AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96849

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96849.t1 MTR_7g062300 71.247 473 121 7 1 459 1 472 0.0 641
MS.gene96849.t1 MTR_7g062280 67.137 496 124 5 5 467 3 492 0.0 634
MS.gene96849.t1 MTR_7g063920 70.975 472 97 6 1 467 1 437 0.0 625
MS.gene96849.t1 MTR_7g063840 55.180 473 196 5 8 467 5 474 3.56e-169 484
MS.gene96849.t1 MTR_7g063880 57.054 482 177 10 1 466 1 468 3.37e-163 469
MS.gene96849.t1 MTR_7g063900 55.242 496 186 11 1 467 1 489 1.57e-160 463
MS.gene96849.t1 MTR_7g063660 52.941 476 201 6 11 467 7 478 1.27e-155 450
MS.gene96849.t1 MTR_7g063820 51.417 494 197 10 6 467 3 485 1.36e-147 430
MS.gene96849.t1 MTR_3g007740 54.334 473 163 11 8 461 5 443 1.77e-143 418
MS.gene96849.t1 MTR_7g063830 52.220 473 190 11 1 466 1 444 2.48e-143 418
MS.gene96849.t1 MTR_7g063670 51.992 477 180 10 10 467 12 458 7.81e-140 409
MS.gene96849.t1 MTR_7g063890 52.156 487 195 9 11 466 25 504 7.59e-133 393
MS.gene96849.t1 MTR_7g066570 40.650 492 253 9 3 464 2 484 2.36e-106 327
MS.gene96849.t1 MTR_3g065200 43.478 460 181 12 13 447 3 408 1.28e-105 322
MS.gene96849.t1 MTR_7g066260 42.589 479 239 10 1 460 1 462 2.25e-102 315
MS.gene96849.t1 MTR_7g066410 36.452 513 263 10 9 462 6 514 8.06e-96 298
MS.gene96849.t1 MTR_7g066430 39.709 481 256 7 14 460 5 485 1.22e-94 295
MS.gene96849.t1 MTR_7g066480 40.773 466 212 9 12 466 15 427 2.87e-94 291
MS.gene96849.t1 MTR_7g012680 39.583 480 246 9 3 467 2 452 1.18e-93 291
MS.gene96849.t1 MTR_7g066340 38.365 477 250 10 3 460 2 453 1.37e-90 284
MS.gene96849.t1 MTR_7g058710 35.953 509 259 11 1 467 1 484 1.67e-90 284
MS.gene96849.t1 MTR_7g066290 39.832 477 226 9 1 460 1 433 2.01e-88 277
MS.gene96849.t1 MTR_7g066360 41.004 478 224 14 3 456 2 445 1.29e-87 276
MS.gene96849.t1 MTR_7g066490 39.254 456 205 9 13 460 16 407 1.02e-86 272
MS.gene96849.t1 MTR_7g066350 37.684 475 250 10 9 462 2 451 9.28e-84 265
MS.gene96849.t1 MTR_7g066580 35.524 487 233 11 19 463 1 448 2.41e-82 261
MS.gene96849.t1 MTR_7g066580 26.016 246 137 8 10 227 212 440 1.76e-12 69.3
MS.gene96849.t1 MTR_7g066400 35.504 476 253 9 3 462 2 439 3.47e-79 253
MS.gene96849.t1 MTR_7g063720 53.586 237 104 4 232 467 2 233 1.93e-78 244
MS.gene96849.t1 MTR_7g063720 29.167 240 150 9 8 245 18 239 3.58e-17 81.3
MS.gene96849.t1 MTR_4g019310 36.273 499 271 15 10 467 5 497 3.07e-76 247
MS.gene96849.t1 MTR_1g041315 34.526 475 253 11 3 444 2 451 1.10e-73 240
MS.gene96849.t1 MTR_7g062270 62.842 183 64 1 6 184 3 185 3.41e-73 236
MS.gene96849.t1 MTR_7g062270 29.586 169 102 6 253 406 11 177 6.53e-11 64.3
MS.gene96849.t1 MTR_7g058700 34.829 468 210 8 25 467 531 928 2.76e-70 240
MS.gene96849.t1 MTR_7g066310 33.846 455 214 7 14 460 8 383 3.45e-69 226
MS.gene96849.t1 MTR_7g063850 44.337 309 130 9 179 466 1 288 4.01e-61 201
MS.gene96849.t1 MTR_2g029400 32.135 473 230 10 1 450 1 405 5.27e-61 204
MS.gene96849.t1 MTR_4g017610 32.383 491 281 15 1 456 1 475 3.02e-58 199
MS.gene96849.t1 MTR_4g017830 30.975 523 285 16 3 466 2 507 6.92e-56 194
MS.gene96849.t1 MTR_4g017410 32.335 501 287 15 6 466 2 490 4.44e-55 191
MS.gene96849.t1 MTR_4g019340 31.481 486 265 15 11 448 36 501 3.38e-54 189
MS.gene96849.t1 MTR_4g019340 29.437 231 132 9 2 221 292 502 1.34e-13 73.2
MS.gene96849.t1 MTR_7g063690 42.349 281 98 5 3 279 2 222 7.39e-54 181
MS.gene96849.t1 MTR_4g017440 29.746 511 298 14 7 466 8 508 7.73e-51 180
MS.gene96849.t1 MTR_4g017470 29.492 512 276 15 3 466 2 476 4.90e-50 177
MS.gene96849.t1 MTR_7g066280 31.540 409 221 10 92 460 1 390 5.90e-45 162
MS.gene96849.t1 MTR_1g014060 44.390 205 104 5 22 219 9 210 2.25e-44 160
MS.gene96849.t1 MTR_1g014060 37.811 201 115 4 271 467 197 391 4.41e-31 124
MS.gene96849.t1 MTR_1g014060 26.887 212 137 6 265 460 13 222 4.62e-14 73.9
MS.gene96849.t1 MTR_7g066680 32.258 310 136 5 209 456 37 334 3.27e-35 134
MS.gene96849.t1 MTR_7g066680 31.217 189 108 8 7 182 80 259 5.10e-14 73.6
MS.gene96849.t1 MTR_7g100420 32.919 322 189 4 150 456 84 393 6.92e-35 134
MS.gene96849.t1 MTR_7g100420 71.739 46 13 0 11 56 37 82 1.70e-12 69.3
MS.gene96849.t1 MTR_4g017550 28.238 471 259 18 43 456 21 469 1.14e-34 135
MS.gene96849.t1 MTR_4g017550 28.854 253 132 10 14 243 248 475 1.14e-13 73.2
MS.gene96849.t1 MTR_8g023240 26.124 467 298 14 14 454 38 483 1.43e-34 136
MS.gene96849.t1 MTR_7g063760 64.865 74 25 1 395 467 1 74 4.89e-26 101
MS.gene96849.t1 MTR_1g115440 33.333 246 135 9 5 231 3 238 3.44e-24 101
MS.gene96849.t1 MTR_1g115440 28.571 224 138 5 252 454 11 233 1.56e-17 82.4
MS.gene96849.t1 MTR_8g445860 31.349 252 139 8 1 232 1 238 2.64e-23 98.6
MS.gene96849.t1 MTR_0150s0010 31.984 247 142 7 1 231 1 237 3.96e-20 89.7
MS.gene96849.t1 MTR_0150s0010 27.660 235 124 7 252 453 10 231 7.36e-16 77.4
MS.gene96849.t1 MTR_7g066390 54.795 73 33 0 388 460 50 122 1.07e-17 80.5
MS.gene96849.t1 MTR_2g067310 36.842 171 70 6 24 192 56 190 3.25e-16 78.6
MS.gene96849.t1 MTR_1g115455 29.921 254 135 9 1 232 1 233 5.03e-16 77.8
MS.gene96849.t1 MTR_7g063870 49.398 83 41 1 135 216 75 157 3.53e-14 72.8
MS.gene96849.t1 MTR_7g063870 56.140 57 24 1 6 62 25 80 1.63e-12 67.8
MS.gene96849.t1 MTR_1g115450 35.433 127 67 4 3 124 2 118 1.59e-11 62.4
MS.gene96849.t1 MTR_4g019240 34.545 110 64 2 1 102 1 110 2.10e-11 63.2
MS.gene96849.t1 MTR_7g063750 50.000 80 36 2 387 465 16 92 7.52e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96849.t1 AT5G01130 33.194 479 268 10 9 467 5 451 2.41e-67 223
MS.gene96849.t1 AT5G01120 34.686 493 263 15 10 456 6 485 4.11e-67 224
MS.gene96849.t1 AT3G09140 33.398 515 276 14 1 465 1 498 6.83e-67 223
MS.gene96849.t1 AT5G01150 32.389 494 287 10 9 467 5 486 2.24e-65 219
MS.gene96849.t1 AT3G09140 31.676 543 276 15 1 465 1 526 6.73e-62 210
MS.gene96849.t1 AT5G01140 30.285 492 272 13 9 467 5 458 1.66e-57 197
MS.gene96849.t1 AT3G09110 36.391 338 198 8 10 337 6 336 4.81e-57 192
MS.gene96849.t1 AT5G43240 32.863 496 264 14 14 456 10 489 5.69e-55 191
MS.gene96849.t1 AT5G43240 32.863 496 264 14 14 456 10 489 5.69e-55 191
MS.gene96849.t1 AT5G43240 32.863 496 264 14 14 456 10 489 5.69e-55 191
MS.gene96849.t1 AT3G09120 38.365 318 164 8 9 303 2 310 5.06e-52 178
MS.gene96849.t1 AT3G09120 26.407 231 135 6 252 454 6 229 5.79e-12 67.0
MS.gene96849.t1 AT5G37320 30.426 493 278 17 14 462 10 481 3.58e-42 156
MS.gene96849.t1 AT5G43240 28.788 330 183 9 164 456 31 345 1.25e-18 87.8

Find 85 sgRNAs with CRISPR-Local

Find 116 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCGTCGAGGATTTGTTAA+TGG 0.255342 7.3:-42853573 MS.gene96849:CDS
TTTGGGCTACTCCAGGAATT+TGG 0.263251 7.3:-42853486 MS.gene96849:CDS
GAGCTTTCTTACTATTCCTT+TGG 0.272514 7.3:-42852985 MS.gene96849:CDS
AAGTTAATGAATTTATTAAA+AGG 0.274967 7.3:-42852699 MS.gene96849:CDS
AGTAAACCTATAGCTGAAAT+TGG 0.306215 7.3:+42852600 None:intergenic
TCATGTAATGTTGAAATTAG+TGG 0.309011 7.3:-42853101 MS.gene96849:CDS
TTGTCTCCAATTTCAGCTAT+AGG 0.316501 7.3:-42852606 MS.gene96849:CDS
GCAATTATCTTCATCAGCTT+TGG 0.327171 7.3:+42852725 None:intergenic
AACATTTCCTTCACCAAACT+TGG 0.329978 7.3:+42853453 None:intergenic
TGTATTGACAATGCAAGCTT+TGG 0.346373 7.3:-42853504 MS.gene96849:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.3:+42853992 None:intergenic
GTACGTTGCTACTGATGATT+TGG 0.369070 7.3:-42852640 MS.gene96849:CDS
AATTCTTGAGCCCGATGTTC+TGG 0.371136 7.3:-42852790 MS.gene96849:CDS
AGCTTTCTTACTATTCCTTT+GGG 0.375218 7.3:-42852984 MS.gene96849:CDS
AACACCTCTTGATGATTTGA+AGG 0.389867 7.3:-42852565 MS.gene96849:CDS
GGTTGTCACCATTGGAGTTA+AGG 0.390924 7.3:-42852538 MS.gene96849:CDS
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.3:-42853895 MS.gene96849:CDS
AATCCTCGACGGAATTGTTT+AGG 0.391576 7.3:+42853582 None:intergenic
AGTTAATGAATTTATTAAAA+GGG 0.394655 7.3:-42852698 MS.gene96849:CDS
TTGGGAAGAAACCATCTGTT+GGG 0.404610 7.3:-42853139 MS.gene96849:CDS
TTGTTTAGGCAAAACTTGAT+AGG 0.406296 7.3:+42853596 None:intergenic
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.3:-42853912 MS.gene96849:CDS
AACCATCTGTTGGGGTTGGC+AGG 0.416063 7.3:-42853130 MS.gene96849:CDS
TAATCTTCCGCTGAGTTGAT+TGG 0.438608 7.3:+42853750 None:intergenic
TCTCAATGTCACTAAAGAAA+AGG 0.439665 7.3:-42853430 MS.gene96849:intron
TCTTGATGATTTGAAGGAAA+AGG 0.443248 7.3:-42852559 MS.gene96849:CDS
AGAACATCGGGCTCAAGAAT+TGG 0.444285 7.3:+42852792 None:intergenic
GTATTGACAATGCAAGCTTT+GGG 0.446570 7.3:-42853503 MS.gene96849:CDS
AAGGAAAAGGTTGTCACCAT+TGG 0.447263 7.3:-42852546 MS.gene96849:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.447416 7.3:-42853960 MS.gene96849:CDS
CAGTAATATTCCAGAACATC+GGG 0.450688 7.3:+42852780 None:intergenic
CTTGCATTGTCAATACAACT+TGG 0.467131 7.3:+42853510 None:intergenic
TATCGAAAGCAGCTAAGAAT+AGG 0.469444 7.3:-42852866 MS.gene96849:CDS
CTTGTTTGCAGAAGCAGGTA+AGG 0.477534 7.3:-42853955 MS.gene96849:CDS
GGCAAGATCCTTTGTGCTCA+AGG 0.479300 7.3:-42853035 MS.gene96849:CDS
TCAACATCCGCACTCACAAA+TGG 0.487975 7.3:-42852367 MS.gene96849:CDS
GTTAATGAATTTATTAAAAG+GGG 0.492023 7.3:-42852697 MS.gene96849:CDS
ATCCGCACTCACAAATGGTC+TGG 0.494111 7.3:-42852362 MS.gene96849:CDS
TTAAAAGGGGTCACTCATGA+AGG 0.505894 7.3:-42852684 MS.gene96849:CDS
TGCAAGCTTTGGGCTACTCC+AGG 0.507384 7.3:-42853493 MS.gene96849:CDS
GCTTGCTTAATGTTAAATGC+GGG 0.515939 7.3:+42852823 None:intergenic
TCTTACCTCCTTAACTCCAA+TGG 0.516510 7.3:+42852530 None:intergenic
TTTGGAGAGAATTGTTCGTT+GGG 0.527129 7.3:-42852945 MS.gene96849:CDS
TCAGTAGCAACGTACATAGC+TGG 0.536512 7.3:+42852648 None:intergenic
TTTGGGAAGAAACCATCTGT+TGG 0.536861 7.3:-42853140 MS.gene96849:CDS
AATATCTGTCAAAGTAGACT+TGG 0.540976 7.3:+42853166 None:intergenic
CACTCATGAAGGTTATGTCA+AGG 0.543474 7.3:-42852673 MS.gene96849:CDS
TGCTTGCTTAATGTTAAATG+CGG 0.544421 7.3:+42852822 None:intergenic
AGAAGCAGGTAAGGACTTTG+TGG 0.551445 7.3:-42853946 MS.gene96849:CDS
GCAAGATCCTTTGTGCTCAA+GGG 0.553478 7.3:-42853034 MS.gene96849:CDS
ACAGTAATATTCCAGAACAT+CGG 0.561715 7.3:+42852779 None:intergenic
AAGAAACCATCTGTTGGGGT+TGG 0.563173 7.3:-42853134 MS.gene96849:CDS
CAAGATCCTTTGTGCTCAAG+GGG 0.564756 7.3:-42853033 MS.gene96849:CDS
GTAGAGAAGGAATCTGACAT+AGG 0.571490 7.3:-42853873 MS.gene96849:CDS
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.3:-42853886 MS.gene96849:CDS
AAAACATGTGAAGTACTTGG+TGG 0.581761 7.3:+42853689 None:intergenic
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.3:+42853897 None:intergenic
ACATTTCCTTCACCAAACTT+GGG 0.583492 7.3:+42853454 None:intergenic
TAGAGAAGGAATCTGACATA+GGG 0.587709 7.3:-42853872 MS.gene96849:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.3:+42853887 None:intergenic
AACCTGCCAACCCCAACAGA+TGG 0.601175 7.3:+42853128 None:intergenic
GACATAGGGCAAGTTACAGT+CGG 0.601467 7.3:-42853858 MS.gene96849:CDS
TATAGCTGAAATTGGAGACA+AGG 0.601584 7.3:+42852608 None:intergenic
GTTAAATGCGGGGAAATGCA+AGG 0.603048 7.3:+42852834 None:intergenic
TGGGAAGAAACCATCTGTTG+GGG 0.604158 7.3:-42853138 MS.gene96849:CDS
GATACATCTAAGTGTCGCTG+TGG 0.606516 7.3:-42853630 MS.gene96849:CDS
CTTGTTCCCCTTGAGCACAA+AGG 0.606845 7.3:+42853027 None:intergenic
TGATGGTTGTTTCTCTACTG+AGG 0.607499 7.3:-42853796 MS.gene96849:CDS
GGCCAGACCATTTGTGAGTG+CGG 0.613514 7.3:+42852360 None:intergenic
ATACGAGTAATTCGTCCCAA+AGG 0.621753 7.3:+42852969 None:intergenic
CTTGCTTAATGTTAAATGCG+GGG 0.623908 7.3:+42852824 None:intergenic
AAACTCACTCTATAAAAGTG+TGG 0.625241 7.3:-42853829 MS.gene96849:CDS
ACTCATGAAGGTTATGTCAA+GGG 0.625259 7.3:-42852672 MS.gene96849:CDS
CACCATTAACAAATCCTCGA+CGG 0.626619 7.3:+42853571 None:intergenic
TGTCACCATTGGAGTTAAGG+AGG 0.627855 7.3:-42852535 MS.gene96849:intron
TTTAACTTCAGTTAACAGGT+GGG 0.629710 7.3:+42852339 None:intergenic
CTAGTTATAAGAAAATCTGA+TGG 0.635745 7.3:-42853056 MS.gene96849:CDS
AAAGCTGATGAAGATAATTG+CGG 0.643142 7.3:-42852723 MS.gene96849:CDS
TACTACTTCTACTCAAGCAG+AGG 0.643833 7.3:-42854027 MS.gene96849:CDS
ATACATCTAAGTGTCGCTGT+GGG 0.646105 7.3:-42853629 MS.gene96849:CDS
AGTGTGGCAGATCTTGATGA+TGG 0.654797 7.3:-42853813 MS.gene96849:CDS
ATAGCTGAAATTGGAGACAA+GGG 0.660206 7.3:+42852609 None:intergenic
TTGCCTAAACAATTCCGTCG+AGG 0.663253 7.3:-42853585 MS.gene96849:CDS
AAACATGTGAAGTACTTGGT+GGG 0.707560 7.3:+42853690 None:intergenic
GCTGCAACCAATCAACTCAG+CGG 0.749919 7.3:-42853757 MS.gene96849:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGTTAATGAATTTATTAAA+AGG - chr7.3:42853663-42853682 MS.gene96849:CDS 10.0%
!! AGTTAATGAATTTATTAAAA+GGG - chr7.3:42853664-42853683 MS.gene96849:CDS 10.0%
!! GTTAATGAATTTATTAAAAG+GGG - chr7.3:42853665-42853684 MS.gene96849:CDS 15.0%
!! ACAAACAAAAGCAAAAATTT+AGG + chr7.3:42852980-42852999 None:intergenic 20.0%
!! CAAACAAAAGCAAAAATTTA+GGG + chr7.3:42852979-42852998 None:intergenic 20.0%
!! TTTCTATTACGAATTGATAT+AGG - chr7.3:42853143-42853162 MS.gene96849:CDS 20.0%
!! TTTGAATGCATTTATTTACT+TGG - chr7.3:42853893-42853912 MS.gene96849:CDS 20.0%
!!! ACTTTGACAGATATTTTTTT+TGG - chr7.3:42853204-42853223 MS.gene96849:intron 20.0%
!!! CTTTGACAGATATTTTTTTT+GGG - chr7.3:42853205-42853224 MS.gene96849:intron 20.0%
!!! TATTACTGTTTTAGTGATAA+TGG - chr7.3:42853597-42853616 MS.gene96849:CDS 20.0%
! CTAGTTATAAGAAAATCTGA+TGG - chr7.3:42853306-42853325 MS.gene96849:intron 25.0%
! TCATGTAATGTTGAAATTAG+TGG - chr7.3:42853261-42853280 MS.gene96849:intron 25.0%
! TGGATACTAGAATTTAACTA+TGG - chr7.3:42853913-42853932 MS.gene96849:CDS 25.0%
!! AAACTTCTTTTGAACGAAAA+AGG - chr7.3:42852375-42852394 MS.gene96849:CDS 25.0%
!! ATATTTAAAGTTAAGAGAGG+TGG + chr7.3:42853085-42853104 None:intergenic 25.0%
!! GCAATATTTAAAGTTAAGAG+AGG + chr7.3:42853088-42853107 None:intergenic 25.0%
!! TTACCTTTCTTATTGTTTTC+AGG - chr7.3:42853943-42853962 MS.gene96849:CDS 25.0%
!!! CTTTTTTAACTTCAGTTAAC+AGG + chr7.3:42854030-42854049 None:intergenic 25.0%
AAACTCACTCTATAAAAGTG+TGG - chr7.3:42852533-42852552 MS.gene96849:intron 30.0%
AAAGCTGATGAAGATAATTG+CGG - chr7.3:42853639-42853658 MS.gene96849:CDS 30.0%
AATATCTGTCAAAGTAGACT+TGG + chr7.3:42853199-42853218 None:intergenic 30.0%
ACAGTAATATTCCAGAACAT+CGG + chr7.3:42853586-42853605 None:intergenic 30.0%
AGCTTTCTTACTATTCCTTT+GGG - chr7.3:42853378-42853397 MS.gene96849:intron 30.0%
AGTAAACCTATAGCTGAAAT+TGG + chr7.3:42853765-42853784 None:intergenic 30.0%
TCTCAATGTCACTAAAGAAA+AGG - chr7.3:42852932-42852951 MS.gene96849:CDS 30.0%
TGCTTGCTTAATGTTAAATG+CGG + chr7.3:42853543-42853562 None:intergenic 30.0%
TGGAATTAAAAACCCAAGTT+TGG - chr7.3:42852896-42852915 MS.gene96849:CDS 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.3:42852373-42852392 None:intergenic 30.0%
TTGTTTAGGCAAAACTTGAT+AGG + chr7.3:42852769-42852788 None:intergenic 30.0%
! GTAAAAACATGTGAAGTACT+TGG + chr7.3:42852679-42852698 None:intergenic 30.0%
! TCTTGATGATTTGAAGGAAA+AGG - chr7.3:42853803-42853822 MS.gene96849:CDS 30.0%
! TTTAACTTCAGTTAACAGGT+GGG + chr7.3:42854026-42854045 None:intergenic 30.0%
! TTTTCCTTCAAATCATCAAG+AGG + chr7.3:42853804-42853823 None:intergenic 30.0%
!! ACAATGTCAGAGTTATTTTG+TGG - chr7.3:42853011-42853030 MS.gene96849:CDS 30.0%
!! CAATGTCAGAGTTATTTTGT+GGG - chr7.3:42853012-42853031 MS.gene96849:CDS 30.0%
!! GGTTTTTAATTCCAAATTCC+TGG + chr7.3:42852890-42852909 None:intergenic 30.0%
!!! TTTTAACTTCAGTTAACAGG+TGG + chr7.3:42854027-42854046 None:intergenic 30.0%
AACATTTCCTTCACCAAACT+TGG + chr7.3:42852912-42852931 None:intergenic 35.0%
ACATTTCCTTCACCAAACTT+GGG + chr7.3:42852911-42852930 None:intergenic 35.0%
ACTCATGAAGGTTATGTCAA+GGG - chr7.3:42853690-42853709 MS.gene96849:CDS 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7.3:42852450-42852469 MS.gene96849:intron 35.0%
ATAGCTGAAATTGGAGACAA+GGG + chr7.3:42853756-42853775 None:intergenic 35.0%
CAGTAATATTCCAGAACATC+GGG + chr7.3:42853585-42853604 None:intergenic 35.0%
CTTGCATTGTCAATACAACT+TGG + chr7.3:42852855-42852874 None:intergenic 35.0%
CTTGCTTAATGTTAAATGCG+GGG + chr7.3:42853541-42853560 None:intergenic 35.0%
GAGCCTGAAAACAATAAGAA+AGG + chr7.3:42853949-42853968 None:intergenic 35.0%
GAGCTTTCTTACTATTCCTT+TGG - chr7.3:42853377-42853396 MS.gene96849:intron 35.0%
GCAATTATCTTCATCAGCTT+TGG + chr7.3:42853640-42853659 None:intergenic 35.0%
GCTTGCTTAATGTTAAATGC+GGG + chr7.3:42853542-42853561 None:intergenic 35.0%
TAGAGAAGGAATCTGACATA+GGG - chr7.3:42852490-42852509 MS.gene96849:intron 35.0%
TATAGCTGAAATTGGAGACA+AGG + chr7.3:42853757-42853776 None:intergenic 35.0%
TATCGAAAGCAGCTAAGAAT+AGG - chr7.3:42853496-42853515 MS.gene96849:CDS 35.0%
TTGTCTCCAATTTCAGCTAT+AGG - chr7.3:42853756-42853775 MS.gene96849:CDS 35.0%
TTTGGAGAGAATTGTTCGTT+GGG - chr7.3:42853417-42853436 MS.gene96849:intron 35.0%
! AAAACATGTGAAGTACTTGG+TGG + chr7.3:42852676-42852695 None:intergenic 35.0%
! AAACATGTGAAGTACTTGGT+GGG + chr7.3:42852675-42852694 None:intergenic 35.0%
! AACACCTCTTGATGATTTGA+AGG - chr7.3:42853797-42853816 MS.gene96849:CDS 35.0%
! GGACGAATTACTCGTATTTT+TGG - chr7.3:42853399-42853418 MS.gene96849:intron 35.0%
! GTATTGACAATGCAAGCTTT+GGG - chr7.3:42852859-42852878 MS.gene96849:CDS 35.0%
! TAAAAACCCAAGTTTGGTGA+AGG - chr7.3:42852902-42852921 MS.gene96849:CDS 35.0%
! TGTATTGACAATGCAAGCTT+TGG - chr7.3:42852858-42852877 MS.gene96849:CDS 35.0%
!! TTTTGGAGAGAATTGTTCGT+TGG - chr7.3:42853416-42853435 MS.gene96849:intron 35.0%
!!! CATCAAGAGGTGTTTTGAAA+CGG + chr7.3:42853791-42853810 None:intergenic 35.0%
AAGGAAAAGGTTGTCACCAT+TGG - chr7.3:42853816-42853835 MS.gene96849:CDS 40.0%
AATCCTCGACGGAATTGTTT+AGG + chr7.3:42852783-42852802 None:intergenic 40.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.3:42852468-42852487 None:intergenic 40.0%
ATACGAGTAATTCGTCCCAA+AGG + chr7.3:42853396-42853415 None:intergenic 40.0%
CACCATTAACAAATCCTCGA+CGG + chr7.3:42852794-42852813 None:intergenic 40.0%
CACTCATGAAGGTTATGTCA+AGG - chr7.3:42853689-42853708 MS.gene96849:CDS 40.0%
GTACGTTGCTACTGATGATT+TGG - chr7.3:42853722-42853741 MS.gene96849:CDS 40.0%
GTAGAGAAGGAATCTGACAT+AGG - chr7.3:42852489-42852508 MS.gene96849:intron 40.0%
TACTACTTCTACTCAAGCAG+AGG - chr7.3:42852335-42852354 MS.gene96849:CDS 40.0%
TCTTACCTCCTTAACTCCAA+TGG + chr7.3:42853835-42853854 None:intergenic 40.0%
TTAAAAGGGGTCACTCATGA+AGG - chr7.3:42853678-42853697 MS.gene96849:CDS 40.0%
TTGGGAAGAAACCATCTGTT+GGG - chr7.3:42853223-42853242 MS.gene96849:intron 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.3:42852467-42852486 MS.gene96849:intron 40.0%
TTTGGGAAGAAACCATCTGT+TGG - chr7.3:42853222-42853241 MS.gene96849:intron 40.0%
! ATACATCTAAGTGTCGCTGT+GGG - chr7.3:42852733-42852752 MS.gene96849:CDS 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.3:42852402-42852421 MS.gene96849:intron 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG + chr7.3:42852615-42852634 None:intergenic 40.0%
!! TGATGGTTGTTTCTCTACTG+AGG - chr7.3:42852566-42852585 MS.gene96849:CDS 40.0%
!! TGTCAGAGTTATTTTGTGGG+TGG - chr7.3:42853015-42853034 MS.gene96849:CDS 40.0%
!! TTCCGTCGAGGATTTGTTAA+TGG - chr7.3:42852789-42852808 MS.gene96849:CDS 40.0%
AAGAAACCATCTGTTGGGGT+TGG - chr7.3:42853228-42853247 MS.gene96849:intron 45.0%
AATTCTTGAGCCCGATGTTC+TGG - chr7.3:42853572-42853591 MS.gene96849:CDS 45.0%
AGAACATCGGGCTCAAGAAT+TGG + chr7.3:42853573-42853592 None:intergenic 45.0%
AGAAGCAGGTAAGGACTTTG+TGG - chr7.3:42852416-42852435 MS.gene96849:intron 45.0%
AGAGGTGGTTGTAGAGAAGT+GGG + chr7.3:42853070-42853089 None:intergenic 45.0%
AGTGTGGCAGATCTTGATGA+TGG - chr7.3:42852549-42852568 MS.gene96849:CDS 45.0%
CAAGATCCTTTGTGCTCAAG+GGG - chr7.3:42853329-42853348 MS.gene96849:intron 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.3:42852476-42852495 MS.gene96849:intron 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.3:42852478-42852497 None:intergenic 45.0%
CTTGTTTGCAGAAGCAGGTA+AGG - chr7.3:42852407-42852426 MS.gene96849:intron 45.0%
GACATAGGGCAAGTTACAGT+CGG - chr7.3:42852504-42852523 MS.gene96849:intron 45.0%
GCAAGATCCTTTGTGCTCAA+GGG - chr7.3:42853328-42853347 MS.gene96849:intron 45.0%
GGTTGTCACCATTGGAGTTA+AGG - chr7.3:42853824-42853843 MS.gene96849:CDS 45.0%
GTTAAATGCGGGGAAATGCA+AGG + chr7.3:42853531-42853550 None:intergenic 45.0%
TCAACATCCGCACTCACAAA+TGG - chr7.3:42853995-42854014 MS.gene96849:CDS 45.0%
TCAGTAGCAACGTACATAGC+TGG + chr7.3:42853717-42853736 None:intergenic 45.0%
TGGGAAGAAACCATCTGTTG+GGG - chr7.3:42853224-42853243 MS.gene96849:intron 45.0%
TGTCACCATTGGAGTTAAGG+AGG - chr7.3:42853827-42853846 MS.gene96849:CDS 45.0%
TTGCCTAAACAATTCCGTCG+AGG - chr7.3:42852777-42852796 MS.gene96849:CDS 45.0%
TTTGGGCTACTCCAGGAATT+TGG - chr7.3:42852876-42852895 MS.gene96849:CDS 45.0%
! GATACATCTAAGTGTCGCTG+TGG - chr7.3:42852732-42852751 MS.gene96849:CDS 45.0%
!! AGAGAAGTGGGCTACTTAGA+AGG + chr7.3:42853058-42853077 None:intergenic 45.0%
ATCCGCACTCACAAATGGTC+TGG - chr7.3:42854000-42854019 MS.gene96849:CDS 50.0%
CTTGTTCCCCTTGAGCACAA+AGG + chr7.3:42853338-42853357 None:intergenic 50.0%
GAGAGGTGGTTGTAGAGAAG+TGG + chr7.3:42853071-42853090 None:intergenic 50.0%
GCTGCAACCAATCAACTCAG+CGG - chr7.3:42852605-42852624 MS.gene96849:CDS 50.0%
GGCAAGATCCTTTGTGCTCA+AGG - chr7.3:42853327-42853346 MS.gene96849:intron 50.0%
! GTGGGCTACTTAGAAGGTCA+GGG + chr7.3:42853052-42853071 None:intergenic 50.0%
!! AGTGGGCTACTTAGAAGGTC+AGG + chr7.3:42853053-42853072 None:intergenic 50.0%
AACCTGCCAACCCCAACAGA+TGG + chr7.3:42853237-42853256 None:intergenic 55.0%
GGCCAGACCATTTGTGAGTG+CGG + chr7.3:42854005-42854024 None:intergenic 55.0%
! AACCATCTGTTGGGGTTGGC+AGG - chr7.3:42853232-42853251 MS.gene96849:intron 55.0%
!! TGCAAGCTTTGGGCTACTCC+AGG - chr7.3:42852869-42852888 MS.gene96849:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 42852327 42854057 42852327 ID=MS.gene96849
chr7.3 mRNA 42852327 42854057 42852327 ID=MS.gene96849.t1;Parent=MS.gene96849
chr7.3 exon 42853431 42854057 42853431 ID=MS.gene96849.t1.exon1;Parent=MS.gene96849.t1
chr7.3 CDS 42853431 42854057 42853431 ID=cds.MS.gene96849.t1;Parent=MS.gene96849.t1
chr7.3 exon 42852536 42853219 42852536 ID=MS.gene96849.t1.exon2;Parent=MS.gene96849.t1
chr7.3 CDS 42852536 42853219 42852536 ID=cds.MS.gene96849.t1;Parent=MS.gene96849.t1
chr7.3 exon 42852327 42852419 42852327 ID=MS.gene96849.t1.exon3;Parent=MS.gene96849.t1
chr7.3 CDS 42852327 42852419 42852327 ID=cds.MS.gene96849.t1;Parent=MS.gene96849.t1
Gene Sequence

>MS.gene96849

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAAAGGTAACAAAGTCTTGTTTGCAGAAGCAGGTAAGGACTTTGTGGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTGACATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAAAAGTGTGGCAGATCTTGATGATGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATTGCAACACTCTTAAACTCAACATTGACGACACTCAACCCACCAAGTACTTCACATGTTTTTACTACGCTCATGATTTGATAAAATCAACAATTAAAGATACATCTAAGTGTCGCTGTGGGAATTCTTTGTCCTATCAAGTTTTGCCTAAACAATTCCGTCGAGGATTTGTTAATGGTGTTGCTACTTTTGTGATAACTGATGATCTGAATGTCATTCCAAGTTGTATTGACAATGCAAGCTTTGGGCTACTCCAGGAATTTGGAATTAAAAACCCAAGTTTGGTGAAGGAAATGTTTCTCAATGTCACTAAAGAAAAGGTTTTGTATTTGAATTTCTATTCCCTAAATTTTTGCTTTTGTTTGTTTTTTGAATGAACAATGTCAGAGTTATTTTGTGGGTGGAGATATATAATCCCTGACCTTCTAAGTAGCCCACTTCTCTACAACCACCTCTCTTAACTTTAAATATTGCTATTTTTTTTTTTTTATCAATTATGTTTGCTAATTTTTCTATTACGAATTGATATAGGTACTTGATTTACTAAAATGCTCTTTGCTCTCCAAGTCTACTTTGACAGATATTTTTTTTGGGAAGAAACCATCTGTTGGGGTTGGCAGGTTTTTCTCATGTAATGTTGAAATTAGTGGCAATATGCAAATCATTTTAAAACTAGTTATAAGAAAATCTGATGGCAAGATCCTTTGTGCTCAAGGGGAACAAGATTTTGCAGACTTACTTTTGAGCTTTCTTACTATTCCTTTGGGACGAATTACTCGTATTTTTGGAGAGAATTGTTCGTTGGGCAGCATTAATCGATTCATCAAGAGTGTAGCTGATTTAAATGAAAAGAAATATTTCATATCGAAAGCAGCTAAGAATAGGATTGTTGATCCTTGCATTTCCCCGCATTTAACATTAAGCAAGCAAATATTACCAATTCTTGAGCCCGATGTTCTGGAATATTACTGTTTTAGTGATAATGGTATTTGTTTACATTATTCCAAAGCTGATGAAGATAATTGCGGAAAGTTAATGAATTTATTAAAAGGGGTCACTCATGAAGGTTATGTCAAGGGTCCAGCTATGTACGTTGCTACTGATGATTTGGTCATTGCACCCTTGTCTCCAATTTCAGCTATAGGTTTACTTAACCGTTTCAAAACACCTCTTGATGATTTGAAGGAAAAGGTTGTCACCATTGGAGTTAAGGAGGTAAGAAATTGTAAAAATTGCTAGTGTAGATTTTTATGCTCATTTTTGAATGCATTTATTTACTTGGATACTAGAATTTAACTATGGCTTATATTTACCTTTCTTATTGTTTTCAGGCTCTCAGTATATTGAATGCTGCTTTAACTTCAACATCCGCACTCACAAATGGTCTGGCCCACCTGTTAACTGAAGTTAAAAAAGAGAAGTGA
Protein sequence

>MS.gene96849.t1

MAATTSTQAEEQHVSLKLLLNEKGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESDIGQVTVGCLNSLYKSVADLDDGCFSTEAIKQMLLQPINSAEDYCNTLKLNIDDTQPTKYFTCFYYAHDLIKSTIKDTSKCRCGNSLSYQVLPKQFRRGFVNGVATFVITDDLNVIPSCIDNASFGLLQEFGIKNPSLVKEMFLNVTKEKVLDLLKCSLLSKSTLTDIFFGKKPSVGVGRFFSCNVEISGNMQIILKLVIRKSDGKILCAQGEQDFADLLLSFLTIPLGRITRIFGENCSLGSINRFIKSVADLNEKKYFISKAAKNRIVDPCISPHLTLSKQILPILEPDVLEYYCFSDNGICLHYSKADEDNCGKLMNLLKGVTHEGYVKGPAMYVATDDLVIAPLSPISAIGLLNRFKTPLDDLKEKVVTIGVKEALSILNAALTSTSALTNGLAHLLTEVKKEK