AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055265

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055265.t1 MTR_7g062280 80.612 490 82 1 5 481 3 492 0.0 790
MS.gene055265.t1 MTR_7g062300 81.092 476 83 4 1 473 1 472 0.0 761
MS.gene055265.t1 MTR_7g063920 65.762 479 121 3 3 481 2 437 0.0 592
MS.gene055265.t1 MTR_7g063840 57.442 477 193 7 8 481 5 474 1.99e-175 501
MS.gene055265.t1 MTR_7g063880 57.143 483 186 7 3 480 2 468 1.26e-170 489
MS.gene055265.t1 MTR_7g063660 55.187 482 202 6 7 481 4 478 3.28e-164 473
MS.gene055265.t1 MTR_7g063900 54.747 495 204 9 1 481 1 489 8.13e-164 472
MS.gene055265.t1 MTR_7g063900 27.530 247 154 7 13 243 253 490 2.14e-11 66.2
MS.gene055265.t1 MTR_7g063830 53.236 479 184 9 5 480 3 444 7.14e-155 447
MS.gene055265.t1 MTR_7g063820 53.498 486 214 6 5 481 3 485 3.89e-154 447
MS.gene055265.t1 MTR_3g007740 52.610 479 176 10 8 475 5 443 1.31e-148 432
MS.gene055265.t1 MTR_7g063890 53.753 493 205 11 4 480 19 504 2.01e-144 423
MS.gene055265.t1 MTR_7g063670 50.202 494 194 10 1 481 4 458 9.38e-139 407
MS.gene055265.t1 MTR_7g066570 40.283 494 269 7 1 478 1 484 2.66e-109 335
MS.gene055265.t1 MTR_3g065200 43.982 457 198 12 12 461 3 408 3.21e-106 324
MS.gene055265.t1 MTR_7g066430 41.212 495 244 12 13 474 5 485 2.84e-105 323
MS.gene055265.t1 MTR_7g066410 38.189 508 272 7 10 476 8 514 1.77e-103 319
MS.gene055265.t1 MTR_7g066260 40.771 493 229 10 6 474 9 462 1.92e-103 318
MS.gene055265.t1 MTR_7g058710 37.972 503 271 13 1 481 1 484 7.08e-98 303
MS.gene055265.t1 MTR_7g012680 38.788 495 246 12 1 481 1 452 1.44e-96 299
MS.gene055265.t1 MTR_7g066480 39.789 475 207 10 12 475 16 422 4.50e-96 297
MS.gene055265.t1 MTR_7g066360 41.020 490 224 15 1 470 1 445 2.07e-91 286
MS.gene055265.t1 MTR_7g066340 35.872 499 249 10 1 474 1 453 2.40e-89 281
MS.gene055265.t1 MTR_7g066350 39.203 477 246 10 11 476 8 451 1.09e-88 279
MS.gene055265.t1 MTR_7g066580 38.333 480 232 12 24 477 7 448 2.33e-88 278
MS.gene055265.t1 MTR_7g066580 27.660 235 147 9 11 230 214 440 2.47e-12 69.3
MS.gene055265.t1 MTR_7g066490 37.924 472 204 10 12 474 16 407 2.66e-85 268
MS.gene055265.t1 MTR_7g062270 67.027 185 60 1 4 187 1 185 3.63e-83 262
MS.gene055265.t1 MTR_7g066400 35.091 493 249 11 1 476 1 439 2.99e-81 259
MS.gene055265.t1 MTR_7g063720 54.032 248 97 3 235 481 2 233 8.36e-81 251
MS.gene055265.t1 MTR_7g063720 31.193 218 126 8 14 229 25 220 1.74e-16 79.3
MS.gene055265.t1 MTR_1g041315 35.593 472 247 10 11 458 13 451 7.91e-80 257
MS.gene055265.t1 MTR_1g041315 26.364 220 118 9 5 219 271 451 4.58e-12 68.6
MS.gene055265.t1 MTR_4g019310 34.118 510 288 14 6 481 2 497 1.04e-74 244
MS.gene055265.t1 MTR_7g058700 35.759 481 203 14 24 481 531 928 2.54e-73 249
MS.gene055265.t1 MTR_7g066290 40.822 365 196 7 1 349 1 361 3.01e-72 235
MS.gene055265.t1 MTR_7g066290 61.404 57 22 0 414 470 373 429 4.58e-14 74.3
MS.gene055265.t1 MTR_7g066310 32.618 466 224 8 11 474 6 383 1.63e-66 219
MS.gene055265.t1 MTR_7g066310 30.088 226 116 10 8 229 190 377 2.99e-16 80.9
MS.gene055265.t1 MTR_7g063850 44.375 320 125 10 182 480 1 288 2.98e-65 213
MS.gene055265.t1 MTR_2g029400 32.083 480 229 9 2 463 4 404 5.13e-65 216
MS.gene055265.t1 MTR_4g017830 31.499 527 294 18 1 480 1 507 6.57e-62 211
MS.gene055265.t1 MTR_4g017410 30.755 530 274 17 4 480 1 490 1.10e-55 193
MS.gene055265.t1 MTR_4g017440 31.068 515 289 17 6 474 8 502 9.42e-55 191
MS.gene055265.t1 MTR_4g017610 31.263 499 287 16 4 470 1 475 2.36e-53 186
MS.gene055265.t1 MTR_4g019340 30.550 491 278 14 10 462 36 501 1.38e-52 185
MS.gene055265.t1 MTR_4g017470 28.820 517 290 15 1 480 1 476 4.47e-51 181
MS.gene055265.t1 MTR_7g100420 38.436 307 173 4 168 470 99 393 6.70e-49 173
MS.gene055265.t1 MTR_7g100420 66.000 50 17 0 6 55 33 82 2.37e-12 68.9
MS.gene055265.t1 MTR_7g066280 30.882 408 240 9 91 474 1 390 1.76e-47 169
MS.gene055265.t1 MTR_1g014060 45.894 207 102 7 21 222 9 210 2.77e-45 163
MS.gene055265.t1 MTR_1g014060 39.594 197 104 3 285 481 210 391 2.79e-32 127
MS.gene055265.t1 MTR_1g014060 30.986 213 138 5 268 474 13 222 1.61e-17 84.7
MS.gene055265.t1 MTR_7g066680 34.754 305 146 6 212 470 37 334 3.61e-42 153
MS.gene055265.t1 MTR_7g066680 26.154 195 105 6 4 179 79 253 1.45e-13 72.4
MS.gene055265.t1 MTR_8g023240 26.132 486 289 15 13 468 38 483 1.23e-39 151
MS.gene055265.t1 MTR_4g017550 29.140 477 262 18 42 470 21 469 3.29e-35 137
MS.gene055265.t1 MTR_4g017550 29.412 238 127 8 13 228 248 466 1.12e-13 73.6
MS.gene055265.t1 MTR_7g063690 46.479 142 74 1 143 282 81 222 3.79e-33 126
MS.gene055265.t1 MTR_7g063690 50.000 96 31 3 3 81 2 97 6.55e-17 80.5
MS.gene055265.t1 MTR_7g063760 59.459 74 29 1 409 481 1 74 1.58e-22 91.7
MS.gene055265.t1 MTR_8g445860 31.356 236 138 6 13 235 14 238 4.57e-22 95.5
MS.gene055265.t1 MTR_1g115440 29.114 237 131 8 255 468 11 233 4.94e-21 92.4
MS.gene055265.t1 MTR_1g115440 30.120 249 148 7 1 234 1 238 3.73e-20 89.7
MS.gene055265.t1 MTR_0150s0010 30.738 244 146 7 5 234 3 237 3.08e-19 87.4
MS.gene055265.t1 MTR_7g066390 55.072 69 31 0 402 470 50 118 9.05e-18 80.9
MS.gene055265.t1 MTR_2g067310 36.196 163 65 5 18 180 53 176 1.55e-16 79.3
MS.gene055265.t1 MTR_1g115455 27.755 245 152 7 4 235 1 233 1.37e-14 73.6
MS.gene055265.t1 MTR_7g063870 57.143 56 24 0 6 61 25 80 1.23e-13 71.2
MS.gene055265.t1 MTR_7g063870 55.932 59 26 0 161 219 99 157 9.39e-13 68.6
MS.gene055265.t1 MTR_1g115450 36.585 123 68 4 13 133 8 122 3.65e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055265.t1 AT3G09140 32.554 513 288 15 4 476 1 495 1.05e-62 212
MS.gene055265.t1 AT5G01120 32.335 501 271 15 13 470 10 485 1.51e-58 201
MS.gene055265.t1 AT5G01150 29.981 517 291 14 4 480 1 486 3.15e-58 200
MS.gene055265.t1 AT3G09140 30.869 541 288 16 4 476 1 523 1.27e-57 199
MS.gene055265.t1 AT5G01130 30.972 494 282 13 4 481 1 451 6.32e-57 196
MS.gene055265.t1 AT3G09110 37.421 318 174 9 14 316 11 318 5.87e-54 184
MS.gene055265.t1 AT5G01140 29.268 492 300 11 4 481 1 458 1.17e-53 187
MS.gene055265.t1 AT3G09120 37.152 323 165 8 11 309 5 313 1.38e-49 172
MS.gene055265.t1 AT3G09120 30.435 230 138 7 255 468 6 229 8.86e-15 75.5
MS.gene055265.t1 AT5G43240 29.134 508 282 13 13 470 10 489 1.01e-47 172
MS.gene055265.t1 AT5G43240 29.134 508 282 13 13 470 10 489 1.01e-47 172
MS.gene055265.t1 AT5G43240 29.134 508 282 13 13 470 10 489 1.01e-47 172
MS.gene055265.t1 AT5G37320 27.075 506 293 17 13 476 10 481 1.68e-34 135
MS.gene055265.t1 AT5G43240 25.150 334 201 8 167 470 31 345 6.10e-14 73.6

Find 88 sgRNAs with CRISPR-Local

Find 110 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTGTTATGTTCGGAATT+TGG 0.224670 7.4:-41578528 MS.gene055265:CDS
TAACTAGCTTTAGATTGATT+TGG 0.246947 7.4:+41578909 None:intergenic
GGTGGAATTGTTCGAATATT+TGG 0.267420 7.4:-41578800 MS.gene055265:CDS
TTATCTAATGTGATGATTCT+TGG 0.284310 7.4:-41578494 MS.gene055265:CDS
CATCCGATGATGTCAAATAT+TGG 0.288315 7.4:+41578714 None:intergenic
CCTGGTGTTCTTGTATATTA+TGG 0.298994 7.4:-41578617 MS.gene055265:CDS
TTTGGTCTGTTCCTGGAGTT+TGG 0.304695 7.4:-41579200 MS.gene055265:CDS
AGTGAGCCAAACCATTTGTT+AGG 0.310955 7.4:+41578167 None:intergenic
GTACAAGAGTATAGTTGATT+TGG 0.317989 7.4:-41578744 MS.gene055265:CDS
TACAAGCTTTGGTCTGTTCC+TGG 0.318052 7.4:-41579207 MS.gene055265:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.4:+41578404 None:intergenic
CCCTAGTTCGGTAAAAGAAT+TGG 0.336544 7.4:-41579168 MS.gene055265:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.4:+41579718 None:intergenic
ACTAACTCCAATTTCAGCTT+TGG 0.370659 7.4:-41578411 MS.gene055265:CDS
ATTAGGAACCATTGCGAGAT+TGG 0.373320 7.4:-41579621 MS.gene055265:CDS
TTCTGCCCTAACAAATGGTT+TGG 0.386717 7.4:-41578173 MS.gene055265:CDS
CTTGTATAGTCAATACAGTT+TGG 0.402654 7.4:+41579224 None:intergenic
TGTATTGACTATACAAGCTT+TGG 0.403859 7.4:-41579218 MS.gene055265:CDS
CTAACTCCAATTTCAGCTTT+GGG 0.410822 7.4:-41578410 MS.gene055265:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7.4:-41579686 MS.gene055265:CDS
ATTTGGTGGGAATTGTTCCT+TGG 0.418722 7.4:-41578783 MS.gene055265:CDS
TTGTGTGATGTTGAAATTAG+TGG 0.425723 7.4:-41578938 MS.gene055265:CDS
TCACTTGTTAACTGAAGTTA+AGG 0.432297 7.4:-41578149 MS.gene055265:CDS
TCAACTTCTGCCCTAACAAA+TGG 0.432471 7.4:-41578178 MS.gene055265:CDS
AACCATCCCTTGAGAGATCA+AGG 0.434730 7.4:-41578967 MS.gene055265:CDS
TAATCTTCCGCTGAGTTGAT+TGG 0.438608 7.4:+41579476 None:intergenic
AGAACACCAGGATCAAGAAT+TGG 0.440155 7.4:+41578629 None:intergenic
TACTCCGATTAATGATTTGA+AGG 0.442148 7.4:-41578369 MS.gene055265:CDS
GGGAGAGGTTTAAGGAAAAC+TGG 0.450764 7.4:+41579305 None:intergenic
ATATTACCAATTCTTGATCC+TGG 0.456535 7.4:-41578635 MS.gene055265:CDS
AAAGCTGAAATTGGAGTTAG+TGG 0.457923 7.4:+41578413 None:intergenic
GAATAGAATATTGTTATGTT+CGG 0.460953 7.4:-41578535 MS.gene055265:CDS
TATACCGTTAACAAATCCTT+GGG 0.463791 7.4:+41579283 None:intergenic
TGCTTGCTTAACTGTAACTG+TGG 0.466072 7.4:+41578659 None:intergenic
TCTGAATGTCACCAAAGAAA+AGG 0.469867 7.4:-41579144 MS.gene055265:intron
CTATACCGTTAACAAATCCT+TGG 0.473418 7.4:+41579282 None:intergenic
TTTGGTGGGAATTGTTCCTT+GGG 0.483082 7.4:-41578782 MS.gene055265:CDS
TTGTTCCTTGGGAAGCATCA+AGG 0.483499 7.4:-41578771 MS.gene055265:CDS
CATTAATCGGAGTATTCAAT+CGG 0.492599 7.4:+41578378 None:intergenic
GTAGTGTCTTAGCATATTGA+AGG 0.492781 7.4:-41578212 MS.gene055265:intron
AATCTCGCAATGGTTCCTAA+TGG 0.500485 7.4:+41579623 None:intergenic
CTTGGTGATGGTTATGTCAA+GGG 0.507572 7.4:-41578476 MS.gene055265:CDS
AACAAGGTATTGTATGCTCA+AGG 0.515072 7.4:-41578872 MS.gene055265:CDS
AGTTGTCACTCTTGGCATCA+AGG 0.517260 7.4:-41578342 MS.gene055265:CDS
GGAATTGTTCGAATATTTGG+TGG 0.517282 7.4:-41578797 MS.gene055265:CDS
TAGGAACATGTGAAGTACTT+TGG 0.517369 7.4:+41579413 None:intergenic
AGATAAACCTTGATCTCTCA+AGG 0.517631 7.4:+41578960 None:intergenic
CATCATCGGATGCTAAGAAC+AGG 0.519251 7.4:-41578703 MS.gene055265:CDS
TCTGTAGCAAAATACATAGC+TGG 0.536774 7.4:+41578452 None:intergenic
TGTTCCTTGGGAAGCATCAA+GGG 0.538972 7.4:-41578770 MS.gene055265:CDS
CTTGTTTGCAGAAGCAGGGA+AGG 0.539743 7.4:-41579681 MS.gene055265:CDS
GTGAGCCAAACCATTTGTTA+GGG 0.543465 7.4:+41578168 None:intergenic
GAATTGTTCGAATATTTGGT+GGG 0.543684 7.4:-41578796 MS.gene055265:CDS
TTTCTTACATATCCTTTGGG+TGG 0.551503 7.4:-41578818 MS.gene055265:CDS
AACCTTGATCTCTCAAGGGA+TGG 0.552278 7.4:+41578965 None:intergenic
AGAAGCAGGGAAGGACTTTG+TGG 0.556414 7.4:-41579672 MS.gene055265:CDS
CTTGTTAACTGAAGTTAAGG+AGG 0.561757 7.4:-41578146 MS.gene055265:CDS
AAACCAATATTTGACATCAT+CGG 0.567419 7.4:-41578717 MS.gene055265:CDS
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7.4:-41579685 MS.gene055265:CDS
TGTAACTGTGGGGCAATGCA+AGG 0.575144 7.4:+41578671 None:intergenic
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.4:-41579612 MS.gene055265:CDS
CCATAATATACAAGAACACC+AGG 0.581295 7.4:+41578617 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7.4:-41579598 MS.gene055265:CDS
AGCATAGGGCAAGTTACAGT+CGG 0.590026 7.4:-41579584 MS.gene055265:CDS
GCTTGCTTAACTGTAACTGT+GGG 0.590306 7.4:+41578660 None:intergenic
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7.4:-41579599 MS.gene055265:CDS
TCTTGGTGATGGTTATGTCA+AGG 0.594179 7.4:-41578477 MS.gene055265:CDS
TGAAGGTTGTTTCTCTACTG+AGG 0.594448 7.4:-41579522 MS.gene055265:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.4:+41579613 None:intergenic
GATAAATATAAATGTCAATG+TGG 0.600217 7.4:-41579344 MS.gene055265:CDS
TTATATTTATCTTTATACGT+TGG 0.605271 7.4:+41579356 None:intergenic
TGGTGTGATCATATCGCGAT+AGG 0.608401 7.4:+41579376 None:intergenic
AATGTGATGATTCTTGGTGA+TGG 0.622784 7.4:-41578488 MS.gene055265:CDS
CAATCCCTTGATGCTTCCCA+AGG 0.623539 7.4:+41578766 None:intergenic
GATAAACCTTGATCTCTCAA+GGG 0.630404 7.4:+41578961 None:intergenic
TATAAGAAAATCAGATAACA+AGG 0.631180 7.4:-41578888 MS.gene055265:CDS
ATTCGAACAATTCCACCCAA+AGG 0.640069 7.4:+41578806 None:intergenic
ACAAGGTATTGTATGCTCAA+GGG 0.641517 7.4:-41578871 MS.gene055265:CDS
TATTACTTCTACTCAAGCAG+AGG 0.660221 7.4:-41579750 MS.gene055265:CDS
AAACTCACTCTATAGAAGTG+TGG 0.661607 7.4:-41579555 MS.gene055265:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.672765 7.4:-41579539 MS.gene055265:CDS
GAACATGTGAAGTACTTTGG+TGG 0.674394 7.4:+41579416 None:intergenic
AGGTTTAAGGAAAACTGGAA+CGG 0.680550 7.4:+41579310 None:intergenic
TACCGTTAACAAATCCTTGG+GGG 0.682251 7.4:+41579285 None:intergenic
ATACCGTTAACAAATCCTTG+GGG 0.683086 7.4:+41579284 None:intergenic
TGTCACTCTTGGCATCAAGG+AGG 0.739488 7.4:-41578339 MS.gene055265:intron
GCTGCAACCAATCAACTCAG+CGG 0.749919 7.4:-41579483 MS.gene055265:CDS
CTTGCTTAACTGTAACTGTG+GGG 0.751008 7.4:+41578661 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCAAATATAAATTTTACTA+TGG + chr7.4:41579587-41579606 None:intergenic 10.0%
!! TTATATTTATCTTTATACGT+TGG + chr7.4:41578543-41578562 None:intergenic 15.0%
!! GAATAGAATATTGTTATGTT+CGG - chr7.4:41579361-41579380 MS.gene055265:CDS 20.0%
!! GATAAATATAAATGTCAATG+TGG - chr7.4:41578552-41578571 MS.gene055265:CDS 20.0%
!! TATAAGAAAATCAGATAACA+AGG - chr7.4:41579008-41579027 MS.gene055265:CDS 20.0%
!!! CATTTACAAATTTTCAAATC+TGG - chr7.4:41579339-41579358 MS.gene055265:CDS 20.0%
!!! TTTTCCTTCAAATCATTAAT+CGG + chr7.4:41579534-41579553 None:intergenic 20.0%
! AAACCAATATTTGACATCAT+CGG - chr7.4:41579179-41579198 MS.gene055265:CDS 25.0%
! ATAGGAGCAAAAATTAAAGT+AGG + chr7.4:41578505-41578524 None:intergenic 25.0%
! ATATTGTTATGTTCGGAATT+TGG - chr7.4:41579368-41579387 MS.gene055265:CDS 25.0%
! TTATCTAATGTGATGATTCT+TGG - chr7.4:41579402-41579421 MS.gene055265:CDS 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.4:41578183-41578202 MS.gene055265:CDS 25.0%
!! AAGTTTTCTTACATATCCTT+TGG - chr7.4:41579074-41579093 MS.gene055265:intron 25.0%
!! AGTTTTCTTACATATCCTTT+GGG - chr7.4:41579075-41579094 MS.gene055265:intron 25.0%
!!! TAACTAGCTTTAGATTGATT+TGG + chr7.4:41578990-41579009 None:intergenic 25.0%
ATATTACCAATTCTTGATCC+TGG - chr7.4:41579261-41579280 MS.gene055265:CDS 30.0%
CTTGTATAGTCAATACAGTT+TGG + chr7.4:41578675-41578694 None:intergenic 30.0%
GAATTGTTCGAATATTTGGT+GGG - chr7.4:41579100-41579119 MS.gene055265:intron 30.0%
TACTCCGATTAATGATTTGA+AGG - chr7.4:41579527-41579546 MS.gene055265:CDS 30.0%
TATACCGTTAACAAATCCTT+GGG + chr7.4:41578616-41578635 None:intergenic 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.4:41578181-41578200 None:intergenic 30.0%
TTGTGTGATGTTGAAATTAG+TGG - chr7.4:41578958-41578977 MS.gene055265:CDS 30.0%
! AGCTTTTTAACAATGCCATT+AGG - chr7.4:41578258-41578277 MS.gene055265:intron 30.0%
! CAAACACAAAACCTTTTCTT+TGG + chr7.4:41578766-41578785 None:intergenic 30.0%
! CATTAATCGGAGTATTCAAT+CGG + chr7.4:41579521-41579540 None:intergenic 30.0%
! GTACAAGAGTATAGTTGATT+TGG - chr7.4:41579152-41579171 MS.gene055265:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7.4:41579452-41579471 MS.gene055265:CDS 30.0%
! TCACTTGTTAACTGAAGTTA+AGG - chr7.4:41579747-41579766 MS.gene055265:CDS 30.0%
!! TGTATTGACTATACAAGCTT+TGG - chr7.4:41578678-41578697 MS.gene055265:CDS 30.0%
AAACTCACTCTATAGAAGTG+TGG - chr7.4:41578341-41578360 MS.gene055265:CDS 35.0%
AAAGCTGAAATTGGAGTTAG+TGG + chr7.4:41579486-41579505 None:intergenic 35.0%
AAGGAAAAAGTTGTCACTCT+TGG - chr7.4:41579546-41579565 MS.gene055265:CDS 35.0%
AATGTGATGATTCTTGGTGA+TGG - chr7.4:41579408-41579427 MS.gene055265:CDS 35.0%
ACTAACTCCAATTTCAGCTT+TGG - chr7.4:41579485-41579504 MS.gene055265:CDS 35.0%
AGATAAACCTTGATCTCTCA+AGG + chr7.4:41578939-41578958 None:intergenic 35.0%
AGGTTTAAGGAAAACTGGAA+CGG + chr7.4:41578589-41578608 None:intergenic 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.4:41579495-41579514 None:intergenic 35.0%
ATACCGTTAACAAATCCTTG+GGG + chr7.4:41578615-41578634 None:intergenic 35.0%
CATCCGATGATGTCAAATAT+TGG + chr7.4:41579185-41579204 None:intergenic 35.0%
CCATAATATACAAGAACACC+AGG + chr7.4:41579282-41579301 None:intergenic 35.0%
CCTGGTGTTCTTGTATATTA+TGG - chr7.4:41579279-41579298 MS.gene055265:CDS 35.0%
CTAACTCCAATTTCAGCTTT+GGG - chr7.4:41579486-41579505 MS.gene055265:CDS 35.0%
CTATACCGTTAACAAATCCT+TGG + chr7.4:41578617-41578636 None:intergenic 35.0%
CTTGTTAACTGAAGTTAAGG+AGG - chr7.4:41579750-41579769 MS.gene055265:CDS 35.0%
GATAAACCTTGATCTCTCAA+GGG + chr7.4:41578938-41578957 None:intergenic 35.0%
GGAATTGTTCGAATATTTGG+TGG - chr7.4:41579099-41579118 MS.gene055265:intron 35.0%
GGTGGAATTGTTCGAATATT+TGG - chr7.4:41579096-41579115 MS.gene055265:intron 35.0%
GTAGTGTCTTAGCATATTGA+AGG - chr7.4:41579684-41579703 MS.gene055265:CDS 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7.4:41578298-41578317 MS.gene055265:intron 35.0%
TATTACTTCTACTCAAGCAG+AGG - chr7.4:41578146-41578165 MS.gene055265:CDS 35.0%
TCTGAATGTCACCAAAGAAA+AGG - chr7.4:41578752-41578771 MS.gene055265:CDS 35.0%
TCTGTAGCAAAATACATAGC+TGG + chr7.4:41579447-41579466 None:intergenic 35.0%
TGGCATAAAAAACCCTAGTT+CGG - chr7.4:41578716-41578735 MS.gene055265:CDS 35.0%
TTTCTTACATATCCTTTGGG+TGG - chr7.4:41579078-41579097 MS.gene055265:intron 35.0%
! ACCAATTCTTTTACCGAACT+AGG + chr7.4:41578732-41578751 None:intergenic 35.0%
! CCAATTCTTTTACCGAACTA+GGG + chr7.4:41578731-41578750 None:intergenic 35.0%
! TAGGAACATGTGAAGTACTT+TGG + chr7.4:41578486-41578505 None:intergenic 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7.4:41579024-41579043 MS.gene055265:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7.4:41579025-41579044 MS.gene055265:CDS 35.0%
AATCTCGCAATGGTTCCTAA+TGG + chr7.4:41578276-41578295 None:intergenic 40.0%
AGAACACCAGGATCAAGAAT+TGG + chr7.4:41579270-41579289 None:intergenic 40.0%
AGTGAGCCAAACCATTTGTT+AGG + chr7.4:41579732-41579751 None:intergenic 40.0%
ATTAGGAACCATTGCGAGAT+TGG - chr7.4:41578275-41578294 MS.gene055265:intron 40.0%
ATTCGAACAATTCCACCCAA+AGG + chr7.4:41579093-41579112 None:intergenic 40.0%
CCCTAGTTCGGTAAAAGAAT+TGG - chr7.4:41578728-41578747 MS.gene055265:CDS 40.0%
CTTGCTTAACTGTAACTGTG+GGG + chr7.4:41579238-41579257 None:intergenic 40.0%
GCTTGCTTAACTGTAACTGT+GGG + chr7.4:41579239-41579258 None:intergenic 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7.4:41578297-41578316 MS.gene055265:intron 40.0%
TACCGTTAACAAATCCTTGG+GGG + chr7.4:41578614-41578633 None:intergenic 40.0%
TCAACTTCTGCCCTAACAAA+TGG - chr7.4:41579718-41579737 MS.gene055265:CDS 40.0%
TGCTTGCTTAACTGTAACTG+TGG + chr7.4:41579240-41579259 None:intergenic 40.0%
TTCTGCCCTAACAAATGGTT+TGG - chr7.4:41579723-41579742 MS.gene055265:CDS 40.0%
TTTGGTGGGAATTGTTCCTT+GGG - chr7.4:41579114-41579133 MS.gene055265:intron 40.0%
! ATTTGGTGGGAATTGTTCCT+TGG - chr7.4:41579113-41579132 MS.gene055265:intron 40.0%
! GAACATGTGAAGTACTTTGG+TGG + chr7.4:41578483-41578502 None:intergenic 40.0%
! GTGAGCCAAACCATTTGTTA+GGG + chr7.4:41579731-41579750 None:intergenic 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.4:41578210-41578229 MS.gene055265:CDS 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG - chr7.4:41578211-41578230 MS.gene055265:CDS 40.0%
!! CTTGGTGATGGTTATGTCAA+GGG - chr7.4:41579420-41579439 MS.gene055265:CDS 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG + chr7.4:41578423-41578442 None:intergenic 40.0%
!! TCTTGGTGATGGTTATGTCA+AGG - chr7.4:41579419-41579438 MS.gene055265:CDS 40.0%
!! TGAAGGTTGTTTCTCTACTG+AGG - chr7.4:41578374-41578393 MS.gene055265:CDS 40.0%
!!! GGTTTTTTATGCCAAACTCC+AGG + chr7.4:41578710-41578729 None:intergenic 40.0%
AACCATCCCTTGAGAGATCA+AGG - chr7.4:41578929-41578948 MS.gene055265:CDS 45.0%
AACCTTGATCTCTCAAGGGA+TGG + chr7.4:41578934-41578953 None:intergenic 45.0%
AGCATAGGGCAAGTTACAGT+CGG - chr7.4:41578312-41578331 MS.gene055265:intron 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7.4:41578357-41578376 MS.gene055265:CDS 45.0%
AGTTGTCACTCTTGGCATCA+AGG - chr7.4:41579554-41579573 MS.gene055265:CDS 45.0%
CATCATCGGATGCTAAGAAC+AGG - chr7.4:41579193-41579212 MS.gene055265:CDS 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.4:41578284-41578303 MS.gene055265:intron 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.4:41578286-41578305 None:intergenic 45.0%
GGGAGAGGTTTAAGGAAAAC+TGG + chr7.4:41578594-41578613 None:intergenic 45.0%
TGGTGTGATCATATCGCGAT+AGG + chr7.4:41578523-41578542 None:intergenic 45.0%
TTAACAAATCCTTGGGGGAG+AGG + chr7.4:41578609-41578628 None:intergenic 45.0%
TTTGGTCTGTTCCTGGAGTT+TGG - chr7.4:41578696-41578715 MS.gene055265:CDS 45.0%
! TACAAGCTTTGGTCTGTTCC+TGG - chr7.4:41578689-41578708 MS.gene055265:CDS 45.0%
!! CTCCCCCAAGGATTTGTTAA+CGG - chr7.4:41578609-41578628 MS.gene055265:CDS 45.0%
!! TGTTCCTTGGGAAGCATCAA+GGG - chr7.4:41579126-41579145 MS.gene055265:intron 45.0%
!! TTGTTCCTTGGGAAGCATCA+AGG - chr7.4:41579125-41579144 MS.gene055265:intron 45.0%
!! ATAGTAAAATATTTAAATAA+TGG + chr7.4:41579621-41579640 None:intergenic 5.0%
!! TAGTAAAATATTTAAATAAT+GGG + chr7.4:41579620-41579639 None:intergenic 5.0%
!!! TATTACTATTTTATATATAT+AGG - chr7.4:41578840-41578859 MS.gene055265:CDS 5.0%
AGAAGCAGGGAAGGACTTTG+TGG - chr7.4:41578224-41578243 MS.gene055265:intron 50.0%
ATCCTTGGGGGAGAGGTTTA+AGG + chr7.4:41578602-41578621 None:intergenic 50.0%
CAATCCCTTGATGCTTCCCA+AGG + chr7.4:41579133-41579152 None:intergenic 50.0%
CTTGTTTGCAGAAGCAGGGA+AGG - chr7.4:41578215-41578234 MS.gene055265:intron 50.0%
GCTGCAACCAATCAACTCAG+CGG - chr7.4:41578413-41578432 MS.gene055265:CDS 50.0%
TGTAACTGTGGGGCAATGCA+AGG + chr7.4:41579228-41579247 None:intergenic 50.0%
TGTCACTCTTGGCATCAAGG+AGG - chr7.4:41579557-41579576 MS.gene055265:CDS 50.0%
TTCCTTAAACCTCTCCCCCA+AGG - chr7.4:41578597-41578616 MS.gene055265:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 41578138 41579780 41578138 ID=MS.gene055265
chr7.4 mRNA 41578138 41579780 41578138 ID=MS.gene055265.t1;Parent=MS.gene055265
chr7.4 exon 41579145 41579780 41579145 ID=MS.gene055265.t1.exon1;Parent=MS.gene055265.t1
chr7.4 CDS 41579145 41579780 41579145 ID=cds.MS.gene055265.t1;Parent=MS.gene055265.t1
chr7.4 exon 41578340 41579056 41578340 ID=MS.gene055265.t1.exon2;Parent=MS.gene055265.t1
chr7.4 CDS 41578340 41579056 41578340 ID=cds.MS.gene055265.t1;Parent=MS.gene055265.t1
chr7.4 exon 41578138 41578230 41578138 ID=MS.gene055265.t1.exon3;Parent=MS.gene055265.t1
chr7.4 CDS 41578138 41578230 41578138 ID=cds.MS.gene055265.t1;Parent=MS.gene055265.t1
Gene Sequence

>MS.gene055265

ATGGCTGCTATTACTTCTACTCAAGCAGAGGAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTGGATATTCTCTGTAGCTTTTTAACAATGCCATTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAGAAGTGTGGCAGATCTTGATGAAGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATTGCGACACTCTTAAACTCAACATTGATGACAATCAACCACCAAAGTACTTCACATGTTCCTACTTTAATTTTTGCTCCTATCGCGATATGATCACACCAACGTATAAAGATAAATATAAATGTCAATGTGGTAGTTCTTTTACCGTTCCAGTTTTCCTTAAACCTCTCCCCCAAGGATTTGTTAACGGTATAGCTACATATGTCATAACTGATGATCTGTTTGTCATGCCAAACTGTATTGACTATACAAGCTTTGGTCTGTTCCTGGAGTTTGGCATAAAAAACCCTAGTTCGGTAAAAGAATTGGTTCTGAATGTCACCAAAGAAAAGGTTTTGTGTTTGAATATTGCGTTTGTTTATAACTTCTCTCTAATTTTTTTGATTGATTATAACTACTATTACTATTTTATATATATAGGTACTTGATCTGCTAAAGTGTTCTTTGCTTTCGAAGTCAACTTTGACAAATTTGTTTCTAGAGAAGAAACCATCCCTTGAGAGATCAAGGTTTATCTTGTGTGATGTTGAAATTAGTGGCAATATCCAAATCAATCTAAAGCTAGTTATAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGCAGCAAGATTTTGCAAACTTACTTTTAAGTTTTCTTACATATCCTTTGGGTGGAATTGTTCGAATATTTGGTGGGAATTGTTCCTTGGGAAGCATCAAGGGATTGTACAAGAGTATAGTTGATTTGGATGAAAACCAATATTTGACATCATCGGATGCTAAGAACAGGCTTGTTGATCCTTGCATTGCCCCACAGTTACAGTTAAGCAAGCAGATATTACCAATTCTTGATCCTGGTGTTCTTGTATATTATGGTGATGTTAAAAGTTCTGCTAACAGTAATAATATTATTCATTTACAAATTTTCAAATCTGGAATAGAATATTGTTATGTTCGGAATTTGGAGAAACTGAATTTATCTAATGTGATGATTCTTGGTGATGGTTATGTCAAGGGTCCAGCTATGTATTTTGCTACAGATGATTTGGTTGTAGCACCACTAACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTGAATACTCCGATTAATGATTTGAAGGAAAAAGTTGTCACTCTTGGCATCAAGGAGGTAAACCATAGTAAAATTTATATTTGATTTTTAATTTTCCCATTATTTAAATATTTTACTATGAGATAATTTCTCGATTGCTTATGTTTCACTTTTTGTCTTGTTGTAGTGTCTTAGCATATTGAAGGCTGCTTTGACTTCAACTTCTGCCCTAACAAATGGTTTGGCTCACTTGTTAACTGAAGTTAAGGAGGAGAAATGA
Protein sequence

>MS.gene055265.t1

MAAITSTQAEEHVSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQVTVGCLNSLYRSVADLDEGCFSTEAIKQMLLQPINSAEDYCDTLKLNIDDNQPPKYFTCSYFNFCSYRDMITPTYKDKYKCQCGSSFTVPVFLKPLPQGFVNGIATYVITDDLFVMPNCIDYTSFGLFLEFGIKNPSSVKELVLNVTKEKVLDLLKCSLLSKSTLTNLFLEKKPSLERSRFILCDVEISGNIQINLKLVIRKSDNKVLYAQGQQDFANLLLSFLTYPLGGIVRIFGGNCSLGSIKGLYKSIVDLDENQYLTSSDAKNRLVDPCIAPQLQLSKQILPILDPGVLVYYGDVKSSANSNNIIHLQIFKSGIEYCYVRNLEKLNLSNVMILGDGYVKGPAMYFATDDLVVAPLTPISALGLLNRLNTPINDLKEKVVTLGIKECLSILKAALTSTSALTNGLAHLLTEVKEEK