCTTTGGGCTACTCC+AGG - chr7.1:39218671-39218690 MS.gene99613:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 39218117 39219853 39218117 ID=MS.gene99613
chr7.1 mRNA 39218117 39219853 39218117 ID=MS.gene99613.t1;Parent=MS.gene99613
chr7.1 exon 39219215 39219853 39219215 ID=MS.gene99613.t1.exon1;Parent=MS.gene99613.t1
chr7.1 CDS 39219215 39219853 39219215 ID=cds.MS.gene99613.t1;Parent=MS.gene99613.t1
chr7.1 exon 39218326 39219015 39218326 ID=MS.gene99613.t1.exon2;Parent=MS.gene99613.t1
chr7.1 CDS 39218326 39219015 39218326 ID=cds.MS.gene99613.t1;Parent=MS.gene99613.t1
chr7.1 exon 39218117 39218209 39218117 ID=MS.gene99613.t1.exon3;Parent=MS.gene99613.t1
chr7.1 CDS 39218117 39218209 39218117 ID=cds.MS.gene99613.t1;Parent=MS.gene99613.t1
Gene Sequence

>MS.gene99613

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCCTATTTGCAGAAGCAGGGAAGGACTTTGTGGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGCCAAGTTACAGTTGGTTGTCTAAACTCACTTTATCGAAGTGTGGCAGAGCTCGATGAAGGTTATCTGAGTACTGATAAAATTAAACAAATGCTGGTGCAACCATGTAACTCAGCGGAAGATTATTGCAACACTCTTAAACTCAACATTGACGACACTCAACCCACCAAGTACTTCAGATGTTCATATTATAATGACGATGACTACACTCATGATTTGATAAAATCAACAATTAAAGATACATCTATTTGTCGCTGTGTGGGTTTTTTGTCCTATCAAGTTTTGCCCAAACAATTCCGTCGAGGATTTGTTAATGGTGTTGCTACTTTTGTGATAACTGATGATCTGAATGTCATTCCAAGTTGTATTGACAATGCAAGCTTTGGGCTACTCCAGGAATTTGGAATTAAAAATCCAAGTTTGGTGAAGGAAATGTTTCTCAATGTCACTAAAGAAAAGGTTTTGTATTTGAATTTCTATTCCCTAAATTTTTGCTTTTGTTTGTTTTTTGAATGAACAATGTCAGAGTTATTTTGTGGGTGGAGATTTTACAAGTAGCCCACTTCTCTACAACCACCTCTCTTAACTTTAAATATTGCTATTTTTTTTTTTTTTTATCAATTATGTTTGCTAATTTTTCTATTACGAATTGATATAGGTACTTGATTTACTAAAATGCTCTTTGCTCTCCAAGTCTACTTTGACCGATGTTTTTTTTGGGAAGAAACCATCTGTTGGGGTTGGCAGGTTTTTCTCCTGTAATGTTGAAATTAGTGGCAATATGCAAATCATTTTAAAACTAGTTATAAGAAAATCTGATGGCAAGATTTTGTGTGCTCAAGGGGAACAAGATTTTGCAGACTTACTTTTAAGCTTTCTTACTTTTCCTTTGGGAGGAATTACTCGTATTTTTGGAGAAAATTGTTCTTTGGGCAGCATTAATCGATTCTTCAAGAGCGTAGCTGATTTAAATGAAAACAAATATTTCATTTCAAAAGCAGCTAAGAATAGGATTGTTGATCCTTGCATTTCCCCGCATTTAACATTAAGCAAGCAAATATTACCAATTCTTGAGCCCGATGTTCTGGAGTATTACTGTTTTAAGGATAATGGTATTTGGTTACATTATTCCAAAGCTGGTGAAGATAAAAGTAATTGCGGAAAATTAATGAATTTTTTAAAAGGGGTCACTCATGAAGGTTATGTGAAGGGTCCAGCTATGTATGTTGCTACAGATGATTTGGTCATTGCACCCTTGTCTCCGATTTCAGCTATAGGTTTACTTAACCGTTTCAACACACCTCTTGATGATTTGAAGGAAAAGGTTGTCACCATTGGAGTTAAGGAGGTAAGAAATTGTAAAAATTGCTAGTGTAGATTTTTATGCTCATTTTTTAATGCATTTATTTACTTGGATACTAGAATTTAACTATGGCTTATATTTACCTTTCTTATTGTTTTCAGGCTCTCAGCATATTGAATGCTGCTTTAACTTCAACATCCGCCCTTACAAATGGTCTGGCCCACCTGTTAACTGAAGTTAAAAAAGAGAAGTGA
Protein sequence

>MS.gene99613.t1

MAATTSTQAEEHVSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQVTVGCLNSLYRSVAELDEGYLSTDKIKQMLVQPCNSAEDYCNTLKLNIDDTQPTKYFRCSYYNDDDYTHDLIKSTIKDTSICRCVGFLSYQVLPKQFRRGFVNGVATFVITDDLNVIPSCIDNASFGLLQEFGIKNPSLVKEMFLNVTKEKVLDLLKCSLLSKSTLTDVFFGKKPSVGVGRFFSCNVEISGNMQIILKLVIRKSDGKILCAQGEQDFADLLLSFLTFPLGGITRIFGENCSLGSINRFFKSVADLNENKYFISKAAKNRIVDPCISPHLTLSKQILPILEPDVLEYYCFKDNGIWLHYSKAGEDKSNCGKLMNFLKGVTHEGYVKGPAMYVATDDLVIAPLSPISAIGLLNRFNTPLDDLKEKVVTIGVKEALSILNAALTSTSALTNGLAHLLTEVKKEK