AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89824

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89824.t1 MTR_7g063900 93.238 488 33 0 1 488 1 488 0.0 909
MS.gene89824.t1 MTR_7g063890 74.180 488 123 3 2 488 19 504 0.0 679
MS.gene89824.t1 MTR_7g063840 56.823 491 191 7 1 488 1 473 7.71e-180 513
MS.gene89824.t1 MTR_7g062280 54.871 503 200 8 1 488 1 491 2.10e-179 512
MS.gene89824.t1 MTR_7g062300 57.055 489 185 11 1 481 1 472 5.40e-177 505
MS.gene89824.t1 MTR_7g063880 54.786 491 189 10 2 486 3 466 2.20e-171 491
MS.gene89824.t1 MTR_7g063820 56.338 497 195 10 1 488 1 484 3.42e-169 486
MS.gene89824.t1 MTR_7g063660 55.031 487 201 10 6 488 5 477 5.23e-169 485
MS.gene89824.t1 MTR_7g063920 54.303 488 168 7 2 488 3 436 1.70e-166 477
MS.gene89824.t1 MTR_7g063830 53.768 491 167 10 1 483 1 439 1.65e-165 475
MS.gene89824.t1 MTR_3g007740 52.227 494 171 14 3 483 2 443 2.20e-144 421
MS.gene89824.t1 MTR_7g063670 48.980 490 196 11 8 488 13 457 2.07e-132 391
MS.gene89824.t1 MTR_7g066570 43.539 503 245 13 3 486 2 484 1.45e-120 365
MS.gene89824.t1 MTR_7g066430 42.245 490 258 9 10 482 4 485 1.42e-111 339
MS.gene89824.t1 MTR_7g066410 40.613 522 262 9 1 483 1 513 2.47e-110 337
MS.gene89824.t1 MTR_7g066260 41.767 498 229 14 1 480 6 460 5.28e-107 327
MS.gene89824.t1 MTR_7g066260 26.230 244 146 8 13 255 272 482 2.52e-14 75.5
MS.gene89824.t1 MTR_3g065200 43.777 466 196 14 10 469 3 408 6.98e-105 321
MS.gene89824.t1 MTR_7g058710 38.716 514 258 16 1 488 1 483 8.96e-102 313
MS.gene89824.t1 MTR_7g066340 40.365 493 237 14 3 482 5 453 1.08e-100 310
MS.gene89824.t1 MTR_7g066340 28.452 239 131 9 6 239 260 463 2.24e-17 85.1
MS.gene89824.t1 MTR_7g012680 39.563 503 237 11 1 488 1 451 6.77e-100 308
MS.gene89824.t1 MTR_7g066350 39.419 482 236 10 9 478 8 445 1.16e-93 292
MS.gene89824.t1 MTR_7g066350 27.309 249 149 9 252 486 9 239 1.17e-14 76.6
MS.gene89824.t1 MTR_7g066580 38.144 485 236 13 16 479 1 442 2.72e-91 285
MS.gene89824.t1 MTR_7g066360 39.192 495 232 14 2 479 4 446 1.22e-88 280
MS.gene89824.t1 MTR_1g041315 37.014 489 235 14 5 466 9 451 4.83e-86 273
MS.gene89824.t1 MTR_7g066290 37.698 504 221 15 1 482 1 433 5.32e-85 268
MS.gene89824.t1 MTR_7g066400 35.729 501 231 14 1 478 1 433 6.23e-83 264
MS.gene89824.t1 MTR_7g063720 51.751 257 94 6 232 486 2 230 1.14e-78 246
MS.gene89824.t1 MTR_7g063720 31.019 216 126 8 13 226 26 220 9.65e-20 88.6
MS.gene89824.t1 MTR_7g066480 44.582 323 166 4 10 323 16 334 2.78e-76 246
MS.gene89824.t1 MTR_7g066480 48.810 84 43 0 400 483 339 422 2.23e-14 75.5
MS.gene89824.t1 MTR_7g066490 44.375 320 155 7 11 323 17 320 3.90e-75 242
MS.gene89824.t1 MTR_7g066490 40.367 109 56 1 375 483 309 408 5.61e-13 70.9
MS.gene89824.t1 MTR_7g066310 35.443 474 206 11 9 480 6 381 5.77e-74 239
MS.gene89824.t1 MTR_7g066310 28.916 249 137 9 6 252 190 400 8.51e-17 82.8
MS.gene89824.t1 MTR_2g029400 34.874 476 223 11 4 471 8 404 2.31e-73 238
MS.gene89824.t1 MTR_4g019310 35.050 505 278 18 8 482 6 490 9.45e-73 239
MS.gene89824.t1 MTR_7g058700 35.246 488 204 11 22 488 531 927 7.20e-71 242
MS.gene89824.t1 MTR_7g100420 45.092 326 160 7 153 478 87 393 3.51e-68 224
MS.gene89824.t1 MTR_7g100420 71.154 52 15 0 2 53 31 82 2.87e-16 81.3
MS.gene89824.t1 MTR_7g100420 27.660 235 153 7 10 236 177 402 2.37e-11 65.9
MS.gene89824.t1 MTR_4g017440 32.812 512 291 15 6 482 9 502 2.73e-65 219
MS.gene89824.t1 MTR_7g062270 56.545 191 70 3 1 184 1 185 2.11e-64 214
MS.gene89824.t1 MTR_7g062270 28.646 192 98 8 253 429 11 178 2.03e-11 65.9
MS.gene89824.t1 MTR_7g063850 43.408 311 152 8 179 488 1 288 3.57e-64 210
MS.gene89824.t1 MTR_4g017830 32.563 519 295 19 1 482 1 501 1.14e-63 216
MS.gene89824.t1 MTR_4g017470 30.980 510 283 12 3 483 2 471 1.37e-62 212
MS.gene89824.t1 MTR_4g017410 32.819 518 277 18 3 483 2 485 9.00e-62 210
MS.gene89824.t1 MTR_4g017610 32.252 493 274 17 13 478 16 475 1.25e-57 198
MS.gene89824.t1 MTR_7g063690 44.523 283 89 7 2 279 3 222 1.06e-56 189
MS.gene89824.t1 MTR_4g019340 31.548 504 280 15 1 470 29 501 1.88e-56 196
MS.gene89824.t1 MTR_4g019340 29.907 214 134 7 10 221 303 502 2.51e-13 72.4
MS.gene89824.t1 MTR_7g066280 34.293 417 224 15 89 482 1 390 8.68e-51 178
MS.gene89824.t1 MTR_1g014060 45.500 200 104 4 19 215 9 206 5.76e-49 173
MS.gene89824.t1 MTR_1g014060 35.714 224 108 8 271 488 197 390 3.95e-30 121
MS.gene89824.t1 MTR_1g014060 28.241 216 118 8 265 465 13 206 2.21e-14 75.1
MS.gene89824.t1 MTR_4g017550 30.595 487 256 18 40 480 21 471 7.44e-46 166
MS.gene89824.t1 MTR_4g017550 29.289 239 127 9 10 225 247 466 1.52e-13 73.2
MS.gene89824.t1 MTR_7g066680 35.048 311 148 8 209 478 37 334 3.57e-40 148
MS.gene89824.t1 MTR_7g066680 26.432 227 128 9 4 211 80 286 2.80e-12 68.2
MS.gene89824.t1 MTR_8g023240 26.087 483 307 14 7 474 34 481 4.04e-40 152
MS.gene89824.t1 MTR_8g445860 29.536 237 142 7 10 232 13 238 6.01e-26 106
MS.gene89824.t1 MTR_8g445860 28.814 236 147 6 248 475 9 231 1.35e-21 94.0
MS.gene89824.t1 MTR_0150s0010 29.317 249 146 7 1 231 1 237 2.46e-24 101
MS.gene89824.t1 MTR_0150s0010 31.624 234 150 7 246 475 4 231 6.92e-21 92.0
MS.gene89824.t1 MTR_1g115440 29.675 246 147 7 2 231 3 238 6.18e-23 97.8
MS.gene89824.t1 MTR_7g063760 58.333 72 29 1 418 488 2 73 4.93e-21 87.4
MS.gene89824.t1 MTR_2g067310 35.294 187 78 6 10 192 43 190 1.93e-20 90.9
MS.gene89824.t1 MTR_1g115455 28.226 248 144 6 3 232 2 233 2.78e-19 87.4
MS.gene89824.t1 MTR_1g115455 28.099 242 148 8 245 476 2 227 3.26e-14 72.4
MS.gene89824.t1 MTR_7g063870 68.421 57 18 0 4 60 25 81 3.79e-18 84.3
MS.gene89824.t1 MTR_7g063870 54.839 62 28 0 155 216 96 157 2.43e-13 70.5
MS.gene89824.t1 MTR_1g115450 33.600 125 74 3 7 127 4 123 1.43e-14 71.2
MS.gene89824.t1 MTR_1g115450 34.524 84 55 0 248 331 3 86 1.06e-11 63.2
MS.gene89824.t1 MTR_1g115470 40.187 107 56 3 5 109 1 101 6.05e-13 71.2
MS.gene89824.t1 MTR_7g066390 45.122 82 41 2 399 480 43 120 9.02e-13 66.6
MS.gene89824.t1 MTR_8g445920 40.909 88 47 2 1 88 1 83 4.42e-12 63.2
MS.gene89824.t1 MTR_8g044890 40.909 88 47 2 1 88 1 83 4.42e-12 63.2
MS.gene89824.t1 MTR_4g019240 37.391 115 60 4 6 110 7 119 4.74e-12 65.1
MS.gene89824.t1 MTR_0150s0030 37.647 85 47 2 10 93 8 87 5.07e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89824.t1 AT5G01150 31.673 502 289 16 8 483 7 480 1.69e-62 212
MS.gene89824.t1 AT5G01150 24.590 244 152 6 247 476 4 229 8.78e-15 77.0
MS.gene89824.t1 AT5G01120 34.350 492 283 15 11 478 10 485 7.68e-62 210
MS.gene89824.t1 AT5G01120 27.500 240 144 10 6 230 263 487 8.52e-11 64.7
MS.gene89824.t1 AT3G09140 31.845 515 298 14 1 483 1 494 7.36e-60 205
MS.gene89824.t1 AT5G43240 33.333 507 291 16 1 478 1 489 8.71e-59 202
MS.gene89824.t1 AT5G43240 33.333 507 291 16 1 478 1 489 8.71e-59 202
MS.gene89824.t1 AT5G43240 33.333 507 291 16 1 478 1 489 8.71e-59 202
MS.gene89824.t1 AT3G09110 34.483 348 204 6 1 336 1 336 3.36e-56 191
MS.gene89824.t1 AT5G01130 31.098 492 281 14 8 488 7 451 3.82e-55 191
MS.gene89824.t1 AT3G09140 30.203 543 298 15 1 483 1 522 1.03e-54 192
MS.gene89824.t1 AT5G01140 30.739 501 275 19 3 482 2 451 5.60e-53 186
MS.gene89824.t1 AT3G09120 34.505 313 186 6 9 306 5 313 2.48e-43 155
MS.gene89824.t1 AT3G09120 27.615 239 144 8 252 476 6 229 4.68e-15 76.6
MS.gene89824.t1 AT5G37320 27.096 513 294 15 15 487 13 485 9.84e-38 144
MS.gene89824.t1 AT5G43240 30.792 341 201 13 156 478 22 345 4.10e-21 95.1

Find 78 sgRNAs with CRISPR-Local

Find 91 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTTCCTTTAGGTGATT+TGG 0.164558 7.3:-41464055 None:intergenic
CTTAGTATGCTTCAAAATTA+TGG 0.210936 7.3:+41463301 MS.gene89824:CDS
TCTCTGACAGATTTGTTTCT+AGG 0.224145 7.3:+41463526 MS.gene89824:CDS
GGAGGAGTCGTTCGTATATT+AGG 0.243181 7.3:+41463721 MS.gene89824:CDS
TAACCATCATCATTTCCTTT+AGG 0.299565 7.3:-41464063 None:intergenic
TAATCTTCAGAAGAGTTCTT+TGG 0.301786 7.3:-41463028 None:intergenic
TAACAAAAGTAACACCTTCT+TGG 0.305338 7.3:-41463231 None:intergenic
TCATTTCCTTTAGGTGATTT+GGG 0.316839 7.3:-41464054 None:intergenic
AAGAGAAAACACTTGAATTC+TGG 0.326652 7.3:-41463564 None:intergenic
GATTGTTTCTGCATCAATAA+TGG 0.349655 7.3:+41463118 MS.gene89824:CDS
TGCAAGTTTAATTTGAAGTA+AGG 0.354969 7.3:-41463859 None:intergenic
GCAGTGTCTGAGCATATTAA+AGG 0.368152 7.3:+41464339 MS.gene89824:intron
CAAAGTACCTCATATGTTGC+AGG 0.372770 7.3:+41463092 MS.gene89824:CDS
ATCAATGTTAAGTTTAAGAT+TGG 0.374669 7.3:-41463056 None:intergenic
ATTAGGAGGGAACTGTTCTA+TGG 0.374705 7.3:+41463738 MS.gene89824:CDS
TTCAAACAACCTATTGTAAC+AGG 0.382137 7.3:-41462929 None:intergenic
GAAGATAGGAGTCGTGAATA+TGG 0.383191 7.3:+41463985 MS.gene89824:CDS
AGTTTACTCACATTTCCATT+AGG 0.384717 7.3:+41463700 MS.gene89824:CDS
CTCAGCAAATAAGACTTTGT+TGG 0.395054 7.3:-41462813 None:intergenic
AATCTTCAGAAGAGTTCTTT+GGG 0.396497 7.3:-41463027 None:intergenic
ACACTTGAATTCTGGATCAA+TGG 0.401212 7.3:-41463556 None:intergenic
ATACGAACGACTCCTCCTAA+TGG 0.405838 7.3:-41463715 None:intergenic
CCGGTAAATTCCACTGAGTT+CGG 0.407344 7.3:-41463277 None:intergenic
AAAGTCTTATTTGCTGAGGC+TGG 0.410372 7.3:+41462818 MS.gene89824:CDS
AGATGGACTAAGAACTTATA+TGG 0.410621 7.3:+41464095 MS.gene89824:CDS
AAGACTTGTTGATCCACATT+TGG 0.411738 7.3:+41463834 MS.gene89824:CDS
CCGAACTCAGTGGAATTTAC+CGG 0.415348 7.3:+41463277 MS.gene89824:CDS
GCGAGTGCGACTGAAACTTT+TGG 0.416530 7.3:+41462778 MS.gene89824:CDS
TTATCAAAGTGTGGTAGATC+TGG 0.451934 7.3:+41462958 MS.gene89824:CDS
CAACATATGAGGTACTTTGT+AGG 0.465366 7.3:-41463088 None:intergenic
TCTTACCTCCTTGATGCCAA+TGG 0.481755 7.3:-41464220 None:intergenic
AACATAGGACCTGTTACAAT+AGG 0.486685 7.3:+41462920 MS.gene89824:CDS
AAATGATGATGGTTATATCA+AGG 0.487223 7.3:+41464071 MS.gene89824:CDS
AATTCCTCTTGATGATATGA+AGG 0.487396 7.3:+41464185 MS.gene89824:CDS
CACTTATTGACCAATGTTGA+GGG 0.487959 7.3:+41464403 MS.gene89824:CDS
GATGACTACTAACTAGGTTC+AGG 0.489314 7.3:-41464032 None:intergenic
AATCAAACCTGCAACATATG+AGG 0.493783 7.3:-41463099 None:intergenic
GCAGTTATGAGAAACATGTT+AGG 0.494533 7.3:+41464007 MS.gene89824:CDS
TCATCATCCGCTCTAACAAA+TGG 0.494553 7.3:+41464373 MS.gene89824:CDS
TCTCAACGTCACTAAAGAAA+AGG 0.500041 7.3:+41463357 MS.gene89824:CDS
TTCACACGAGGCTCTTGAAT+AGG 0.500243 7.3:-41463889 None:intergenic
ATTTGGGATGACTACTAACT+AGG 0.512518 7.3:-41464038 None:intergenic
AAGAAAATTGAACGACTCAA+AGG 0.512615 7.3:-41463184 None:intergenic
GGGAAAGGATTTGTCCAAGA+AGG 0.513095 7.3:+41463217 MS.gene89824:CDS
AAGGAAAAGCTTGTCACCAT+TGG 0.514654 7.3:+41464204 MS.gene89824:CDS
AAGTCTTATTTGCTGAGGCT+GGG 0.515962 7.3:+41462819 MS.gene89824:CDS
GTACAGAAGGACTCAAACAT+AGG 0.519714 7.3:+41462905 MS.gene89824:CDS
AGTTTCTTGACATTGCCGTT+AGG 0.520091 7.3:+41462866 MS.gene89824:CDS
AAACGACATAAGTTCAGTAA+AGG 0.520548 7.3:+41463327 MS.gene89824:CDS
TTACTCACATTTCCATTAGG+AGG 0.523531 7.3:+41463703 MS.gene89824:CDS
GCTTGTCACCATTGGCATCA+AGG 0.526563 7.3:+41464212 MS.gene89824:CDS
AAAATAGAAAATGTAGAAGA+TGG 0.529603 7.3:-41464141 None:intergenic
AGTCATCCCAAATCACCTAA+AGG 0.545154 7.3:+41464048 MS.gene89824:CDS
TCACTTATTGACCAATGTTG+AGG 0.547008 7.3:+41464402 MS.gene89824:CDS
TGTTCTATGGGCAACATCGA+TGG 0.547814 7.3:+41463751 MS.gene89824:CDS
GATGGTTATATCAAGGGAGA+TGG 0.548149 7.3:+41464078 MS.gene89824:CDS
AATGATGATGGTTATATCAA+GGG 0.548455 7.3:+41464072 MS.gene89824:CDS
TGTTTGAATAGTTGCAGCCA+TGG 0.548888 7.3:-41462750 None:intergenic
TCACCTAAAGGAAATGATGA+TGG 0.552139 7.3:+41464060 MS.gene89824:CDS
TTGAAGTAAGGTGCCAAATG+TGG 0.553286 7.3:-41463847 None:intergenic
TTATATGGTAACAGATGACT+TGG 0.560415 7.3:+41464110 MS.gene89824:CDS
TTAGGAGGGAACTGTTCTAT+GGG 0.561101 7.3:+41463739 MS.gene89824:CDS
GGAGTCGTTCGTATATTAGG+AGG 0.577097 7.3:+41463724 MS.gene89824:CDS
CTTCTGTACGAGTCTTGCAA+TGG 0.578110 7.3:-41462891 None:intergenic
GGCAAGATATTGTATGCTCA+AGG 0.582361 7.3:+41463649 MS.gene89824:CDS
CAACAAAGTCTTATTTGCTG+AGG 0.606736 7.3:+41462814 MS.gene89824:CDS
CATTGCAAGACTCGTACAGA+AGG 0.606928 7.3:+41462892 MS.gene89824:CDS
CTAGTTTATAGAAAATCAGA+TGG 0.609106 7.3:+41463628 MS.gene89824:CDS
ACGAAGACCATTTGTTAGAG+CGG 0.622268 7.3:-41464380 None:intergenic
CTTATTGACCAATGTTGAGG+GGG 0.626193 7.3:+41464405 MS.gene89824:CDS
AGTCTTGCAATGGTTCCTAA+CGG 0.648370 7.3:-41462881 None:intergenic
GAGTCGTTCGTATATTAGGA+GGG 0.655143 7.3:+41463725 MS.gene89824:CDS
GATTGTCAAGCCGAACTCAG+TGG 0.657456 7.3:+41463267 MS.gene89824:CDS
GGCTGCAACTATTCAAACAG+AGG 0.663570 7.3:+41462754 MS.gene89824:CDS
ACTTATTGACCAATGTTGAG+GGG 0.669366 7.3:+41464404 MS.gene89824:CDS
TAACAATAATGCTTCACACG+AGG 0.697194 7.3:-41463901 None:intergenic
TGTCACCATTGGCATCAAGG+AGG 0.741971 7.3:+41464215 MS.gene89824:CDS
TGGTTTGTACAAGAGCATAG+CGG 0.742308 7.3:+41463771 MS.gene89824:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAAGTTTCAAACTTTT+CGG + chr7.3:41463926-41463945 MS.gene89824:CDS 15.0%
!!! CAATTTTCTTAAAACATTTT+GGG + chr7.3:41463197-41463216 MS.gene89824:CDS 15.0%
!!! TCAATTTTCTTAAAACATTT+TGG + chr7.3:41463196-41463215 MS.gene89824:CDS 15.0%
!! AAAATAGAAAATGTAGAAGA+TGG - chr7.3:41464144-41464163 None:intergenic 20.0%
!!! ATCAATGTTAAGTTTAAGAT+TGG - chr7.3:41463059-41463078 None:intergenic 20.0%
!!! TAATAAGTTTCAAACTTTTC+GGG + chr7.3:41463927-41463946 MS.gene89824:CDS 20.0%
! CTAGTTTATAGAAAATCAGA+TGG + chr7.3:41463628-41463647 MS.gene89824:CDS 25.0%
! CTTAGTATGCTTCAAAATTA+TGG + chr7.3:41463301-41463320 MS.gene89824:CDS 25.0%
! GAACGATTAATATTATGTAC+AGG + chr7.3:41463465-41463484 MS.gene89824:intron 25.0%
! TTCAACAAACAAAAACTGTA+TGG + chr7.3:41463153-41463172 MS.gene89824:CDS 25.0%
!!! AAATGATGATGGTTATATCA+AGG + chr7.3:41464071-41464090 MS.gene89824:CDS 25.0%
!!! AATGATGATGGTTATATCAA+GGG + chr7.3:41464072-41464091 MS.gene89824:CDS 25.0%
!!! CATAATTTTGAAGCATACTA+AGG - chr7.3:41463303-41463322 None:intergenic 25.0%
!!! TGCAAGTTTAATTTGAAGTA+AGG - chr7.3:41463862-41463881 None:intergenic 25.0%
!!! TTCTTAAAACATTTTGGGAA+AGG + chr7.3:41463202-41463221 MS.gene89824:CDS 25.0%
AAACGACATAAGTTCAGTAA+AGG + chr7.3:41463327-41463346 MS.gene89824:CDS 30.0%
AAGAAAATTGAACGACTCAA+AGG - chr7.3:41463187-41463206 None:intergenic 30.0%
AAGAGAAAACACTTGAATTC+TGG - chr7.3:41463567-41463586 None:intergenic 30.0%
AATCTTCAGAAGAGTTCTTT+GGG - chr7.3:41463030-41463049 None:intergenic 30.0%
ACAAACAAAAACTGTATGGA+TGG + chr7.3:41463157-41463176 MS.gene89824:CDS 30.0%
AGTTTACTCACATTTCCATT+AGG + chr7.3:41463700-41463719 MS.gene89824:CDS 30.0%
ATCATTTCCTTTAGGTGATT+TGG - chr7.3:41464058-41464077 None:intergenic 30.0%
TAACAAAAGTAACACCTTCT+TGG - chr7.3:41463234-41463253 None:intergenic 30.0%
TAACCATCATCATTTCCTTT+AGG - chr7.3:41464066-41464085 None:intergenic 30.0%
TAATCTTCAGAAGAGTTCTT+TGG - chr7.3:41463031-41463050 None:intergenic 30.0%
TCATTTCCTTTAGGTGATTT+GGG - chr7.3:41464057-41464076 None:intergenic 30.0%
TTATATGGTAACAGATGACT+TGG + chr7.3:41464110-41464129 MS.gene89824:CDS 30.0%
TTCAAACAACCTATTGTAAC+AGG - chr7.3:41462932-41462951 None:intergenic 30.0%
! AATTCCTCTTGATGATATGA+AGG + chr7.3:41464185-41464204 MS.gene89824:CDS 30.0%
! GAACTCATTTTATCAAAGTG+TGG + chr7.3:41462949-41462968 MS.gene89824:CDS 30.0%
! TTTTCATTAGCGATGAAGAT+AGG + chr7.3:41463971-41463990 MS.gene89824:CDS 30.0%
! TTTTCCTTCATATCATCAAG+AGG - chr7.3:41464192-41464211 None:intergenic 30.0%
!! AGATGGACTAAGAACTTATA+TGG + chr7.3:41464095-41464114 MS.gene89824:CDS 30.0%
!! GATTGTTTCTGCATCAATAA+TGG + chr7.3:41463118-41463137 MS.gene89824:CDS 30.0%
AACATAGGACCTGTTACAAT+AGG + chr7.3:41462920-41462939 MS.gene89824:CDS 35.0%
AATCAAACCTGCAACATATG+AGG - chr7.3:41463102-41463121 None:intergenic 35.0%
ACACTTGAATTCTGGATCAA+TGG - chr7.3:41463559-41463578 None:intergenic 35.0%
ACTTATTGACCAATGTTGAG+GGG + chr7.3:41464404-41464423 MS.gene89824:CDS 35.0%
CACTTATTGACCAATGTTGA+GGG + chr7.3:41464403-41464422 MS.gene89824:CDS 35.0%
CTCAGCAAATAAGACTTTGT+TGG - chr7.3:41462816-41462835 None:intergenic 35.0%
GCAGTTATGAGAAACATGTT+AGG + chr7.3:41464007-41464026 MS.gene89824:CDS 35.0%
TAACAATAATGCTTCACACG+AGG - chr7.3:41463904-41463923 None:intergenic 35.0%
TCACCTAAAGGAAATGATGA+TGG + chr7.3:41464060-41464079 MS.gene89824:CDS 35.0%
TCACTTATTGACCAATGTTG+AGG + chr7.3:41464402-41464421 MS.gene89824:CDS 35.0%
TCTCAACGTCACTAAAGAAA+AGG + chr7.3:41463357-41463376 MS.gene89824:CDS 35.0%
TTACTCACATTTCCATTAGG+AGG + chr7.3:41463703-41463722 MS.gene89824:CDS 35.0%
TTATCAAAGTGTGGTAGATC+TGG + chr7.3:41462958-41462977 MS.gene89824:CDS 35.0%
! ATTTGGGATGACTACTAACT+AGG - chr7.3:41464041-41464060 None:intergenic 35.0%
! CAACATATGAGGTACTTTGT+AGG - chr7.3:41463091-41463110 None:intergenic 35.0%
! TCTCTGACAGATTTGTTTCT+AGG + chr7.3:41463526-41463545 MS.gene89824:CDS 35.0%
!! AAGACTTGTTGATCCACATT+TGG + chr7.3:41463834-41463853 MS.gene89824:CDS 35.0%
!! CAACAAAGTCTTATTTGCTG+AGG + chr7.3:41462814-41462833 MS.gene89824:CDS 35.0%
!!! ATTTTGAAGCATACTAAGGC+CGG - chr7.3:41463299-41463318 None:intergenic 35.0%
AAGGAAAAGCTTGTCACCAT+TGG + chr7.3:41464204-41464223 MS.gene89824:CDS 40.0%
AGTCATCCCAAATCACCTAA+AGG + chr7.3:41464048-41464067 MS.gene89824:CDS 40.0%
AGTCTTGCAATGGTTCCTAA+CGG - chr7.3:41462884-41462903 None:intergenic 40.0%
AGTTTCTTGACATTGCCGTT+AGG + chr7.3:41462866-41462885 MS.gene89824:CDS 40.0%
ATTAGGAGGGAACTGTTCTA+TGG + chr7.3:41463738-41463757 MS.gene89824:CDS 40.0%
CTTATTGACCAATGTTGAGG+GGG + chr7.3:41464405-41464424 MS.gene89824:CDS 40.0%
GAAGATAGGAGTCGTGAATA+TGG + chr7.3:41463985-41464004 MS.gene89824:CDS 40.0%
GAGTCGTTCGTATATTAGGA+GGG + chr7.3:41463725-41463744 MS.gene89824:CDS 40.0%
GATGACTACTAACTAGGTTC+AGG - chr7.3:41464035-41464054 None:intergenic 40.0%
GATGGTTATATCAAGGGAGA+TGG + chr7.3:41464078-41464097 MS.gene89824:CDS 40.0%
GCAGTGTCTGAGCATATTAA+AGG + chr7.3:41464339-41464358 MS.gene89824:intron 40.0%
GGCAAGATATTGTATGCTCA+AGG + chr7.3:41463649-41463668 MS.gene89824:CDS 40.0%
GTACAGAAGGACTCAAACAT+AGG + chr7.3:41462905-41462924 MS.gene89824:CDS 40.0%
TCATCATCCGCTCTAACAAA+TGG + chr7.3:41464373-41464392 MS.gene89824:CDS 40.0%
TTAGGAGGGAACTGTTCTAT+GGG + chr7.3:41463739-41463758 MS.gene89824:CDS 40.0%
! ACGAAGACCATTTGTTAGAG+CGG - chr7.3:41464383-41464402 None:intergenic 40.0%
! CAAAGTACCTCATATGTTGC+AGG + chr7.3:41463092-41463111 MS.gene89824:CDS 40.0%
! TGGTTTGTACAAGAGCATAG+CGG + chr7.3:41463771-41463790 MS.gene89824:CDS 40.0%
! TTGAAGTAAGGTGCCAAATG+TGG - chr7.3:41463850-41463869 None:intergenic 40.0%
!! AAAGTCTTATTTGCTGAGGC+TGG + chr7.3:41462818-41462837 MS.gene89824:CDS 40.0%
!! AAGTCTTATTTGCTGAGGCT+GGG + chr7.3:41462819-41462838 MS.gene89824:CDS 40.0%
ATACGAACGACTCCTCCTAA+TGG - chr7.3:41463718-41463737 None:intergenic 45.0%
CATTGCAAGACTCGTACAGA+AGG + chr7.3:41462892-41462911 MS.gene89824:CDS 45.0%
CCGAACTCAGTGGAATTTAC+CGG + chr7.3:41463277-41463296 MS.gene89824:CDS 45.0%
CCGGTAAATTCCACTGAGTT+CGG - chr7.3:41463280-41463299 None:intergenic 45.0%
CTTCTGTACGAGTCTTGCAA+TGG - chr7.3:41462894-41462913 None:intergenic 45.0%
GGAGGAGTCGTTCGTATATT+AGG + chr7.3:41463721-41463740 MS.gene89824:CDS 45.0%
GGAGTCGTTCGTATATTAGG+AGG + chr7.3:41463724-41463743 MS.gene89824:CDS 45.0%
GGCTGCAACTATTCAAACAG+AGG + chr7.3:41462754-41462773 MS.gene89824:CDS 45.0%
GGGAAAGGATTTGTCCAAGA+AGG + chr7.3:41463217-41463236 MS.gene89824:CDS 45.0%
TCTTACCTCCTTGATGCCAA+TGG - chr7.3:41464223-41464242 None:intergenic 45.0%
TGTTCTATGGGCAACATCGA+TGG + chr7.3:41463751-41463770 MS.gene89824:CDS 45.0%
TTCACACGAGGCTCTTGAAT+AGG - chr7.3:41463892-41463911 None:intergenic 45.0%
CTCAGACACTGCAACAACAC+AGG - chr7.3:41464331-41464350 None:intergenic 50.0%
GATTGTCAAGCCGAACTCAG+TGG + chr7.3:41463267-41463286 MS.gene89824:CDS 50.0%
GCTTGTCACCATTGGCATCA+AGG + chr7.3:41464212-41464231 MS.gene89824:CDS 50.0%
TGTCACCATTGGCATCAAGG+AGG + chr7.3:41464215-41464234 MS.gene89824:CDS 50.0%
! GCGAGTGCGACTGAAACTTT+TGG + chr7.3:41462778-41462797 MS.gene89824:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 41462752 41464432 41462752 ID=MS.gene89824
chr7.3 mRNA 41462752 41464432 41462752 ID=MS.gene89824.t1;Parent=MS.gene89824
chr7.3 exon 41462752 41463378 41462752 ID=MS.gene89824.t1.exon1;Parent=MS.gene89824.t1
chr7.3 CDS 41462752 41463378 41462752 ID=cds.MS.gene89824.t1;Parent=MS.gene89824.t1
chr7.3 exon 41463487 41464236 41463487 ID=MS.gene89824.t1.exon2;Parent=MS.gene89824.t1
chr7.3 CDS 41463487 41464236 41463487 ID=cds.MS.gene89824.t1;Parent=MS.gene89824.t1
chr7.3 exon 41464343 41464432 41464343 ID=MS.gene89824.t1.exon3;Parent=MS.gene89824.t1
chr7.3 CDS 41464343 41464432 41464343 ID=cds.MS.gene89824.t1;Parent=MS.gene89824.t1
Gene Sequence

>MS.gene89824

ATGGCTGCAACTATTCAAACAGAGGAGCGAGTGCGACTGAAACTTTTGGTGAACAAAGAAACCAACAAAGTCTTATTTGCTGAGGCTGGGAAAGACTTTGTCGATGTTCTATTTAGTTTCTTGACATTGCCGTTAGGAACCATTGCAAGACTCGTACAGAAGGACTCAAACATAGGACCTGTTACAATAGGTTGTTTGAACTCATTTTATCAAAGTGTGGTAGATCTGGACGAAGAGTGTATGCAGACTGAGACAAGCAAAGAAATGATATTACACCCAAAGAACTCTTCTGAAGATTATTGCACCAATCTTAAACTTAACATTGATGACACTCAGCCTACAAAGTACCTCATATGTTGCAGGTTTGATTGTTTCTGCATCAATAATGGTTATTTCTACAATTCAACAAACAAAAACTGTATGGATGGAAAACCTTTGAGTCGTTCAATTTTCTTAAAACATTTTGGGAAAGGATTTGTCCAAGAAGGTGTTACTTTTGTTATTTCTGATGATCTGATTGTCAAGCCGAACTCAGTGGAATTTACCGGCCTTAGTATGCTTCAAAATTATGGAATAAACGACATAAGTTCAGTAAAGGAAATGACTCTCAACGTCACTAAAGAAAAGGTTATATATTTTATAGTTGTGTTCGCTAATTTATTACTTGCTTCACATACATCTCTTTTTTTAATTTTTGTCATCAATTCATTTTTGAACGATTAATATTATGTACAGGTACTCGATCTTTTAAAGTGTGCTTTGCTTTCGAAGTCGTCTCTGACAGATTTGTTTCTAGGAAAGAAACCATTGATCCAGAATTCAAGTGTTTTCTCTTGTAATGTTGCAAATAGTAGTAATATCAAAATCAGATTGAAGCTAGTTTATAGAAAATCAGATGGCAAGATATTGTATGCTCAAGGAGAAAAAGATTTTGCAGACTTGCTTTTAAGTTTACTCACATTTCCATTAGGAGGAGTCGTTCGTATATTAGGAGGGAACTGTTCTATGGGCAACATCGATGGTTTGTACAAGAGCATAGCGGATTTGCATGAAAACACATATTTGTCAAGAGAAGCAAAGAAAAGACTTGTTGATCCACATTTGGCACCTTACTTCAAATTAAACTTGCAGATATTACCTATTCAAGAGCCTCGTGTGAAGCATTATTGTTACTATAATAAGTTTCAAACTTTTCGGGATAGTGTTATTCATAATCAATTTTTCATTAGCGATGAAGATAGGAGTCGTGAATATGGCAGTTATGAGAAACATGTTAGGTACCTGAACCTAGTTAGTAGTCATCCCAAATCACCTAAAGGAAATGATGATGGTTATATCAAGGGAGATGGACTAAGAACTTATATGGTAACAGATGACTTGGTCATTGCACCATCTTCTACATTTTCTATTTTACATTTAATCAACAATTTCAAAATTCCTCTTGATGATATGAAGGAAAAGCTTGTCACCATTGGCATCAAGGAGGTAAGAAAGAACATAATCTATTCATAGATCTATGTTTTGTGTTATTTTATTTGTTAGATTGATTGAATGTATTTACTGCTAACTATATATTCCTGTGTTGTTGCAGTGTCTGAGCATATTAAAGGCAGCTTTGTCGTCATCATCCGCTCTAACAAATGGTCTTCGTCACTTATTGACCAATGTTGAGGGGGAGTAA
Protein sequence

>MS.gene89824.t1

MAATIQTEERVRLKLLVNKETNKVLFAEAGKDFVDVLFSFLTLPLGTIARLVQKDSNIGPVTIGCLNSFYQSVVDLDEECMQTETSKEMILHPKNSSEDYCTNLKLNIDDTQPTKYLICCRFDCFCINNGYFYNSTNKNCMDGKPLSRSIFLKHFGKGFVQEGVTFVISDDLIVKPNSVEFTGLSMLQNYGINDISSVKEMTLNVTKEKVLDLLKCALLSKSSLTDLFLGKKPLIQNSSVFSCNVANSSNIKIRLKLVYRKSDGKILYAQGEKDFADLLLSLLTFPLGGVVRILGGNCSMGNIDGLYKSIADLHENTYLSREAKKRLVDPHLAPYFKLNLQILPIQEPRVKHYCYYNKFQTFRDSVIHNQFFISDEDRSREYGSYEKHVRYLNLVSSHPKSPKGNDDGYIKGDGLRTYMVTDDLVIAPSSTFSILHLINNFKIPLDDMKEKLVTIGIKECLSILKAALSSSSALTNGLRHLLTNVEGE