AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94735

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94735.t1 MTR_7g066570 83.198 494 37 4 1 457 1 485 0.0 804
MS.gene94735.t1 MTR_7g012680 65.323 496 91 5 1 459 1 452 0.0 599
MS.gene94735.t1 MTR_7g058710 52.362 508 169 9 1 459 1 484 2.33e-168 483
MS.gene94735.t1 MTR_7g066260 55.444 496 144 7 6 458 7 468 1.15e-167 481
MS.gene94735.t1 MTR_7g066340 54.158 493 151 7 5 458 3 459 9.28e-160 460
MS.gene94735.t1 MTR_7g066340 29.148 223 122 9 10 212 259 465 8.70e-12 67.4
MS.gene94735.t1 MTR_7g066350 56.148 488 133 10 10 453 5 455 1.24e-157 454
MS.gene94735.t1 MTR_7g066350 28.992 238 140 9 225 446 3 227 1.44e-13 72.8
MS.gene94735.t1 MTR_7g066580 55.240 458 175 8 20 458 1 447 1.68e-155 449
MS.gene94735.t1 MTR_1g041315 51.646 486 150 7 1 436 1 451 4.75e-151 439
MS.gene94735.t1 MTR_2g029400 54.139 447 158 9 1 442 1 405 4.20e-142 413
MS.gene94735.t1 MTR_7g066290 50.916 491 141 7 2 452 3 433 7.87e-138 403
MS.gene94735.t1 MTR_7g066400 49.574 470 164 9 10 449 8 434 1.70e-137 402
MS.gene94735.t1 MTR_7g066360 49.598 498 168 9 1 458 1 455 1.41e-131 389
MS.gene94735.t1 MTR_7g066310 51.852 459 137 10 11 458 4 389 3.30e-131 385
MS.gene94735.t1 MTR_7g066310 29.577 213 132 5 10 213 189 392 1.20e-11 66.6
MS.gene94735.t1 MTR_7g066430 43.699 492 223 7 15 458 5 490 8.35e-126 375
MS.gene94735.t1 MTR_7g058700 44.172 489 127 8 26 459 531 928 6.34e-116 362
MS.gene94735.t1 MTR_7g066410 39.370 508 234 7 14 452 10 512 6.53e-112 340
MS.gene94735.t1 MTR_7g063920 40.169 473 233 9 1 459 1 437 1.15e-101 311
MS.gene94735.t1 MTR_7g062280 37.843 510 240 10 6 459 4 492 2.45e-99 306
MS.gene94735.t1 MTR_7g062300 38.934 488 231 12 6 448 4 469 1.48e-98 304
MS.gene94735.t1 MTR_7g063900 41.650 497 220 13 15 459 11 489 2.03e-98 304
MS.gene94735.t1 MTR_7g063840 37.931 493 243 10 7 459 5 474 2.31e-97 301
MS.gene94735.t1 MTR_7g063880 40.281 499 222 16 1 456 1 466 3.91e-97 300
MS.gene94735.t1 MTR_7g063820 39.718 496 241 9 8 459 4 485 4.20e-97 300
MS.gene94735.t1 MTR_7g063660 37.166 487 250 11 13 459 8 478 4.62e-95 295
MS.gene94735.t1 MTR_7g063890 39.960 503 237 11 5 458 18 504 5.98e-93 290
MS.gene94735.t1 MTR_7g066680 52.117 307 104 4 178 449 37 335 2.09e-89 276
MS.gene94735.t1 MTR_3g007740 38.115 488 220 12 1 452 1 442 3.88e-86 271
MS.gene94735.t1 MTR_7g063670 36.166 506 225 12 1 459 4 458 1.06e-82 262
MS.gene94735.t1 MTR_4g019310 35.400 500 231 16 17 448 11 486 3.38e-81 260
MS.gene94735.t1 MTR_7g063830 36.458 480 225 9 8 452 4 438 4.07e-81 258
MS.gene94735.t1 MTR_7g066490 38.622 479 169 13 15 454 17 409 6.44e-80 254
MS.gene94735.t1 MTR_3g065200 36.207 464 198 11 15 439 4 408 7.06e-80 255
MS.gene94735.t1 MTR_7g066280 40.573 419 173 8 93 458 1 396 3.28e-79 252
MS.gene94735.t1 MTR_4g017830 34.216 529 255 14 1 458 1 507 1.87e-75 246
MS.gene94735.t1 MTR_4g017610 35.234 491 254 14 5 449 4 476 6.26e-75 243
MS.gene94735.t1 MTR_4g019340 35.611 483 234 11 15 440 39 501 1.14e-73 240
MS.gene94735.t1 MTR_4g017470 34.774 486 279 11 1 458 1 476 1.04e-72 238
MS.gene94735.t1 MTR_4g017440 34.690 516 271 14 1 458 1 508 1.17e-72 238
MS.gene94735.t1 MTR_7g066480 42.947 319 149 4 13 298 15 333 5.08e-72 234
MS.gene94735.t1 MTR_7g066480 53.659 82 38 0 373 454 342 423 5.33e-18 86.3
MS.gene94735.t1 MTR_1g014060 50.633 237 78 3 23 222 9 243 7.08e-67 219
MS.gene94735.t1 MTR_1g014060 56.667 210 70 3 250 459 203 391 1.77e-64 213
MS.gene94735.t1 MTR_4g017410 32.438 521 249 15 8 458 3 490 1.80e-64 216
MS.gene94735.t1 MTR_4g017550 31.435 474 241 16 41 450 18 471 2.77e-49 175
MS.gene94735.t1 MTR_4g017550 38.614 101 49 3 17 117 250 337 4.67e-11 65.1
MS.gene94735.t1 MTR_7g063720 39.056 233 119 4 228 459 23 233 9.78e-44 154
MS.gene94735.t1 MTR_7g063720 26.027 219 130 6 17 211 26 236 1.16e-14 73.9
MS.gene94735.t1 MTR_7g062270 43.407 182 64 3 1 147 1 178 1.16e-36 139
MS.gene94735.t1 MTR_2g067310 52.817 142 53 3 25 161 58 190 6.47e-35 130
MS.gene94735.t1 MTR_8g023240 26.316 475 274 15 15 444 38 481 2.34e-32 130
MS.gene94735.t1 MTR_7g063850 30.671 313 184 8 151 458 4 288 3.55e-32 124
MS.gene94735.t1 MTR_7g063690 34.363 259 129 10 1 255 1 222 2.84e-28 112
MS.gene94735.t1 MTR_7g066390 49.153 118 50 2 350 458 12 128 2.18e-25 102
MS.gene94735.t1 MTR_7g100420 32.979 282 164 8 178 452 134 397 2.16e-24 105
MS.gene94735.t1 MTR_7g100420 64.407 59 17 1 15 69 40 98 3.44e-14 74.3
MS.gene94735.t1 MTR_8g445860 31.140 228 138 7 228 445 13 231 2.08e-21 93.2
MS.gene94735.t1 MTR_8g445860 29.694 229 113 6 15 200 14 237 1.27e-19 88.2
MS.gene94735.t1 MTR_1g115440 29.832 238 143 8 223 446 6 233 2.35e-19 87.4
MS.gene94735.t1 MTR_1g115440 29.060 234 115 4 13 200 10 238 1.70e-18 85.1
MS.gene94735.t1 MTR_0150s0010 28.033 239 121 5 8 200 4 237 2.02e-18 84.7
MS.gene94735.t1 MTR_4g019240 41.739 115 57 4 10 116 9 121 7.43e-18 81.6
MS.gene94735.t1 MTR_7g063760 48.649 74 37 1 387 459 1 74 4.39e-16 73.2
MS.gene94735.t1 MTR_1g115455 27.632 228 118 4 15 200 10 232 1.56e-15 76.3
MS.gene94735.t1 MTR_7g063870 32.022 178 69 6 3 179 25 151 1.11e-14 74.3
MS.gene94735.t1 MTR_1g115450 39.286 84 46 1 15 98 8 86 1.75e-14 70.9
MS.gene94735.t1 MTR_1g115435 26.540 211 125 7 17 205 10 212 4.64e-13 68.9
MS.gene94735.t1 MTR_1g115470 39.362 94 50 2 17 108 9 97 1.31e-12 69.7
MS.gene94735.t1 MTR_8g445920 35.955 89 52 1 8 96 4 87 2.94e-11 60.8
MS.gene94735.t1 MTR_8g044890 35.955 89 52 1 8 96 4 87 2.94e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94735.t1 AT5G01120 31.493 489 267 9 15 448 10 485 5.50e-65 218
MS.gene94735.t1 AT5G43240 30.178 507 254 10 15 448 10 489 2.45e-59 203
MS.gene94735.t1 AT5G43240 30.178 507 254 10 15 448 10 489 2.45e-59 203
MS.gene94735.t1 AT5G43240 30.178 507 254 10 15 448 10 489 2.45e-59 203
MS.gene94735.t1 AT3G09140 31.124 498 265 10 17 452 12 493 3.72e-56 194
MS.gene94735.t1 AT3G09110 33.974 312 164 5 17 290 12 319 2.68e-52 180
MS.gene94735.t1 AT5G01130 31.130 469 258 9 15 452 10 444 1.32e-51 181
MS.gene94735.t1 AT5G01150 31.612 484 267 11 17 452 12 479 1.58e-51 182
MS.gene94735.t1 AT5G01150 25.000 240 156 8 220 446 1 229 5.60e-13 71.2
MS.gene94735.t1 AT3G09140 30.038 526 262 13 17 452 12 521 2.50e-50 179
MS.gene94735.t1 AT5G01140 29.350 477 259 9 17 452 12 451 2.07e-49 175
MS.gene94735.t1 AT5G01140 27.273 220 120 7 15 200 241 454 1.43e-12 69.7
MS.gene94735.t1 AT3G09120 31.629 313 167 4 13 282 5 313 3.18e-41 149
MS.gene94735.t1 AT3G09120 28.509 228 152 7 227 446 5 229 2.30e-14 74.3
MS.gene94735.t1 AT5G37320 26.220 492 269 12 24 452 19 479 4.28e-39 147
MS.gene94735.t1 AT5G43240 28.363 342 199 8 130 448 27 345 7.76e-28 114

Find 75 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTAACAGTTCTTATAAAT+TGG 0.177775 7.1:-35380498 None:intergenic
GCTTCTTAACATTGCCTTTA+GGG 0.201640 7.1:+35378920 MS.gene94735:CDS
TTGGGATCAACCACTTTAAA+TGG 0.256099 7.1:-35380175 None:intergenic
GAGGAAAGAGTCATCAAAAT+TGG 0.285360 7.1:+35380334 MS.gene94735:CDS
AGTACTTTGTTTGCGAGAAT+TGG 0.296523 7.1:+35379148 MS.gene94735:CDS
AGCTTCTTAACATTGCCTTT+AGG 0.310196 7.1:+35378919 MS.gene94735:CDS
TAATCTTCCATGGAGTTTCT+TGG 0.323499 7.1:-35379081 None:intergenic
TAAAGTCCCTCTATATGATT+TGG 0.323592 7.1:+35380312 MS.gene94735:CDS
CAAAGGACCATCAATGTATA+TGG 0.337667 7.1:+35380225 MS.gene94735:CDS
AATATTGAAGCAGTGAGATT+TGG 0.357605 7.1:+35378973 MS.gene94735:CDS
CAGCACCAATTGGTAATATC+TGG 0.361156 7.1:-35380030 None:intergenic
TAATGTTCGCTTGAGAGTTT+TGG 0.375097 7.1:+35378831 MS.gene94735:CDS
TTTGTCACCATATACATTGA+TGG 0.378069 7.1:-35380232 None:intergenic
CATATACATTGATGGTCCTT+TGG 0.380788 7.1:-35380224 None:intergenic
TAGAAATGACATAGTAGAAA+TGG 0.386822 7.1:-35380281 None:intergenic
CCAATTTATAAGAACTGTTA+AGG 0.387624 7.1:+35380498 MS.gene94735:CDS
CAAATTCTGTTTGTTGAAGC+AGG 0.394016 7.1:+35379800 MS.gene94735:CDS
TCAACTTCTGCTTTGACAAA+TGG 0.395017 7.1:+35380469 MS.gene94735:CDS
CATTCAAATTATGAACAGAT+TGG 0.404612 7.1:-35379682 None:intergenic
AGTCTTATAACTTTCCCCTT+AGG 0.413727 7.1:+35379848 MS.gene94735:CDS
TTAGATATACTTCTAAAGCT+TGG 0.418827 7.1:+35379360 MS.gene94735:CDS
GTAAAATAAAATTCGTCAAA+GGG 0.419893 7.1:-35379652 None:intergenic
TACCAACCTTACAAAAGAAA+TGG 0.428657 7.1:+35380111 MS.gene94735:CDS
GTACTTTGTTTGCGAGAATT+GGG 0.432639 7.1:+35379149 MS.gene94735:CDS
TTCAACTGATTCAGTCTGAA+TGG 0.438692 7.1:-35378800 None:intergenic
CTTTCCTCCAAATCATATAG+AGG 0.468709 7.1:-35380319 None:intergenic
GGTAAGAAAGCAGCACCAAT+TGG 0.469062 7.1:-35380040 None:intergenic
AGCAATATTGAGTTTCCGAT+TGG 0.474416 7.1:+35379710 MS.gene94735:CDS
CATATGCAACACTCCTCCTA+AGG 0.479612 7.1:-35379864 None:intergenic
CTTATAACTTTCCCCTTAGG+AGG 0.479998 7.1:+35379851 MS.gene94735:CDS
AAAGCATGTACCATTTAAAG+TGG 0.491975 7.1:+35380165 MS.gene94735:CDS
GGAGTGTTGCATATGCTTCA+AGG 0.493604 7.1:+35379872 MS.gene94735:CDS
CGAGACTATTGATGCTATTG+AGG 0.494678 7.1:+35379386 MS.gene94735:CDS
GGTTCTTGAGTTCAAACTGT+GGG 0.503580 7.1:-35380009 None:intergenic
TGTAAAATAAAATTCGTCAA+AGG 0.508648 7.1:-35379653 None:intergenic
AAAGTTGTGTATGCTGAGGC+TGG 0.508934 7.1:+35378871 MS.gene94735:CDS
TCTGACATTAAATATATGTC+CGG 0.515911 7.1:-35379950 None:intergenic
CTATATTCAGTTTCAGCTGT+CGG 0.517216 7.1:-35379107 None:intergenic
AGTCCCTCTATATGATTTGG+AGG 0.525924 7.1:+35380315 MS.gene94735:CDS
AAGAACCAGATATTACCAAT+TGG 0.527915 7.1:+35380025 MS.gene94735:CDS
GACATATATTTAATGTCAGA+GGG 0.538524 7.1:+35379953 MS.gene94735:CDS
CTGTCGGCAGTAATCTTCCA+TGG 0.545539 7.1:-35379091 None:intergenic
AGTCATCAAAATTGGTGTCA+AGG 0.550538 7.1:+35380342 MS.gene94735:CDS
ATATGCAACACTCCTCCTAA+GGG 0.551461 7.1:-35379863 None:intergenic
TGTTGACATCAACAAGAAAG+AGG 0.557623 7.1:+35379416 MS.gene94735:CDS
AGTAGCATTTCCTTGCATGT+AGG 0.561055 7.1:-35379054 None:intergenic
TAAGTATGACAATAATTCAC+AGG 0.563356 7.1:-35380061 None:intergenic
TATTGCTAGACTCGTTGCTA+AGG 0.567646 7.1:+35378945 MS.gene94735:CDS
GATGGTAGCAGCTCTCCAAT+CGG 0.568044 7.1:-35379725 None:intergenic
GCAAAATCATCTTATGCCAA+AGG 0.569688 7.1:+35380208 MS.gene94735:CDS
AGTCTAGCAATAGTCCCTAA+AGG 0.571615 7.1:-35378934 None:intergenic
GGACATATATTTAATGTCAG+AGG 0.573935 7.1:+35379952 MS.gene94735:CDS
CTCGCAAACAAAGTACTGCA+AGG 0.577011 7.1:-35379142 None:intergenic
TCAAACTGTGGGGCAATGAG+AGG 0.583677 7.1:-35379998 None:intergenic
AGACATTTGTCTATCCTCAT+CGG 0.604641 7.1:-35379747 None:intergenic
ACTACAACCAAGAAACTCCA+TGG 0.604706 7.1:+35379074 MS.gene94735:CDS
ATTTATAAGAACTGTTAAGG+TGG 0.605819 7.1:+35380501 MS.gene94735:CDS
ATAGTAGAAATGGACGACAT+TGG 0.606118 7.1:-35380271 None:intergenic
TAAAATAAAATTCGTCAAAG+GGG 0.610590 7.1:-35379651 None:intergenic
TGTGTATGCTGAGGCTGGGA+AGG 0.614514 7.1:+35378876 MS.gene94735:CDS
TTTGTGCTCACCTACATGCA+AGG 0.618140 7.1:+35379044 MS.gene94735:CDS
TTTCCTCCAAATCATATAGA+GGG 0.619397 7.1:-35380318 None:intergenic
TCGCAAACAAAGTACTGCAA+GGG 0.629603 7.1:-35379141 None:intergenic
ACTATGATTACACAAGGCAG+AGG 0.642345 7.1:+35380083 MS.gene94735:CDS
AAGTTGTGTATGCTGAGGCT+GGG 0.646725 7.1:+35378872 MS.gene94735:CDS
ATTTGTCTATCCTCATCGGA+TGG 0.646872 7.1:-35379743 None:intergenic
ATTTGTCAAAGCAGAAGTTG+AGG 0.649252 7.1:-35380467 None:intergenic
TGGTTCTTGAGTTCAAACTG+TGG 0.649282 7.1:-35380010 None:intergenic
CATCAAAATTGGTGTCAAGG+AGG 0.668141 7.1:+35380345 MS.gene94735:CDS
GTTCTTGAGTTCAAACTGTG+GGG 0.673039 7.1:-35380008 None:intergenic
TATGCAACACTCCTCCTAAG+GGG 0.688986 7.1:-35379862 None:intergenic
AGAGCTGCTACCATCCGATG+AGG 0.703281 7.1:+35379733 MS.gene94735:CDS
ATACTTACTATGATTACACA+AGG 0.710311 7.1:+35380077 MS.gene94735:CDS
GAACAAAGTTGTGTATGCTG+AGG 0.744300 7.1:+35378867 MS.gene94735:CDS
ACATATATTTAATGTCAGAG+GGG 0.745195 7.1:+35379954 MS.gene94735:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCTAATTTATTATTTCTTAT+TGG + chr7.1:35379581-35379600 MS.gene94735:intron 10.0%
!! ACAAATAAAAAATGCTATTG+TGG + chr7.1:35379213-35379232 MS.gene94735:intron 20.0%
!! ATTTCTTATTGGATTTGTAT+AGG + chr7.1:35379592-35379611 MS.gene94735:intron 20.0%
!! CAAATAAAAAATGCTATTGT+GGG + chr7.1:35379214-35379233 MS.gene94735:intron 20.0%
!! GTAAAATAAAATTCGTCAAA+GGG - chr7.1:35379655-35379674 None:intergenic 20.0%
!! TAAAATAAAATTCGTCAAAG+GGG - chr7.1:35379654-35379673 None:intergenic 20.0%
!! TATTTGTAAAAATGCTCAAA+AGG - chr7.1:35379200-35379219 None:intergenic 20.0%
!! TGTAAAATAAAATTCGTCAA+AGG - chr7.1:35379656-35379675 None:intergenic 20.0%
! ACATATATTTAATGTCAGAG+GGG + chr7.1:35379954-35379973 MS.gene94735:CDS 25.0%
! ATACTTACTATGATTACACA+AGG + chr7.1:35380077-35380096 MS.gene94735:CDS 25.0%
! ATTTATAAGAACTGTTAAGG+TGG + chr7.1:35380501-35380520 MS.gene94735:CDS 25.0%
! CATTCAAATTATGAACAGAT+TGG - chr7.1:35379685-35379704 None:intergenic 25.0%
! CCAATTTATAAGAACTGTTA+AGG + chr7.1:35380498-35380517 MS.gene94735:CDS 25.0%
! CCTTAACAGTTCTTATAAAT+TGG - chr7.1:35380501-35380520 None:intergenic 25.0%
! GACATATATTTAATGTCAGA+GGG + chr7.1:35379953-35379972 MS.gene94735:CDS 25.0%
! TAAGTATGACAATAATTCAC+AGG - chr7.1:35380064-35380083 None:intergenic 25.0%
! TAGAAATGACATAGTAGAAA+TGG - chr7.1:35380284-35380303 None:intergenic 25.0%
! TCTGACATTAAATATATGTC+CGG - chr7.1:35379953-35379972 None:intergenic 25.0%
!! AATACACCATTTCTTTTGTA+AGG - chr7.1:35380120-35380139 None:intergenic 25.0%
!!! TTAGATATACTTCTAAAGCT+TGG + chr7.1:35379360-35379379 MS.gene94735:CDS 25.0%
AAAGCATGTACCATTTAAAG+TGG + chr7.1:35380165-35380184 MS.gene94735:CDS 30.0%
AAGAACCAGATATTACCAAT+TGG + chr7.1:35380025-35380044 MS.gene94735:CDS 30.0%
AATATTGAAGCAGTGAGATT+TGG + chr7.1:35378973-35378992 MS.gene94735:CDS 30.0%
ACAGGTTTAAATCCAGAAAA+TGG + chr7.1:35379264-35379283 MS.gene94735:intron 30.0%
GAATTGGGATTGTAGAAAAA+AGG + chr7.1:35379164-35379183 MS.gene94735:CDS 30.0%
GATTGTAGAAAAAAGGTAAC+AGG + chr7.1:35379171-35379190 MS.gene94735:intron 30.0%
GGACATATATTTAATGTCAG+AGG + chr7.1:35379952-35379971 MS.gene94735:CDS 30.0%
TAAAGTCCCTCTATATGATT+TGG + chr7.1:35380312-35380331 MS.gene94735:CDS 30.0%
TACCAACCTTACAAAAGAAA+TGG + chr7.1:35380111-35380130 MS.gene94735:CDS 30.0%
TTTCCTCCAAATCATATAGA+GGG - chr7.1:35380321-35380340 None:intergenic 30.0%
TTTCTGGATTTAAACCTGTA+GGG - chr7.1:35379263-35379282 None:intergenic 30.0%
TTTGTCACCATATACATTGA+TGG - chr7.1:35380235-35380254 None:intergenic 30.0%
! AAACTTGCTCCAAAAACATT+AGG - chr7.1:35379342-35379361 None:intergenic 30.0%
! GTTAACACTACACTTACTTT+TGG + chr7.1:35380403-35380422 MS.gene94735:intron 30.0%
! TCCTTTACAAAACCATTTTC+TGG - chr7.1:35379279-35379298 None:intergenic 30.0%
! TGTGTTATGCCTAATGTTTT+TGG + chr7.1:35379330-35379349 MS.gene94735:CDS 30.0%
! TTTTCTGGATTTAAACCTGT+AGG - chr7.1:35379264-35379283 None:intergenic 30.0%
!! ACTTTTGGTTACATGTTACA+GGG + chr7.1:35380418-35380437 MS.gene94735:intron 30.0%
!! TACTTTTGGTTACATGTTAC+AGG + chr7.1:35380417-35380436 MS.gene94735:intron 30.0%
!!! TCCAGAAAATGGTTTTGTAA+AGG + chr7.1:35379275-35379294 MS.gene94735:intron 30.0%
AGACATTTGTCTATCCTCAT+CGG - chr7.1:35379750-35379769 None:intergenic 35.0%
AGCAATATTGAGTTTCCGAT+TGG + chr7.1:35379710-35379729 MS.gene94735:CDS 35.0%
AGCTTCTTAACATTGCCTTT+AGG + chr7.1:35378919-35378938 MS.gene94735:CDS 35.0%
ATAGTAGAAATGGACGACAT+TGG - chr7.1:35380274-35380293 None:intergenic 35.0%
ATTTGTCAAAGCAGAAGTTG+AGG - chr7.1:35380470-35380489 None:intergenic 35.0%
CAAAGGACCATCAATGTATA+TGG + chr7.1:35380225-35380244 MS.gene94735:CDS 35.0%
CTATATTCAGTTTCAGCTGT+CGG - chr7.1:35379110-35379129 None:intergenic 35.0%
CTTTCCTCCAAATCATATAG+AGG - chr7.1:35380322-35380341 None:intergenic 35.0%
GAGGAAAGAGTCATCAAAAT+TGG + chr7.1:35380334-35380353 MS.gene94735:CDS 35.0%
GCAAAATCATCTTATGCCAA+AGG + chr7.1:35380208-35380227 MS.gene94735:CDS 35.0%
GCTTCTTAACATTGCCTTTA+GGG + chr7.1:35378920-35378939 MS.gene94735:CDS 35.0%
TAATCTTCCATGGAGTTTCT+TGG - chr7.1:35379084-35379103 None:intergenic 35.0%
TCAACTTCTGCTTTGACAAA+TGG + chr7.1:35380469-35380488 MS.gene94735:CDS 35.0%
TGTTGACATCAACAAGAAAG+AGG + chr7.1:35379416-35379435 MS.gene94735:CDS 35.0%
TTGGGATCAACCACTTTAAA+TGG - chr7.1:35380178-35380197 None:intergenic 35.0%
! AGTACTTTGTTTGCGAGAAT+TGG + chr7.1:35379148-35379167 MS.gene94735:CDS 35.0%
! AGTCTTATAACTTTCCCCTT+AGG + chr7.1:35379848-35379867 MS.gene94735:CDS 35.0%
! CAAATTCTGTTTGTTGAAGC+AGG + chr7.1:35379800-35379819 MS.gene94735:CDS 35.0%
! CACCATTTCTTTTGTAAGGT+TGG - chr7.1:35380116-35380135 None:intergenic 35.0%
! CATATACATTGATGGTCCTT+TGG - chr7.1:35380227-35380246 None:intergenic 35.0%
! GATTTTGCAATGGAAGACTT+GGG - chr7.1:35380196-35380215 None:intergenic 35.0%
! GGCATAAGATGATTTTGCAA+TGG - chr7.1:35380206-35380225 None:intergenic 35.0%
! GTACTTTGTTTGCGAGAATT+GGG + chr7.1:35379149-35379168 MS.gene94735:CDS 35.0%
! TAATGTTCGCTTGAGAGTTT+TGG + chr7.1:35378831-35378850 MS.gene94735:CDS 35.0%
! TGATTTTGCAATGGAAGACT+TGG - chr7.1:35380197-35380216 None:intergenic 35.0%
! TTCAACTGATTCAGTCTGAA+TGG - chr7.1:35378803-35378822 None:intergenic 35.0%
!! AGTCATCAAAATTGGTGTCA+AGG + chr7.1:35380342-35380361 MS.gene94735:CDS 35.0%
ACTACAACCAAGAAACTCCA+TGG + chr7.1:35379074-35379093 MS.gene94735:CDS 40.0%
ACTATGATTACACAAGGCAG+AGG + chr7.1:35380083-35380102 MS.gene94735:CDS 40.0%
AGTAGCATTTCCTTGCATGT+AGG - chr7.1:35379057-35379076 None:intergenic 40.0%
AGTCTAGCAATAGTCCCTAA+AGG - chr7.1:35378937-35378956 None:intergenic 40.0%
ATATGCAACACTCCTCCTAA+GGG - chr7.1:35379866-35379885 None:intergenic 40.0%
ATTTGTCTATCCTCATCGGA+TGG - chr7.1:35379746-35379765 None:intergenic 40.0%
CGAGACTATTGATGCTATTG+AGG + chr7.1:35379386-35379405 MS.gene94735:CDS 40.0%
CTTATAACTTTCCCCTTAGG+AGG + chr7.1:35379851-35379870 MS.gene94735:CDS 40.0%
GAACAAAGTTGTGTATGCTG+AGG + chr7.1:35378867-35378886 MS.gene94735:CDS 40.0%
GGTTCTTGAGTTCAAACTGT+GGG - chr7.1:35380012-35380031 None:intergenic 40.0%
GTTCTTGAGTTCAAACTGTG+GGG - chr7.1:35380011-35380030 None:intergenic 40.0%
TATTGCTAGACTCGTTGCTA+AGG + chr7.1:35378945-35378964 MS.gene94735:CDS 40.0%
TGGTTCTTGAGTTCAAACTG+TGG - chr7.1:35380013-35380032 None:intergenic 40.0%
! AGTCCCTCTATATGATTTGG+AGG + chr7.1:35380315-35380334 MS.gene94735:CDS 40.0%
! CAGCACCAATTGGTAATATC+TGG - chr7.1:35380033-35380052 None:intergenic 40.0%
!! CATCAAAATTGGTGTCAAGG+AGG + chr7.1:35380345-35380364 MS.gene94735:CDS 40.0%
!! GAGCTTTTCTGATTTGAGTC+CGG + chr7.1:35379931-35379950 MS.gene94735:CDS 40.0%
!! TCGCAAACAAAGTACTGCAA+GGG - chr7.1:35379144-35379163 None:intergenic 40.0%
AAAGTTGTGTATGCTGAGGC+TGG + chr7.1:35378871-35378890 MS.gene94735:CDS 45.0%
AAGTTGTGTATGCTGAGGCT+GGG + chr7.1:35378872-35378891 MS.gene94735:CDS 45.0%
CATATGCAACACTCCTCCTA+AGG - chr7.1:35379867-35379886 None:intergenic 45.0%
GGTAAGAAAGCAGCACCAAT+TGG - chr7.1:35380043-35380062 None:intergenic 45.0%
TATGCAACACTCCTCCTAAG+GGG - chr7.1:35379865-35379884 None:intergenic 45.0%
TTTGTGCTCACCTACATGCA+AGG + chr7.1:35379044-35379063 MS.gene94735:CDS 45.0%
! AACAGCGAAGTATTCCCTAC+AGG + chr7.1:35379246-35379265 MS.gene94735:intron 45.0%
!! CTCGCAAACAAAGTACTGCA+AGG - chr7.1:35379145-35379164 None:intergenic 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG + chr7.1:35379872-35379891 MS.gene94735:CDS 45.0%
!! TGTTCGCTTGAGAGTTTTGG+TGG + chr7.1:35378834-35378853 MS.gene94735:CDS 45.0%
CTGTCGGCAGTAATCTTCCA+TGG - chr7.1:35379094-35379113 None:intergenic 50.0%
GATGGTAGCAGCTCTCCAAT+CGG - chr7.1:35379728-35379747 None:intergenic 50.0%
TCAAACTGTGGGGCAATGAG+AGG - chr7.1:35380001-35380020 None:intergenic 50.0%
AGAGCTGCTACCATCCGATG+AGG + chr7.1:35379733-35379752 MS.gene94735:CDS 55.0%
TGTGTATGCTGAGGCTGGGA+AGG + chr7.1:35378876-35378895 MS.gene94735:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 35378793 35380531 35378793 ID=MS.gene94735
chr7.1 mRNA 35378793 35380531 35378793 ID=MS.gene94735.t1;Parent=MS.gene94735
chr7.1 exon 35378793 35379185 35378793 ID=MS.gene94735.t1.exon1;Parent=MS.gene94735.t1
chr7.1 CDS 35378793 35379185 35378793 ID=cds.MS.gene94735.t1;Parent=MS.gene94735.t1
chr7.1 exon 35379297 35379437 35379297 ID=MS.gene94735.t1.exon2;Parent=MS.gene94735.t1
chr7.1 CDS 35379297 35379437 35379297 ID=cds.MS.gene94735.t1;Parent=MS.gene94735.t1
chr7.1 exon 35379614 35380366 35379614 ID=MS.gene94735.t1.exon3;Parent=MS.gene94735.t1
chr7.1 CDS 35379614 35380366 35379614 ID=cds.MS.gene94735.t1;Parent=MS.gene94735.t1
chr7.1 exon 35380439 35380531 35380439 ID=MS.gene94735.t1.exon4;Parent=MS.gene94735.t1
chr7.1 CDS 35380439 35380531 35380439 ID=cds.MS.gene94735.t1;Parent=MS.gene94735.t1
Gene Sequence

>MS.gene94735

ATGGCTTCCATTCAGACTGAATCAGTTGAACAAGTTGATAATGTTCGCTTGAGAGTTTTGGTGGACAAAGAAAAGAACAAAGTTGTGTATGCTGAGGCTGGGAAGGATTTCGTTGATGCTCTCTTCAGCTTCTTAACATTGCCTTTAGGGACTATTGCTAGACTCGTTGCTAAGGACTCAAATATTGAAGCAGTGAGATTTGGCAGCATTAGTTCATTGTATCAAAGTGTGTCAGATCTTGATCAACAATATTTGTGCTCACCTACATGCAAGGAAATGCTACTACAACCAAGAAACTCCATGGAAGATTACTGCCGACAGCTGAAACTGAATATAGACGACACAGAACCCTTGCAGTACTTTGTTTGCGAGAATTGGGATTGTAGAAAAAAGGTAACAGGATGCCTTTTGAGCATTTTTACAAATAAAAAATGCTATTGTGGGAAAGTAATGAACAGCGAAGTATTCCCTACAGGTTTAAATCCAGAAAATGGTTTTGTAAAGGAAAATGCTACTTTTATCATTTGTGACGATCTTTGTGTTATGCCTAATGTTTTTGGAGCAAGTTTAGATATACTTCTAAAGCTTGGAGTCGAGACTATTGATGCTATTGAGGAACAAGCTGTTGACATCAACAAGAAAGAGGCATGTTTTTTCAGCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATATATATATATATATATATATATATATATATATTTGTATGTATCATCTTTGAATATTGATTATTTTCTCTAATTTATTATTTCTTATTGGATTTGTATAGGTAGTTGATCTTCTCAAGTTATCATTAATCTCAAAGACCCCTTTGACGAATTTTATTTTACAGAAGAGCCAATCTGTTCATAATTTGAATGTAAGAAGCAATATTGAGTTTCCGATTGGAGAGCTGCTACCATCCGATGAGGATAGACAAATGTCTGTGAAAGTGACACTAAGAAAATCAAATGAACAAATTCTGTTTGTTGAAGCAGGCGATGATTTTATTGACTTTGTTTTTAGTCTTATAACTTTCCCCTTAGGAGGAGTGTTGCATATGCTTCAAGGATTCTCTTCTTTAAGCTGCATTGATAACTTATATAAGAGCTTTTCTGATTTGAGTCCGGACATATATTTAATGTCAGAGGGGCTCAAAGACAAATTATGTAAGCCTCTCATTGCCCCACAGTTTGAACTCAAGAACCAGATATTACCAATTGGTGCTGCTTTCTTACCTGTGAATTATTGTCATACTTACTATGATTACACAAGGCAGAGGTATAATACCAACCTTACAAAAGAAATGGTGTATTCTAACTATAATACAATTTATGAAGAAAAGCATGTACCATTTAAAGTGGTTGATCCCAAGTCTTCCATTGCAAAATCATCTTATGCCAAAGGACCATCAATGTATATGGTGACAAACGACTTGTGTGTGACTCCAATGTCGTCCATTTCTACTATGTCATTTCTAAAAAGATCTAAAGTCCCTCTATATGATTTGGAGGAAAGAGTCATCAAAATTGGTGTCAAGGAGGTATGCACATGTTCATCTTGTAATTGTTTTTAATTTGTTAACACTACACTTACTTTTGGTTACATGTTACAGGGTCTCAGTATACTTAATGCTTCACTGACCTCAACTTCTGCTTTGACAAATGGTCTCAACCAATTTATAAGAACTGTTAAGGTGGAGAAATGA
Protein sequence

>MS.gene94735.t1

MASIQTESVEQVDNVRLRVLVDKEKNKVVYAEAGKDFVDALFSFLTLPLGTIARLVAKDSNIEAVRFGSISSLYQSVSDLDQQYLCSPTCKEMLLQPRNSMEDYCRQLKLNIDDTEPLQYFVCENWDCRKKENATFIICDDLCVMPNVFGASLDILLKLGVETIDAIEEQAVDINKKEVVDLLKLSLISKTPLTNFILQKSQSVHNLNVRSNIEFPIGELLPSDEDRQMSVKVTLRKSNEQILFVEAGDDFIDFVFSLITFPLGGVLHMLQGFSSLSCIDNLYKSFSDLSPDIYLMSEGLKDKLCKPLIAPQFELKNQILPIGAAFLPVNYCHTYYDYTRQRYNTNLTKEMVYSNYNTIYEEKHVPFKVVDPKSSIAKSSYAKGPSMYMVTNDLCVTPMSSISTMSFLKRSKVPLYDLEERVIKIGVKEGLSILNASLTSTSALTNGLNQFIRTVKVEK