AlfalfaGEDB | MS.gene96849

M. sativa cultivar XinJiangDaYe / MS.gene96849

KEGG: -
GO: -
PFAM: PF05056.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96849.t1	PNY13838.1	72.2	482	119	4	1	467	1	482	1.70E-187	665.6

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96849.t1	A0A2K3PEW0	72.2	482	119	4	1	467	1	482	1.2e-187	665.6

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene001103	MS.gene96849	PPI
MS.gene001108	MS.gene96849	PPI
MS.gene001109	MS.gene96849	PPI
MS.gene007488	MS.gene96849	PPI
MS.gene009400	MS.gene96849	PPI
MS.gene010675	MS.gene96849	PPI
MS.gene037535	MS.gene96849	PPI
MS.gene037539	MS.gene96849	PPI
MS.gene037540	MS.gene96849	PPI
MS.gene037545	MS.gene96849	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96849.t1	MTR_7g062300	71.247	473	121	7	1	459	1	472	0.0	641
MS.gene96849.t1	MTR_7g062280	67.137	496	124	5	5	467	3	492	0.0	634
MS.gene96849.t1	MTR_7g063920	70.975	472	97	6	1	467	1	437	0.0	625
MS.gene96849.t1	MTR_7g063840	55.180	473	196	5	8	467	5	474	3.56e-169	484
MS.gene96849.t1	MTR_7g063880	57.054	482	177	10	1	466	1	468	3.37e-163	469
MS.gene96849.t1	MTR_7g063900	55.242	496	186	11	1	467	1	489	1.57e-160	463
MS.gene96849.t1	MTR_7g063660	52.941	476	201	6	11	467	7	478	1.27e-155	450
MS.gene96849.t1	MTR_7g063820	51.417	494	197	10	6	467	3	485	1.36e-147	430
MS.gene96849.t1	MTR_3g007740	54.334	473	163	11	8	461	5	443	1.77e-143	418
MS.gene96849.t1	MTR_7g063830	52.220	473	190	11	1	466	1	444	2.48e-143	418

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene96849.t1	AT5G01130	33.194	479	268	10	9	467	5	451	2.41e-67	223
MS.gene96849.t1	AT5G01120	34.686	493	263	15	10	456	6	485	4.11e-67	224
MS.gene96849.t1	AT3G09140	33.398	515	276	14	1	465	1	498	6.83e-67	223
MS.gene96849.t1	AT5G01150	32.389	494	287	10	9	467	5	486	2.24e-65	219
MS.gene96849.t1	AT3G09140	31.676	543	276	15	1	465	1	526	6.73e-62	210
MS.gene96849.t1	AT5G01140	30.285	492	272	13	9	467	5	458	1.66e-57	197
MS.gene96849.t1	AT3G09110	36.391	338	198	8	10	337	6	336	4.81e-57	192
MS.gene96849.t1	AT5G43240	32.863	496	264	14	14	456	10	489	5.69e-55	191
MS.gene96849.t1	AT5G43240	32.863	496	264	14	14	456	10	489	5.69e-55	191
MS.gene96849.t1	AT5G43240	32.863	496	264	14	14	456	10	489	5.69e-55	191

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Find 85 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATGTGAAGTACTTGG+TGG	0.581761	7.3:+42853689	None:intergenic
AAACATGTGAAGTACTTGGT+GGG	0.707560	7.3:+42853690	None:intergenic
AAACTCACTCTATAAAAGTG+TGG	0.625241	7.3:-42853829	MS.gene96849:CDS
AAAGCTGATGAAGATAATTG+CGG	0.643142	7.3:-42852723	MS.gene96849:CDS
AAAGTCTTGTTTGCAGAAGC+AGG	0.447416	7.3:-42853960	MS.gene96849:CDS
AACACCTCTTGATGATTTGA+AGG	0.389867	7.3:-42852565	MS.gene96849:CDS
AACATTTCCTTCACCAAACT+TGG	0.329978	7.3:+42853453	None:intergenic
AACCATCTGTTGGGGTTGGC+AGG	0.416063	7.3:-42853130	MS.gene96849:CDS
AACCTGCCAACCCCAACAGA+TGG	0.601175	7.3:+42853128	None:intergenic
AAGAAACCATCTGTTGGGGT+TGG	0.563173	7.3:-42853134	MS.gene96849:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAACTCACTCTATAAAAGTG+TGG	-	chr7.3:42852533-42852552	MS.gene96849:intron	30.0%
AAAGCTGATGAAGATAATTG+CGG	-	chr7.3:42853639-42853658	MS.gene96849:CDS	30.0%
AATATCTGTCAAAGTAGACT+TGG	+	chr7.3:42853199-42853218	None:intergenic	30.0%
ACAGTAATATTCCAGAACAT+CGG	+	chr7.3:42853586-42853605	None:intergenic	30.0%
AGCTTTCTTACTATTCCTTT+GGG	-	chr7.3:42853378-42853397	MS.gene96849:intron	30.0%
AGTAAACCTATAGCTGAAAT+TGG	+	chr7.3:42853765-42853784	None:intergenic	30.0%
TCTCAATGTCACTAAAGAAA+AGG	-	chr7.3:42852932-42852951	MS.gene96849:CDS	30.0%
TGCTTGCTTAATGTTAAATG+CGG	+	chr7.3:42853543-42853562	None:intergenic	30.0%
TGGAATTAAAAACCCAAGTT+TGG	-	chr7.3:42852896-42852915	MS.gene96849:CDS	30.0%
TTCGTTCAAAAGAAGTTTCA+AGG	+	chr7.3:42852373-42852392	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	42852327	42854057	42852327	ID=MS.gene96849
chr7.3	mRNA	42852327	42854057	42852327	ID=MS.gene96849.t1;Parent=MS.gene96849
chr7.3	exon	42853431	42854057	42853431	ID=MS.gene96849.t1.exon1;Parent=MS.gene96849.t1
chr7.3	CDS	42853431	42854057	42853431	ID=cds.MS.gene96849.t1;Parent=MS.gene96849.t1
chr7.3	exon	42852536	42853219	42852536	ID=MS.gene96849.t1.exon2;Parent=MS.gene96849.t1
chr7.3	CDS	42852536	42853219	42852536	ID=cds.MS.gene96849.t1;Parent=MS.gene96849.t1
chr7.3	exon	42852327	42852419	42852327	ID=MS.gene96849.t1.exon3;Parent=MS.gene96849.t1
chr7.3	CDS	42852327	42852419	42852327	ID=cds.MS.gene96849.t1;Parent=MS.gene96849.t1

Gene Sequence

>MS.gene96849

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAAAGGTAACAAAGTCTTGTTTGCAGAAGCAGGTAAGGACTTTGTGGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTGACATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAAAAGTGTGGCAGATCTTGATGATGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATTGCAACACTCTTAAACTCAACATTGACGACACTCAACCCACCAAGTACTTCACATGTTTTTACTACGCTCATGATTTGATAAAATCAACAATTAAAGATACATCTAAGTGTCGCTGTGGGAATTCTTTGTCCTATCAAGTTTTGCCTAAACAATTCCGTCGAGGATTTGTTAATGGTGTTGCTACTTTTGTGATAACTGATGATCTGAATGTCATTCCAAGTTGTATTGACAATGCAAGCTTTGGGCTACTCCAGGAATTTGGAATTAAAAACCCAAGTTTGGTGAAGGAAATGTTTCTCAATGTCACTAAAGAAAAGGTTTTGTATTTGAATTTCTATTCCCTAAATTTTTGCTTTTGTTTGTTTTTTGAATGAACAATGTCAGAGTTATTTTGTGGGTGGAGATATATAATCCCTGACCTTCTAAGTAGCCCACTTCTCTACAACCACCTCTCTTAACTTTAAATATTGCTATTTTTTTTTTTTTATCAATTATGTTTGCTAATTTTTCTATTACGAATTGATATAGGTACTTGATTTACTAAAATGCTCTTTGCTCTCCAAGTCTACTTTGACAGATATTTTTTTTGGGAAGAAACCATCTGTTGGGGTTGGCAGGTTTTTCTCATGTAATGTTGAAATTAGTGGCAATATGCAAATCATTTTAAAACTAGTTATAAGAAAATCTGATGGCAAGATCCTTTGTGCTCAAGGGGAACAAGATTTTGCAGACTTACTTTTGAGCTTTCTTACTATTCCTTTGGGACGAATTACTCGTATTTTTGGAGAGAATTGTTCGTTGGGCAGCATTAATCGATTCATCAAGAGTGTAGCTGATTTAAATGAAAAGAAATATTTCATATCGAAAGCAGCTAAGAATAGGATTGTTGATCCTTGCATTTCCCCGCATTTAACATTAAGCAAGCAAATATTACCAATTCTTGAGCCCGATGTTCTGGAATATTACTGTTTTAGTGATAATGGTATTTGTTTACATTATTCCAAAGCTGATGAAGATAATTGCGGAAAGTTAATGAATTTATTAAAAGGGGTCACTCATGAAGGTTATGTCAAGGGTCCAGCTATGTACGTTGCTACTGATGATTTGGTCATTGCACCCTTGTCTCCAATTTCAGCTATAGGTTTACTTAACCGTTTCAAAACACCTCTTGATGATTTGAAGGAAAAGGTTGTCACCATTGGAGTTAAGGAGGTAAGAAATTGTAAAAATTGCTAGTGTAGATTTTTATGCTCATTTTTGAATGCATTTATTTACTTGGATACTAGAATTTAACTATGGCTTATATTTACCTTTCTTATTGTTTTCAGGCTCTCAGTATATTGAATGCTGCTTTAACTTCAACATCCGCACTCACAAATGGTCTGGCCCACCTGTTAACTGAAGTTAAAAAAGAGAAGTGA

Protein sequence

>MS.gene96849.t1

MAATTSTQAEEQHVSLKLLLNEKGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESDIGQVTVGCLNSLYKSVADLDDGCFSTEAIKQMLLQPINSAEDYCNTLKLNIDDTQPTKYFTCFYYAHDLIKSTIKDTSKCRCGNSLSYQVLPKQFRRGFVNGVATFVITDDLNVIPSCIDNASFGLLQEFGIKNPSLVKEMFLNVTKEKVLDLLKCSLLSKSTLTDIFFGKKPSVGVGRFFSCNVEISGNMQIILKLVIRKSDGKILCAQGEQDFADLLLSFLTIPLGRITRIFGENCSLGSINRFIKSVADLNEKKYFISKAAKNRIVDPCISPHLTLSKQILPILEPDVLEYYCFSDNGICLHYSKADEDNCGKLMNLLKGVTHEGYVKGPAMYVATDDLVIAPLSPISAIGLLNRFKTPLDDLKEKVVTIGVKEALSILNAALTSTSALTNGLAHLLTEVKKEK