AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89290.t1 MTR_7g063900 92.623 488 36 0 1 488 1 488 0.0 904
MS.gene89290.t1 MTR_7g063890 73.770 488 125 3 2 488 19 504 0.0 677
MS.gene89290.t1 MTR_7g062280 55.268 503 198 8 1 488 1 491 0.0 517
MS.gene89290.t1 MTR_7g063840 56.415 491 193 7 1 488 1 473 1.27e-178 509
MS.gene89290.t1 MTR_7g062300 56.851 489 186 11 1 481 1 472 1.47e-176 504
MS.gene89290.t1 MTR_7g063880 54.786 491 189 10 2 486 3 466 8.41e-171 489
MS.gene89290.t1 MTR_7g063820 56.137 497 196 10 1 488 1 484 1.06e-167 482
MS.gene89290.t1 MTR_7g063660 54.508 488 204 10 5 488 4 477 2.59e-167 481
MS.gene89290.t1 MTR_7g063920 54.303 488 168 7 2 488 3 436 9.86e-167 478
MS.gene89290.t1 MTR_7g063830 53.157 491 170 10 1 483 1 439 1.67e-163 470
MS.gene89290.t1 MTR_3g007740 52.024 494 172 14 3 483 2 443 1.15e-143 419
MS.gene89290.t1 MTR_7g063670 48.776 490 197 11 8 488 13 457 1.38e-131 389
MS.gene89290.t1 MTR_7g066570 42.942 503 248 13 3 486 2 484 6.98e-118 358
MS.gene89290.t1 MTR_7g066430 42.276 492 255 10 10 482 4 485 6.04e-111 338
MS.gene89290.t1 MTR_7g066410 40.996 522 260 9 1 483 1 513 1.25e-108 332
MS.gene89290.t1 MTR_7g066260 40.927 496 236 13 1 480 6 460 8.34e-104 319
MS.gene89290.t1 MTR_7g066260 26.230 244 146 8 13 255 272 482 3.17e-14 75.1
MS.gene89290.t1 MTR_3g065200 43.562 466 197 14 10 469 3 408 2.55e-103 317
MS.gene89290.t1 MTR_7g058710 38.552 511 259 15 2 488 4 483 4.50e-102 314
MS.gene89290.t1 MTR_7g066340 40.241 497 238 15 1 482 1 453 8.59e-100 308
MS.gene89290.t1 MTR_7g066340 28.452 239 131 9 6 239 260 463 1.85e-17 85.1
MS.gene89290.t1 MTR_7g012680 39.521 501 237 11 2 488 3 451 4.36e-98 303
MS.gene89290.t1 MTR_7g066350 38.776 490 243 11 1 478 1 445 5.16e-91 285
MS.gene89290.t1 MTR_7g066350 27.309 249 149 9 252 486 9 239 6.49e-15 77.4
MS.gene89290.t1 MTR_7g066580 37.938 485 237 13 16 479 1 442 1.26e-90 283
MS.gene89290.t1 MTR_7g066360 38.508 496 235 14 2 479 3 446 5.54e-87 275
MS.gene89290.t1 MTR_1g041315 36.907 485 233 14 9 466 13 451 2.71e-83 266
MS.gene89290.t1 MTR_1g041315 26.852 216 121 9 3 216 271 451 9.71e-13 70.5
MS.gene89290.t1 MTR_7g066290 37.103 504 224 15 1 482 1 433 1.36e-82 262
MS.gene89290.t1 MTR_7g066400 35.329 501 233 14 1 478 1 433 1.16e-80 258
MS.gene89290.t1 MTR_7g063720 51.751 257 94 6 232 486 2 230 3.19e-78 244
MS.gene89290.t1 MTR_7g063720 30.876 217 125 8 13 226 26 220 1.62e-19 88.2
MS.gene89290.t1 MTR_7g066480 44.272 323 167 4 10 323 16 334 1.91e-75 244
MS.gene89290.t1 MTR_7g066480 48.810 84 43 0 400 483 339 422 4.14e-14 74.7
MS.gene89290.t1 MTR_4g019310 35.167 509 280 18 4 482 2 490 2.19e-74 243
MS.gene89290.t1 MTR_7g066490 44.375 320 155 7 11 323 17 320 5.08e-74 239
MS.gene89290.t1 MTR_7g066490 40.367 109 56 1 375 483 309 408 1.38e-12 69.7
MS.gene89290.t1 MTR_2g029400 35.244 471 218 11 9 471 13 404 1.39e-72 236
MS.gene89290.t1 MTR_7g066310 34.810 474 209 11 9 480 6 381 2.59e-71 232
MS.gene89290.t1 MTR_7g066310 29.317 249 136 9 6 252 190 400 1.42e-17 85.1
MS.gene89290.t1 MTR_7g058700 35.246 488 204 11 22 488 531 927 1.47e-70 241
MS.gene89290.t1 MTR_7g100420 45.092 326 160 7 153 478 87 393 4.33e-68 224
MS.gene89290.t1 MTR_7g100420 71.154 52 15 0 2 53 31 82 6.31e-16 80.1
MS.gene89290.t1 MTR_7g100420 27.660 235 153 7 10 236 177 402 4.27e-11 65.1
MS.gene89290.t1 MTR_4g017440 32.749 513 292 15 5 482 8 502 5.58e-65 218
MS.gene89290.t1 MTR_7g062270 57.368 190 67 4 3 184 2 185 3.74e-64 213
MS.gene89290.t1 MTR_7g062270 28.646 192 98 8 253 429 11 178 2.07e-11 65.9
MS.gene89290.t1 MTR_7g063850 43.408 311 152 8 179 488 1 288 5.65e-64 209
MS.gene89290.t1 MTR_4g017830 32.370 519 296 19 1 482 1 501 2.87e-63 214
MS.gene89290.t1 MTR_4g017410 33.205 518 275 18 3 483 2 485 8.13e-63 213
MS.gene89290.t1 MTR_4g017470 30.980 510 283 12 3 483 2 471 5.58e-62 210
MS.gene89290.t1 MTR_4g017610 31.496 508 285 18 1 478 1 475 7.21e-57 196
MS.gene89290.t1 MTR_7g063690 44.523 283 89 7 2 279 3 222 7.77e-57 189
MS.gene89290.t1 MTR_4g019340 31.349 504 281 15 1 470 29 501 1.25e-55 194
MS.gene89290.t1 MTR_7g066280 34.053 417 225 16 89 482 1 390 2.60e-49 174
MS.gene89290.t1 MTR_1g014060 46.000 200 103 4 19 215 9 206 7.09e-49 172
MS.gene89290.t1 MTR_1g014060 35.268 224 109 8 271 488 197 390 1.71e-29 119
MS.gene89290.t1 MTR_1g014060 28.241 216 118 8 265 465 13 206 1.20e-14 75.9
MS.gene89290.t1 MTR_4g017550 30.658 486 255 18 40 479 21 470 6.32e-46 167
MS.gene89290.t1 MTR_4g017550 28.870 239 128 9 10 225 247 466 2.83e-13 72.4
MS.gene89290.t1 MTR_7g066680 35.370 311 147 8 209 478 37 334 4.37e-41 150
MS.gene89290.t1 MTR_7g066680 26.432 227 128 9 4 211 80 286 7.39e-13 70.1
MS.gene89290.t1 MTR_8g023240 26.392 485 303 14 7 474 34 481 2.77e-40 153
MS.gene89290.t1 MTR_8g445860 29.958 237 141 7 10 232 13 238 2.83e-26 107
MS.gene89290.t1 MTR_8g445860 28.870 239 143 6 248 475 9 231 2.23e-22 96.3
MS.gene89290.t1 MTR_0150s0010 30.120 249 144 7 1 231 1 237 1.51e-25 105
MS.gene89290.t1 MTR_0150s0010 32.051 234 149 7 246 475 4 231 1.10e-21 94.4
MS.gene89290.t1 MTR_1g115440 30.081 246 146 7 2 231 3 238 5.74e-24 100
MS.gene89290.t1 MTR_2g067310 35.829 187 77 6 10 192 43 190 1.02e-20 91.7
MS.gene89290.t1 MTR_7g063760 55.556 72 31 1 418 488 2 73 1.03e-19 83.6
MS.gene89290.t1 MTR_1g115455 28.226 248 144 6 3 232 2 233 2.62e-19 87.4
MS.gene89290.t1 MTR_1g115455 27.686 242 149 8 245 476 2 227 1.59e-13 70.5
MS.gene89290.t1 MTR_7g063870 70.175 57 17 0 4 60 25 81 7.35e-19 86.7
MS.gene89290.t1 MTR_7g063870 56.452 62 27 0 155 216 96 157 5.48e-14 72.4
MS.gene89290.t1 MTR_1g115450 33.600 125 74 3 7 127 4 123 3.05e-14 70.1
MS.gene89290.t1 MTR_1g115450 34.524 84 55 0 248 331 3 86 1.10e-11 62.8
MS.gene89290.t1 MTR_7g066390 46.341 82 40 2 399 480 43 120 1.35e-13 68.9
MS.gene89290.t1 MTR_8g445920 42.045 88 46 2 1 88 1 83 8.46e-13 65.1
MS.gene89290.t1 MTR_8g044890 42.045 88 46 2 1 88 1 83 8.46e-13 65.1
MS.gene89290.t1 MTR_1g115470 41.176 102 52 3 10 109 6 101 1.61e-12 69.7
MS.gene89290.t1 MTR_4g019240 36.522 115 61 4 6 110 7 119 3.59e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89290.t1 AT5G01150 31.361 507 294 15 3 483 2 480 5.74e-63 213
MS.gene89290.t1 AT5G01120 34.553 492 282 15 11 478 10 485 1.38e-62 212
MS.gene89290.t1 AT5G01120 27.083 240 147 10 5 230 262 487 2.60e-11 66.2
MS.gene89290.t1 AT3G09140 32.233 515 296 14 1 483 1 494 3.25e-61 208
MS.gene89290.t1 AT5G43240 33.602 497 284 15 11 478 10 489 9.08e-59 202
MS.gene89290.t1 AT5G43240 33.602 497 284 15 11 478 10 489 9.08e-59 202
MS.gene89290.t1 AT5G43240 33.602 497 284 15 11 478 10 489 9.08e-59 202
MS.gene89290.t1 AT3G09140 30.571 543 296 15 1 483 1 522 3.52e-56 196
MS.gene89290.t1 AT3G09110 34.808 339 198 5 10 336 9 336 2.70e-55 188
MS.gene89290.t1 AT5G01130 31.076 502 278 14 3 488 2 451 6.50e-55 190
MS.gene89290.t1 AT5G01140 30.572 507 280 19 3 488 2 457 3.94e-53 186
MS.gene89290.t1 AT3G09120 34.185 313 187 6 9 306 5 313 7.18e-43 154
MS.gene89290.t1 AT3G09120 27.615 239 144 8 252 476 6 229 2.52e-15 77.4
MS.gene89290.t1 AT5G37320 26.810 511 298 14 15 487 13 485 9.68e-36 139
MS.gene89290.t1 AT5G43240 31.085 341 200 13 156 478 22 345 1.04e-21 97.1

Find 79 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCATTTCCTTTAGGTGATT+TGG 0.164558 7.1:-37694753 None:intergenic
TAATCTTCAGAAGAGTTATT+TGG 0.189129 7.1:-37693728 None:intergenic
TCTCTGACAGATTTGTTTCT+AGG 0.224145 7.1:+37694224 MS.gene89290:CDS
CTTAGTATGCTTCAGAATTA+TGG 0.229053 7.1:+37694001 MS.gene89290:CDS
GGAGGAGTCGTTCGTATATT+AGG 0.243181 7.1:+37694419 MS.gene89290:CDS
TAACCATCATCATTTCCTTT+AGG 0.299565 7.1:-37694761 None:intergenic
TCATTTCCTTTAGGTGATTT+GGG 0.316839 7.1:-37694752 None:intergenic
AAGAGAAAACACTTGAATTC+TGG 0.326652 7.1:-37694262 None:intergenic
GATTGTTTCTGCATCAATAA+TGG 0.349655 7.1:+37693818 MS.gene89290:CDS
TGCAAGTTTAATTTGAAGTA+AGG 0.354969 7.1:-37694557 None:intergenic
AATCTTCAGAAGAGTTATTT+GGG 0.363668 7.1:-37693727 None:intergenic
CAAAGTACCTCATATGTTGC+AGG 0.372770 7.1:+37693792 MS.gene89290:CDS
ATCAATGTTAAGTTTAAGAT+TGG 0.374669 7.1:-37693756 None:intergenic
ATTAGGAGGGAACTGTTCTA+TGG 0.374705 7.1:+37694436 MS.gene89290:CDS
GAAGATAGGAGTCGTGAATA+TGG 0.383191 7.1:+37694683 MS.gene89290:CDS
AGTTTACTCACATTTCCATT+AGG 0.384717 7.1:+37694398 MS.gene89290:CDS
CTCAGCAAATAAGACTTTGT+TGG 0.395054 7.1:-37693513 None:intergenic
ACACTTGAATTCTGGATCAA+TGG 0.401212 7.1:-37694254 None:intergenic
ATACGAACGACTCCTCCTAA+TGG 0.405838 7.1:-37694413 None:intergenic
AAAGTCTTATTTGCTGAGGC+TGG 0.410372 7.1:+37693518 MS.gene89290:CDS
AGATGGACTAAGAACTTATA+TGG 0.410621 7.1:+37694793 MS.gene89290:CDS
AAGACTTGTTGATCCACATT+TGG 0.411738 7.1:+37694532 MS.gene89290:CDS
TTCAAACAACCTATGGTAAC+TGG 0.414343 7.1:-37693629 None:intergenic
GCGAGTGCGACTGAAACTTT+TGG 0.416530 7.1:+37693478 MS.gene89290:CDS
CCGGTGAATTCTACTGAGTT+CGG 0.436160 7.1:-37693977 None:intergenic
TAACAAAAGTAACACCTTCT+CGG 0.440157 7.1:-37693931 None:intergenic
CAACATATGAGGTACTTTGT+AGG 0.472765 7.1:-37693788 None:intergenic
TCTTACCTCCTTGATGCCAA+TGG 0.481755 7.1:-37694918 None:intergenic
TCTCAACGTTACTAAAGAAA+AGG 0.484363 7.1:+37694057 MS.gene89290:CDS
AAATGAGTTCAAACAACCTA+TGG 0.487108 7.1:-37693636 None:intergenic
AAATGATGATGGTTATATCA+AGG 0.487223 7.1:+37694769 MS.gene89290:CDS
CACTTATTGACCAATGTTGA+GGG 0.487959 7.1:+37695101 MS.gene89290:CDS
GATGACTACTAACTAGGTTC+AGG 0.489314 7.1:-37694730 None:intergenic
AATCAAACCTGCAACATATG+AGG 0.493783 7.1:-37693799 None:intergenic
TATTCCTCTTGATGATATGA+AGG 0.494216 7.1:+37694883 MS.gene89290:CDS
GCAGTTATGAGAAACATGTT+AGG 0.494533 7.1:+37694705 MS.gene89290:CDS
TCATCATCCGCTCTAACAAA+TGG 0.494553 7.1:+37695071 MS.gene89290:CDS
TTCACACGAGGCTCTTGAAT+AGG 0.500243 7.1:-37694587 None:intergenic
CATAATTCTGAAGCATACTA+AGG 0.507361 7.1:-37694000 None:intergenic
AAGAAAATTGAACGACTCAA+AGG 0.511697 7.1:-37693884 None:intergenic
ATTTGGGATGACTACTAACT+AGG 0.512518 7.1:-37694736 None:intergenic
AAAAGACATAAGTTCAGTAA+AGG 0.513517 7.1:+37694027 MS.gene89290:CDS
AAGGAAAAGCTTGTCACCAT+TGG 0.514654 7.1:+37694902 MS.gene89290:CDS
AAGTCTTATTTGCTGAGGCT+GGG 0.515962 7.1:+37693519 MS.gene89290:CDS
GTACAGAAGGACTCAAACAT+AGG 0.519714 7.1:+37693605 MS.gene89290:CDS
AGTTTCTTGACATTGCCGTT+AGG 0.520091 7.1:+37693566 MS.gene89290:CDS
TTACTCACATTTCCATTAGG+AGG 0.523531 7.1:+37694401 MS.gene89290:CDS
GCTTGTCACCATTGGCATCA+AGG 0.526563 7.1:+37694910 MS.gene89290:CDS
AACTTAACATTGATGACACT+CGG 0.529548 7.1:+37693765 MS.gene89290:CDS
AAAATAGAAAATGTAGAAGA+TGG 0.529603 7.1:-37694839 None:intergenic
AGTCATCCCAAATCACCTAA+AGG 0.545154 7.1:+37694746 MS.gene89290:CDS
TCACTTATTGACCAATGTTG+AGG 0.547008 7.1:+37695100 MS.gene89290:CDS
TGTTCTATGGGCAACATCGA+TGG 0.547814 7.1:+37694449 MS.gene89290:CDS
GATGGTTATATCAAGGGAGA+TGG 0.548149 7.1:+37694776 MS.gene89290:CDS
AATGATGATGGTTATATCAA+GGG 0.548455 7.1:+37694770 MS.gene89290:CDS
TCACCTAAAGGAAATGATGA+TGG 0.552139 7.1:+37694758 MS.gene89290:CDS
TTGAAGTAAGGTGCCAAATG+TGG 0.553286 7.1:-37694545 None:intergenic
GGGAAAGGATTTGTCCGAGA+AGG 0.554962 7.1:+37693917 MS.gene89290:CDS
TTATATGGTAACAGATGACT+TGG 0.560415 7.1:+37694808 MS.gene89290:CDS
TTAGGAGGGAACTGTTCTAT+GGG 0.561101 7.1:+37694437 MS.gene89290:CDS
ATTCTGAAGCATACTAAGGC+CGG 0.571691 7.1:-37693996 None:intergenic
GGAGTCGTTCGTATATTAGG+AGG 0.577097 7.1:+37694422 MS.gene89290:CDS
CTTCTGTACGAGTCTTGCAA+TGG 0.578110 7.1:-37693591 None:intergenic
GGCAAGATATTGTATGCTCA+AGG 0.601152 7.1:+37694347 MS.gene89290:CDS
TGTTTGAGTAGTAGCAGCCA+TGG 0.605494 7.1:-37693450 None:intergenic
CAACAAAGTCTTATTTGCTG+AGG 0.606736 7.1:+37693514 MS.gene89290:CDS
CATTGCAAGACTCGTACAGA+AGG 0.606928 7.1:+37693592 MS.gene89290:CDS
CCGAACTCAGTAGAATTCAC+CGG 0.620350 7.1:+37693977 MS.gene89290:CDS
GGCTGCTACTACTCAAACAG+AGG 0.620428 7.1:+37693454 MS.gene89290:CDS
ACGAAGACCATTTGTTAGAG+CGG 0.622268 7.1:-37695078 None:intergenic
CTTATTGACCAATGTTGAGG+GGG 0.626193 7.1:+37695103 MS.gene89290:CDS
CTAGTTTATAGAAAATCAGA+CGG 0.646775 7.1:+37694326 MS.gene89290:CDS
AGTCTTGCAATGGTTCCTAA+CGG 0.648370 7.1:-37693581 None:intergenic
GAGTCGTTCGTATATTAGGA+GGG 0.655143 7.1:+37694423 MS.gene89290:CDS
AACATAGGACCAGTTACCAT+AGG 0.663829 7.1:+37693620 MS.gene89290:CDS
ACTTATTGACCAATGTTGAG+GGG 0.669366 7.1:+37695102 MS.gene89290:CDS
TAACAATAATGCTTCACACG+AGG 0.697194 7.1:-37694599 None:intergenic
TGTCACCATTGGCATCAAGG+AGG 0.741971 7.1:+37694913 MS.gene89290:CDS
TGGTTTGTACAAGAGCATAG+CGG 0.742308 7.1:+37694469 MS.gene89290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATAAGTTTCAAACTTTT+CGG + chr7.1:37694624-37694643 MS.gene89290:CDS 15.0%
!! AAAATAGAAAATGTAGAAGA+TGG - chr7.1:37694842-37694861 None:intergenic 20.0%
!!! ATCAATGTTAAGTTTAAGAT+TGG - chr7.1:37693759-37693778 None:intergenic 20.0%
!!! CAATTTTCTTGAAACATTTT+GGG + chr7.1:37693897-37693916 MS.gene89290:CDS 20.0%
!!! TAATAAGTTTCAAACTTTTC+GGG + chr7.1:37694625-37694644 MS.gene89290:CDS 20.0%
!!! TCAATTTTCTTGAAACATTT+TGG + chr7.1:37693896-37693915 MS.gene89290:CDS 20.0%
! AAAAGACATAAGTTCAGTAA+AGG + chr7.1:37694027-37694046 MS.gene89290:CDS 25.0%
! AATCTTCAGAAGAGTTATTT+GGG - chr7.1:37693730-37693749 None:intergenic 25.0%
! ACTAACAAAAATTGTATGGA+TGG + chr7.1:37693857-37693876 MS.gene89290:CDS 25.0%
! CTAGTTTATAGAAAATCAGA+CGG + chr7.1:37694326-37694345 MS.gene89290:CDS 25.0%
! TAATCTTCAGAAGAGTTATT+TGG - chr7.1:37693731-37693750 None:intergenic 25.0%
! TTCGACTAACAAAAATTGTA+TGG + chr7.1:37693853-37693872 MS.gene89290:CDS 25.0%
!!! AAATGATGATGGTTATATCA+AGG + chr7.1:37694769-37694788 MS.gene89290:CDS 25.0%
!!! AATGATGATGGTTATATCAA+GGG + chr7.1:37694770-37694789 MS.gene89290:CDS 25.0%
!!! TGCAAGTTTAATTTGAAGTA+AGG - chr7.1:37694560-37694579 None:intergenic 25.0%
AAATGAGTTCAAACAACCTA+TGG - chr7.1:37693639-37693658 None:intergenic 30.0%
AAGAAAATTGAACGACTCAA+AGG - chr7.1:37693887-37693906 None:intergenic 30.0%
AAGAGAAAACACTTGAATTC+TGG - chr7.1:37694265-37694284 None:intergenic 30.0%
AGTTTACTCACATTTCCATT+AGG + chr7.1:37694398-37694417 MS.gene89290:CDS 30.0%
ATCATTTCCTTTAGGTGATT+TGG - chr7.1:37694756-37694775 None:intergenic 30.0%
CTTAGTATGCTTCAGAATTA+TGG + chr7.1:37694001-37694020 MS.gene89290:CDS 30.0%
GAACGATTAGTATTATGTAC+AGG + chr7.1:37694163-37694182 MS.gene89290:intron 30.0%
TAACAAAAGTAACACCTTCT+CGG - chr7.1:37693934-37693953 None:intergenic 30.0%
TAACCATCATCATTTCCTTT+AGG - chr7.1:37694764-37694783 None:intergenic 30.0%
TCATTTCCTTTAGGTGATTT+GGG - chr7.1:37694755-37694774 None:intergenic 30.0%
TCTCAACGTTACTAAAGAAA+AGG + chr7.1:37694057-37694076 MS.gene89290:CDS 30.0%
TTATATGGTAACAGATGACT+TGG + chr7.1:37694808-37694827 MS.gene89290:CDS 30.0%
! AACTTAACATTGATGACACT+CGG + chr7.1:37693765-37693784 MS.gene89290:CDS 30.0%
! TATTCCTCTTGATGATATGA+AGG + chr7.1:37694883-37694902 MS.gene89290:CDS 30.0%
! TTTTCATTAGCGATGAAGAT+AGG + chr7.1:37694669-37694688 MS.gene89290:CDS 30.0%
! TTTTCCTTCATATCATCAAG+AGG - chr7.1:37694890-37694909 None:intergenic 30.0%
!! AGATGGACTAAGAACTTATA+TGG + chr7.1:37694793-37694812 MS.gene89290:CDS 30.0%
!! CATAATTCTGAAGCATACTA+AGG - chr7.1:37694003-37694022 None:intergenic 30.0%
!! GATTGTTTCTGCATCAATAA+TGG + chr7.1:37693818-37693837 MS.gene89290:CDS 30.0%
!! TTCTTGAAACATTTTGGGAA+AGG + chr7.1:37693902-37693921 MS.gene89290:CDS 30.0%
AATCAAACCTGCAACATATG+AGG - chr7.1:37693802-37693821 None:intergenic 35.0%
ACACTTGAATTCTGGATCAA+TGG - chr7.1:37694257-37694276 None:intergenic 35.0%
ACTTATTGACCAATGTTGAG+GGG + chr7.1:37695102-37695121 MS.gene89290:CDS 35.0%
CACTTATTGACCAATGTTGA+GGG + chr7.1:37695101-37695120 MS.gene89290:CDS 35.0%
CTCAGCAAATAAGACTTTGT+TGG - chr7.1:37693516-37693535 None:intergenic 35.0%
GCAGTTATGAGAAACATGTT+AGG + chr7.1:37694705-37694724 MS.gene89290:CDS 35.0%
TAACAATAATGCTTCACACG+AGG - chr7.1:37694602-37694621 None:intergenic 35.0%
TCACCTAAAGGAAATGATGA+TGG + chr7.1:37694758-37694777 MS.gene89290:CDS 35.0%
TCACTTATTGACCAATGTTG+AGG + chr7.1:37695100-37695119 MS.gene89290:CDS 35.0%
TTACTCACATTTCCATTAGG+AGG + chr7.1:37694401-37694420 MS.gene89290:CDS 35.0%
TTCAAACAACCTATGGTAAC+TGG - chr7.1:37693632-37693651 None:intergenic 35.0%
! ATTTGGGATGACTACTAACT+AGG - chr7.1:37694739-37694758 None:intergenic 35.0%
! CAACATATGAGGTACTTTGT+AGG - chr7.1:37693791-37693810 None:intergenic 35.0%
! GAACTCATTTTATCGAAGTG+TGG + chr7.1:37693649-37693668 MS.gene89290:CDS 35.0%
! TCTCTGACAGATTTGTTTCT+AGG + chr7.1:37694224-37694243 MS.gene89290:CDS 35.0%
!! AAGACTTGTTGATCCACATT+TGG + chr7.1:37694532-37694551 MS.gene89290:CDS 35.0%
!! CAACAAAGTCTTATTTGCTG+AGG + chr7.1:37693514-37693533 MS.gene89290:CDS 35.0%
AACATAGGACCAGTTACCAT+AGG + chr7.1:37693620-37693639 MS.gene89290:CDS 40.0%
AAGGAAAAGCTTGTCACCAT+TGG + chr7.1:37694902-37694921 MS.gene89290:CDS 40.0%
AGTCATCCCAAATCACCTAA+AGG + chr7.1:37694746-37694765 MS.gene89290:CDS 40.0%
AGTCTTGCAATGGTTCCTAA+CGG - chr7.1:37693584-37693603 None:intergenic 40.0%
AGTTTCTTGACATTGCCGTT+AGG + chr7.1:37693566-37693585 MS.gene89290:CDS 40.0%
ATTAGGAGGGAACTGTTCTA+TGG + chr7.1:37694436-37694455 MS.gene89290:CDS 40.0%
CTTATTGACCAATGTTGAGG+GGG + chr7.1:37695103-37695122 MS.gene89290:CDS 40.0%
GAAGATAGGAGTCGTGAATA+TGG + chr7.1:37694683-37694702 MS.gene89290:CDS 40.0%
GAGTCGTTCGTATATTAGGA+GGG + chr7.1:37694423-37694442 MS.gene89290:CDS 40.0%
GATGACTACTAACTAGGTTC+AGG - chr7.1:37694733-37694752 None:intergenic 40.0%
GATGGTTATATCAAGGGAGA+TGG + chr7.1:37694776-37694795 MS.gene89290:CDS 40.0%
GGCAAGATATTGTATGCTCA+AGG + chr7.1:37694347-37694366 MS.gene89290:CDS 40.0%
GTACAGAAGGACTCAAACAT+AGG + chr7.1:37693605-37693624 MS.gene89290:CDS 40.0%
TCATCATCCGCTCTAACAAA+TGG + chr7.1:37695071-37695090 MS.gene89290:CDS 40.0%
TTAGGAGGGAACTGTTCTAT+GGG + chr7.1:37694437-37694456 MS.gene89290:CDS 40.0%
! ACGAAGACCATTTGTTAGAG+CGG - chr7.1:37695081-37695100 None:intergenic 40.0%
! CAAAGTACCTCATATGTTGC+AGG + chr7.1:37693792-37693811 MS.gene89290:CDS 40.0%
! TGGTTTGTACAAGAGCATAG+CGG + chr7.1:37694469-37694488 MS.gene89290:CDS 40.0%
! TTGAAGTAAGGTGCCAAATG+TGG - chr7.1:37694548-37694567 None:intergenic 40.0%
!! AAAGTCTTATTTGCTGAGGC+TGG + chr7.1:37693518-37693537 MS.gene89290:CDS 40.0%
!! AAGTCTTATTTGCTGAGGCT+GGG + chr7.1:37693519-37693538 MS.gene89290:CDS 40.0%
!! ATTCTGAAGCATACTAAGGC+CGG - chr7.1:37693999-37694018 None:intergenic 40.0%
ATACGAACGACTCCTCCTAA+TGG - chr7.1:37694416-37694435 None:intergenic 45.0%
CATTGCAAGACTCGTACAGA+AGG + chr7.1:37693592-37693611 MS.gene89290:CDS 45.0%
CCGAACTCAGTAGAATTCAC+CGG + chr7.1:37693977-37693996 MS.gene89290:CDS 45.0%
CCGGTGAATTCTACTGAGTT+CGG - chr7.1:37693980-37693999 None:intergenic 45.0%
CTTCTGTACGAGTCTTGCAA+TGG - chr7.1:37693594-37693613 None:intergenic 45.0%
GGAGGAGTCGTTCGTATATT+AGG + chr7.1:37694419-37694438 MS.gene89290:CDS 45.0%
GGAGTCGTTCGTATATTAGG+AGG + chr7.1:37694422-37694441 MS.gene89290:CDS 45.0%
TCTTACCTCCTTGATGCCAA+TGG - chr7.1:37694921-37694940 None:intergenic 45.0%
TGTTCTATGGGCAACATCGA+TGG + chr7.1:37694449-37694468 MS.gene89290:CDS 45.0%
TTCACACGAGGCTCTTGAAT+AGG - chr7.1:37694590-37694609 None:intergenic 45.0%
CTCAGACACTGCAACAACAC+AGG - chr7.1:37695029-37695048 None:intergenic 50.0%
GCTTGTCACCATTGGCATCA+AGG + chr7.1:37694910-37694929 MS.gene89290:CDS 50.0%
GGCTGCTACTACTCAAACAG+AGG + chr7.1:37693454-37693473 MS.gene89290:CDS 50.0%
GGGAAAGGATTTGTCCGAGA+AGG + chr7.1:37693917-37693936 MS.gene89290:CDS 50.0%
TGTCACCATTGGCATCAAGG+AGG + chr7.1:37694913-37694932 MS.gene89290:CDS 50.0%
! GCGAGTGCGACTGAAACTTT+TGG + chr7.1:37693478-37693497 MS.gene89290:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 37693452 37695130 37693452 ID=MS.gene89290
chr7.1 mRNA 37693452 37695130 37693452 ID=MS.gene89290.t1;Parent=MS.gene89290
chr7.1 exon 37693452 37694078 37693452 ID=MS.gene89290.t1.exon1;Parent=MS.gene89290.t1
chr7.1 CDS 37693452 37694078 37693452 ID=cds.MS.gene89290.t1;Parent=MS.gene89290.t1
chr7.1 exon 37694185 37694934 37694185 ID=MS.gene89290.t1.exon2;Parent=MS.gene89290.t1
chr7.1 CDS 37694185 37694934 37694185 ID=cds.MS.gene89290.t1;Parent=MS.gene89290.t1
chr7.1 exon 37695041 37695130 37695041 ID=MS.gene89290.t1.exon3;Parent=MS.gene89290.t1
chr7.1 CDS 37695041 37695130 37695041 ID=cds.MS.gene89290.t1;Parent=MS.gene89290.t1
Gene Sequence

>MS.gene89290

ATGGCTGCTACTACTCAAACAGAGGAGCGAGTGCGACTGAAACTTTTGGTGAACAAAGAAACCAACAAAGTCTTATTTGCTGAGGCTGGGAAAGACTTTGTCGATGTTCTATTTAGTTTCTTGACATTGCCGTTAGGAACCATTGCAAGACTCGTACAGAAGGACTCAAACATAGGACCAGTTACCATAGGTTGTTTGAACTCATTTTATCGAAGTGTGGTAGATCTCGACGAAGAGTGTATGCAGACTGAGACAAGTAAAGAAATGATATTACACCCAAATAACTCTTCTGAAGATTATTGCACCAATCTTAAACTTAACATTGATGACACTCGGCCTACAAAGTACCTCATATGTTGCAGGTTTGATTGTTTCTGCATCAATAATGGTTATTTCTACAATTCGACTAACAAAAATTGTATGGATGGAAAACCTTTGAGTCGTTCAATTTTCTTGAAACATTTTGGGAAAGGATTTGTCCGAGAAGGTGTTACTTTTGTTATTTCTGATGATCTGATTGTCAAGCCGAACTCAGTAGAATTCACCGGCCTTAGTATGCTTCAGAATTATGGAATAAAAGACATAAGTTCAGTAAAGGAAATGACTCTCAACGTTACTAAAGAAAAGGTAATATTTTATAGTTGTGTTCGCTAATTTGTTGCTTGCTTCACATACATCGCGTTTTTTAATTTTTGTCATCAATTCATTTTTGAACGATTAGTATTATGTACAGGTACTCGATCTTTTAAAGTGTGCTTTGCTTTCGAAGTCGTCTCTGACAGATTTGTTTCTAGGAAAGAAACCATTGATCCAGAATTCAAGTGTTTTCTCTTGTAATGTTGCAAATAGTAGTAATATCAAAATCAGATTGAAGCTAGTTTATAGAAAATCAGACGGCAAGATATTGTATGCTCAAGGAGAAAAAGATTTTGCAGACTTGCTTTTAAGTTTACTCACATTTCCATTAGGAGGAGTCGTTCGTATATTAGGAGGGAACTGTTCTATGGGCAACATCGATGGTTTGTACAAGAGCATAGCGGATTTGCATGAAAACACATATTTGTCAAGAGAAGCAAAGAAAAGACTTGTTGATCCACATTTGGCACCTTACTTCAAATTAAACTTGCAGATATTACCTATTCAAGAGCCTCGTGTGAAGCATTATTGTTACTATAATAAGTTTCAAACTTTTCGGGATAGTGTTATTCATAATCAATTTTTCATTAGCGATGAAGATAGGAGTCGTGAATATGGCAGTTATGAGAAACATGTTAGGTACCTGAACCTAGTTAGTAGTCATCCCAAATCACCTAAAGGAAATGATGATGGTTATATCAAGGGAGATGGACTAAGAACTTATATGGTAACAGATGACTTGGTCATTGCACCATCTTCTACATTTTCTATTTTACATTTAATCAACAATTTCAATATTCCTCTTGATGATATGAAGGAAAAGCTTGTCACCATTGGCATCAAGGAGGTAAGAAAGAACATAATCTATTCATAGATCTATGTTTCGTGTTATTTTATGCGTTATATTGATTGAATGTATTTACTGCTAACTATATATTCCTGTGTTGTTGCAGTGTCTGAGCATATTAAAAGCAACTTTGTCGTCATCATCCGCTCTAACAAATGGTCTTCGTCACTTATTGACCAATGTTGAGGGGGAGTAA
Protein sequence

>MS.gene89290.t1

MAATTQTEERVRLKLLVNKETNKVLFAEAGKDFVDVLFSFLTLPLGTIARLVQKDSNIGPVTIGCLNSFYRSVVDLDEECMQTETSKEMILHPNNSSEDYCTNLKLNIDDTRPTKYLICCRFDCFCINNGYFYNSTNKNCMDGKPLSRSIFLKHFGKGFVREGVTFVISDDLIVKPNSVEFTGLSMLQNYGIKDISSVKEMTLNVTKEKVLDLLKCALLSKSSLTDLFLGKKPLIQNSSVFSCNVANSSNIKIRLKLVYRKSDGKILYAQGEKDFADLLLSLLTFPLGGVVRILGGNCSMGNIDGLYKSIADLHENTYLSREAKKRLVDPHLAPYFKLNLQILPIQEPRVKHYCYYNKFQTFRDSVIHNQFFISDEDRSREYGSYEKHVRYLNLVSSHPKSPKGNDDGYIKGDGLRTYMVTDDLVIAPSSTFSILHLINNFNIPLDDMKEKLVTIGIKECLSILKATLSSSSALTNGLRHLLTNVEGE