AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73306

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73306.t1 MTR_4g017830 89.286 532 54 2 1 530 1 531 0.0 951
MS.gene73306.t1 MTR_4g019340 73.931 491 93 6 11 490 37 503 0.0 700
MS.gene73306.t1 MTR_4g017440 67.589 506 152 5 7 506 9 508 0.0 664
MS.gene73306.t1 MTR_4g017410 63.985 522 146 9 1 509 1 493 0.0 624
MS.gene73306.t1 MTR_4g017470 62.934 518 144 6 1 509 1 479 0.0 610
MS.gene73306.t1 MTR_4g017550 65.525 467 145 8 39 500 18 473 0.0 579
MS.gene73306.t1 MTR_4g017550 29.804 255 131 11 6 239 242 469 1.39e-14 76.6
MS.gene73306.t1 MTR_4g017610 58.233 498 183 7 1 496 1 475 0.0 542
MS.gene73306.t1 MTR_4g019310 41.300 523 264 17 1 506 1 497 9.86e-114 346
MS.gene73306.t1 MTR_7g066340 35.294 527 262 14 1 511 1 464 8.08e-85 271
MS.gene73306.t1 MTR_7g066260 34.972 529 271 15 4 516 7 478 4.11e-82 264
MS.gene73306.t1 MTR_7g066570 35.824 522 263 18 1 496 1 476 4.20e-78 256
MS.gene73306.t1 MTR_7g066350 34.064 502 257 13 8 496 5 445 1.02e-74 244
MS.gene73306.t1 MTR_7g066350 27.969 261 138 10 268 509 9 238 1.29e-14 76.6
MS.gene73306.t1 MTR_7g058710 31.879 527 294 13 1 506 1 483 5.06e-72 238
MS.gene73306.t1 MTR_7g066430 35.756 509 282 14 13 502 5 487 4.68e-71 236
MS.gene73306.t1 MTR_7g066410 35.564 523 281 18 13 500 11 512 5.26e-71 236
MS.gene73306.t1 MTR_7g066410 26.613 248 153 6 5 239 277 508 1.44e-11 67.4
MS.gene73306.t1 MTR_7g066400 33.992 506 251 15 1 496 1 433 1.70e-69 230
MS.gene73306.t1 MTR_7g012680 33.398 518 258 15 4 506 6 451 8.78e-67 223
MS.gene73306.t1 MTR_7g066360 34.476 525 261 18 2 511 4 460 9.61e-65 218
MS.gene73306.t1 MTR_1g041315 32.411 506 259 16 3 484 5 451 1.57e-63 215
MS.gene73306.t1 MTR_7g062280 32.331 532 293 18 1 506 1 491 1.30e-62 213
MS.gene73306.t1 MTR_7g063900 33.398 518 291 18 1 500 1 482 1.71e-62 213
MS.gene73306.t1 MTR_7g063660 32.046 518 299 17 1 506 1 477 1.45e-61 210
MS.gene73306.t1 MTR_7g062300 31.915 517 289 17 1 499 1 472 1.25e-59 204
MS.gene73306.t1 MTR_7g066580 31.048 496 266 17 18 496 1 437 3.26e-58 200
MS.gene73306.t1 MTR_7g063880 32.108 517 291 21 1 506 1 468 7.62e-58 200
MS.gene73306.t1 MTR_7g066290 32.031 512 248 17 3 499 6 432 2.73e-56 194
MS.gene73306.t1 MTR_7g063840 30.443 519 302 16 1 506 1 473 3.16e-56 196
MS.gene73306.t1 MTR_7g066310 29.435 513 222 14 13 511 8 394 8.61e-53 184
MS.gene73306.t1 MTR_7g063820 31.081 518 311 14 1 506 1 484 6.00e-52 184
MS.gene73306.t1 MTR_7g063890 31.021 519 310 17 4 507 20 505 9.76e-52 184
MS.gene73306.t1 MTR_4g019240 74.797 123 27 3 1 121 1 121 7.14e-51 172
MS.gene73306.t1 MTR_4g019240 78.261 69 15 0 458 526 112 180 3.84e-25 102
MS.gene73306.t1 MTR_7g063830 33.247 385 216 10 1 370 1 359 1.34e-50 179
MS.gene73306.t1 MTR_7g063920 29.020 510 284 14 1 506 1 436 4.83e-48 172
MS.gene73306.t1 MTR_3g065200 28.630 489 265 16 13 494 4 415 2.05e-44 163
MS.gene73306.t1 MTR_2g029400 28.601 486 250 10 8 488 10 403 2.29e-44 162
MS.gene73306.t1 MTR_7g066480 33.002 503 224 19 13 500 17 421 2.44e-44 162
MS.gene73306.t1 MTR_7g063670 29.825 513 294 16 1 506 4 457 1.73e-43 160
MS.gene73306.t1 MTR_3g007740 30.214 513 274 19 1 500 1 442 1.34e-42 158
MS.gene73306.t1 MTR_7g066280 29.773 440 244 14 98 511 1 401 1.25e-40 152
MS.gene73306.t1 MTR_7g058700 32.113 355 167 12 24 351 531 838 6.75e-40 155
MS.gene73306.t1 MTR_7g066490 30.769 494 233 16 13 500 17 407 2.74e-39 148
MS.gene73306.t1 MTR_7g066680 30.794 315 163 7 220 496 37 334 1.06e-26 111
MS.gene73306.t1 MTR_7g100420 34.507 284 155 10 220 496 134 393 3.43e-25 108
MS.gene73306.t1 MTR_7g063720 30.645 248 136 7 267 511 22 236 3.26e-24 101
MS.gene73306.t1 MTR_1g014060 35.047 214 115 8 21 226 9 206 1.12e-23 103
MS.gene73306.t1 MTR_1g014060 33.491 212 107 6 298 506 210 390 1.73e-18 87.8
MS.gene73306.t1 MTR_8g445860 30.992 242 136 5 265 494 10 232 2.28e-23 99.4
MS.gene73306.t1 MTR_8g445860 31.452 248 145 8 1 241 7 236 2.29e-20 90.9
MS.gene73306.t1 MTR_8g023240 23.483 511 299 17 6 488 31 477 6.91e-22 99.8
MS.gene73306.t1 MTR_1g115440 31.746 252 146 9 1 241 1 237 1.27e-21 94.4
MS.gene73306.t1 MTR_1g115440 30.932 236 141 6 268 494 11 233 2.75e-19 87.8
MS.gene73306.t1 MTR_4g019350 49.000 100 39 2 326 424 1 89 3.25e-21 88.6
MS.gene73306.t1 MTR_7g062270 36.585 205 102 11 1 196 1 186 5.93e-21 95.5
MS.gene73306.t1 MTR_7g062270 30.890 191 103 7 272 455 14 182 2.96e-13 72.0
MS.gene73306.t1 MTR_0150s0010 31.120 241 134 7 268 494 10 232 6.25e-20 89.4
MS.gene73306.t1 MTR_0150s0010 31.496 254 143 10 1 241 1 236 4.44e-19 87.0
MS.gene73306.t1 MTR_7g063850 27.778 252 148 7 264 506 62 288 2.48e-19 89.0
MS.gene73306.t1 MTR_1g115450 45.122 82 43 1 265 344 4 85 9.97e-15 71.6
MS.gene73306.t1 MTR_1g115450 35.200 125 64 3 1 125 1 108 2.74e-12 64.7
MS.gene73306.t1 MTR_1g115455 35.714 140 69 5 1 135 1 124 1.00e-14 74.3
MS.gene73306.t1 MTR_1g115455 26.891 238 150 7 265 494 6 227 3.51e-13 69.7
MS.gene73306.t1 MTR_6g006800 57.895 57 16 1 3 59 2 50 1.92e-13 65.9
MS.gene73306.t1 MTR_0150s0030 36.538 104 57 2 265 365 5 102 4.27e-13 68.9
MS.gene73306.t1 MTR_0150s0030 36.082 97 51 1 13 109 9 94 1.66e-11 64.3
MS.gene73306.t1 MTR_8g445910 37.500 104 56 2 265 365 5 102 6.63e-13 69.3
MS.gene73306.t1 MTR_8g445920 48.387 62 32 0 268 329 10 71 6.74e-13 65.5
MS.gene73306.t1 MTR_8g044890 48.387 62 32 0 268 329 10 71 6.74e-13 65.5
MS.gene73306.t1 MTR_4g019330 43.529 85 46 2 424 506 104 188 4.08e-12 65.5
MS.gene73306.t1 MTR_8g044880 40.964 83 46 1 265 344 5 87 6.96e-12 66.6
MS.gene73306.t1 MTR_1g115470 42.683 82 45 1 265 344 3 84 1.22e-11 67.4
MS.gene73306.t1 MTR_1g115470 42.857 112 49 5 15 124 9 107 3.70e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73306.t1 AT5G01120 32.000 500 308 11 9 496 6 485 1.59e-66 224
MS.gene73306.t1 AT5G43240 33.597 506 288 15 13 496 10 489 3.42e-65 220
MS.gene73306.t1 AT5G43240 33.597 506 288 15 13 496 10 489 3.42e-65 220
MS.gene73306.t1 AT5G43240 33.597 506 288 15 13 496 10 489 3.42e-65 220
MS.gene73306.t1 AT5G01130 33.594 512 269 19 4 506 2 451 8.13e-63 213
MS.gene73306.t1 AT3G09140 32.308 520 284 17 9 496 6 489 3.39e-60 207
MS.gene73306.t1 AT5G01140 31.467 518 286 19 2 510 4 461 2.17e-55 193
MS.gene73306.t1 AT5G01150 31.758 529 297 17 4 509 2 489 2.90e-55 194
MS.gene73306.t1 AT3G09140 30.657 548 284 18 9 496 6 517 5.44e-55 194
MS.gene73306.t1 AT3G09110 36.254 331 183 10 9 329 6 318 1.87e-48 171
MS.gene73306.t1 AT5G37320 30.039 516 296 18 7 498 3 477 3.56e-48 174
MS.gene73306.t1 AT3G09120 34.462 325 188 9 9 322 3 313 3.98e-45 161
MS.gene73306.t1 AT3G09120 29.915 234 147 8 268 494 6 229 5.32e-15 76.6
MS.gene73306.t1 AT5G43240 32.081 346 207 8 162 496 17 345 1.30e-36 139

Find 106 sgRNAs with CRISPR-Local

Find 278 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGTCTTTGTTAAGGAAAA+TGG 0.178320 4.1:-79775452 MS.gene73306:CDS
CCACCCACTACTTGTTATTA+TGG 0.206586 4.1:-79773007 MS.gene73306:CDS
TTTGACTTGTTTGAGGATCT+TGG 0.230164 4.1:+79772851 None:intergenic
GTCAAATTTGATTCTTGTTT+TGG 0.240264 4.1:+79772252 None:intergenic
TAATAAACAACCTAAGAAAT+TGG 0.242822 4.1:-79775507 MS.gene73306:CDS
GTGGAACGGTTGATGGAATT+AGG 0.243562 4.1:-79775371 MS.gene73306:CDS
CTCTGACTGCTGATGCAAAT+TGG 0.265259 4.1:+79773341 None:intergenic
ACTTTCCTTGCAATACCATT+AGG 0.290827 4.1:-79773208 MS.gene73306:CDS
GGAATGTTGAGGAGCTGTTT+TGG 0.298372 4.1:+79773040 None:intergenic
TCCTCAGAATCCAATTTCTT+AGG 0.305487 4.1:+79775497 None:intergenic
CAGGGGAATGAGGTTCAAAA+TGG 0.309879 4.1:-79775473 MS.gene73306:CDS
CTTTCCTTGCAATACCATTA+GGG 0.321931 4.1:-79773207 MS.gene73306:CDS
AGGCGTGATTTCTAAGAAAA+AGG 0.330083 4.1:-79772912 MS.gene73306:CDS
CCCTCACTCCAAACGATGTT+TGG 0.334877 4.1:-79775706 MS.gene73306:CDS
TTCAGATTTGAGTAAGTTAG+AGG 0.335387 4.1:-79775345 MS.gene73306:CDS
AGGGTCTGTTGTAAAGCTTT+TGG 0.341615 4.1:-79773188 MS.gene73306:CDS
GAAATTGGATTCTGAGGATC+AGG 0.368866 4.1:-79775492 MS.gene73306:CDS
GGGATTCAATAGCATTTGTT+TGG 0.370299 4.1:+79775670 None:intergenic
ATAATTCAGGCTTCTGCTAT+AGG 0.376860 4.1:+79772183 None:intergenic
TCAAAATGGGGTCTTTGTTA+AGG 0.377316 4.1:-79775459 MS.gene73306:CDS
AAAGCAACATTATATGCTAT+TGG 0.383153 4.1:-79772803 MS.gene73306:CDS
CATCGTTGTTTGTGGTTAAG+AGG 0.384127 4.1:+79775798 None:intergenic
ACTGCTGATGCAAATTGGTT+TGG 0.395154 4.1:+79773346 None:intergenic
TTTCTTAGGTTGTTTATTAG+TGG 0.401625 4.1:+79775511 None:intergenic
TTCTTAGGTTGTTTATTAGT+GGG 0.402714 4.1:+79775512 None:intergenic
ATAGCATTTGTTTGGAGAAA+GGG 0.411175 4.1:+79775678 None:intergenic
TAGTGTTCAGCGACTATAAT+GGG 0.412179 4.1:-79772967 MS.gene73306:CDS
GGGTTGTTCCAAACATCGTT+TGG 0.424240 4.1:+79775698 None:intergenic
AATAGCATTTGTTTGGAGAA+AGG 0.428428 4.1:+79775677 None:intergenic
CCTGGCCTATCACCACAGTT+TGG 0.428668 4.1:-79773067 MS.gene73306:CDS
CTAGTGTTCAGCGACTATAA+TGG 0.430095 4.1:-79772968 MS.gene73306:CDS
TGGAACGGTTGATGGAATTA+GGG 0.433049 4.1:-79775370 MS.gene73306:CDS
CACTACTTGTTATTATGGTA+CGG 0.433352 4.1:-79773002 MS.gene73306:CDS
TCCAGTGCAGTCAAGGCTCT+TGG 0.433952 4.1:+79772875 None:intergenic
GACCTCCGTGGAACGGTTGA+TGG 0.436015 4.1:-79775378 MS.gene73306:CDS
CAGAATCTTGATTGTACTTG+TGG 0.438965 4.1:-79775539 MS.gene73306:CDS
GGGTCTTTGTTAAGGAAAAT+GGG 0.450146 4.1:-79775451 MS.gene73306:CDS
GTAGTGGGTGGTTGTACATC+AGG 0.459977 4.1:+79773019 None:intergenic
ACTACTTGTTATTATGGTAC+GGG 0.460909 4.1:-79773001 MS.gene73306:CDS
CCAAACATCGTTTGGAGTGA+GGG 0.462496 4.1:+79775706 None:intergenic
CGCTCGGTGTTACTCAATCC+TGG 0.464266 4.1:-79773085 MS.gene73306:CDS
AGGGGAATGAGGTTCAAAAT+GGG 0.466903 4.1:-79775472 MS.gene73306:CDS
ATGCAAGAATTATCAGAAAG+TGG 0.472857 4.1:+79772761 None:intergenic
GCTGATGCAAATTGGTTTGG+TGG 0.474643 4.1:+79773349 None:intergenic
TTGTTGATCATCGTTGTTTG+TGG 0.478260 4.1:+79775790 None:intergenic
GAGAGGTTAAGATGTATTTG+AGG 0.479701 4.1:+79773425 None:intergenic
GACAACCAAACTGTGGTGAT+AGG 0.480793 4.1:+79773062 None:intergenic
TTGCATCAGCAGTCAGAGTA+AGG 0.490231 4.1:-79773336 MS.gene73306:CDS
AATCATAGAAGATAAGATAG+AGG 0.500673 4.1:-79772936 MS.gene73306:CDS
GTACAAGACTGTTGAGACCT+TGG 0.502138 4.1:-79773131 MS.gene73306:CDS
TAGTCGCTGAACACTAGCTT+TGG 0.516019 4.1:+79772974 None:intergenic
CCTTCATTTCCAGATCATCA+AGG 0.519540 4.1:+79772711 None:intergenic
TTCAAAATTGTATTTGTCAG+AGG 0.520812 4.1:+79773397 None:intergenic
TCAGCATCATCATCATTCCT+TGG 0.525328 4.1:-79775761 MS.gene73306:CDS
ACCTAAGAAATTGGATTCTG+AGG 0.529464 4.1:-79775498 MS.gene73306:CDS
GTTTGGAGTGAGGGTTTGTA+CGG 0.532495 4.1:+79775715 None:intergenic
CTTGTGCACGGACTCGCGCT+CGG 0.532741 4.1:-79773101 MS.gene73306:CDS
TTCTGAGGATCAGGGGAATG+AGG 0.533361 4.1:-79775483 MS.gene73306:CDS
TGGTGGCAAGTGGAAGAGAA+AGG 0.533657 4.1:+79775828 None:intergenic
TGTGGTTAAGAGGCGAATGA+TGG 0.534640 4.1:+79775808 None:intergenic
AGCTTTACAACAGACCCTAA+TGG 0.534906 4.1:+79773193 None:intergenic
CAAAGTATGTACAAACTAGC+AGG 0.535058 4.1:-79772227 MS.gene73306:CDS
ACCAAGAGCCTTGACTGCAC+TGG 0.536046 4.1:-79772876 MS.gene73306:CDS
TCTTGGATCCAGTGCAGTCA+AGG 0.536451 4.1:+79772868 None:intergenic
TCAAAATTTACACTGACTAG+TGG 0.539589 4.1:-79772297 MS.gene73306:CDS
CTTCATTTCCAGATCATCAA+GGG 0.555681 4.1:+79772712 None:intergenic
AGGTTAAGATGTATTTGAGG+AGG 0.555762 4.1:+79773428 None:intergenic
CTTGGACTCTTCCTTGTGCA+CGG 0.556068 4.1:-79773113 MS.gene73306:CDS
GAGGAAGTCACGCATAACAT+TGG 0.558134 4.1:-79775326 MS.gene73306:CDS
CGAGCGCGAGTCCGTGCACA+AGG 0.559536 4.1:+79773102 None:intergenic
CCTTGATGATCTGGAAATGA+AGG 0.561579 4.1:-79772711 MS.gene73306:CDS
CAGGCTTGATGCACTTGCAA+AGG 0.566715 4.1:-79772208 MS.gene73306:CDS
CTTTGATGACCTCCGTGGAA+CGG 0.568765 4.1:-79775385 MS.gene73306:CDS
TCCAAACATCGTTTGGAGTG+AGG 0.570799 4.1:+79775705 None:intergenic
CAAGTCAAAAGAAGATGCTG+TGG 0.573281 4.1:-79772837 MS.gene73306:CDS
ATCATAGAAGATAAGATAGA+GGG 0.577570 4.1:-79772935 MS.gene73306:CDS
CCAAACTGTGGTGATAGGCC+AGG 0.582098 4.1:+79773067 None:intergenic
AGGCGAATGATGGTGGCAAG+TGG 0.611394 4.1:+79775818 None:intergenic
CGTGCACAAGGAAGAGTCCA+AGG 0.613164 4.1:+79773114 None:intergenic
CGTACCATAATAACAAGTAG+TGG 0.614909 4.1:+79773003 None:intergenic
AAATTGGATTCTGAGGATCA+GGG 0.615921 4.1:-79775491 MS.gene73306:CDS
CTACTTGTTATTATGGTACG+GGG 0.616202 4.1:-79773000 MS.gene73306:CDS
GAAATGAAGGTGATAAGCAT+TGG 0.620399 4.1:-79772698 MS.gene73306:CDS
AAGTCAAAAGAAGATGCTGT+GGG 0.623804 4.1:-79772836 MS.gene73306:CDS
AATTGGATTCTGAGGATCAG+GGG 0.634490 4.1:-79775490 MS.gene73306:CDS
TAATTCCATCAACCGTTCCA+CGG 0.636089 4.1:+79775373 None:intergenic
TTGTTCTTTGATGACCTCCG+TGG 0.636160 4.1:-79775390 MS.gene73306:CDS
TTCATTTCCAGATCATCAAG+GGG 0.637868 4.1:+79772713 None:intergenic
GATAAGCATTGGTGAAGCTG+AGG 0.638424 4.1:-79772687 MS.gene73306:intron
GGGTTTGTACGGTTTCGTAG+AGG 0.642583 4.1:+79775726 None:intergenic
GTACCATAATAACAAGTAGT+GGG 0.648516 4.1:+79773004 None:intergenic
GCATAACATTGGAAAGCAAG+AGG 0.649188 4.1:-79775315 MS.gene73306:intron
ATAGAAGATAAGATAGAGGG+AGG 0.659713 4.1:-79772932 MS.gene73306:CDS
AAGGAATGATGATGATGCTG+AGG 0.666151 4.1:+79775763 None:intergenic
TTGATGTGATGGAAGCTGCA+AGG 0.667916 4.1:+79772316 None:intergenic
ACGGAGGTCATCAAAGAACA+AGG 0.673460 4.1:+79775392 None:intergenic
ATTTGTCAGAGGCTCATGAG+AGG 0.675408 4.1:+79773408 None:intergenic
CCATAATAACAAGTAGTGGG+TGG 0.678221 4.1:+79773007 None:intergenic
CAGACCCTAATGGTATTGCA+AGG 0.678878 4.1:+79773203 None:intergenic
TTCATGCACAGTGATTCACA+TGG 0.681323 4.1:+79775641 None:intergenic
GGGGAATGAGGTTCAAAATG+GGG 0.691714 4.1:-79775471 MS.gene73306:CDS
GTTGTACATCAGGAATGTTG+AGG 0.692196 4.1:+79773029 None:intergenic
GGTTAAGAGGCGAATGATGG+TGG 0.700313 4.1:+79775811 None:intergenic
TTCCATCAACCGTTCCACGG+AGG 0.726289 4.1:+79775376 None:intergenic
TCATTTCCAGATCATCAAGG+GGG 0.747642 4.1:+79772714 None:intergenic
ATGTGATGGAAGCTGCAAGG+AGG 0.769117 4.1:+79772319 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATTTTAAATAGGTTATAT+TGG - chr4.1:79774618-79774637 MS.gene73306:intron 10.0%
!! TTAAAAAACATTCACAATTT+GGG - chr4.1:79774161-79774180 MS.gene73306:intron 15.0%
!! TTTAAAAAACATTCACAATT+TGG - chr4.1:79774160-79774179 MS.gene73306:intron 15.0%
!!! TAGTGAAAGATATTTTAAAT+AGG - chr4.1:79774609-79774628 MS.gene73306:intron 15.0%
!!! TGTGTATTTTGTTTTATTTT+TGG - chr4.1:79772889-79772908 MS.gene73306:CDS 15.0%
!! AAGTTAGTAAATGAGTTAAA+AGG - chr4.1:79774433-79774452 MS.gene73306:intron 20.0%
!! GAGAGAAAAAATAGAAATTA+GGG - chr4.1:79773360-79773379 MS.gene73306:CDS 20.0%
!! TAAAAAAACACAGATTTGTA+AGG + chr4.1:79773164-79773183 None:intergenic 20.0%
!! TAATAAACAACCTAAGAAAT+TGG - chr4.1:79772634-79772653 MS.gene73306:intron 20.0%
!! TGAGAGAAAAAATAGAAATT+AGG - chr4.1:79773359-79773378 MS.gene73306:CDS 20.0%
!!! AGATGATAATTTTTACTGAT+TGG - chr4.1:79774017-79774036 MS.gene73306:intron 20.0%
!!! ATGTTACTTACAAGTTATAT+TGG - chr4.1:79774277-79774296 MS.gene73306:intron 20.0%
!!! GGAAAAAGAAGAATTTTATT+AGG + chr4.1:79773920-79773939 None:intergenic 20.0%
!!! TTGTTTTATTTTTGGAAACT+CGG - chr4.1:79772897-79772916 MS.gene73306:CDS 20.0%
! AAAAGAAAGTGATAAACTCT+AGG + chr4.1:79773867-79773886 None:intergenic 25.0%
! AAAGAATAGAAAGGAAAGTA+AGG - chr4.1:79773727-79773746 MS.gene73306:intron 25.0%
! AAAGCAACATTATATGCTAT+TGG - chr4.1:79775338-79775357 MS.gene73306:CDS 25.0%
! AACATGAGTATCAAAATAAC+AGG + chr4.1:79773542-79773561 None:intergenic 25.0%
! AACTTGTAAGTAACATTCAA+AGG + chr4.1:79774273-79774292 None:intergenic 25.0%
! AATCATAGAAGATAAGATAG+AGG - chr4.1:79775205-79775224 MS.gene73306:intron 25.0%
! ACGTTTACCCTTTAAATTTA+TGG + chr4.1:79774138-79774157 None:intergenic 25.0%
! ATCATAGAAGATAAGATAGA+GGG - chr4.1:79775206-79775225 MS.gene73306:intron 25.0%
! ATGAAGGAGAAATTTCTATT+TGG + chr4.1:79774059-79774078 None:intergenic 25.0%
! ATGCAAGATATTAAACCAAA+CGG + chr4.1:79774565-79774584 None:intergenic 25.0%
! CTAGTTGTTATACTTAGTTA+TGG - chr4.1:79774205-79774224 MS.gene73306:intron 25.0%
! TAATGATTCATAATTACCCA+AGG + chr4.1:79773285-79773304 None:intergenic 25.0%
! TGGGTAATTATGAATCATTA+GGG - chr4.1:79773285-79773304 MS.gene73306:CDS 25.0%
! TGGTGTACCATAAATTTAAA+GGG - chr4.1:79774128-79774147 MS.gene73306:intron 25.0%
! TTCAAAATTGTATTTGTCAG+AGG + chr4.1:79774747-79774766 None:intergenic 25.0%
! TTGGGTAATTATGAATCATT+AGG - chr4.1:79773284-79773303 MS.gene73306:CDS 25.0%
!! CTGTCTATTAAAATTTTCAG+TGG + chr4.1:79772230-79772249 None:intergenic 25.0%
!! CTTGTAACTTTTATACATTC+AGG - chr4.1:79775692-79775711 MS.gene73306:CDS 25.0%
!! GTATCAAAATGCTACTTAAA+CGG - chr4.1:79773603-79773622 MS.gene73306:intron 25.0%
!! TTCTTAGGTTGTTTATTAGT+GGG + chr4.1:79772632-79772651 None:intergenic 25.0%
!! TTTCTTAGGTTGTTTATTAG+TGG + chr4.1:79772633-79772652 None:intergenic 25.0%
!!! ATCTGTGTTTTTTTAGCTTT+TGG - chr4.1:79773169-79773188 MS.gene73306:CDS 25.0%
!!! GTCAAATTTGATTCTTGTTT+TGG + chr4.1:79775892-79775911 None:intergenic 25.0%
!!! GTTTTTCTATTTTAGAGTAG+TGG - chr4.1:79773130-79773149 MS.gene73306:CDS 25.0%
!!! TTTCTTTTGTTTAGTCAGTT+TGG + chr4.1:79775658-79775677 None:intergenic 25.0%
AAAAGTTACAAGAACATGCA+TGG + chr4.1:79775684-79775703 None:intergenic 30.0%
AACCTCAAAGGGAATTAATT+GGG - chr4.1:79773988-79774007 MS.gene73306:intron 30.0%
AATAGAAAGGAAAGTAAGGA+GGG - chr4.1:79773731-79773750 MS.gene73306:intron 30.0%
AATAGCATTTGTTTGGAGAA+AGG + chr4.1:79772467-79772486 None:intergenic 30.0%
AATTTCGGCAACATTTAACA+AGG + chr4.1:79773495-79773514 None:intergenic 30.0%
ACAAACTAACATGACATCAT+GGG + chr4.1:79773389-79773408 None:intergenic 30.0%
ACTAACAGAAGACATATTCA+AGG - chr4.1:79775599-79775618 MS.gene73306:CDS 30.0%
ATAGCATTTGTTTGGAGAAA+GGG + chr4.1:79772466-79772485 None:intergenic 30.0%
ATGATTCTAAATTGCAGTTG+TGG - chr4.1:79773457-79773476 MS.gene73306:intron 30.0%
ATGCAAGAATTATCAGAAAG+TGG + chr4.1:79775383-79775402 None:intergenic 30.0%
CCATAATCCATCTGTTATAT+TGG + chr4.1:79773640-79773659 None:intergenic 30.0%
CCATGTGATAAAGAATAGAA+AGG - chr4.1:79773718-79773737 MS.gene73306:intron 30.0%
CCTTTCTATTCTTTATCACA+TGG + chr4.1:79773721-79773740 None:intergenic 30.0%
CTGGTGTACCATAAATTTAA+AGG - chr4.1:79774127-79774146 MS.gene73306:intron 30.0%
CTTTAAATTTATGGTACACC+AGG + chr4.1:79774129-79774148 None:intergenic 30.0%
GTACCATAATAACAAGTAGT+GGG + chr4.1:79775140-79775159 None:intergenic 30.0%
TAATCAATGAAAGACACGTA+CGG - chr4.1:79775629-79775648 MS.gene73306:CDS 30.0%
TACAAACTAACATGACATCA+TGG + chr4.1:79773390-79773409 None:intergenic 30.0%
TCAGTATCTGTTACATCAAA+AGG + chr4.1:79774692-79774711 None:intergenic 30.0%
TCATAGATAACTAATACCTG+TGG + chr4.1:79773583-79773602 None:intergenic 30.0%
TGAAAATGCCTATAACGATT+TGG - chr4.1:79773238-79773257 MS.gene73306:CDS 30.0%
TTAATGAATGCTCTCTTATC+AGG + chr4.1:79773692-79773711 None:intergenic 30.0%
TTCAGATTTGAGTAAGTTAG+AGG - chr4.1:79772796-79772815 MS.gene73306:CDS 30.0%
! AGTGATTCACATGGATTTTT+GGG + chr4.1:79772494-79772513 None:intergenic 30.0%
! GAATAATCTAAGGTACAAGT+GGG + chr4.1:79774087-79774106 None:intergenic 30.0%
! GTGTCTTTCATTGATTAGTT+TGG + chr4.1:79775626-79775645 None:intergenic 30.0%
! TCAAAATTTACACTGACTAG+TGG - chr4.1:79775844-79775863 MS.gene73306:CDS 30.0%
! TGAATAATCTAAGGTACAAG+TGG + chr4.1:79774088-79774107 None:intergenic 30.0%
! TGTTTGATAATCTTCCTTTG+TGG - chr4.1:79775777-79775796 MS.gene73306:CDS 30.0%
!! ACTACTTGTTATTATGGTAC+GGG - chr4.1:79775140-79775159 MS.gene73306:intron 30.0%
!! ATTTTTGGAAACTCGGTATT+CGG - chr4.1:79772904-79772923 MS.gene73306:CDS 30.0%
!! CACTACTTGTTATTATGGTA+CGG - chr4.1:79775139-79775158 MS.gene73306:intron 30.0%
!! CAGTGTAAATTTTGATGTGA+TGG + chr4.1:79775839-79775858 None:intergenic 30.0%
!! CCAATATAACAGATGGATTA+TGG - chr4.1:79773637-79773656 MS.gene73306:intron 30.0%
!! TAAGAGAGCATTCATTAAGA+AGG - chr4.1:79773694-79773713 MS.gene73306:intron 30.0%
!!! ATCTTCTTTTGACTTGTTTG+AGG + chr4.1:79775300-79775319 None:intergenic 30.0%
AACTCTATCAGAACCTCAAA+GGG - chr4.1:79773977-79773996 MS.gene73306:intron 35.0%
AAGTCAAAAGAAGATGCTGT+GGG - chr4.1:79775305-79775324 MS.gene73306:intron 35.0%
AATGTAGTAGGAGGGAATAA+GGG - chr4.1:79773787-79773806 MS.gene73306:intron 35.0%
ACACATTTAAGAACCAATGG+CGG + chr4.1:79775488-79775507 None:intergenic 35.0%
ACAGAGTAACAGAATGTAGT+AGG - chr4.1:79773775-79773794 MS.gene73306:intron 35.0%
ACCTAAGAAATTGGATTCTG+AGG - chr4.1:79772643-79772662 MS.gene73306:intron 35.0%
ACTTTCCTTGCAATACCATT+AGG - chr4.1:79774933-79774952 MS.gene73306:intron 35.0%
AGGTTAAGATGTATTTGAGG+AGG + chr4.1:79774716-79774735 None:intergenic 35.0%
AGTAACAGAATGTAGTAGGA+GGG - chr4.1:79773779-79773798 MS.gene73306:intron 35.0%
ATAGAAGATAAGATAGAGGG+AGG - chr4.1:79775209-79775228 MS.gene73306:intron 35.0%
ATAGAGTTCAACAGGACTTA+AGG + chr4.1:79773965-79773984 None:intergenic 35.0%
ATCTGTTACATCAAAAGGAC+AGG + chr4.1:79774687-79774706 None:intergenic 35.0%
CAAACTAACATGACATCATG+GGG + chr4.1:79773388-79773407 None:intergenic 35.0%
CAAAGTATGTACAAACTAGC+AGG - chr4.1:79775914-79775933 MS.gene73306:CDS 35.0%
CAGAATCTTGATTGTACTTG+TGG - chr4.1:79772602-79772621 MS.gene73306:intron 35.0%
CCTAGAGTCAAAATCATTGA+GGG - chr4.1:79773335-79773354 MS.gene73306:CDS 35.0%
CGTACCATAATAACAAGTAG+TGG + chr4.1:79775141-79775160 None:intergenic 35.0%
CTCACACATTTAAGAACCAA+TGG + chr4.1:79775491-79775510 None:intergenic 35.0%
CTTCATTTCCAGATCATCAA+GGG + chr4.1:79775432-79775451 None:intergenic 35.0%
CTTTCCTTGCAATACCATTA+GGG - chr4.1:79774934-79774953 MS.gene73306:intron 35.0%
GAAAGCGAATCACACATTTA+AGG - chr4.1:79775714-79775733 MS.gene73306:CDS 35.0%
GAAATGAAGGTGATAAGCAT+TGG - chr4.1:79775443-79775462 MS.gene73306:CDS 35.0%
GAACCTCAAAGGGAATTAAT+TGG - chr4.1:79773987-79774006 MS.gene73306:intron 35.0%
GAATAGAAAGGAAAGTAAGG+AGG - chr4.1:79773730-79773749 MS.gene73306:intron 35.0%
GAGAGGTTAAGATGTATTTG+AGG + chr4.1:79774719-79774738 None:intergenic 35.0%
GGGATTCAATAGCATTTGTT+TGG + chr4.1:79772474-79772493 None:intergenic 35.0%
GGGTCTTTGTTAAGGAAAAT+GGG - chr4.1:79772690-79772709 MS.gene73306:CDS 35.0%
GTGTCAACAATTCATGTGTT+GGG + chr4.1:79773016-79773035 None:intergenic 35.0%
GTTTGCATTTGGCATAGTAT+CGG - chr4.1:79773659-79773678 MS.gene73306:intron 35.0%
TAGAGTTCAACAGGACTTAA+GGG + chr4.1:79773964-79773983 None:intergenic 35.0%
TAGTGTTCAGCGACTATAAT+GGG - chr4.1:79775174-79775193 MS.gene73306:intron 35.0%
TCAAAATGGGGTCTTTGTTA+AGG - chr4.1:79772682-79772701 MS.gene73306:intron 35.0%
TCCTAGAGTCAAAATCATTG+AGG - chr4.1:79773334-79773353 MS.gene73306:CDS 35.0%
TCCTCAGAATCCAATTTCTT+AGG + chr4.1:79772647-79772666 None:intergenic 35.0%
TCTGTTACATCAAAAGGACA+GGG + chr4.1:79774686-79774705 None:intergenic 35.0%
TGTAGTCTAGCTGTTAATGT+TGG - chr4.1:79774647-79774666 MS.gene73306:intron 35.0%
TTCATTTCCAGATCATCAAG+GGG + chr4.1:79775431-79775450 None:intergenic 35.0%
TTCCGAAACCAAATCGTTAT+AGG + chr4.1:79773249-79773268 None:intergenic 35.0%
TTGATACTCATGTTAGTCCA+GGG - chr4.1:79773548-79773567 MS.gene73306:intron 35.0%
TTGCAAAAGCGACGTAAAAA+TGG - chr4.1:79774830-79774849 MS.gene73306:intron 35.0%
TTGTTGATCATCGTTGTTTG+TGG + chr4.1:79772354-79772373 None:intergenic 35.0%
TTTGATACTCATGTTAGTCC+AGG - chr4.1:79773547-79773566 MS.gene73306:intron 35.0%
! AAATTGGATTCTGAGGATCA+GGG - chr4.1:79772650-79772669 MS.gene73306:intron 35.0%
! AGGCGTGATTTCTAAGAAAA+AGG - chr4.1:79775229-79775248 MS.gene73306:intron 35.0%
! AGTAAGAACTGAGAGAGTTT+TGG - chr4.1:79773825-79773844 MS.gene73306:intron 35.0%
! CAGTGATTCACATGGATTTT+TGG + chr4.1:79772495-79772514 None:intergenic 35.0%
! GGAAAATGGGTCATTGTTTT+TGG - chr4.1:79772703-79772722 MS.gene73306:CDS 35.0%
! GGCTAGTTCTTAAAGTTATG+AGG - chr4.1:79774182-79774201 MS.gene73306:intron 35.0%
! GTAAGAACTGAGAGAGTTTT+GGG - chr4.1:79773826-79773845 MS.gene73306:intron 35.0%
! GTGGAAGCATGAATAATCTA+AGG + chr4.1:79774097-79774116 None:intergenic 35.0%
! TAAGAACTGAGAGAGTTTTG+GGG - chr4.1:79773827-79773846 MS.gene73306:intron 35.0%
! TCTGTTGTAAAGCTTTTGGA+TGG - chr4.1:79774957-79774976 MS.gene73306:intron 35.0%
! TTGGATGGTAACTCTTTTGT+TGG - chr4.1:79774972-79774991 MS.gene73306:intron 35.0%
! TTTTATTAGGAACAACCCTC+TGG + chr4.1:79773907-79773926 None:intergenic 35.0%
!! ATCGTTTTTGACTCTTCTTG+TGG + chr4.1:79772206-79772225 None:intergenic 35.0%
!! CATTGGTTCTTAAATGTGTG+AGG - chr4.1:79775489-79775508 MS.gene73306:CDS 35.0%
!! CTACTTGTTATTATGGTACG+GGG - chr4.1:79775141-79775160 MS.gene73306:intron 35.0%
!! GATGGATTATGGTTTGCATT+TGG - chr4.1:79773648-79773667 MS.gene73306:intron 35.0%
!! TGCCTATAACGATTTGGTTT+CGG - chr4.1:79773244-79773263 MS.gene73306:CDS 35.0%
!! TTTGACTTGTTTGAGGATCT+TGG + chr4.1:79775293-79775312 None:intergenic 35.0%
!!! ATTTTTACGTCGCTTTTGCA+AGG + chr4.1:79774831-79774850 None:intergenic 35.0%
AAGTAAGGAGGGAAATAGAG+TGG - chr4.1:79773742-79773761 MS.gene73306:intron 40.0%
ACCAATGTCACTATCACTAG+TGG - chr4.1:79772950-79772969 MS.gene73306:CDS 40.0%
ACGCTGTTATTCTTACCGTT+TGG - chr4.1:79774547-79774566 MS.gene73306:intron 40.0%
ACTGCTGATGCAAATTGGTT+TGG + chr4.1:79774798-79774817 None:intergenic 40.0%
AGAGTTCAACAGGACTTAAG+GGG + chr4.1:79773963-79773982 None:intergenic 40.0%
AGCTTTACAACAGACCCTAA+TGG + chr4.1:79774951-79774970 None:intergenic 40.0%
AGGGGAATGAGGTTCAAAAT+GGG - chr4.1:79772669-79772688 MS.gene73306:intron 40.0%
ATGTAGTAGGAGGGAATAAG+GGG - chr4.1:79773788-79773807 MS.gene73306:intron 40.0%
CAACACCTCAACTGCAATTT+CGG + chr4.1:79773510-79773529 None:intergenic 40.0%
CAAGTCAAAAGAAGATGCTG+TGG - chr4.1:79775304-79775323 MS.gene73306:intron 40.0%
CAATGTCACTATCACTAGTG+GGG - chr4.1:79772952-79772971 MS.gene73306:CDS 40.0%
CACCCAATTAATTCCCTTTG+AGG + chr4.1:79773993-79774012 None:intergenic 40.0%
CATCGTTGTTTGTGGTTAAG+AGG + chr4.1:79772346-79772365 None:intergenic 40.0%
CCAATGTCACTATCACTAGT+GGG - chr4.1:79772951-79772970 MS.gene73306:CDS 40.0%
CCTTCATTTCCAGATCATCA+AGG + chr4.1:79775433-79775452 None:intergenic 40.0%
CTAGTGTTCAGCGACTATAA+TGG - chr4.1:79775173-79775192 MS.gene73306:intron 40.0%
CTGCAAATTGCAAACCACAA+AGG + chr4.1:79775794-79775813 None:intergenic 40.0%
GAACTCTATCAGAACCTCAA+AGG - chr4.1:79773976-79773995 MS.gene73306:intron 40.0%
GAATGTAGTAGGAGGGAATA+AGG - chr4.1:79773786-79773805 MS.gene73306:intron 40.0%
GAATTGCAACAGGAATGTGA+TGG + chr4.1:79773941-79773960 None:intergenic 40.0%
GAGTAACAGAATGTAGTAGG+AGG - chr4.1:79773778-79773797 MS.gene73306:intron 40.0%
GCATAACATTGGAAAGCAAG+AGG - chr4.1:79772826-79772845 MS.gene73306:CDS 40.0%
GCTACTTAAACGGTAATGTG+TGG - chr4.1:79773613-79773632 MS.gene73306:intron 40.0%
GGGGTCTTTGTTAAGGAAAA+TGG - chr4.1:79772689-79772708 MS.gene73306:CDS 40.0%
GGTGTCAACAATTCATGTGT+TGG + chr4.1:79773017-79773036 None:intergenic 40.0%
GTACACCAGGATACTTTATG+TGG + chr4.1:79774116-79774135 None:intergenic 40.0%
GTGTGGACCAATATAACAGA+TGG - chr4.1:79773630-79773649 MS.gene73306:intron 40.0%
GTTGTACATCAGGAATGTTG+AGG + chr4.1:79775115-79775134 None:intergenic 40.0%
TAATTCCATCAACCGTTCCA+CGG + chr4.1:79772771-79772790 None:intergenic 40.0%
TCAGCATCATCATCATTCCT+TGG - chr4.1:79772380-79772399 MS.gene73306:intron 40.0%
TCATTGCAAAATAACCCCCA+GGG + chr4.1:79773110-79773129 None:intergenic 40.0%
TCATTTCCAGATCATCAAGG+GGG + chr4.1:79775430-79775449 None:intergenic 40.0%
TCTGTTCCTATAGTTCCAGA+GGG - chr4.1:79773889-79773908 MS.gene73306:intron 40.0%
TTCATGCACAGTGATTCACA+TGG + chr4.1:79772503-79772522 None:intergenic 40.0%
! AAGGAATGATGATGATGCTG+AGG + chr4.1:79772381-79772400 None:intergenic 40.0%
! AATTGGATTCTGAGGATCAG+GGG - chr4.1:79772651-79772670 MS.gene73306:intron 40.0%
! AGAGGTTTTTGATGCTTCCA+AGG + chr4.1:79772400-79772419 None:intergenic 40.0%
! AGGGTCTGTTGTAAAGCTTT+TGG - chr4.1:79774953-79774972 MS.gene73306:intron 40.0%
! AGGTTCTGATAGAGTTCAAC+AGG + chr4.1:79773973-79773992 None:intergenic 40.0%
! CCATAATAACAAGTAGTGGG+TGG + chr4.1:79775137-79775156 None:intergenic 40.0%
! CCTTGATGATCTGGAAATGA+AGG - chr4.1:79775430-79775449 MS.gene73306:CDS 40.0%
! CTTTGTGGTTTGCAATTTGC+AGG - chr4.1:79775792-79775811 MS.gene73306:CDS 40.0%
! GAAATTGGATTCTGAGGATC+AGG - chr4.1:79772649-79772668 MS.gene73306:intron 40.0%
! GTTTTGCCCAGACTTCAATT+GGG + chr4.1:79772979-79772998 None:intergenic 40.0%
! TAGCATTTTCTCTTTCGCCA+GGG + chr4.1:79774471-79774490 None:intergenic 40.0%
! TGCTTCCACATAAAGTATCC+TGG - chr4.1:79774108-79774127 MS.gene73306:intron 40.0%
! TTAGCATTTTCTCTTTCGCC+AGG + chr4.1:79774472-79774491 None:intergenic 40.0%
!! CCACCCACTACTTGTTATTA+TGG - chr4.1:79775134-79775153 MS.gene73306:intron 40.0%
!! GTGTTGGGTTAGTTCATACA+GGG + chr4.1:79773001-79773020 None:intergenic 40.0%
!! TGGAACGGTTGATGGAATTA+GGG - chr4.1:79772771-79772790 MS.gene73306:CDS 40.0%
!! TGTGTTGGGTTAGTTCATAC+AGG + chr4.1:79773002-79773021 None:intergenic 40.0%
!! TGTTTTGGACAACCAAACTG+TGG + chr4.1:79775089-79775108 None:intergenic 40.0%
!!! CCCTCAATGATTTTGACTCT+AGG + chr4.1:79773338-79773357 None:intergenic 40.0%
AAAGGCCAAAGTTCAAACCC+TGG - chr4.1:79774451-79774470 MS.gene73306:intron 45.0%
ACCACTCTTCAGAGTAGTGT+TGG - chr4.1:79774381-79774400 MS.gene73306:intron 45.0%
ACGGAGGTCATCAAAGAACA+AGG + chr4.1:79772752-79772771 None:intergenic 45.0%
ATTTGTCAGAGGCTCATGAG+AGG + chr4.1:79774736-79774755 None:intergenic 45.0%
CAGACCCTAATGGTATTGCA+AGG + chr4.1:79774941-79774960 None:intergenic 45.0%
CAGGGGAATGAGGTTCAAAA+TGG - chr4.1:79772668-79772687 MS.gene73306:intron 45.0%
CATTGCAAAATAACCCCCAG+GGG + chr4.1:79773109-79773128 None:intergenic 45.0%
CCACTCTTCAGAGTAGTGTT+GGG - chr4.1:79774382-79774401 MS.gene73306:intron 45.0%
CTCATTGCAAAATAACCCCC+AGG + chr4.1:79773111-79773130 None:intergenic 45.0%
CTCTGACTGCTGATGCAAAT+TGG + chr4.1:79774803-79774822 None:intergenic 45.0%
CTCTGTTCCTATAGTTCCAG+AGG - chr4.1:79773888-79773907 MS.gene73306:intron 45.0%
GAACACACTGTAAACGCCTT+GGG - chr4.1:79773266-79773285 MS.gene73306:CDS 45.0%
GACAACCAAACTGTGGTGAT+AGG + chr4.1:79775082-79775101 None:intergenic 45.0%
GACTTAAGGGGAATTGCAAC+AGG + chr4.1:79773951-79773970 None:intergenic 45.0%
GAGGAAGTCACGCATAACAT+TGG - chr4.1:79772815-79772834 MS.gene73306:CDS 45.0%
GGGGAATGAGGTTCAAAATG+GGG - chr4.1:79772670-79772689 MS.gene73306:intron 45.0%
GGGTTGTTCCAAACATCGTT+TGG + chr4.1:79772446-79772465 None:intergenic 45.0%
GTACAAGACTGTTGAGACCT+TGG - chr4.1:79775010-79775029 MS.gene73306:intron 45.0%
GTACAAGTGGGATCTCATGA+AGG + chr4.1:79774075-79774094 None:intergenic 45.0%
GTCTCAGGTTCGAATATCTG+AGG + chr4.1:79773038-79773057 None:intergenic 45.0%
TGAGGTAAAGTAACCGCCAT+TGG - chr4.1:79775472-79775491 MS.gene73306:CDS 45.0%
TGTGGTTAAGAGGCGAATGA+TGG + chr4.1:79772336-79772355 None:intergenic 45.0%
TGTTGCCGAAATTGCAGTTG+AGG - chr4.1:79773502-79773521 MS.gene73306:intron 45.0%
TTGCATCAGCAGTCAGAGTA+AGG - chr4.1:79774805-79774824 MS.gene73306:intron 45.0%
TTTCGCCAGGGTTTGAACTT+TGG + chr4.1:79774459-79774478 None:intergenic 45.0%
! AACACTACTCTGAAGAGTGG+TGG + chr4.1:79774382-79774401 None:intergenic 45.0%
! CCAAACATCGTTTGGAGTGA+GGG + chr4.1:79772438-79772457 None:intergenic 45.0%
! CCCACTAGTGATAGTGACAT+TGG + chr4.1:79772954-79772973 None:intergenic 45.0%
! GGAATGTTGAGGAGCTGTTT+TGG + chr4.1:79775104-79775123 None:intergenic 45.0%
! GGTTTTGCCCAGACTTCAAT+TGG + chr4.1:79772980-79772999 None:intergenic 45.0%
! GTTTGGAGTGAGGGTTTGTA+CGG + chr4.1:79772429-79772448 None:intergenic 45.0%
! TAGTCGCTGAACACTAGCTT+TGG + chr4.1:79775170-79775189 None:intergenic 45.0%
! TCCAAACATCGTTTGGAGTG+AGG + chr4.1:79772439-79772458 None:intergenic 45.0%
! TGATAGTGACATTGGTCCAC+CGG + chr4.1:79772946-79772965 None:intergenic 45.0%
! TTGATGTGATGGAAGCTGCA+AGG + chr4.1:79775828-79775847 None:intergenic 45.0%
! TTGTTCTTTGATGACCTCCG+TGG - chr4.1:79772751-79772770 MS.gene73306:CDS 45.0%
!! GAACAACCCTCTGGAACTAT+AGG + chr4.1:79773898-79773917 None:intergenic 45.0%
!! GATAAGCATTGGTGAAGCTG+AGG - chr4.1:79775454-79775473 MS.gene73306:CDS 45.0%
!! GCTGATGCAAATTGGTTTGG+TGG + chr4.1:79774795-79774814 None:intergenic 45.0%
!! GTGGAACGGTTGATGGAATT+AGG - chr4.1:79772770-79772789 MS.gene73306:CDS 45.0%
ACCTGTGGTCTAACTAACCC+TGG + chr4.1:79773568-79773587 None:intergenic 50.0%
CAGGCTTGATGCACTTGCAA+AGG - chr4.1:79775933-79775952 MS.gene73306:CDS 50.0%
CCCTCACTCCAAACGATGTT+TGG - chr4.1:79772435-79772454 MS.gene73306:intron 50.0%
CGGCGTAAGACCAACTAATC+CGG - chr4.1:79772924-79772943 MS.gene73306:CDS 50.0%
CGTAAGACCAACTAATCCGG+TGG - chr4.1:79772927-79772946 MS.gene73306:CDS 50.0%
CTTGGACTCTTCCTTGTGCA+CGG - chr4.1:79775028-79775047 MS.gene73306:intron 50.0%
GGAACACACTGTAAACGCCT+TGG - chr4.1:79773265-79773284 MS.gene73306:CDS 50.0%
GGGTTTGTACGGTTTCGTAG+AGG + chr4.1:79772418-79772437 None:intergenic 50.0%
GGTTAAGAGGCGAATGATGG+TGG + chr4.1:79772333-79772352 None:intergenic 50.0%
TCTTGGATCCAGTGCAGTCA+AGG + chr4.1:79775276-79775295 None:intergenic 50.0%
TGGGGACCCAATTGAAGTCT+GGG - chr4.1:79772970-79772989 MS.gene73306:CDS 50.0%
TGGTGGCAAGTGGAAGAGAA+AGG + chr4.1:79772316-79772335 None:intergenic 50.0%
TTCGAACCTGAGACCTAGAC+AGG - chr4.1:79773044-79773063 MS.gene73306:CDS 50.0%
TTTCCAGATCATCAAGGGGG+AGG + chr4.1:79775427-79775446 None:intergenic 50.0%
! ATGTGATGGAAGCTGCAAGG+AGG + chr4.1:79775825-79775844 None:intergenic 50.0%
! CCCAACACTACTCTGAAGAG+TGG + chr4.1:79774385-79774404 None:intergenic 50.0%
! CTTTGATGACCTCCGTGGAA+CGG - chr4.1:79772756-79772775 MS.gene73306:CDS 50.0%
! TTCTGAGGATCAGGGGAATG+AGG - chr4.1:79772658-79772677 MS.gene73306:intron 50.0%
!! CATTGGTCCACCGGATTAGT+TGG + chr4.1:79772937-79772956 None:intergenic 50.0%
!! GTAGTGGGTGGTTGTACATC+AGG + chr4.1:79775125-79775144 None:intergenic 50.0%
!! TCCAGGGTTAGTTAGACCAC+AGG - chr4.1:79773564-79773583 MS.gene73306:intron 50.0%
ACCAAGAGCCTTGACTGCAC+TGG - chr4.1:79775265-79775284 MS.gene73306:intron 55.0%
CCAAACTGTGGTGATAGGCC+AGG + chr4.1:79775077-79775096 None:intergenic 55.0%
CCTGGCCTATCACCACAGTT+TGG - chr4.1:79775074-79775093 MS.gene73306:intron 55.0%
CGTGCACAAGGAAGAGTCCA+AGG + chr4.1:79775030-79775049 None:intergenic 55.0%
GCAAAATAACCCCCAGGGGT+TGG + chr4.1:79773105-79773124 None:intergenic 55.0%
GTGGGGACCCAATTGAAGTC+TGG - chr4.1:79772969-79772988 MS.gene73306:CDS 55.0%
GTGGTTAAGGCCTGGGTACT+AGG + chr4.1:79773078-79773097 None:intergenic 55.0%
TCCAGTGCAGTCAAGGCTCT+TGG + chr4.1:79775269-79775288 None:intergenic 55.0%
TTCCATCAACCGTTCCACGG+AGG + chr4.1:79772768-79772787 None:intergenic 55.0%
! AAGCCTCCCCCTTGATGATC+TGG - chr4.1:79775421-79775440 MS.gene73306:CDS 55.0%
!! AGGCGAATGATGGTGGCAAG+TGG + chr4.1:79772326-79772345 None:intergenic 55.0%
!! CGCTCGGTGTTACTCAATCC+TGG - chr4.1:79775056-79775075 MS.gene73306:intron 55.0%
GACCTCCGTGGAACGGTTGA+TGG - chr4.1:79772763-79772782 MS.gene73306:CDS 60.0%
GTACCCAGGCCTTAACCACC+AGG - chr4.1:79773079-79773098 MS.gene73306:CDS 60.0%
TAACCACCAGGCCAACCCCT+GGG - chr4.1:79773091-79773110 MS.gene73306:CDS 60.0%
TGCGCACCTGTCTAGGTCTC+AGG + chr4.1:79773053-79773072 None:intergenic 60.0%
TGGCCTGGTGGTTAAGGCCT+GGG + chr4.1:79773085-79773104 None:intergenic 60.0%
TTAACCACCAGGCCAACCCC+TGG - chr4.1:79773090-79773109 MS.gene73306:CDS 60.0%
TTGGCCTGGTGGTTAAGGCC+TGG + chr4.1:79773086-79773105 None:intergenic 60.0%
! CTAGGAGTGCGCACCTGTCT+AGG + chr4.1:79773060-79773079 None:intergenic 60.0%
!! AGGGGTTGGCCTGGTGGTTA+AGG + chr4.1:79773091-79773110 None:intergenic 60.0%
AACCACCAGGCCAACCCCTG+GGG - chr4.1:79773092-79773111 MS.gene73306:CDS 65.0%
CTTGTGCACGGACTCGCGCT+CGG - chr4.1:79775040-79775059 MS.gene73306:intron 65.0%
GGTGCGCACTCCTAGTACCC+AGG - chr4.1:79773065-79773084 MS.gene73306:CDS 65.0%
!! ATAACCCCCAGGGGTTGGCC+TGG + chr4.1:79773100-79773119 None:intergenic 65.0%
ACCACCAGGCCAACCCCTGG+GGG - chr4.1:79773093-79773112 MS.gene73306:CDS 70.0%
CGAGCGCGAGTCCGTGCACA+AGG + chr4.1:79775042-79775061 None:intergenic 70.0%
!! ACCCCCAGGGGTTGGCCTGG+TGG + chr4.1:79773097-79773116 None:intergenic 75.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 79772188 79775975 79772188 ID=MS.gene73306
chr4.1 mRNA 79772188 79775975 79772188 ID=MS.gene73306.t1;Parent=MS.gene73306
chr4.1 exon 79775316 79775975 79775316 ID=MS.gene73306.t1.exon1;Parent=MS.gene73306.t1
chr4.1 CDS 79775316 79775975 79775316 ID=cds.MS.gene73306.t1;Parent=MS.gene73306.t1
chr4.1 exon 79772688 79773458 79772688 ID=MS.gene73306.t1.exon2;Parent=MS.gene73306.t1
chr4.1 CDS 79772688 79773458 79772688 ID=cds.MS.gene73306.t1;Parent=MS.gene73306.t1
chr4.1 exon 79772188 79772349 79772188 ID=MS.gene73306.t1.exon3;Parent=MS.gene73306.t1
chr4.1 CDS 79772188 79772349 79772188 ID=cds.MS.gene73306.t1;Parent=MS.gene73306.t1
Gene Sequence

>MS.gene73306

ATGGCTTCTTCGCAACCACAAGAAGAGTCAAAAACGATTCCACTGAAAATTTTAATAGACAGAGAAAACAACAAAGTAGTCGCTGTAGAAGCAACAAAAGACTTCATCGACACTCTCTTCAGCTTCCTTTCTCTTCCACTTGCCACCATCATTCGCCTCTTAACCACAAACAACGATGATCAACAACAATCCTCAGCATCATCATCATTCCTTGGAAGCATCAAAAACCTCTACGAAACCGTACAAACCCTCACTCCAAACGATGTTTGGAACAACCCTTTCTCCAAACAAATGCTATTGAATCCCAAAAATCCATGTGAATCACTGTGCATGAATCTGTTATTGAATATTGATGACACTGAATCATCAAGTAAGTTTTTTGTTTGTGATTCTTGTTACAAGTTTACGACTTTTCAGAATCTTGATTGTACTTGTGGAAAACCCACTAATAAACAACCTAAGAAATTGGATTCTGAGGATCAGGGGAATGAGGTTCAAAATGGGGTCTTTGTTAAGGAAAATGGGTCATTGTTTTTGGTGTTTGATGATTTGAAGATTGTGCCTTGTTCTTTGATGACCTCCGTGGAACGGTTGATGGAATTAGGGTATTCAGATTTGAGTAAGTTAGAGGAAGTCACGCATAACATTGGAAAGCAAGAGGTAATTGTATTGTGTTTTGTGTTGTAAACTTAATTTTGCAATGTGTATTTTGTTTTATTTTTGGAAACTCGGTATTCGGCGTAAGACCAACTAATCCGGTGGACCAATGTCACTATCACTAGTGGGGACCCAATTGAAGTCTGGGCAAAACCCTGTATGAACTAACCCAACACATGAATTGTTGACACCTCAGATATTCGAACCTGAGACCTAGACAGGTGCGCACTCCTAGTACCCAGGCCTTAACCACCAGGCCAACCCCTGGGGGTTATTTTGCAATGAGTTTTTCTATTTTAGAGTAGTGGTGAATATGCCTTACAAATCTGTGTTTTTTTAGCTTTTGGCATTGATGATTCAAATGAACTTATAGCATCATTTGAATTACGAAATTGAAAATGCCTATAACGATTTGGTTTCGGAACACACTGTAAACGCCTTGGGTAATTATGAATCATTAGGGAAAAGATTCAAGATTTCTCTATTGAATCCTAGAGTCAAAATCATTGAGGGTTGAGAGAAAAAATAGAAATTAGGGAACCCCATGATGTCATGTTAGTTTGTAGAGTAAGAAAAATTTGAAAGAAAGTTTTTGAAATGAAATTTTCAGTCATGATTCTAAATTGCAGTTGTGGTTACAATGTGAACCTTGTTAAATGTTGCCGAAATTGCAGTTGAGGTGTTGTAACTAACACCTGTTATTTTGATACTCATGTTAGTCCAGGGTTAGTTAGACCACAGGTATTAGTTATCTATGAGTATCAAAATGCTACTTAAACGGTAATGTGTGGACCAATATAACAGATGGATTATGGTTTGCATTTGGCATAGTATCGGTTAAGAACCTGATAAGAGAGCATTCATTAAGAAGGTCCATGTGATAAAGAATAGAAAGGAAAGTAAGGAGGGAAATAGAGTGGTTATAAACTGACAGAGTAACAGAATGTAGTAGGAGGGAATAAGGGGCTGTTGCAGAAGCAAGTAAGAACTGAGAGAGTTTTGGGGCACTTTTGAATTAGCCTAGAGTTTATCACTTTCTTTTGCTCTGTTCCTATAGTTCCAGAGGGTTGTTCCTAATAAAATTCTTCTTTTTCCATCACATTCCTGTTGCAATTCCCCTTAAGTCCTGTTGAACTCTATCAGAACCTCAAAGGGAATTAATTGGGTGAAAGAGATGATAATTTTTACTGATTGGATGAAATTGAACAAAACCAAATAGAAATTTCTCCTTCATGAGATCCCACTTGTACCTTAGATTATTCATGCTTCCACATAAAGTATCCTGGTGTACCATAAATTTAAAGGGTAAACGTTATTTAAAAAACATTCACAATTTGGGCTAGTTCTTAAAGTTATGAGGCTAGTTGTTATACTTAGTTATGGACACACTATAACTCTCAAGTTAGAAATTGTTAATAATTTTGTCCTTTGAATGTTACTTACAAGTTATATTGGTGTTACTGCTACACAATCAAGTACAACATGCTGAAATCTAATTTTCGCTGTGTCTAAGAGCTTCAGAAACATGTTTTCTCCACCACTCTTCAGAGTAGTGTTGGGTAGCTCAACTAGTTTGAGTTAAGAGTTAAAGTTAGTAAATGAGTTAAAAGGCCAAAGTTCAAACCCTGGCGAAAGAGAAAATGCTAACATGACTATTAATGTACAAGCATTTGTATATGTATATAAAAAAAAAAAAACACGCACGCTGTTATTCTTACCGTTTGGTTTAATATCTTGCATTTCTGTTATGTGACGTGAGCTTGCTAGTGAAAGATATTTTAAATAGGTTATATTGGTATCACTGTAGTCTAGCTGTTAATGTTGGCTAAATAAATGTTCCCTGTCCTTTTGATGTAACAGATACTGAACCTCCTCAAATACATCTTAACCTCTCATGAGCCTCTGACAAATACAATTTTGAAAAGTAGCTCAAAGAACAAAGAAAATCCACCAAACCAATTTGCATCAGCAGTCAGAGTAAGGCCTTGCAAAAGCGACGTAAAAATGGATGTTAAGCTTGCGCGAAGTAAATCTCAGAAAAAAATAATATTCGCAGAAGCGAGTGAAAACTTTGTTGATTTCATTTTTACTTTCCTTGCAATACCATTAGGGTCTGTTGTAAAGCTTTTGGATGGTAACTCTTTTGTTGGATGTGTTGATAACTTGTACAAGACTGTTGAGACCTTGGACTCTTCCTTGTGCACGGACTCGCGCTCGGTGTTACTCAATCCTGGCCTATCACCACAGTTTGGTTGTCCAAAACAGCTCCTCAACATTCCTGATGTACAACCACCCACTACTTGTTATTATGGTACGGGGACGCCAAAGCTAGTGTTCAGCGACTATAATGGGAGTCATCAAATCATAGAAGATAAGATAGAGGGAGGCGTGATTTCTAAGAAAAAGGTATCAATTTATAAACCAAGAGCCTTGACTGCACTGGATCCAAGATCCTCAAACAAGTCAAAAGAAGATGCTGTGGGATTTGTGAAGAAAGCAACATTATATGCTATTGGAGATGATCTAAAAGTAAAACCACTTTCTGATAATTCTTGCATTTCATATTTGAAAGAATTAAGCCTCCCCCTTGATGATCTGGAAATGAAGGTGATAAGCATTGGTGAAGCTGAGGTAAAGTAACCGCCATTGGTTCTTAAATGTGTGAGGCAGTATGTTACTATAATTCTGAATGTATCGAAATTACAAAAACATTCTTGAATGTGACTTCTATTAGTAATTGTATGAACGAAACTAACTAACAGAAGACATATTCAAGGACCAAACTAATCAATGAAAGACACGTACGGAGACCAAACTGACTAAACAAAAGAAACATCCATGCATGTTCTTGTAACTTTTATACATTCAGGAAAGCGAATCACACATTTAAGGATCAAAATTGTTATTTACTCTTTTGTTTTGTTTTCTCTGTTGTTTGATAATCTTCCTTTGTGGTTTGCAATTTGCAGGCGTTGAGCCTCCTTGCAGCTTCCATCACATCAAAATTTACACTGACTAGTGGACTAGAAAACTTTTTTATTGTGCCAAAACAAGAATCAAATTTGACATCAAAGTATGTACAAACTAGCAGGCTTGATGCACTTGCAAAGGAGCCTATAGCAGAAGCCTGA
Protein sequence

>MS.gene73306.t1

MASSQPQEESKTIPLKILIDRENNKVVAVEATKDFIDTLFSFLSLPLATIIRLLTTNNDDQQQSSASSSFLGSIKNLYETVQTLTPNDVWNNPFSKQMLLNPKNPCESLCMNLLLNIDDTESSSKFFVCDSCYKFTTFQNLDCTCGKPTNKQPKKLDSEDQGNEVQNGVFVKENGSLFLVFDDLKIVPCSLMTSVERLMELGYSDLSKLEEVTHNIGKQEILNLLKYILTSHEPLTNTILKSSSKNKENPPNQFASAVRVRPCKSDVKMDVKLARSKSQKKIIFAEASENFVDFIFTFLAIPLGSVVKLLDGNSFVGCVDNLYKTVETLDSSLCTDSRSVLLNPGLSPQFGCPKQLLNIPDVQPPTTCYYGTGTPKLVFSDYNGSHQIIEDKIEGGVISKKKVSIYKPRALTALDPRSSNKSKEDAVGFVKKATLYAIGDDLKVKPLSDNSCISYLKELSLPLDDLEMKVISIGEAEALSLLAASITSKFTLTSGLENFFIVPKQESNLTSKYVQTSRLDALAKEPIAEA