AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94753

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94753.t1 MTR_7g066410 79.537 518 88 2 1 502 1 516 0.0 825
MS.gene94753.t1 MTR_7g066430 54.694 490 211 6 11 498 5 485 2.16e-173 498
MS.gene94753.t1 MTR_7g066430 29.167 240 137 8 268 492 4 225 2.74e-12 69.3
MS.gene94753.t1 MTR_7g066570 46.465 495 231 11 10 498 14 480 4.09e-133 397
MS.gene94753.t1 MTR_7g058710 46.138 492 236 10 11 499 13 478 9.57e-129 383
MS.gene94753.t1 MTR_7g058710 28.319 226 146 5 268 492 12 222 1.72e-16 82.4
MS.gene94753.t1 MTR_7g066260 42.886 492 234 10 10 498 15 462 8.71e-117 353
MS.gene94753.t1 MTR_7g066340 43.750 496 216 13 11 498 13 453 3.94e-116 350
MS.gene94753.t1 MTR_7g066340 29.461 241 134 6 268 492 12 232 3.06e-20 94.0
MS.gene94753.t1 MTR_7g012680 43.673 490 215 10 11 498 15 445 1.26e-115 348
MS.gene94753.t1 MTR_7g012680 26.293 232 130 6 268 492 14 211 9.11e-14 73.6
MS.gene94753.t1 MTR_7g063900 43.452 504 259 6 1 499 1 483 9.95e-111 337
MS.gene94753.t1 MTR_7g062280 39.335 511 261 10 8 500 8 487 5.61e-107 328
MS.gene94753.t1 MTR_7g066580 42.041 490 226 12 17 498 2 441 6.15e-107 326
MS.gene94753.t1 MTR_1g041315 39.256 484 237 7 10 482 14 451 1.45e-103 319
MS.gene94753.t1 MTR_1g041315 25.714 245 147 9 268 492 14 243 3.24e-11 65.9
MS.gene94753.t1 MTR_7g066350 40.657 487 237 8 11 495 10 446 4.62e-103 317
MS.gene94753.t1 MTR_7g066350 32.627 236 131 8 268 492 9 227 8.75e-20 92.4
MS.gene94753.t1 MTR_7g063660 39.608 510 259 14 1 499 1 472 1.75e-102 316
MS.gene94753.t1 MTR_7g066480 52.035 344 143 9 10 347 16 343 5.19e-101 310
MS.gene94753.t1 MTR_7g066480 56.842 95 39 1 407 499 328 422 2.48e-24 105
MS.gene94753.t1 MTR_7g062300 37.876 499 261 11 8 495 10 470 1.82e-98 305
MS.gene94753.t1 MTR_7g066490 50.737 339 141 7 10 347 16 329 2.60e-97 300
MS.gene94753.t1 MTR_7g066490 56.842 95 39 1 407 499 314 408 3.58e-24 105
MS.gene94753.t1 MTR_7g066490 27.391 230 133 7 268 492 16 216 9.00e-12 67.4
MS.gene94753.t1 MTR_7g063840 37.897 504 264 11 6 500 6 469 9.08e-96 298
MS.gene94753.t1 MTR_7g063840 27.731 238 146 8 263 492 5 224 2.39e-11 66.2
MS.gene94753.t1 MTR_7g066360 41.584 505 228 15 2 498 4 449 6.76e-94 293
MS.gene94753.t1 MTR_7g063880 38.583 508 248 17 6 500 8 464 1.36e-93 292
MS.gene94753.t1 MTR_7g063820 38.986 513 267 14 1 500 1 480 3.32e-93 292
MS.gene94753.t1 MTR_7g066400 37.917 509 227 14 1 495 1 434 7.16e-91 285
MS.gene94753.t1 MTR_7g066310 37.525 493 188 11 10 498 7 383 2.76e-89 279
MS.gene94753.t1 MTR_7g063890 39.800 500 268 9 8 499 25 499 4.48e-89 282
MS.gene94753.t1 MTR_7g063890 27.347 245 141 6 262 492 21 242 3.91e-19 90.5
MS.gene94753.t1 MTR_3g007740 37.876 499 251 10 3 499 2 443 2.83e-88 278
MS.gene94753.t1 MTR_7g066290 44.290 359 180 8 11 362 16 361 5.25e-85 269
MS.gene94753.t1 MTR_7g066290 50.000 76 34 1 423 498 362 433 6.67e-13 70.9
MS.gene94753.t1 MTR_7g066290 24.561 228 154 5 258 477 3 220 2.16e-12 69.3
MS.gene94753.t1 MTR_4g019310 37.037 513 279 15 7 500 5 492 1.05e-84 270
MS.gene94753.t1 MTR_7g063920 35.644 505 247 10 1 500 1 432 2.04e-84 268
MS.gene94753.t1 MTR_7g063830 41.624 394 188 12 1 378 1 368 4.28e-84 267
MS.gene94753.t1 MTR_7g063830 24.783 230 153 5 269 492 11 226 3.98e-11 65.5
MS.gene94753.t1 MTR_7g063670 38.755 498 245 11 7 500 12 453 1.33e-82 263
MS.gene94753.t1 MTR_7g058700 37.728 493 191 8 22 499 531 922 7.12e-81 270
MS.gene94753.t1 MTR_4g017830 35.893 521 291 18 1 498 1 501 2.16e-75 247
MS.gene94753.t1 MTR_3g065200 34.927 481 231 12 10 484 3 407 4.61e-73 239
MS.gene94753.t1 MTR_2g029400 34.801 477 224 9 11 487 15 404 2.19e-70 230
MS.gene94753.t1 MTR_4g017410 35.057 522 268 18 7 499 6 485 3.72e-70 233
MS.gene94753.t1 MTR_4g017410 24.219 256 156 6 260 492 1 241 9.16e-11 64.7
MS.gene94753.t1 MTR_4g017550 36.183 503 260 19 24 497 3 473 7.11e-70 231
MS.gene94753.t1 MTR_4g019340 34.257 505 281 13 1 486 29 501 2.55e-69 230
MS.gene94753.t1 MTR_4g019340 28.629 248 149 7 266 494 36 274 2.56e-11 66.2
MS.gene94753.t1 MTR_4g017610 33.066 499 272 16 17 495 20 476 1.41e-64 217
MS.gene94753.t1 MTR_4g017440 33.661 508 297 14 11 498 15 502 9.95e-63 213
MS.gene94753.t1 MTR_4g017470 32.812 512 268 11 11 499 13 471 2.76e-62 211
MS.gene94753.t1 MTR_1g014060 51.364 220 93 6 19 234 9 218 6.19e-62 207
MS.gene94753.t1 MTR_1g014060 40.594 202 92 3 298 498 210 384 7.28e-33 129
MS.gene94753.t1 MTR_1g014060 26.316 209 135 5 282 484 14 209 4.00e-13 71.2
MS.gene94753.t1 MTR_7g066280 34.562 434 216 16 89 498 1 390 6.30e-60 203
MS.gene94753.t1 MTR_7g066680 39.103 312 143 7 216 494 37 334 1.62e-48 171
MS.gene94753.t1 MTR_7g063720 38.819 237 118 4 264 500 19 228 2.15e-43 154
MS.gene94753.t1 MTR_7g063720 27.413 259 128 10 6 248 19 233 9.27e-15 74.3
MS.gene94753.t1 MTR_7g062270 39.196 199 112 3 1 198 1 191 3.27e-37 141
MS.gene94753.t1 MTR_8g023240 26.844 488 302 16 15 492 41 483 2.01e-33 134
MS.gene94753.t1 MTR_7g100420 35.714 280 159 6 216 494 134 393 8.17e-32 126
MS.gene94753.t1 MTR_7g063850 31.250 304 164 9 204 500 19 284 6.49e-30 119
MS.gene94753.t1 MTR_7g063690 29.966 297 129 10 1 295 3 222 4.27e-22 95.5
MS.gene94753.t1 MTR_2g067310 37.195 164 58 4 21 184 58 176 5.57e-21 92.4
MS.gene94753.t1 MTR_1g115440 30.435 230 154 4 264 491 7 232 6.35e-20 89.4
MS.gene94753.t1 MTR_1g115440 30.328 244 143 9 10 240 11 240 4.58e-19 87.0
MS.gene94753.t1 MTR_4g019240 42.727 110 53 3 11 112 14 121 1.27e-18 84.0
MS.gene94753.t1 MTR_8g445860 30.000 240 140 7 11 238 14 237 2.18e-18 84.7
MS.gene94753.t1 MTR_0150s0010 28.287 251 157 9 1 240 1 239 1.99e-16 79.3
MS.gene94753.t1 MTR_0150s0010 29.317 249 147 7 264 500 6 237 1.34e-15 76.6
MS.gene94753.t1 MTR_7g066390 47.945 73 38 0 426 498 50 122 1.68e-13 68.6
MS.gene94753.t1 MTR_1g115455 27.347 245 139 7 11 238 10 232 5.77e-12 65.9
MS.gene94753.t1 MTR_1g115450 39.286 84 46 1 11 94 8 86 7.51e-12 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94753.t1 AT3G09140 32.571 525 290 16 6 500 5 495 1.04e-63 215
MS.gene94753.t1 AT5G01120 33.266 496 299 12 11 494 10 485 1.53e-63 215
MS.gene94753.t1 AT3G09140 30.978 552 291 17 6 500 5 523 5.75e-59 203
MS.gene94753.t1 AT5G43240 32.500 520 294 14 1 494 1 489 3.50e-58 201
MS.gene94753.t1 AT5G43240 32.500 520 294 14 1 494 1 489 3.50e-58 201
MS.gene94753.t1 AT5G43240 32.500 520 294 14 1 494 1 489 3.50e-58 201
MS.gene94753.t1 AT3G09110 37.224 317 187 4 11 326 10 315 8.92e-58 195
MS.gene94753.t1 AT5G01130 30.616 503 280 11 6 500 5 446 2.49e-56 194
MS.gene94753.t1 AT5G01140 29.389 507 294 11 3 500 2 453 2.85e-56 195
MS.gene94753.t1 AT5G01150 30.375 507 317 12 3 500 2 481 1.07e-54 191
MS.gene94753.t1 AT5G37320 30.137 511 297 15 11 500 10 481 7.80e-47 170
MS.gene94753.t1 AT3G09120 33.127 323 201 6 5 322 1 313 1.97e-45 162
MS.gene94753.t1 AT3G09120 29.218 243 156 7 264 500 2 234 2.38e-13 71.2
MS.gene94753.t1 AT5G43240 28.529 340 200 10 172 494 32 345 5.01e-18 86.3

Find 88 sgRNAs with CRISPR-Local

Find 129 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCTATTAATTTGAAATATT+TGG 0.121906 7.1:-35571603 MS.gene94753:CDS
CTCAAGAATACATCTGTTAA+AGG 0.199474 7.1:+35572121 None:intergenic
CAACTTTCTGGAAGATTTAC+AGG 0.204929 7.1:+35572680 None:intergenic
GCATCCAAATCACAACTTTC+TGG 0.212105 7.1:+35572668 None:intergenic
ACAATCTTATTACCTCATTT+TGG 0.213174 7.1:+35571393 None:intergenic
CCCATCAATTCATTTGATTC+TGG 0.249299 7.1:-35572064 MS.gene94753:CDS
ATACAAGAGTGTTCTTGTTT+TGG 0.271189 7.1:-35571843 MS.gene94753:CDS
TTGGAGCCACAGTCATTTAC+TGG 0.287572 7.1:-35571584 MS.gene94753:CDS
TCTTCCAGAAAGTTGTGATT+TGG 0.292859 7.1:-35572672 MS.gene94753:CDS
TTTAAGATCCACTAATTTGA+TGG 0.293278 7.1:-35571807 MS.gene94753:CDS
GGGCATTGTTGAGTACTTTC+AGG 0.295900 7.1:-35572871 MS.gene94753:CDS
AAGCTTCTTAACTTTGCCTT+TGG 0.297469 7.1:-35573143 MS.gene94753:CDS
TAAAGGTGTCATTGAAAATA+AGG 0.309165 7.1:+35572138 None:intergenic
CATGTAGACCGATGGCTTCT+TGG 0.315628 7.1:+35571526 None:intergenic
ACCTTGATGAAAAGCAATTC+TGG 0.320092 7.1:-35573033 MS.gene94753:CDS
TGAAATATCTCTCGATTCAT+TGG 0.324258 7.1:+35572824 None:intergenic
CAACTTAGTCAGAACGGTTA+TGG 0.325901 7.1:+35571460 None:intergenic
TGTATTCTTGAGAAAGAGTT+TGG 0.335713 7.1:-35572110 MS.gene94753:CDS
GATAGTAAGAAAGACATATT+TGG 0.339430 7.1:-35571692 MS.gene94753:CDS
AGCTTCTTAACTTTGCCTTT+GGG 0.341820 7.1:-35573142 MS.gene94753:CDS
TAACACAGTATTGTTTGCTT+TGG 0.344746 7.1:-35571972 MS.gene94753:CDS
CAGGACTGCAGTCGTAAATC+AGG 0.357573 7.1:-35572893 MS.gene94753:CDS
AATTCATTTGATTCTGGTAC+TGG 0.366558 7.1:-35572058 MS.gene94753:CDS
AACACAGTATTGTTTGCTTT+GGG 0.375909 7.1:-35571971 MS.gene94753:CDS
TCATCATCTGCTCTGACTAA+TGG 0.390864 7.1:-35571234 MS.gene94753:CDS
ACCAGAATCAAATGAATTGA+TGG 0.396407 7.1:+35572063 None:intergenic
ATAGTCCCATTACAAGTATC+AGG 0.397272 7.1:+35572710 None:intergenic
AAAGCAGAAGCTTCATCAAT+AGG 0.404679 7.1:+35571728 None:intergenic
ATGTCAGCAAACTAACAATA+AGG 0.405593 7.1:+35571930 None:intergenic
AAGCTTATCCATCAAATTAG+TGG 0.409760 7.1:+35571799 None:intergenic
CTGATTTACGACTGCAGTCC+TGG 0.414884 7.1:+35572894 None:intergenic
AGCAGCATTTCTTTACAAAC+AGG 0.415903 7.1:+35573007 None:intergenic
TATTCTTCCATCGTGTTCCT+TGG 0.425877 7.1:+35572980 None:intergenic
AAACAAGAACACTCTTGTAT+AGG 0.434138 7.1:+35571846 None:intergenic
TAAATCCTGATACTTGTAAT+GGG 0.436109 7.1:-35572715 MS.gene94753:CDS
GGTGTGGAACACATGTTAAA+AGG 0.439762 7.1:-35571896 MS.gene94753:CDS
ATAATGAAAGATGCTGTCTC+TGG 0.443112 7.1:+35572755 None:intergenic
ACATGTGTTCCACACCTCCT+AGG 0.451836 7.1:+35571903 None:intergenic
CGATGTTAAGCTTCATATGT+TGG 0.463924 7.1:+35572954 None:intergenic
TGCCTTTGGGCACGATTGCA+AGG 0.464081 7.1:-35573129 MS.gene94753:CDS
AGAGTTTGGTTACTGAGAAT+AGG 0.465762 7.1:-35572096 MS.gene94753:CDS
CTTCATCAATAGGTAACATC+TGG 0.473225 7.1:+35571738 None:intergenic
GCAAGCAGGGAAATACTTCA+TGG 0.473232 7.1:-35573176 MS.gene94753:CDS
CATGTGTTCCACACCTCCTA+GGG 0.491021 7.1:+35571904 None:intergenic
CAAGAAGCCATCGGTCTACA+TGG 0.493484 7.1:-35571525 MS.gene94753:CDS
GATGGAAATGTTGATTATGA+TGG 0.498430 7.1:-35572785 MS.gene94753:CDS
GGTGAAGCATATAACACATA+TGG 0.501720 7.1:-35571563 MS.gene94753:CDS
GTAAATCCTGATACTTGTAA+TGG 0.501768 7.1:-35572716 MS.gene94753:CDS
TTAAAAGGAAACTCTAACAT+GGG 0.502331 7.1:-35571881 MS.gene94753:CDS
AAAAGAACTACTACTAACTT+CGG 0.508639 7.1:+35571628 None:intergenic
TTTGGGTGGAGAGGACTTTG+CGG 0.513269 7.1:-35571954 MS.gene94753:CDS
AATTCCTCTCTCTGATGTGA+TGG 0.523148 7.1:-35571435 MS.gene94753:CDS
ATTGTTTGCTTTGGGTGGAG+AGG 0.524615 7.1:-35571963 MS.gene94753:CDS
ACAGTATTGTTTGCTTTGGG+TGG 0.540895 7.1:-35571968 MS.gene94753:CDS
ATGGAAATGTTGATTATGAT+GGG 0.542018 7.1:-35572784 MS.gene94753:CDS
TGTAAATGTCACTCGGAAAG+AGG 0.549957 7.1:-35572630 MS.gene94753:intron
TATAACACATATGGTGGCAG+AGG 0.556754 7.1:-35571554 MS.gene94753:CDS
CCAGAATCAAATGAATTGAT+GGG 0.566985 7.1:+35572064 None:intergenic
AAGAAATGCTGCTTCGACCA+AGG 0.572850 7.1:-35572997 MS.gene94753:CDS
TGTTTAGTGTCTTCAAGAGG+AGG 0.573911 7.1:-35571656 MS.gene94753:CDS
GATCAACATTGGCCAAAATG+AGG 0.575395 7.1:-35571405 MS.gene94753:intron
ATGGCAGAAGTGGACGAACC+TGG 0.582040 7.1:+35571479 None:intergenic
AGGACTGCAGTCGTAAATCA+GGG 0.583792 7.1:-35572892 MS.gene94753:CDS
CAGAACGGTTATGGCAGAAG+TGG 0.584245 7.1:+35571469 None:intergenic
ATAATCAACATTTCCATCGG+TGG 0.584937 7.1:+35572790 None:intergenic
ATCATAATCAACATTTCCAT+CGG 0.590138 7.1:+35572787 None:intergenic
TTTCGTTAGATATGCACCCA+TGG 0.590866 7.1:+35573258 None:intergenic
CAATAGGTAACATCTGGTTG+CGG 0.597768 7.1:+35571744 None:intergenic
GTTAAAAGGAAACTCTAACA+TGG 0.599086 7.1:-35571882 MS.gene94753:CDS
AGTTGTTTAGTGTCTTCAAG+AGG 0.603416 7.1:-35571659 MS.gene94753:CDS
AGGAATCAAAGATGCATGTG+TGG 0.603422 7.1:-35572851 MS.gene94753:CDS
GGAATCAAAGATGCATGTGT+GGG 0.611657 7.1:-35572850 MS.gene94753:CDS
GAAGCATATAACACATATGG+TGG 0.620061 7.1:-35571560 MS.gene94753:CDS
AATTCTCAACTTAGTCAGAA+CGG 0.622832 7.1:+35571454 None:intergenic
CATGCAAGTTCATCCACCGA+TGG 0.627125 7.1:-35572803 MS.gene94753:CDS
GATGACTTATTCGTCACACC+AGG 0.633797 7.1:-35571497 MS.gene94753:CDS
AGCCTTGCAATCGTGCCCAA+AGG 0.637702 7.1:+35573127 None:intergenic
CATTCCATCACATCAGAGAG+AGG 0.639081 7.1:+35571431 None:intergenic
TCAGTTACCATGTAGACCGA+TGG 0.644233 7.1:+35571518 None:intergenic
AGGATTCACCAAGAAGCCAT+CGG 0.646853 7.1:-35571534 MS.gene94753:CDS
AAGTCACTGTAAATGTCACT+CGG 0.652751 7.1:-35572637 MS.gene94753:CDS
ATGGAATGTTCGATCAACAT+TGG 0.660973 7.1:-35571416 MS.gene94753:CDS
GTACTTTGTATGTATGAACC+AGG 0.661995 7.1:-35572912 MS.gene94753:CDS
GCTTCGACCAAGGAACACGA+TGG 0.703454 7.1:-35572987 MS.gene94753:CDS
GGACTGCAGTCGTAAATCAG+GGG 0.706855 7.1:-35572891 MS.gene94753:CDS
GCTTCACCAGTAAATGACTG+TGG 0.708157 7.1:+35571578 None:intergenic
ATGTGTTCCACACCTCCTAG+GGG 0.720437 7.1:+35571905 None:intergenic
TGTGTTCCACACCTCCTAGG+GGG 0.723442 7.1:+35571906 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCTATTAATTTGAAATATT+TGG - chr7.1:35572856-35572875 MS.gene94753:CDS 10.0%
!!! ATAAATTTCTTTTAAACTGT+TGG - chr7.1:35572057-35572076 MS.gene94753:CDS 15.0%
!!! TAAGTAAATTTTGTAAGAAA+TGG + chr7.1:35573258-35573277 None:intergenic 15.0%
!!! TGAAAATAATGGATTTTTTT+GGG + chr7.1:35572233-35572252 None:intergenic 15.0%
!!! TTGAAAATAATGGATTTTTT+TGG + chr7.1:35572234-35572253 None:intergenic 15.0%
!!! AAAATAATGGATTTTTTTGG+GGG + chr7.1:35572231-35572250 None:intergenic 20.0%
!!! GAAAATAATGGATTTTTTTG+GGG + chr7.1:35572232-35572251 None:intergenic 20.0%
! AAAAGAACTACTACTAACTT+CGG + chr7.1:35572834-35572853 None:intergenic 25.0%
! AAGATCAATCATTTGAGTAT+TGG + chr7.1:35571880-35571899 None:intergenic 25.0%
! AATATCCAAAAAGTTAGAGT+TGG - chr7.1:35571371-35571390 MS.gene94753:intron 25.0%
! ATCATAATCAACATTTCCAT+CGG + chr7.1:35571675-35571694 None:intergenic 25.0%
! CTTCAACACATTGAAAATAA+TGG + chr7.1:35572244-35572263 None:intergenic 25.0%
! GATAGTAAGAAAGACATATT+TGG - chr7.1:35572767-35572786 MS.gene94753:CDS 25.0%
! TAAATCCTGATACTTGTAAT+GGG - chr7.1:35571744-35571763 MS.gene94753:CDS 25.0%
! TAATTCCACAGAAAAAACAT+AGG + chr7.1:35573168-35573187 None:intergenic 25.0%
! TAGATTACAATGTAGTTGAT+AGG - chr7.1:35572097-35572116 MS.gene94753:CDS 25.0%
! TTAAAAGGAAACTCTAACAT+GGG - chr7.1:35572578-35572597 MS.gene94753:intron 25.0%
!! ACAATCTTATTACCTCATTT+TGG + chr7.1:35573069-35573088 None:intergenic 25.0%
!! ATGGAAATGTTGATTATGAT+GGG - chr7.1:35571675-35571694 MS.gene94753:CDS 25.0%
!! TTTAAGATCCACTAATTTGA+TGG - chr7.1:35572652-35572671 MS.gene94753:CDS 25.0%
!!! AAATAATGGATTTTTTTGGG+GGG + chr7.1:35572230-35572249 None:intergenic 25.0%
!!! AACAAAGACATTTGTTATGT+TGG - chr7.1:35572136-35572155 MS.gene94753:CDS 25.0%
!!! AACAAATGTCTTTGTTGTTA+GGG + chr7.1:35572132-35572151 None:intergenic 25.0%
!!! ACAAAGACATTTGTTATGTT+GGG - chr7.1:35572137-35572156 MS.gene94753:CDS 25.0%
!!! ACATTTTGTTTTGTAGATAC+TGG - chr7.1:35572283-35572302 MS.gene94753:intron 25.0%
!!! TAAAGGTGTCATTGAAAATA+AGG + chr7.1:35572324-35572343 None:intergenic 25.0%
!!! TAACAAATGTCTTTGTTGTT+AGG + chr7.1:35572133-35572152 None:intergenic 25.0%
AAACAAGAACACTCTTGTAT+AGG + chr7.1:35572616-35572635 None:intergenic 30.0%
AACACAGTATTGTTTGCTTT+GGG - chr7.1:35572488-35572507 MS.gene94753:intron 30.0%
AAGCTTATCCATCAAATTAG+TGG + chr7.1:35572663-35572682 None:intergenic 30.0%
AATCTCACACAACGAAAAAA+TGG + chr7.1:35572187-35572206 None:intergenic 30.0%
AATTCATTTGATTCTGGTAC+TGG - chr7.1:35572401-35572420 MS.gene94753:intron 30.0%
AATTCTCAACTTAGTCAGAA+CGG + chr7.1:35573008-35573027 None:intergenic 30.0%
ACCAGAATCAAATGAATTGA+TGG + chr7.1:35572399-35572418 None:intergenic 30.0%
ATCACGATCCAATAGTTTAT+TGG + chr7.1:35572012-35572031 None:intergenic 30.0%
ATGTCAGCAAACTAACAATA+AGG + chr7.1:35572532-35572551 None:intergenic 30.0%
CCAGAATCAAATGAATTGAT+GGG + chr7.1:35572398-35572417 None:intergenic 30.0%
CTCAAGAATACATCTGTTAA+AGG + chr7.1:35572341-35572360 None:intergenic 30.0%
GTAAATCCTGATACTTGTAA+TGG - chr7.1:35571743-35571762 MS.gene94753:CDS 30.0%
GTTAAAAGGAAACTCTAACA+TGG - chr7.1:35572577-35572596 MS.gene94753:intron 30.0%
TAACACAGTATTGTTTGCTT+TGG - chr7.1:35572487-35572506 MS.gene94753:intron 30.0%
TCACGATCCAATAGTTTATT+GGG + chr7.1:35572011-35572030 None:intergenic 30.0%
TGAAATATCTCTCGATTCAT+TGG + chr7.1:35571638-35571657 None:intergenic 30.0%
TGTATTCTTGAGAAAGAGTT+TGG - chr7.1:35572349-35572368 MS.gene94753:intron 30.0%
TTAAACTGTTGGATTGAGAT+TGG - chr7.1:35572068-35572087 MS.gene94753:CDS 30.0%
! GATGGAAATGTTGATTATGA+TGG - chr7.1:35571674-35571693 MS.gene94753:CDS 30.0%
! TACTTCCAACTCTAACTTTT+TGG + chr7.1:35571379-35571398 None:intergenic 30.0%
!!! ATACAAGAGTGTTCTTGTTT+TGG - chr7.1:35572616-35572635 MS.gene94753:intron 30.0%
!!! TCTCTTTTGACTTTGCTTTA+AGG + chr7.1:35572430-35572449 None:intergenic 30.0%
!!! TGTTACCTATGTTTTTTCTG+TGG - chr7.1:35573160-35573179 MS.gene94753:CDS 30.0%
AAAGAGAAATCCGATTGTCA+GGG - chr7.1:35571971-35571990 MS.gene94753:CDS 35.0%
AAAGCAGAAGCTTCATCAAT+AGG + chr7.1:35572734-35572753 None:intergenic 35.0%
AAGCTTCTTAACTTTGCCTT+TGG - chr7.1:35571316-35571335 MS.gene94753:intron 35.0%
AAGTCACTGTAAATGTCACT+CGG - chr7.1:35571822-35571841 MS.gene94753:CDS 35.0%
ACCTTGATGAAAAGCAATTC+TGG - chr7.1:35571426-35571445 MS.gene94753:CDS 35.0%
ACTATTGGATCGTGATCAAA+TGG - chr7.1:35572016-35572035 MS.gene94753:CDS 35.0%
AGAGTTTGGTTACTGAGAAT+AGG - chr7.1:35572363-35572382 MS.gene94753:intron 35.0%
AGCAGCATTTCTTTACAAAC+AGG + chr7.1:35571455-35571474 None:intergenic 35.0%
AGCTTCTTAACTTTGCCTTT+GGG - chr7.1:35571317-35571336 MS.gene94753:intron 35.0%
AGTTGTTTAGTGTCTTCAAG+AGG - chr7.1:35572800-35572819 MS.gene94753:CDS 35.0%
ATAATCAACATTTCCATCGG+TGG + chr7.1:35571672-35571691 None:intergenic 35.0%
ATAATGAAAGATGCTGTCTC+TGG + chr7.1:35571707-35571726 None:intergenic 35.0%
ATAGTCCCATTACAAGTATC+AGG + chr7.1:35571752-35571771 None:intergenic 35.0%
ATGGAATGTTCGATCAACAT+TGG - chr7.1:35573043-35573062 MS.gene94753:CDS 35.0%
CCCATCAATTCATTTGATTC+TGG - chr7.1:35572395-35572414 MS.gene94753:intron 35.0%
CGATGTTAAGCTTCATATGT+TGG + chr7.1:35571508-35571527 None:intergenic 35.0%
CTTCATCAATAGGTAACATC+TGG + chr7.1:35572724-35572743 None:intergenic 35.0%
GAAGCATATAACACATATGG+TGG - chr7.1:35572899-35572918 MS.gene94753:CDS 35.0%
GGGGGATTTAAAAAGTTCAA+TGG + chr7.1:35572212-35572231 None:intergenic 35.0%
GGTGAAGCATATAACACATA+TGG - chr7.1:35572896-35572915 MS.gene94753:CDS 35.0%
GTACTTTGTATGTATGAACC+AGG - chr7.1:35571547-35571566 MS.gene94753:CDS 35.0%
TCTTCCAGAAAGTTGTGATT+TGG - chr7.1:35571787-35571806 MS.gene94753:CDS 35.0%
! CAACTTTCTGGAAGATTTAC+AGG + chr7.1:35571782-35571801 None:intergenic 35.0%
! TCTGGTTGCGGATTTTAAAT+TGG + chr7.1:35572706-35572725 None:intergenic 35.0%
!! TCCAGAATTGCTTTTCATCA+AGG + chr7.1:35571430-35571449 None:intergenic 35.0%
!!! AAAGTTTTGTTTGTGCAAGC+AGG - chr7.1:35571269-35571288 MS.gene94753:intron 35.0%
!!! AAGTTTTGTTTGTGCAAGCA+GGG - chr7.1:35571270-35571289 MS.gene94753:intron 35.0%
AACTGTTGGATTGAGATTGG+AGG - chr7.1:35572071-35572090 MS.gene94753:CDS 40.0%
AATTCCTCTCTCTGATGTGA+TGG - chr7.1:35573024-35573043 MS.gene94753:CDS 40.0%
ACTGTTGGATTGAGATTGGA+GGG - chr7.1:35572072-35572091 MS.gene94753:CDS 40.0%
AGGAATCAAAGATGCATGTG+TGG - chr7.1:35571608-35571627 MS.gene94753:CDS 40.0%
AGTTTATTGGGTGTCTGCAT+AGG + chr7.1:35571999-35572018 None:intergenic 40.0%
CAAAGAGAAATCCGATTGTC+AGG - chr7.1:35571970-35571989 MS.gene94753:CDS 40.0%
CAACTTAGTCAGAACGGTTA+TGG + chr7.1:35573002-35573021 None:intergenic 40.0%
CAATAGGTAACATCTGGTTG+CGG + chr7.1:35572718-35572737 None:intergenic 40.0%
GATCAACATTGGCCAAAATG+AGG - chr7.1:35573054-35573073 MS.gene94753:CDS 40.0%
GCAGACACCCAATAAACTAT+TGG - chr7.1:35572001-35572020 MS.gene94753:CDS 40.0%
GCATCCAAATCACAACTTTC+TGG + chr7.1:35571794-35571813 None:intergenic 40.0%
GGAATCAAAGATGCATGTGT+GGG - chr7.1:35571609-35571628 MS.gene94753:CDS 40.0%
GGTGTGGAACACATGTTAAA+AGG - chr7.1:35572563-35572582 MS.gene94753:intron 40.0%
GTTATGTTGGGACATGAACT+CGG - chr7.1:35572149-35572168 MS.gene94753:CDS 40.0%
TATAACACATATGGTGGCAG+AGG - chr7.1:35572905-35572924 MS.gene94753:CDS 40.0%
TATTCTTCCATCGTGTTCCT+TGG + chr7.1:35571482-35571501 None:intergenic 40.0%
TCATCATCTGCTCTGACTAA+TGG - chr7.1:35573225-35573244 MS.gene94753:CDS 40.0%
TGTAAATGTCACTCGGAAAG+AGG - chr7.1:35571829-35571848 MS.gene94753:CDS 40.0%
TGTTTAGTGTCTTCAAGAGG+AGG - chr7.1:35572803-35572822 MS.gene94753:CDS 40.0%
! ACAGTATTGTTTGCTTTGGG+TGG - chr7.1:35572491-35572510 MS.gene94753:intron 40.0%
!! TGTCTTTGTTGTTAGGGCAT+CGG + chr7.1:35572126-35572145 None:intergenic 40.0%
AGGACTGCAGTCGTAAATCA+GGG - chr7.1:35571567-35571586 MS.gene94753:CDS 45.0%
AGGATTCACCAAGAAGCCAT+CGG - chr7.1:35572925-35572944 MS.gene94753:CDS 45.0%
CATTCCATCACATCAGAGAG+AGG + chr7.1:35573031-35573050 None:intergenic 45.0%
GATGACTTATTCGTCACACC+AGG - chr7.1:35572962-35572981 MS.gene94753:CDS 45.0%
GCAAGCAGGGAAATACTTCA+TGG - chr7.1:35571283-35571302 MS.gene94753:intron 45.0%
GCTTCACCAGTAAATGACTG+TGG + chr7.1:35572884-35572903 None:intergenic 45.0%
TCAGTTACCATGTAGACCGA+TGG + chr7.1:35572944-35572963 None:intergenic 45.0%
TGCATAGGATCCCTGACAAT+CGG + chr7.1:35571984-35572003 None:intergenic 45.0%
TTGGAGCCACAGTCATTTAC+TGG - chr7.1:35572875-35572894 MS.gene94753:CDS 45.0%
! AAGAAATGCTGCTTCGACCA+AGG - chr7.1:35571462-35571481 MS.gene94753:CDS 45.0%
! ATTGTTTGCTTTGGGTGGAG+AGG - chr7.1:35572496-35572515 MS.gene94753:intron 45.0%
! GGGCATTGTTGAGTACTTTC+AGG - chr7.1:35571588-35571607 MS.gene94753:CDS 45.0%
ACATGTGTTCCACACCTCCT+AGG + chr7.1:35572559-35572578 None:intergenic 50.0%
ATGTGTTCCACACCTCCTAG+GGG + chr7.1:35572557-35572576 None:intergenic 50.0%
CAAGAAGCCATCGGTCTACA+TGG - chr7.1:35572934-35572953 MS.gene94753:CDS 50.0%
CAGAACGGTTATGGCAGAAG+TGG + chr7.1:35572993-35573012 None:intergenic 50.0%
CAGGACTGCAGTCGTAAATC+AGG - chr7.1:35571566-35571585 MS.gene94753:CDS 50.0%
CATGCAAGTTCATCCACCGA+TGG - chr7.1:35571656-35571675 MS.gene94753:CDS 50.0%
CATGTAGACCGATGGCTTCT+TGG + chr7.1:35572936-35572955 None:intergenic 50.0%
CATGTGTTCCACACCTCCTA+GGG + chr7.1:35572558-35572577 None:intergenic 50.0%
CTGATTTACGACTGCAGTCC+TGG + chr7.1:35571568-35571587 None:intergenic 50.0%
GGACTGCAGTCGTAAATCAG+GGG - chr7.1:35571568-35571587 MS.gene94753:CDS 50.0%
TTTGGGTGGAGAGGACTTTG+CGG - chr7.1:35572505-35572524 MS.gene94753:intron 50.0%
!! AGTTTGCTGACATTCCCCCT+AGG - chr7.1:35572539-35572558 MS.gene94753:intron 50.0%
AGCCTTGCAATCGTGCCCAA+AGG + chr7.1:35571335-35571354 None:intergenic 55.0%
ATGGCAGAAGTGGACGAACC+TGG + chr7.1:35572983-35573002 None:intergenic 55.0%
GCTTCGACCAAGGAACACGA+TGG - chr7.1:35571472-35571491 MS.gene94753:CDS 55.0%
TGCCTTTGGGCACGATTGCA+AGG - chr7.1:35571330-35571349 MS.gene94753:intron 55.0%
TGTGTTCCACACCTCCTAGG+GGG + chr7.1:35572556-35572575 None:intergenic 55.0%
TTGCTGACATTCCCCCTAGG+AGG - chr7.1:35572542-35572561 MS.gene94753:intron 55.0%
GACATTCCCCCTAGGAGGTG+TGG - chr7.1:35572547-35572566 MS.gene94753:intron 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 35571203 35573278 35571203 ID=MS.gene94753
chr7.1 mRNA 35571203 35573278 35571203 ID=MS.gene94753.t1;Parent=MS.gene94753
chr7.1 exon 35572631 35573278 35572631 ID=MS.gene94753.t1.exon1;Parent=MS.gene94753.t1
chr7.1 CDS 35572631 35573278 35572631 ID=cds.MS.gene94753.t1;Parent=MS.gene94753.t1
chr7.1 exon 35571406 35572182 35571406 ID=MS.gene94753.t1.exon2;Parent=MS.gene94753.t1
chr7.1 CDS 35571406 35572182 35571406 ID=cds.MS.gene94753.t1;Parent=MS.gene94753.t1
chr7.1 exon 35571203 35571286 35571203 ID=MS.gene94753.t1.exon3;Parent=MS.gene94753.t1
chr7.1 CDS 35571203 35571286 35571203 ID=cds.MS.gene94753.t1;Parent=MS.gene94753.t1
Gene Sequence

>MS.gene94753

ATGGGTGCATATCTAACGAAAGAACAACATATCAGTGTGAATCTTTTCGTAGATGAAGAGAAAAATAAAGTTTTGTTTGTGCAAGCAGGGAAATACTTCATGGATGTGTTGCTAAGCTTCTTAACTTTGCCTTTGGGCACGATTGCAAGGCTTGTGAGTAAGAACTCTAATATCCAAAAAGTTAGAGTTGGAAGTATAAGCTCTTTGTATGATAGCGTTGTCAACCTTGATGAAAAGCAATTCTGGACACCTGTTTGTAAAGAAATGCTGCTTCGACCAAGGAACACGATGGAAGAATATTGCCAACATATGAAGCTTAACATCGATGATACTGAGAAAATAAAGTACTTTGTATGTATGAACCAGGACTGCAGTCGTAAATCAGGGGCATTGTTGAGTACTTTCAGGAATCAAAGATGCATGTGTGGGAAACCAATGAATCGAGAGATATTTCATGCAAGTTCATCCACCGATGGAAATGTTGATTATGATGGGTTTGTTCCAGAGACAGCATCTTTCATTATTTCAGATGATTTGAGTGTAAATCCTGATACTTGTAATGGGACTATTTTGAAACCTGTAAATCTTCCAGAAAGTTGTGATTTGGATGCTATCAAGCAAGTCACTGTAAATGTCACTCGGAAAGAGGTATTTATATCTGTTTCATGAAATTTCCAATACTCAAATGATTGATCTTATTTTATTGTGATTTATTTTCTTTTTTTCTTTAAGCAATTGATCATTGATATCTATGAAAAAATAGCGCTCAAAGAGAAATCCGATTGTCAGGGATCCTATGCAGACACCCAATAAACTATTGGATCGTGATCAAATGGTTTAGATTACAACGTAATATAAATTTCTTTTAAACTGTTGGATTGAGATTGGAGGGTCTAGATTACAATGTAGTTGATAGGTTACCGATGCCCTAACAACAAAGACATTTGTTATGTTGGGACATGAACTCGGACATACAATTAACCATTTTTTCGTTGTGTGAGATTCGCCATTGAACTTTTTAAATCCCCCCAAAAAAATCCATTATTTTCAATGTGTTGAAGTTTTTTTATTTTATAACAAACATTTTGTTTTGTAGATACTGGACTTGCTCAAGTGCTCCTTATTTTCAATGACACCTTTAACAGATGTATTCTTGAGAAAGAGTTTGGTTACTGAGAATAGGCAAGCACAACCCATCAATTCATTTGATTCTGGTACTGGTGACCTTAAAGCAAAGTCAAAAGAGAGAAAAATAACAGTAAAGATACTCGTAAGAAAATCAAGTAACACAGTATTGTTTGCTTTGGGTGGAGAGGACTTTGCGGACCTTATTGTTAGTTTGCTGACATTCCCCCTAGGAGGTGTGGAACACATGTTAAAAGGAAACTCTAACATGGGCAGCATTGATAACCTATACAAGAGTGTTCTTGTTTTGGATCATTCTAACTATTTAAGATCCACTAATTTGATGGATAAGCTTGTTAATTCTAAGCTTGCACACCAATTTAAAATCCGCAACCAGATGTTACCTATTGATGAAGCTTCTGCTTTTAATTACTCTTGCGATAGTAAGAAAGACATATTTGGTGACTTTAATAGTTGTTTAGTGTCTTCAAGAGGAGGTTCTGCCGAAGTTAGTAGTAGTTCTTTTGCTTCTATTAATTTGAAATATTTGGAGCCACAGTCATTTACTGGTGAAGCATATAACACATATGGTGGCAGAGGATTCACCAAGAAGCCATCGGTCTACATGGTAACTGATGACTTATTCGTCACACCAGGTTCGTCCACTTCTGCCATAACCGTTCTGACTAAGTTGAGAATTCCTCTCTCTGATGTGATGGAATGTTCGATCAACATTGGCCAAAATGAGGTAATAAGATTGTCTCTGTTATTTTAATCTGCGTTGTTTCATATTTCTAATCAAATAGTAAATTGTTTCTTTTTTTTAGTATTCTGTTACCTATGTTTTTTCTGTGGAATTAATTGCAGTGTCTCAGCATTTTGAAAGCTTCTTTAATCTCATCATCTGCTCTGACTAATGGTTTGAGTCCATTTCTTACAAAATTTACTTAA
Protein sequence

>MS.gene94753.t1

MGAYLTKEQHISVNLFVDEEKNKVLFVQAGKYFMDVLLSFLTLPLGTIARLVSKNSNIQKVRVGSISSLYDSVVNLDEKQFWTPVCKEMLLRPRNTMEEYCQHMKLNIDDTEKIKYFVCMNQDCSRKSGALLSTFRNQRCMCGKPMNREIFHASSSTDGNVDYDGFVPETASFIISDDLSVNPDTCNGTILKPVNLPESCDLDAIKQVTVNVTRKEILDLLKCSLFSMTPLTDVFLRKSLVTENRQAQPINSFDSGTGDLKAKSKERKITVKILVRKSSNTVLFALGGEDFADLIVSLLTFPLGGVEHMLKGNSNMGSIDNLYKSVLVLDHSNYLRSTNLMDKLVNSKLAHQFKIRNQMLPIDEASAFNYSCDSKKDIFGDFNSCLVSSRGGSAEVSSSSFASINLKYLEPQSFTGEAYNTYGGRGFTKKPSVYMVTDDLFVTPGSSTSAITVLTKLRIPLSDVMECSINIGQNECLSILKASLISSSALTNGLSPFLTKFT