AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene46093

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46093.t1 MTR_7g062300 54.873 472 200 7 2 462 3 472 2.73e-172 493
MS.gene46093.t1 MTR_7g062280 52.546 491 206 7 3 468 2 490 3.55e-167 481
MS.gene46093.t1 MTR_7g063900 55.031 487 187 9 3 463 2 482 3.37e-163 471
MS.gene46093.t1 MTR_7g063840 54.545 484 192 12 1 468 1 472 5.88e-163 469
MS.gene46093.t1 MTR_7g063920 53.138 478 171 6 1 468 1 435 7.36e-162 465
MS.gene46093.t1 MTR_7g063880 54.938 486 182 12 1 468 1 467 8.51e-157 454
MS.gene46093.t1 MTR_7g063830 52.665 469 192 9 3 468 2 443 2.46e-155 449
MS.gene46093.t1 MTR_7g063890 55.172 493 174 12 4 463 20 498 2.15e-152 444
MS.gene46093.t1 MTR_7g063820 52.024 494 197 11 3 468 2 483 3.42e-145 425
MS.gene46093.t1 MTR_7g063660 50.313 479 204 11 12 468 10 476 3.81e-145 424
MS.gene46093.t1 MTR_7g063660 29.787 235 134 8 8 228 247 464 3.85e-18 87.4
MS.gene46093.t1 MTR_3g007740 50.318 471 187 10 7 463 5 442 2.95e-135 398
MS.gene46093.t1 MTR_7g063720 78.049 246 46 2 234 479 1 238 1.37e-133 386
MS.gene46093.t1 MTR_7g063720 30.137 219 126 10 14 229 26 220 9.52e-16 77.0
MS.gene46093.t1 MTR_7g063670 48.394 467 205 10 9 465 13 453 6.04e-129 382
MS.gene46093.t1 MTR_7g066570 43.478 483 225 12 12 463 15 480 6.89e-112 342
MS.gene46093.t1 MTR_7g066260 41.983 474 244 10 3 463 7 462 3.76e-104 320
MS.gene46093.t1 MTR_3g065200 42.982 456 192 13 12 450 4 408 9.17e-100 307
MS.gene46093.t1 MTR_7g066430 39.501 481 256 8 12 460 5 482 4.73e-96 299
MS.gene46093.t1 MTR_7g058710 38.431 497 259 13 2 468 3 482 2.13e-93 292
MS.gene46093.t1 MTR_7g012680 39.362 470 228 9 12 463 15 445 2.13e-93 291
MS.gene46093.t1 MTR_7g066480 39.224 464 205 9 12 460 17 418 4.64e-92 286
MS.gene46093.t1 MTR_7g066480 28.241 216 140 6 256 457 16 230 6.77e-11 64.7
MS.gene46093.t1 MTR_7g066410 36.542 509 265 10 9 463 8 512 8.65e-91 286
MS.gene46093.t1 MTR_7g066410 29.508 244 138 8 5 229 278 506 7.96e-15 77.0
MS.gene46093.t1 MTR_7g066410 33.333 132 66 4 252 377 6 121 1.80e-11 66.6
MS.gene46093.t1 MTR_7g066350 37.938 485 229 9 12 466 10 452 2.92e-89 280
MS.gene46093.t1 MTR_7g066340 38.462 494 262 12 1 481 1 465 5.54e-89 280
MS.gene46093.t1 MTR_7g066290 40.215 465 218 11 12 463 16 433 9.58e-89 278
MS.gene46093.t1 MTR_7g066360 40.928 474 236 10 1 459 1 445 1.82e-88 279
MS.gene46093.t1 MTR_7g066400 38.155 477 228 11 10 466 11 440 3.22e-85 270
MS.gene46093.t1 MTR_7g066580 36.688 477 236 11 17 463 1 441 4.80e-84 266
MS.gene46093.t1 MTR_7g066580 29.185 233 139 9 14 230 218 440 4.60e-14 74.7
MS.gene46093.t1 MTR_7g066490 38.022 455 209 10 12 460 17 404 8.99e-82 259
MS.gene46093.t1 MTR_7g066490 27.556 225 116 7 256 457 16 216 2.48e-11 65.9
MS.gene46093.t1 MTR_1g041315 36.087 460 247 8 12 447 15 451 1.03e-81 262
MS.gene46093.t1 MTR_1g041315 26.446 242 138 9 249 457 9 243 1.20e-12 70.5
MS.gene46093.t1 MTR_4g019310 34.592 503 275 13 5 465 2 492 6.96e-72 236
MS.gene46093.t1 MTR_7g058700 35.760 467 198 14 23 463 531 921 1.56e-70 241
MS.gene46093.t1 MTR_4g017830 34.411 526 272 19 1 470 1 509 2.17e-70 233
MS.gene46093.t1 MTR_7g063850 45.183 301 137 7 182 468 1 287 2.48e-66 216
MS.gene46093.t1 MTR_2g029400 34.199 462 211 13 12 452 15 404 1.88e-64 214
MS.gene46093.t1 MTR_2g029400 25.926 216 115 7 249 457 6 183 1.88e-13 72.4
MS.gene46093.t1 MTR_4g019340 34.151 489 247 17 12 451 39 501 2.22e-62 211
MS.gene46093.t1 MTR_4g019340 29.515 227 124 9 9 224 301 502 3.24e-14 75.1
MS.gene46093.t1 MTR_4g017610 32.335 501 273 15 1 460 1 476 2.09e-59 203
MS.gene46093.t1 MTR_4g017410 31.213 503 283 17 4 463 2 484 3.48e-57 197
MS.gene46093.t1 MTR_4g017440 30.528 511 269 13 14 463 17 502 1.88e-55 193
MS.gene46093.t1 MTR_7g063690 44.086 279 86 7 9 283 10 222 2.16e-55 185
MS.gene46093.t1 MTR_7g100420 40.705 312 158 6 163 459 94 393 5.31e-55 189
MS.gene46093.t1 MTR_7g100420 64.000 50 18 0 5 54 33 82 1.70e-13 72.4
MS.gene46093.t1 MTR_4g017470 29.175 521 271 13 1 468 1 476 6.41e-55 191
MS.gene46093.t1 MTR_7g062270 54.255 188 82 4 1 187 1 185 5.24e-54 186
MS.gene46093.t1 MTR_1g014060 44.390 205 107 4 20 221 9 209 2.73e-44 160
MS.gene46093.t1 MTR_1g014060 39.665 179 103 2 286 463 210 384 1.27e-29 120
MS.gene46093.t1 MTR_1g014060 27.711 249 128 8 269 485 13 241 1.04e-13 73.2
MS.gene46093.t1 MTR_7g066280 31.280 422 210 16 90 463 1 390 3.15e-40 150
MS.gene46093.t1 MTR_7g066280 28.163 245 129 10 17 229 155 384 7.54e-16 79.7
MS.gene46093.t1 MTR_7g066680 34.219 301 142 7 212 459 37 334 6.05e-40 147
MS.gene46093.t1 MTR_7g066680 28.846 208 131 8 14 214 89 286 1.52e-15 78.2
MS.gene46093.t1 MTR_8g023240 28.092 477 285 16 8 455 34 481 1.08e-38 148
MS.gene46093.t1 MTR_4g017550 29.019 479 250 18 41 459 21 469 5.54e-37 142
MS.gene46093.t1 MTR_4g017550 28.452 239 135 9 14 233 250 471 1.13e-12 70.5
MS.gene46093.t1 MTR_8g445860 35.366 246 134 6 1 235 7 238 1.13e-34 130
MS.gene46093.t1 MTR_8g445860 28.125 224 133 6 256 456 13 231 2.41e-16 79.0
MS.gene46093.t1 MTR_1g115440 37.200 250 127 8 1 233 1 237 3.18e-34 129
MS.gene46093.t1 MTR_7g066310 33.937 221 115 2 250 463 187 383 1.25e-30 123
MS.gene46093.t1 MTR_7g066310 55.455 110 48 1 12 120 8 117 7.90e-29 118
MS.gene46093.t1 MTR_7g066310 32.093 215 109 8 17 229 198 377 1.36e-17 85.1
MS.gene46093.t1 MTR_0150s0010 35.537 242 138 5 3 233 2 236 3.84e-30 117
MS.gene46093.t1 MTR_0150s0010 30.942 223 131 6 256 456 10 231 2.97e-18 84.3
MS.gene46093.t1 MTR_7g063870 69.737 76 23 0 144 219 82 157 1.59e-25 105
MS.gene46093.t1 MTR_7g063870 75.000 56 14 0 5 60 25 80 2.47e-18 85.1
MS.gene46093.t1 MTR_1g115455 34.016 244 133 10 4 233 2 231 5.64e-24 100
MS.gene46093.t1 MTR_2g067310 34.737 190 75 7 12 195 44 190 2.02e-17 82.0
MS.gene46093.t1 MTR_1g115450 37.692 130 67 4 1 125 1 121 3.72e-16 75.9
MS.gene46093.t1 MTR_4g019240 42.727 110 53 3 12 113 14 121 5.24e-16 76.6
MS.gene46093.t1 MTR_7g066390 31.737 167 69 1 297 463 1 122 9.83e-15 72.0
MS.gene46093.t1 MTR_8g445920 43.956 91 46 1 3 93 2 87 1.46e-14 70.1
MS.gene46093.t1 MTR_8g044890 43.956 91 46 1 3 93 2 87 1.46e-14 70.1
MS.gene46093.t1 MTR_7g063760 46.479 71 37 1 399 468 2 72 1.85e-14 68.6
MS.gene46093.t1 MTR_1g115470 43.617 94 46 2 14 105 9 97 1.02e-13 73.6
MS.gene46093.t1 MTR_0150s0030 42.105 95 46 3 1 94 1 87 2.40e-13 69.3
MS.gene46093.t1 MTR_8g445910 43.158 95 45 3 1 94 1 87 1.67e-12 68.2
MS.gene46093.t1 MTR_8g044880 43.158 95 45 3 1 94 1 87 1.88e-12 68.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene46093.t1 AT5G01130 32.704 477 280 12 4 468 2 449 3.53e-61 207
MS.gene46093.t1 AT5G01120 32.238 487 280 12 12 459 10 485 2.24e-57 198
MS.gene46093.t1 AT5G01120 29.752 242 144 10 6 235 262 489 6.90e-14 74.3
MS.gene46093.t1 AT3G09140 31.225 506 289 13 3 463 2 493 6.00e-57 197
MS.gene46093.t1 AT5G01150 32.049 493 293 11 4 466 2 482 7.00e-57 197
MS.gene46093.t1 AT3G09110 37.383 321 178 6 14 321 12 322 4.74e-54 185
MS.gene46093.t1 AT3G09110 27.027 222 144 8 253 457 6 226 2.76e-11 65.5
MS.gene46093.t1 AT3G09140 29.135 532 294 13 3 463 2 521 9.72e-52 184
MS.gene46093.t1 AT5G43240 32.500 520 290 15 4 476 2 507 5.98e-50 178
MS.gene46093.t1 AT5G43240 32.500 520 290 15 4 476 2 507 5.98e-50 178
MS.gene46093.t1 AT5G43240 32.500 520 290 15 4 476 2 507 5.98e-50 178
MS.gene46093.t1 AT5G01140 29.268 492 300 14 1 473 1 463 2.22e-48 173
MS.gene46093.t1 AT3G09120 37.855 317 169 7 12 310 7 313 1.44e-47 167
MS.gene46093.t1 AT5G37320 26.984 504 314 13 1 469 1 485 4.05e-33 131
MS.gene46093.t1 AT5G43240 29.513 349 202 10 162 476 25 363 1.75e-17 84.3

Find 80 sgRNAs with CRISPR-Local

Find 102 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATCAACAATTCTATTCT+TGG 0.237094 7.2:+41652654 None:intergenic
CTCATTTATCCCCACAGTTT+GGG 0.266381 7.2:-41652633 MS.gene46093:CDS
CATTCAAAGGAGTTTGAAAA+TGG 0.274574 7.2:+41652377 None:intergenic
CCTCATTTATCCCCACAGTT+TGG 0.299678 7.2:-41652634 MS.gene46093:CDS
ATAAAACTTTGTTGCTCTCT+TGG 0.301043 7.2:+41653686 None:intergenic
CTTGTAATATCCATTGAGTT+TGG 0.311703 7.2:+41653208 None:intergenic
GTACCATAGCATACTTGATT+TGG 0.323415 7.2:-41652707 MS.gene46093:CDS
GGAGGAGTTGTACGTATGTT+TGG 0.323513 7.2:-41652763 MS.gene46093:CDS
TTTGGTATGCTCCAGAGTTT+TGG 0.326522 7.2:-41653184 MS.gene46093:CDS
GTTTGGAGGAAACTGTTCTT+TGG 0.327675 7.2:-41652746 MS.gene46093:CDS
AACTCCTTTGAATGACTTGA+AGG 0.334806 7.2:-41652368 MS.gene46093:CDS
GTTTCTTACATGTCTGTTGA+TGG 0.337172 7.2:-41652487 MS.gene46093:CDS
TCAATGGATATTACAAGCTT+TGG 0.378411 7.2:-41653202 MS.gene46093:CDS
ATTAAATGTAAAACTGAAGT+TGG 0.382735 7.2:+41652403 None:intergenic
AGCTTCTTAACATTACCATT+TGG 0.402316 7.2:-41653625 MS.gene46093:CDS
TTTGAATGACTTGAAGGAAA+AGG 0.415391 7.2:-41652362 MS.gene46093:CDS
AATACACTTGTAATACTTTG+TGG 0.418975 7.2:+41653402 None:intergenic
GGATCTTCTGAAGTGCTCAT+TGG 0.422757 7.2:-41652995 MS.gene46093:CDS
ATACACTTGTAATACTTTGT+GGG 0.426799 7.2:+41653403 None:intergenic
TTTGGAGGAAACTGTTCTTT+GGG 0.428063 7.2:-41652745 MS.gene46093:CDS
CCATGTTGTCGCAGATGACT+TGG 0.432121 7.2:-41652443 MS.gene46093:CDS
TACAAATGGTCTTGGACACT+TGG 0.433960 7.2:-41652164 MS.gene46093:CDS
CAACCATTGGATTGTCATCA+AGG 0.434484 7.2:-41652930 MS.gene46093:CDS
CCGAACCAACAGTCGTCATC+AGG 0.444536 7.2:+41653325 None:intergenic
GTTAACAGATCTTTGTAAGT+TGG 0.448565 7.2:+41652114 None:intergenic
TGCAATGGATTTGTTAAAGA+TGG 0.450449 7.2:-41653268 MS.gene46093:CDS
TGTCAATGTCACAAAGGAAA+AGG 0.458541 7.2:-41653128 MS.gene46093:intron
TGGTCCACCACAAGTTTCAA+TGG 0.464148 7.2:+41653706 None:intergenic
ACAATGGGATCTGTTACAAT+TGG 0.470466 7.2:-41653571 MS.gene46093:CDS
CTTGATGACAATCCAATGGT+TGG 0.475321 7.2:+41652931 None:intergenic
CATTCAATTCACAATTAAGC+TGG 0.492693 7.2:-41652875 MS.gene46093:CDS
AAGAGTCATGCCAAACTCAA+TGG 0.497378 7.2:-41653218 MS.gene46093:CDS
GGGAAAATATTGTATGCTCA+AGG 0.502524 7.2:-41652835 MS.gene46093:CDS
GCAGCTCTTACAAATGGTCT+TGG 0.502895 7.2:-41652172 MS.gene46093:CDS
AAGGAAAAGGTTATCAACAT+TGG 0.509621 7.2:-41652349 MS.gene46093:CDS
TATCAACATTGGTCTTAAAG+AGG 0.511342 7.2:-41652338 MS.gene46093:intron
CCTGATGACGACTGTTGGTT+CGG 0.515291 7.2:-41653325 MS.gene46093:CDS
GCAACCACATAACTCCTTCG+AGG 0.515369 7.2:-41653467 MS.gene46093:CDS
GCAGTGTCTAAGCATATTGA+AGG 0.515824 7.2:-41652212 MS.gene46093:intron
AAAGCACACTTGTTCTGTAA+AGG 0.516480 7.2:-41653158 MS.gene46093:CDS
TGTGCTTTATTCCAAAACTC+TGG 0.523565 7.2:+41653173 None:intergenic
TGTCAAGATCTGCCACACTT+TGG 0.525138 7.2:+41653530 None:intergenic
TTTATTTGCTGAAGCAGGAA+AGG 0.525888 7.2:-41653668 MS.gene46093:CDS
GAAGTACGTCTGCAAAATCA+TGG 0.528021 7.2:+41652809 None:intergenic
CATCCAAATCAAGTATGCTA+TGG 0.528391 7.2:+41652704 None:intergenic
TTAAGAATGAAACCAACCAT+TGG 0.528522 7.2:-41652943 MS.gene46093:CDS
TCAACAGCAGCTCTTACAAA+TGG 0.533519 7.2:-41652178 MS.gene46093:CDS
CTGAAAACACAATTCTGCAA+TGG 0.539588 7.2:-41653283 MS.gene46093:CDS
CCAAGTCATCTGCGACAACA+TGG 0.545022 7.2:+41652443 None:intergenic
ATACGTACAACTCCTCCTAA+AGG 0.546564 7.2:+41652769 None:intergenic
GGAGTTGTACGTATGTTTGG+AGG 0.559638 7.2:-41652760 MS.gene46093:CDS
GATTCGTCAGCCCAAACTGT+GGG 0.565076 7.2:+41652623 None:intergenic
CTGGTTATAAGAAAATCAGA+TGG 0.573954 7.2:-41652856 MS.gene46093:CDS
ATTTGTAAGAGCTGCTGTTG+AGG 0.575365 7.2:+41652180 None:intergenic
AGTCGTGTGATGGTTCCAAA+TGG 0.578063 7.2:+41653610 None:intergenic
AAAACATCAACGAAATCGCA+TGG 0.589010 7.2:+41653367 None:intergenic
GGAAAATATTGTATGCTCAA+GGG 0.589717 7.2:-41652834 MS.gene46093:CDS
GATTGTATGAAAGAAGAGAA+AGG 0.592818 7.2:-41653505 MS.gene46093:CDS
CTTGGTGATTGAAGAACAAG+AGG 0.603250 7.2:-41652146 MS.gene46093:CDS
CCAAACTGTGGGGATAAATG+AGG 0.616498 7.2:+41652634 None:intergenic
TCTGTTGATGGTTATGTGAA+GGG 0.619292 7.2:-41652475 MS.gene46093:CDS
AATCCTTGATGACAATCCAA+TGG 0.620913 7.2:+41652927 None:intergenic
TTCTAGTTCTACTCAATCAG+AGG 0.624316 7.2:-41653737 MS.gene46093:CDS
CAAGTCATCTGCGACAACAT+GGG 0.627513 7.2:+41652444 None:intergenic
GGTGATTGAAGAACAAGAGG+GGG 0.630222 7.2:-41652143 MS.gene46093:CDS
TAATCCTCGAAGGAGTTATG+TGG 0.632148 7.2:+41653463 None:intergenic
AATGATTGTCAATGTCACAA+AGG 0.636541 7.2:-41653134 MS.gene46093:CDS
GTCTGTTGATGGTTATGTGA+AGG 0.640253 7.2:-41652476 MS.gene46093:CDS
TGGTTATAAGAAAATCAGAT+GGG 0.648613 7.2:-41652855 MS.gene46093:CDS
TTGGTGATTGAAGAACAAGA+GGG 0.649123 7.2:-41652145 MS.gene46093:CDS
AATGTCCTGATGACGACTGT+TGG 0.660850 7.2:-41653330 MS.gene46093:CDS
AGAGCTGCAATAATCCTCGA+AGG 0.663808 7.2:+41653453 None:intergenic
TGATTCGTCAGCCCAAACTG+TGG 0.666587 7.2:+41652622 None:intergenic
TAACAATCTCTACCAAAGTG+TGG 0.667124 7.2:-41653542 MS.gene46093:CDS
GTATGTGCCATTGAAACTTG+TGG 0.675302 7.2:-41653713 MS.gene46093:CDS
TGGTGATTGAAGAACAAGAG+GGG 0.696303 7.2:-41652144 MS.gene46093:CDS
GTGATTGAAGAACAAGAGGG+GGG 0.705515 7.2:-41652142 MS.gene46093:CDS
ATTCGTCAGCCCAAACTGTG+GGG 0.710409 7.2:+41652624 None:intergenic
TGTGCCATTGAAACTTGTGG+TGG 0.711857 7.2:-41653710 MS.gene46093:CDS
TTGTGATGTTGAAAACACTG+AGG 0.849118 7.2:-41652899 MS.gene46093:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TGTTTAATATTATTCTATAT+AGG - chr7.2:41652810-41652829 MS.gene46093:CDS 10.0%
!! AAGAAAAATAACAAGTTAAT+AGG + chr7.2:41653598-41653617 None:intergenic 15.0%
!! ATTAAACAAATCAAACAAAA+AGG + chr7.2:41652798-41652817 None:intergenic 15.0%
!! ATATTATTCTATATAGGTAC+TGG - chr7.2:41652816-41652835 MS.gene46093:CDS 20.0%
!! ATTAAATGTAAAACTGAAGT+TGG + chr7.2:41653432-41653451 None:intergenic 20.0%
! AATACACTTGTAATACTTTG+TGG + chr7.2:41652433-41652452 None:intergenic 25.0%
! ATACACTTGTAATACTTTGT+GGG + chr7.2:41652432-41652451 None:intergenic 25.0%
! TGGTTATAAGAAAATCAGAT+GGG - chr7.2:41652977-41652996 MS.gene46093:CDS 25.0%
!! ATCTATCTTTTCACAAGTTA+TGG + chr7.2:41653289-41653308 None:intergenic 25.0%
AAGGAAAAGGTTATCAACAT+TGG - chr7.2:41653483-41653502 MS.gene46093:CDS 30.0%
AATGATTGTCAATGTCACAA+AGG - chr7.2:41652698-41652717 MS.gene46093:CDS 30.0%
AGCTTCTTAACATTACCATT+TGG - chr7.2:41652207-41652226 MS.gene46093:CDS 30.0%
AGGATCAACAATTCTATTCT+TGG + chr7.2:41653181-41653200 None:intergenic 30.0%
ATAAAACTTTGTTGCTCTCT+TGG + chr7.2:41652149-41652168 None:intergenic 30.0%
CATTCAAAGGAGTTTGAAAA+TGG + chr7.2:41653458-41653477 None:intergenic 30.0%
CATTCAATTCACAATTAAGC+TGG - chr7.2:41652957-41652976 MS.gene46093:CDS 30.0%
CTGGTTATAAGAAAATCAGA+TGG - chr7.2:41652976-41652995 MS.gene46093:CDS 30.0%
CTTCAAAAAGAGTCAACAAT+GGG - chr7.2:41652246-41652265 MS.gene46093:intron 30.0%
CTTGTAATATCCATTGAGTT+TGG + chr7.2:41652627-41652646 None:intergenic 30.0%
GATTGTATGAAAGAAGAGAA+AGG - chr7.2:41652327-41652346 MS.gene46093:intron 30.0%
GGAAAATATTGTATGCTCAA+GGG - chr7.2:41652998-41653017 MS.gene46093:CDS 30.0%
GTTAACAGATCTTTGTAAGT+TGG + chr7.2:41653721-41653740 None:intergenic 30.0%
TCAATGGATATTACAAGCTT+TGG - chr7.2:41652630-41652649 MS.gene46093:CDS 30.0%
TCTTCAAAAAGAGTCAACAA+TGG - chr7.2:41652245-41652264 MS.gene46093:intron 30.0%
TTAAGAATGAAACCAACCAT+TGG - chr7.2:41652889-41652908 MS.gene46093:CDS 30.0%
TTTGAAAATCGAGTCTATAC+AGG + chr7.2:41653535-41653554 None:intergenic 30.0%
TTTGAATGACTTGAAGGAAA+AGG - chr7.2:41653470-41653489 MS.gene46093:CDS 30.0%
! AGTTTTCTGACTTTTCCTTT+AGG - chr7.2:41653048-41653067 MS.gene46093:intron 30.0%
! ATCAGATTTTTCCAATTCGT+CGG - chr7.2:41653229-41653248 MS.gene46093:CDS 30.0%
! TTTTCCTTCAAGTCATTCAA+AGG + chr7.2:41653471-41653490 None:intergenic 30.0%
!! TATCAACATTGGTCTTAAAG+AGG - chr7.2:41653494-41653513 MS.gene46093:CDS 30.0%
!! TGCAATGGATTTGTTAAAGA+TGG - chr7.2:41652564-41652583 MS.gene46093:CDS 30.0%
!!! AAAGTTTTATTTGCTGAAGC+AGG - chr7.2:41652159-41652178 MS.gene46093:CDS 30.0%
!!! CGTGAAAAGTTTTATTGTCA+TGG - chr7.2:41653255-41653274 MS.gene46093:CDS 30.0%
AAAACATCAACGAAATCGCA+TGG + chr7.2:41652468-41652487 None:intergenic 35.0%
AAAGCACACTTGTTCTGTAA+AGG - chr7.2:41652674-41652693 MS.gene46093:CDS 35.0%
AACTCCTTTGAATGACTTGA+AGG - chr7.2:41653464-41653483 MS.gene46093:CDS 35.0%
ACAATGGGATCTGTTACAAT+TGG - chr7.2:41652261-41652280 MS.gene46093:intron 35.0%
CATCCAAATCAAGTATGCTA+TGG + chr7.2:41653131-41653150 None:intergenic 35.0%
CTGAAAACACAATTCTGCAA+TGG - chr7.2:41652549-41652568 MS.gene46093:CDS 35.0%
GGGAAAATATTGTATGCTCA+AGG - chr7.2:41652997-41653016 MS.gene46093:CDS 35.0%
GTACCATAGCATACTTGATT+TGG - chr7.2:41653125-41653144 MS.gene46093:intron 35.0%
GTTTCTTACATGTCTGTTGA+TGG - chr7.2:41653345-41653364 MS.gene46093:CDS 35.0%
TAACAATCTCTACCAAAGTG+TGG - chr7.2:41652290-41652309 MS.gene46093:intron 35.0%
TGTCAATGTCACAAAGGAAA+AGG - chr7.2:41652704-41652723 MS.gene46093:CDS 35.0%
TTGTGATGTTGAAAACACTG+AGG - chr7.2:41652933-41652952 MS.gene46093:CDS 35.0%
TTTGGAGGAAACTGTTCTTT+GGG - chr7.2:41653087-41653106 MS.gene46093:intron 35.0%
! AATCCTTGATGACAATCCAA+TGG + chr7.2:41652908-41652927 None:intergenic 35.0%
! TAGGAGCAATAGTTTGCAAT+AGG + chr7.2:41653579-41653598 None:intergenic 35.0%
! TGTGCTTTATTCCAAAACTC+TGG + chr7.2:41652662-41652681 None:intergenic 35.0%
! TGTTTTCAGAGGAACTACTT+GGG + chr7.2:41652538-41652557 None:intergenic 35.0%
! TTGCAGAATTGTGTTTTCAG+AGG + chr7.2:41652549-41652568 None:intergenic 35.0%
! TTGGTGATTGAAGAACAAGA+GGG - chr7.2:41653687-41653706 MS.gene46093:CDS 35.0%
! TTTATTTGCTGAAGCAGGAA+AGG - chr7.2:41652164-41652183 MS.gene46093:CDS 35.0%
! TTTCTGACTTTTCCTTTAGG+AGG - chr7.2:41653051-41653070 MS.gene46093:intron 35.0%
!! TCTGTTGATGGTTATGTGAA+GGG - chr7.2:41653357-41653376 MS.gene46093:CDS 35.0%
!! TTCTAGTTCTACTCAATCAG+AGG - chr7.2:41652095-41652114 MS.gene46093:CDS 35.0%
!! TTTTTGAAGAAGTCGTGTGA+TGG + chr7.2:41652235-41652254 None:intergenic 35.0%
AAGAGTCATGCCAAACTCAA+TGG - chr7.2:41652614-41652633 MS.gene46093:CDS 40.0%
ATACGTACAACTCCTCCTAA+AGG + chr7.2:41653066-41653085 None:intergenic 40.0%
ATTTGTAAGAGCTGCTGTTG+AGG + chr7.2:41653655-41653674 None:intergenic 40.0%
CAACCATTGGATTGTCATCA+AGG - chr7.2:41652902-41652921 MS.gene46093:CDS 40.0%
CTCATTTATCCCCACAGTTT+GGG - chr7.2:41653199-41653218 MS.gene46093:CDS 40.0%
GAAGTACGTCTGCAAAATCA+TGG + chr7.2:41653026-41653045 None:intergenic 40.0%
GCAGTGTCTAAGCATATTGA+AGG - chr7.2:41653620-41653639 MS.gene46093:CDS 40.0%
GTTTGGAGGAAACTGTTCTT+TGG - chr7.2:41653086-41653105 MS.gene46093:intron 40.0%
TAATCCTCGAAGGAGTTATG+TGG + chr7.2:41652372-41652391 None:intergenic 40.0%
TCAACAGCAGCTCTTACAAA+TGG - chr7.2:41653654-41653673 MS.gene46093:CDS 40.0%
TGGTGATTGAAGAACAAGAG+GGG - chr7.2:41653688-41653707 MS.gene46093:CDS 40.0%
! CTTGATGACAATCCAATGGT+TGG + chr7.2:41652904-41652923 None:intergenic 40.0%
! CTTGGTGATTGAAGAACAAG+AGG - chr7.2:41653686-41653705 MS.gene46093:CDS 40.0%
! GTATGTGCCATTGAAACTTG+TGG - chr7.2:41652119-41652138 MS.gene46093:CDS 40.0%
! GTGTTTTCAGAGGAACTACT+TGG + chr7.2:41652539-41652558 None:intergenic 40.0%
! TACAAATGGTCTTGGACACT+TGG - chr7.2:41653668-41653687 MS.gene46093:CDS 40.0%
! TTTGGTATGCTCCAGAGTTT+TGG - chr7.2:41652648-41652667 MS.gene46093:CDS 40.0%
!! GTCTGTTGATGGTTATGTGA+AGG - chr7.2:41653356-41653375 MS.gene46093:CDS 40.0%
AGAGCTGCAATAATCCTCGA+AGG + chr7.2:41652382-41652401 None:intergenic 45.0%
AGTCGTGTGATGGTTCCAAA+TGG + chr7.2:41652225-41652244 None:intergenic 45.0%
CAAGTCATCTGCGACAACAT+GGG + chr7.2:41653391-41653410 None:intergenic 45.0%
CCAAACTGTGGGGATAAATG+AGG + chr7.2:41653201-41653220 None:intergenic 45.0%
CCTCATTTATCCCCACAGTT+TGG - chr7.2:41653198-41653217 MS.gene46093:CDS 45.0%
GCAGCTCTTACAAATGGTCT+TGG - chr7.2:41653660-41653679 MS.gene46093:CDS 45.0%
GGAGGAGTTGTACGTATGTT+TGG - chr7.2:41653069-41653088 MS.gene46093:intron 45.0%
GGAGTTGTACGTATGTTTGG+AGG - chr7.2:41653072-41653091 MS.gene46093:intron 45.0%
GGTGATTGAAGAACAAGAGG+GGG - chr7.2:41653689-41653708 MS.gene46093:CDS 45.0%
GTGATTGAAGAACAAGAGGG+GGG - chr7.2:41653690-41653709 MS.gene46093:CDS 45.0%
TGGTCCACCACAAGTTTCAA+TGG + chr7.2:41652129-41652148 None:intergenic 45.0%
TGTCAAGATCTGCCACACTT+TGG + chr7.2:41652305-41652324 None:intergenic 45.0%
! AATGTCCTGATGACGACTGT+TGG - chr7.2:41652502-41652521 MS.gene46093:CDS 45.0%
! GTCGTCATCAGGACATTTTG+TGG + chr7.2:41652499-41652518 None:intergenic 45.0%
! TCTGCGACAACATGGGTTTT+TGG + chr7.2:41653384-41653403 None:intergenic 45.0%
! TGTGCCATTGAAACTTGTGG+TGG - chr7.2:41652122-41652141 MS.gene46093:CDS 45.0%
!! GGATCTTCTGAAGTGCTCAT+TGG - chr7.2:41652837-41652856 MS.gene46093:CDS 45.0%
ATTCGTCAGCCCAAACTGTG+GGG + chr7.2:41653211-41653230 None:intergenic 50.0%
CCAAGTCATCTGCGACAACA+TGG + chr7.2:41653392-41653411 None:intergenic 50.0%
CCATGTTGTCGCAGATGACT+TGG - chr7.2:41653389-41653408 MS.gene46093:CDS 50.0%
GATTCGTCAGCCCAAACTGT+GGG + chr7.2:41653212-41653231 None:intergenic 50.0%
GCAACCACATAACTCCTTCG+AGG - chr7.2:41652365-41652384 MS.gene46093:CDS 50.0%
TGATTCGTCAGCCCAAACTG+TGG + chr7.2:41653213-41653232 None:intergenic 50.0%
! CCTGATGACGACTGTTGGTT+CGG - chr7.2:41652507-41652526 MS.gene46093:CDS 50.0%
! TTTTCACGTCGCCGACGAAT+TGG + chr7.2:41653243-41653262 None:intergenic 50.0%
CCGAACCAACAGTCGTCATC+AGG + chr7.2:41652510-41652529 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 41652090 41653764 41652090 ID=MS.gene46093
chr7.2 mRNA 41652090 41653764 41652090 ID=MS.gene46093.t1;Parent=MS.gene46093
chr7.2 exon 41653129 41653764 41653129 ID=MS.gene46093.t1.exon1;Parent=MS.gene46093.t1
chr7.2 CDS 41653129 41653764 41653129 ID=cds.MS.gene46093.t1;Parent=MS.gene46093.t1
chr7.2 exon 41652339 41653022 41652339 ID=MS.gene46093.t1.exon2;Parent=MS.gene46093.t1
chr7.2 CDS 41652339 41653022 41652339 ID=cds.MS.gene46093.t1;Parent=MS.gene46093.t1
chr7.2 exon 41652090 41652230 41652090 ID=MS.gene46093.t1.exon3;Parent=MS.gene46093.t1
chr7.2 CDS 41652090 41652230 41652090 ID=cds.MS.gene46093.t1;Parent=MS.gene46093.t1
Gene Sequence

>MS.gene46093

ATGACTTCTAGTTCTACTCAATCAGAGGTGTATGTGCCATTGAAACTTGTGGTGGACCAAGAGAGCAACAAAGTTTTATTTGCTGAAGCAGGAAAGGACTTTGTTGATGTTCTATTTAGCTTCTTAACATTACCATTTGGAACCATCACACGACTTCTTCAAAAAGAGTCAACAATGGGATCTGTTACAATTGGTTGTATTAACAATCTCTACCAAAGTGTGGCAGATCTTGACAAAGATTGTATGAAAGAAGAGAAAGGCAAAGAAATGTTATTGCAACCACATAACTCCTTCGAGGATTATTGCAGCTCTCTTAAACTAAACATTGATGACACAGAGCCCACAAAGTATTACAAGTGTATTGAGAGAGTTTTTCCATGCGATTTCGTTGATGTTTTGAGCACTTCCACAAAATGTCCTGATGACGACTGTTGGTTCGGAAAAACCCAAGTAGTTCCTCTGAAAACACAATTCTGCAATGGATTTGTTAAAGATGGTGCAACTTTTGTTATTACTGATGATCTAAGAGTCATGCCAAACTCAATGGATATTACAAGCTTTGGTATGCTCCAGAGTTTTGGAATAAAGCACACTTGTTCTGTAAAGGAAATGATTGTCAATGTCACAAAGGAAAAGGTTTTCTATTTACTATTTCGTGCTCTTTATTTATTTCTAAATGCAGCACTTTTTTTTTCTTCAATATTTCCTTTTTGTTTGATTTGTTTAATATTATTCTATATAGGTACTGGATCTTCTGAAGTGCTCATTGGTTTCTAAGTCAACTTTGACTGATTTGTTTTTAAGAATGAAACCAACCATTGGATTGTCATCAAGGATTTTCTGTTGTGATGTTGAAAACACTGAGGACATTCAATTCACAATTAAGCTGGTTATAAGAAAATCAGATGGGAAAATATTGTATGCTCAAGGGAGCCATGATTTTGCAGACGTACTTCTAAGTTTTCTGACTTTTCCTTTAGGAGGAGTTGTACGTATGTTTGGAGGAAACTGTTCTTTGGGCAGTATTGATGCTTTGTACCATAGCATACTTGATTTGGATGAAAACAAATATTTTGTGACAAAAGAAGCCAAGAATAGAATTGTTGATCCTCATTTATCCCCACAGTTTGGGCTGACGAATCAGATTTTTCCAATTCGTCGGCGACGTGAAAAGTTTTATTGTCATGGCAATTCTTCCATAACTTGTGAAAAGATAGATTATTTTGATTGTACTGATGAAACAGTTAATAATATCGTTTCTTACATGTCTGTTGATGGTTATGTGAAGGGACCAAAAACCCATGTTGTCGCAGATGACTTGGTTTTAAAAGAGTCGTCTCCAACTTCAGTTTTACATTTAATCAACCATTTTCAAACTCCTTTGAATGACTTGAAGGAAAAGGTTATCAACATTGGTCTTAAAGAGGTGTGTGATAGTAATGCCTGTATAGACTCGATTTTCAAATTTTTGTGCTTCTGTGTAATGCCTATTGCAAACTATTGCTCCTATTAACTTGTTATTTTTCTTGTGCAGTGTCTAAGCATATTGAAGGCATCTTTGACCTCAACAGCAGCTCTTACAAATGGTCTTGGACACTTGGTGATTGAAGAACAAGAGGGGGGATCTGCCAACTTACAAAGATCTGTTAACAAAGATCTGTTTCATTTAATTTAA
Protein sequence

>MS.gene46093.t1

MTSSSTQSEVYVPLKLVVDQESNKVLFAEAGKDFVDVLFSFLTLPFGTITRLLQKESTMGSVTIGCINNLYQSVADLDKDCMKEEKGKEMLLQPHNSFEDYCSSLKLNIDDTEPTKYYKCIERVFPCDFVDVLSTSTKCPDDDCWFGKTQVVPLKTQFCNGFVKDGATFVITDDLRVMPNSMDITSFGMLQSFGIKHTCSVKEMIVNVTKEKVLDLLKCSLVSKSTLTDLFLRMKPTIGLSSRIFCCDVENTEDIQFTIKLVIRKSDGKILYAQGSHDFADVLLSFLTFPLGGVVRMFGGNCSLGSIDALYHSILDLDENKYFVTKEAKNRIVDPHLSPQFGLTNQIFPIRRRREKFYCHGNSSITCEKIDYFDCTDETVNNIVSYMSVDGYVKGPKTHVVADDLVLKESSPTSVLHLINHFQTPLNDLKEKVINIGLKECLSILKASLTSTAALTNGLGHLVIEEQEGGSANLQRSVNKDLFHLI