AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene66062

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66062.t1 MTR_7g058710 80.157 509 74 3 1 507 1 484 0.0 811
MS.gene66062.t1 MTR_7g058700 64.066 487 83 6 24 507 531 928 0.0 573
MS.gene66062.t1 MTR_7g066570 55.906 508 188 8 4 504 6 484 0.0 527
MS.gene66062.t1 MTR_7g012680 52.941 510 179 8 1 507 1 452 1.33e-169 486
MS.gene66062.t1 MTR_7g066260 52.549 510 184 11 1 500 1 462 1.64e-159 462
MS.gene66062.t1 MTR_7g066580 50.104 483 189 6 18 493 1 438 5.23e-153 444
MS.gene66062.t1 MTR_7g066340 50.693 505 192 10 1 500 1 453 5.32e-153 445
MS.gene66062.t1 MTR_1g041315 50.307 489 194 8 3 484 5 451 1.25e-152 445
MS.gene66062.t1 MTR_7g066350 49.701 501 182 9 8 497 5 446 6.17e-149 434
MS.gene66062.t1 MTR_2g029400 49.898 491 155 7 2 490 4 405 1.09e-143 419
MS.gene66062.t1 MTR_7g066290 47.525 505 188 7 1 500 1 433 1.06e-132 392
MS.gene66062.t1 MTR_7g066400 44.533 503 204 9 1 497 1 434 4.82e-129 383
MS.gene66062.t1 MTR_7g066430 43.107 515 253 11 12 506 4 498 1.04e-128 384
MS.gene66062.t1 MTR_7g066410 43.529 510 258 11 13 500 11 512 3.81e-127 380
MS.gene66062.t1 MTR_7g066410 29.918 244 140 8 12 245 284 506 2.80e-16 82.0
MS.gene66062.t1 MTR_7g066360 46.199 513 195 14 2 500 4 449 1.74e-119 360
MS.gene66062.t1 MTR_7g066310 44.064 497 160 10 7 500 2 383 1.08e-115 347
MS.gene66062.t1 MTR_7g063660 37.743 514 268 11 7 507 4 478 1.54e-101 313
MS.gene66062.t1 MTR_7g063840 38.760 516 265 14 1 507 1 474 6.87e-101 311
MS.gene66062.t1 MTR_7g066680 58.194 299 90 4 231 497 40 335 5.76e-100 305
MS.gene66062.t1 MTR_7g063900 40.691 521 263 12 1 507 1 489 2.47e-99 308
MS.gene66062.t1 MTR_7g062280 36.484 529 273 10 4 507 2 492 5.56e-99 307
MS.gene66062.t1 MTR_7g063820 39.489 509 278 11 4 507 2 485 2.87e-96 300
MS.gene66062.t1 MTR_7g062300 36.994 519 260 13 1 499 1 472 2.83e-94 295
MS.gene66062.t1 MTR_7g063880 39.265 517 251 16 3 506 2 468 3.92e-94 294
MS.gene66062.t1 MTR_7g063890 41.006 517 256 11 6 506 21 504 3.37e-93 293
MS.gene66062.t1 MTR_4g019310 36.699 515 280 13 6 500 2 490 2.50e-88 280
MS.gene66062.t1 MTR_7g063920 37.109 512 239 10 3 507 2 437 4.05e-88 277
MS.gene66062.t1 MTR_7g066280 41.935 434 184 11 91 500 1 390 1.95e-87 275
MS.gene66062.t1 MTR_1g014060 63.054 203 72 2 21 223 9 208 2.53e-84 266
MS.gene66062.t1 MTR_1g014060 45.714 210 93 3 298 507 203 391 1.62e-45 164
MS.gene66062.t1 MTR_3g065200 36.196 489 230 11 12 497 3 412 3.46e-84 268
MS.gene66062.t1 MTR_7g063830 36.220 508 242 13 4 500 2 438 3.03e-83 265
MS.gene66062.t1 MTR_3g007740 35.815 497 250 14 11 500 8 442 1.09e-78 253
MS.gene66062.t1 MTR_7g063670 36.739 509 242 13 13 507 16 458 1.88e-78 253
MS.gene66062.t1 MTR_4g017830 33.148 540 294 15 1 506 1 507 2.75e-76 249
MS.gene66062.t1 MTR_4g017410 32.428 552 265 16 1 506 1 490 6.60e-75 245
MS.gene66062.t1 MTR_7g066480 39.952 413 185 13 11 404 15 383 1.48e-73 239
MS.gene66062.t1 MTR_7g066480 49.275 69 35 0 428 496 349 417 5.88e-11 65.1
MS.gene66062.t1 MTR_4g019340 34.118 510 255 15 13 488 39 501 2.90e-70 233
MS.gene66062.t1 MTR_4g019340 28.372 215 132 8 12 223 303 498 1.87e-12 69.7
MS.gene66062.t1 MTR_4g017440 33.208 530 282 18 13 506 15 508 1.36e-69 231
MS.gene66062.t1 MTR_4g017610 32.877 511 265 15 15 497 16 476 3.02e-69 229
MS.gene66062.t1 MTR_7g066490 41.159 345 152 8 12 346 16 319 4.80e-69 227
MS.gene66062.t1 MTR_4g017470 31.784 538 273 15 1 506 1 476 1.62e-66 223
MS.gene66062.t1 MTR_4g017550 31.526 498 253 16 42 498 21 471 1.30e-52 185
MS.gene66062.t1 MTR_4g017550 28.700 223 123 8 12 216 247 451 4.75e-11 65.5
MS.gene66062.t1 MTR_7g063720 36.752 234 123 5 276 507 23 233 2.31e-38 140
MS.gene66062.t1 MTR_7g063720 26.471 238 131 8 12 245 23 220 8.72e-14 71.6
MS.gene66062.t1 MTR_7g062270 43.750 176 87 5 13 184 11 178 1.18e-37 142
MS.gene66062.t1 MTR_2g067310 44.886 176 54 5 23 198 58 190 3.61e-31 121
MS.gene66062.t1 MTR_7g063850 29.412 323 186 8 188 506 4 288 1.22e-29 118
MS.gene66062.t1 MTR_8g023240 25.553 497 300 15 13 492 38 481 5.28e-28 117
MS.gene66062.t1 MTR_1g115440 31.086 267 135 7 3 250 2 238 4.81e-25 103
MS.gene66062.t1 MTR_1g115440 28.814 236 148 7 270 493 5 232 7.47e-19 86.3
MS.gene66062.t1 MTR_7g100420 35.926 270 154 8 232 496 138 393 1.09e-23 103
MS.gene66062.t1 MTR_7g100420 71.429 42 12 0 13 54 40 81 3.43e-12 68.6
MS.gene66062.t1 MTR_8g445860 29.644 253 154 5 4 251 5 238 6.44e-23 97.8
MS.gene66062.t1 MTR_8g445860 28.205 234 149 6 265 488 2 226 5.88e-19 86.7
MS.gene66062.t1 MTR_0150s0010 31.321 265 139 7 1 250 1 237 7.38e-23 97.8
MS.gene66062.t1 MTR_0150s0010 28.070 228 148 5 276 493 10 231 4.46e-17 81.3
MS.gene66062.t1 MTR_7g066390 36.413 184 55 4 317 500 1 122 3.44e-22 93.6
MS.gene66062.t1 MTR_4g019240 41.964 112 51 5 13 114 14 121 2.29e-17 80.5
MS.gene66062.t1 MTR_1g115455 28.409 264 145 9 1 251 1 233 1.21e-16 79.7
MS.gene66062.t1 MTR_1g115450 40.909 88 47 1 9 96 4 86 2.43e-15 73.6
MS.gene66062.t1 MTR_8g445920 37.363 91 52 1 4 94 2 87 2.31e-13 67.0
MS.gene66062.t1 MTR_8g044890 37.363 91 52 1 4 94 2 87 2.31e-13 67.0
MS.gene66062.t1 MTR_0150s0030 36.264 91 52 2 6 95 2 87 1.37e-12 67.4
MS.gene66062.t1 MTR_7g063690 30.539 167 93 5 139 303 77 222 2.21e-12 67.4
MS.gene66062.t1 MTR_7g063690 66.667 48 16 0 13 60 13 60 3.47e-12 67.0
MS.gene66062.t1 MTR_8g445910 36.264 91 52 2 6 95 2 87 1.20e-11 65.5
MS.gene66062.t1 MTR_8g044880 36.264 91 52 2 6 95 2 87 1.25e-11 65.9
MS.gene66062.t1 MTR_1g115470 40.476 84 45 1 12 95 6 84 1.38e-11 67.0
MS.gene66062.t1 MTR_7g063870 50.909 55 27 0 6 60 25 79 2.58e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene66062.t1 AT5G01120 33.868 499 292 12 13 496 10 485 4.81e-71 235
MS.gene66062.t1 AT5G01150 29.940 501 309 7 12 500 9 479 9.12e-61 207
MS.gene66062.t1 AT3G09140 30.684 541 314 14 1 500 1 521 7.64e-60 206
MS.gene66062.t1 AT3G09140 30.798 526 305 14 1 500 1 493 7.71e-60 205
MS.gene66062.t1 AT5G43240 28.770 504 315 10 13 496 10 489 3.29e-58 201
MS.gene66062.t1 AT5G43240 28.770 504 315 10 13 496 10 489 3.29e-58 201
MS.gene66062.t1 AT5G43240 28.770 504 315 10 13 496 10 489 3.29e-58 201
MS.gene66062.t1 AT3G09110 33.735 332 198 6 12 340 9 321 1.33e-54 187
MS.gene66062.t1 AT5G01140 29.209 493 295 9 12 500 9 451 3.07e-54 189
MS.gene66062.t1 AT3G09120 32.317 328 195 8 11 330 5 313 5.25e-48 169
MS.gene66062.t1 AT5G01130 29.124 491 291 10 12 500 9 444 1.90e-47 171
MS.gene66062.t1 AT5G37320 28.265 513 300 15 13 500 10 479 7.00e-43 159
MS.gene66062.t1 AT5G43240 26.012 346 221 8 163 496 23 345 5.39e-21 95.1

Find 95 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTACTCCAATTGGAATAATT+TGG 0.149562 7.4:+44683662 None:intergenic
CCTCCCATTGCTGCACAATT+TGG 0.168044 7.4:-44683694 MS.gene66062:CDS
AAAGTTTGTACTTCTAAATT+TGG 0.207777 7.4:-44683539 MS.gene66062:CDS
TTAATCTCGAAATATCTTAA+AGG 0.212319 7.4:-44683730 MS.gene66062:CDS
GGAACTGTTTGAGCTTATTT+AGG 0.219668 7.4:-44684402 MS.gene66062:CDS
AACATTGAAGCTGTGAAATT+TGG 0.238206 7.4:-44684622 MS.gene66062:CDS
TAAGCTTCCATGAAATTTCT+TGG 0.244026 7.4:+44684514 None:intergenic
TATGTGATGCCTAATGTCTT+TGG 0.283427 7.4:-44684259 MS.gene66062:CDS
CTCCCATTGCTGCACAATTT+GGG 0.299927 7.4:-44683693 MS.gene66062:CDS
CCCACAGATGAAGTGTTTCA+TGG 0.340486 7.4:+44684453 None:intergenic
CTCTGATATTGGCGCTATTA+CGG 0.348550 7.4:-44684203 MS.gene66062:CDS
TAATCTCGAAATATCTTAAA+GGG 0.353819 7.4:-44683729 MS.gene66062:CDS
AACACTTCATCTGTGGGAAT+TGG 0.357465 7.4:-44684447 MS.gene66062:CDS
CCGCCAGAATGTCTGAGTTC+TGG 0.358734 7.4:-44684331 MS.gene66062:CDS
CCGACTCATACCGATCATTA+AGG 0.365612 7.4:-44683178 MS.gene66062:CDS
ACTTAGGCCAAGAAATTTCA+TGG 0.370210 7.4:-44684521 MS.gene66062:CDS
ACTCCAGAACTCAGACATTC+TGG 0.381465 7.4:+44684328 None:intergenic
TACAACCAAATTATTCCAAT+TGG 0.382733 7.4:-44683667 MS.gene66062:CDS
TTTCGAGATTAAATAACTTT+CGG 0.388183 7.4:+44683741 None:intergenic
AAGCTAGGAATCTCTGATAT+TGG 0.391167 7.4:-44684214 MS.gene66062:CDS
TTCTGGAGTCGGGTTTGTTA+AGG 0.395303 7.4:-44684314 MS.gene66062:CDS
AGCTTCTTAACATTGCCTTT+AGG 0.397252 7.4:-44684676 MS.gene66062:CDS
GGTGAGCAAGCTACTCCAAT+TGG 0.408678 7.4:+44683652 None:intergenic
TCAACTTCTGCTATGTCAAT+TGG 0.409564 7.4:-44683207 MS.gene66062:CDS
ATAACTGTTCCAAAGACATT+AGG 0.411288 7.4:+44684250 None:intergenic
ACGGAACAAACTGTTGATAT+CGG 0.419099 7.4:-44684184 MS.gene66062:CDS
AAAGACCCCATGCCTAAGAT+TGG 0.437241 7.4:-44683979 MS.gene66062:CDS
AGCTTCAATGTTGGACTCCT+CGG 0.437458 7.4:+44684633 None:intergenic
TAAAGATAAAGTCTGTCAAA+GGG 0.446344 7.4:+44684034 None:intergenic
GAAGAAAAGGTCGTTACAAT+TGG 0.449008 7.4:-44683358 MS.gene66062:CDS
ACGTTTCCAATCTTAGGCAT+GGG 0.455062 7.4:+44683973 None:intergenic
AGATATTCTCAAGTTGTCAT+TGG 0.455399 7.4:-44684067 MS.gene66062:CDS
GTCTCTGCATTCTAAAAGCT+TGG 0.457550 7.4:-44683236 MS.gene66062:CDS
CAAAGTTACAGTGAGAGTTA+TGG 0.458786 7.4:-44684764 MS.gene66062:CDS
GATGTCACGTTTCCAATCTT+AGG 0.459654 7.4:+44683967 None:intergenic
ACTAAATGATGTGGAAGAAA+AGG 0.460825 7.4:-44683371 MS.gene66062:CDS
TTAAAGATAAAGTCTGTCAA+AGG 0.461908 7.4:+44684033 None:intergenic
GTAGTGAGAAGAAAATCAAC+TGG 0.473144 7.4:-44683916 MS.gene66062:CDS
TAAGAATGACAATAATAGTC+AGG 0.476190 7.4:+44683631 None:intergenic
AGCCCAAATTGTGCAGCAAT+GGG 0.483497 7.4:+44683691 None:intergenic
GGAGTATTGCATATGCTTGA+AGG 0.483557 7.4:-44683820 MS.gene66062:CDS
AGTCGTGGAGAATTTGCAAA+AGG 0.484219 7.4:-44683484 MS.gene66062:CDS
AATGTCTGAGTTCTGGAGTC+GGG 0.488087 7.4:-44684324 MS.gene66062:CDS
GCATTTGAAGCAGATAGCTT+AGG 0.492641 7.4:+44683511 None:intergenic
CACGTTTCCAATCTTAGGCA+TGG 0.493866 7.4:+44683972 None:intergenic
CCACAGATGAAGTGTTTCAT+GGG 0.494109 7.4:+44684454 None:intergenic
TGTCATTCTTACATTCATGA+TGG 0.498732 7.4:-44683619 MS.gene66062:CDS
AAGCCCAAATTGTGCAGCAA+TGG 0.499669 7.4:+44683690 None:intergenic
AAATTTCACAGCTTCAATGT+TGG 0.508734 7.4:+44684624 None:intergenic
GAATTGGAATTGTGTTAGAA+AGG 0.516218 7.4:-44684431 MS.gene66062:CDS
CTTGCAAGGAAATGCTACTT+AGG 0.520537 7.4:-44684537 MS.gene66062:CDS
CATTTCTCGTCCTTAATGAT+CGG 0.522608 7.4:+44683168 None:intergenic
AAATGTTTCACTAAATGATG+TGG 0.528686 7.4:-44683380 MS.gene66062:CDS
AGGAATCAATTGTGCAGTTG+CGG 0.529047 7.4:-44684382 MS.gene66062:CDS
TTTCTAACCTTCCCTTTGGG+AGG 0.538966 7.4:-44683841 MS.gene66062:CDS
TGTTGATATCGGCAAGAAAG+AGG 0.542165 7.4:-44684173 MS.gene66062:CDS
TTTGTATGCTGAGGCAGGGA+AGG 0.547892 7.4:-44684719 MS.gene66062:CDS
GAGTTATGGTGGACAAAGAA+AGG 0.547994 7.4:-44684750 MS.gene66062:CDS
AGTCTTGCAATAGTACCTAA+AGG 0.548353 7.4:+44684661 None:intergenic
GAACTCAGACATTCTGGCGG+TGG 0.548443 7.4:+44684334 None:intergenic
GTCGTGGAGAATTTGCAAAA+GGG 0.558749 7.4:-44683483 MS.gene66062:CDS
AAATATTCTGACATGGTCGT+TGG 0.558790 7.4:-44684006 MS.gene66062:CDS
ATAACTTTCGGTACTCAACT+CGG 0.559449 7.4:+44683753 None:intergenic
TAAATGTGATATAGCAGTGA+AGG 0.560380 7.4:+44683411 None:intergenic
AATTGTGTTAGAAAGGAAAG+TGG 0.561544 7.4:-44684424 MS.gene66062:CDS
GTGCAGTTGCGGAAAAGTAA+TGG 0.563601 7.4:-44684371 MS.gene66062:CDS
ATACATGGTGACAGTTGACT+TGG 0.564692 7.4:-44683452 MS.gene66062:CDS
GGTCGTTACAATTGGTCTGA+AGG 0.566868 7.4:-44683350 MS.gene66062:CDS
AAAAGGGCCATCAGTATACA+TGG 0.572178 7.4:-44683467 MS.gene66062:CDS
GAATGTCTGAGTTCTGGAGT+CGG 0.573248 7.4:-44684325 MS.gene66062:CDS
ATACAACTACTTCACAAGCT+AGG 0.584172 7.4:-44684229 MS.gene66062:CDS
CCATGAAACACTTCATCTGT+GGG 0.584274 7.4:-44684453 MS.gene66062:CDS
CCAAATTGTGCAGCAATGGG+AGG 0.586549 7.4:+44683694 None:intergenic
ATTGGAAACGTGACATCCGA+AGG 0.589163 7.4:-44683961 MS.gene66062:CDS
ATTGTGTTAGAAAGGAAAGT+GGG 0.590893 7.4:-44684423 MS.gene66062:CDS
TATGCAATACTCCTCCCAAA+GGG 0.596766 7.4:+44683830 None:intergenic
TGGAAACGTGACATCCGAAG+GGG 0.597792 7.4:-44683959 MS.gene66062:CDS
ATATGCAATACTCCTCCCAA+AGG 0.601559 7.4:+44683829 None:intergenic
CCCATGAAACACTTCATCTG+TGG 0.601605 7.4:-44684454 MS.gene66062:CDS
CGTTTCCAATCTTAGGCATG+GGG 0.601735 7.4:+44683974 None:intergenic
TCTATGGACTCGTACTTGCA+AGG 0.607409 7.4:-44684551 MS.gene66062:CDS
CAAATTGTGCAGCAATGGGA+GGG 0.615304 7.4:+44683695 None:intergenic
ACTGTCACCATGTATACTGA+TGG 0.619928 7.4:+44683460 None:intergenic
CGTTACAATTGGTCTGAAGG+AGG 0.622228 7.4:-44683347 MS.gene66062:intron
TTGGAAACGTGACATCCGAA+GGG 0.625254 7.4:-44683960 MS.gene66062:CDS
AGTTACAGTGAGAGTTATGG+TGG 0.625779 7.4:-44684761 MS.gene66062:CDS
CAATACTCCTCCCAAAGGGA+AGG 0.632069 7.4:+44683834 None:intergenic
ATAGCAGTGAAGGATGACAT+TGG 0.632785 7.4:+44683421 None:intergenic
TAACTCACTGTATCAAAGTG+TGG 0.633194 7.4:-44684593 MS.gene66062:CDS
GCTTCAAATGCATCAAGTCG+TGG 0.633999 7.4:-44683499 MS.gene66062:CDS
CCTTAATGATCGGTATGAGT+CGG 0.634454 7.4:+44683178 None:intergenic
AAAGATAAAGTCTGTCAAAG+GGG 0.650333 7.4:+44684035 None:intergenic
TATTGCAAGACTAGTGTCCG+AGG 0.689182 7.4:-44684650 MS.gene66062:CDS
CCAGAACTCAGACATTCTGG+CGG 0.715730 7.4:+44684331 None:intergenic
GGAAACGTGACATCCGAAGG+GGG 0.720105 7.4:-44683958 MS.gene66062:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTAAATATTTTTACTTTTGC+AGG - chr7.4:44683869-44683888 MS.gene66062:CDS 15.0%
!! AAAGTTTGTACTTCTAAATT+TGG - chr7.4:44684424-44684443 MS.gene66062:CDS 20.0%
!! ATCTTGATGAAAAATATCTA+TGG - chr7.4:44683396-44683415 MS.gene66062:CDS 20.0%
!! TAAAAAGAAATATTCTGACA+TGG - chr7.4:44683950-44683969 MS.gene66062:CDS 20.0%
!! TAATCTCGAAATATCTTAAA+GGG - chr7.4:44684234-44684253 MS.gene66062:CDS 20.0%
!! TTAATCTCGAAATATCTTAA+AGG - chr7.4:44684233-44684252 MS.gene66062:CDS 20.0%
!! TTTCGAGATTAAATAACTTT+CGG + chr7.4:44684225-44684244 None:intergenic 20.0%
! AAATGTTTCACTAAATGATG+TGG - chr7.4:44684583-44684602 MS.gene66062:CDS 25.0%
! TAAAGATAAAGTCTGTCAAA+GGG + chr7.4:44683932-44683951 None:intergenic 25.0%
! TAAGAATGACAATAATAGTC+AGG + chr7.4:44684335-44684354 None:intergenic 25.0%
! TACAACCAAATTATTCCAAT+TGG - chr7.4:44684296-44684315 MS.gene66062:CDS 25.0%
! TTAAAGATAAAGTCTGTCAA+AGG + chr7.4:44683933-44683952 None:intergenic 25.0%
AAAGATAAAGTCTGTCAAAG+GGG + chr7.4:44683931-44683950 None:intergenic 30.0%
AAATTTCACAGCTTCAATGT+TGG + chr7.4:44683342-44683361 None:intergenic 30.0%
AACATTGAAGCTGTGAAATT+TGG - chr7.4:44683341-44683360 MS.gene66062:intron 30.0%
AATTGTGTTAGAAAGGAAAG+TGG - chr7.4:44683539-44683558 MS.gene66062:CDS 30.0%
ACTAAATGATGTGGAAGAAA+AGG - chr7.4:44684592-44684611 MS.gene66062:CDS 30.0%
ATAACTGTTCCAAAGACATT+AGG + chr7.4:44683716-44683735 None:intergenic 30.0%
ATTGTGTTAGAAAGGAAAGT+GGG - chr7.4:44683540-44683559 MS.gene66062:CDS 30.0%
CTACTCCAATTGGAATAATT+TGG + chr7.4:44684304-44684323 None:intergenic 30.0%
GAATTGGAATTGTGTTAGAA+AGG - chr7.4:44683532-44683551 MS.gene66062:CDS 30.0%
TAAATGTGATATAGCAGTGA+AGG + chr7.4:44684555-44684574 None:intergenic 30.0%
TAAGCTTCCATGAAATTTCT+TGG + chr7.4:44683452-44683471 None:intergenic 30.0%
TGTCATTCTTACATTCATGA+TGG - chr7.4:44684344-44684363 MS.gene66062:CDS 30.0%
TTGTCTGTTAACATATTGCA+GGG - chr7.4:44684705-44684724 MS.gene66062:CDS 30.0%
! AGATATTCTCAAGTTGTCAT+TGG - chr7.4:44683896-44683915 MS.gene66062:CDS 30.0%
AAATATTCTGACATGGTCGT+TGG - chr7.4:44683957-44683976 MS.gene66062:CDS 35.0%
AAGCTAGGAATCTCTGATAT+TGG - chr7.4:44683749-44683768 MS.gene66062:CDS 35.0%
ACGGAACAAACTGTTGATAT+CGG - chr7.4:44683779-44683798 MS.gene66062:CDS 35.0%
ACTTAGGCCAAGAAATTTCA+TGG - chr7.4:44683442-44683461 MS.gene66062:CDS 35.0%
AGCTTCTTAACATTGCCTTT+AGG - chr7.4:44683287-44683306 MS.gene66062:intron 35.0%
AGTCTTGCAATAGTACCTAA+AGG + chr7.4:44683305-44683324 None:intergenic 35.0%
ATAACTTTCGGTACTCAACT+CGG + chr7.4:44684213-44684232 None:intergenic 35.0%
ATACAACTACTTCACAAGCT+AGG - chr7.4:44683734-44683753 MS.gene66062:CDS 35.0%
CAAAGTTACAGTGAGAGTTA+TGG - chr7.4:44683199-44683218 MS.gene66062:CDS 35.0%
CATTTCTCGTCCTTAATGAT+CGG + chr7.4:44684798-44684817 None:intergenic 35.0%
CTTGTCTGTTAACATATTGC+AGG - chr7.4:44684704-44684723 MS.gene66062:CDS 35.0%
GAAGAAAAGGTCGTTACAAT+TGG - chr7.4:44684605-44684624 MS.gene66062:CDS 35.0%
GCAAATTAATGAAAACGCAG+TGG + chr7.4:44684646-44684665 None:intergenic 35.0%
GGAACTGTTTGAGCTTATTT+AGG - chr7.4:44683561-44683580 MS.gene66062:CDS 35.0%
GTAGTGAGAAGAAAATCAAC+TGG - chr7.4:44684047-44684066 MS.gene66062:CDS 35.0%
TAACTCACTGTATCAAAGTG+TGG - chr7.4:44683370-44683389 MS.gene66062:CDS 35.0%
TATGTGATGCCTAATGTCTT+TGG - chr7.4:44683704-44683723 MS.gene66062:CDS 35.0%
TCAACTTCTGCTATGTCAAT+TGG - chr7.4:44684756-44684775 MS.gene66062:CDS 35.0%
! AGTTTTCTAACCTTCCCTTT+GGG - chr7.4:44684119-44684138 MS.gene66062:intron 35.0%
! CAAACTTTTCAGCAGGATAA+CGG + chr7.4:44684412-44684431 None:intergenic 35.0%
!! AAGATTTTGTTTGCTGAAGC+AGG - chr7.4:44684071-44684090 MS.gene66062:intron 35.0%
!! AGAAGTACAAACTTTTCAGC+AGG + chr7.4:44684419-44684438 None:intergenic 35.0%
!! GAACAAAGTTTTGTATGCTG+AGG - chr7.4:44683235-44683254 MS.gene66062:CDS 35.0%
AAAAGGGCCATCAGTATACA+TGG - chr7.4:44684496-44684515 MS.gene66062:CDS 40.0%
AACACTTCATCTGTGGGAAT+TGG - chr7.4:44683516-44683535 MS.gene66062:CDS 40.0%
ACGTTTCCAATCTTAGGCAT+GGG + chr7.4:44683993-44684012 None:intergenic 40.0%
ACTGTCACCATGTATACTGA+TGG + chr7.4:44684506-44684525 None:intergenic 40.0%
AGGAATCAATTGTGCAGTTG+CGG - chr7.4:44683581-44683600 MS.gene66062:CDS 40.0%
AGTCGTGGAGAATTTGCAAA+AGG - chr7.4:44684479-44684498 MS.gene66062:CDS 40.0%
AGTTACAGTGAGAGTTATGG+TGG - chr7.4:44683202-44683221 MS.gene66062:CDS 40.0%
ATACATGGTGACAGTTGACT+TGG - chr7.4:44684511-44684530 MS.gene66062:CDS 40.0%
ATAGCAGTGAAGGATGACAT+TGG + chr7.4:44684545-44684564 None:intergenic 40.0%
ATATGCAATACTCCTCCCAA+AGG + chr7.4:44684137-44684156 None:intergenic 40.0%
CCATGAAACACTTCATCTGT+GGG - chr7.4:44683510-44683529 MS.gene66062:CDS 40.0%
CCTTAATGATCGGTATGAGT+CGG + chr7.4:44684788-44684807 None:intergenic 40.0%
CTCTGATATTGGCGCTATTA+CGG - chr7.4:44683760-44683779 MS.gene66062:CDS 40.0%
GATGTCACGTTTCCAATCTT+AGG + chr7.4:44683999-44684018 None:intergenic 40.0%
GTCGTGGAGAATTTGCAAAA+GGG - chr7.4:44684480-44684499 MS.gene66062:CDS 40.0%
TATGCAATACTCCTCCCAAA+GGG + chr7.4:44684136-44684155 None:intergenic 40.0%
TGTTGATATCGGCAAGAAAG+AGG - chr7.4:44683790-44683809 MS.gene66062:CDS 40.0%
! CAGTTTTCTAACCTTCCCTT+TGG - chr7.4:44684118-44684137 MS.gene66062:intron 40.0%
! CCACAGATGAAGTGTTTCAT+GGG + chr7.4:44683512-44683531 None:intergenic 40.0%
! CTTGCAAGGAAATGCTACTT+AGG - chr7.4:44683426-44683445 MS.gene66062:CDS 40.0%
! GCATTTGAAGCAGATAGCTT+AGG + chr7.4:44684455-44684474 None:intergenic 40.0%
! GTCTCTGCATTCTAAAAGCT+TGG - chr7.4:44684727-44684746 MS.gene66062:CDS 40.0%
!! AAAGTTTTGTATGCTGAGGC+AGG - chr7.4:44683239-44683258 MS.gene66062:CDS 40.0%
!! AAGTTTTGTATGCTGAGGCA+GGG - chr7.4:44683240-44683259 MS.gene66062:CDS 40.0%
!! GAGTTATGGTGGACAAAGAA+AGG - chr7.4:44683213-44683232 MS.gene66062:CDS 40.0%
!! GGAGTATTGCATATGCTTGA+AGG - chr7.4:44684143-44684162 MS.gene66062:CDS 40.0%
AAAGACCCCATGCCTAAGAT+TGG - chr7.4:44683984-44684003 MS.gene66062:CDS 45.0%
AAGCCCAAATTGTGCAGCAA+TGG + chr7.4:44684276-44684295 None:intergenic 45.0%
ACTCCAGAACTCAGACATTC+TGG + chr7.4:44683638-44683657 None:intergenic 45.0%
AGCCCAAATTGTGCAGCAAT+GGG + chr7.4:44684275-44684294 None:intergenic 45.0%
AGCTTCAATGTTGGACTCCT+CGG + chr7.4:44683333-44683352 None:intergenic 45.0%
ATTGGAAACGTGACATCCGA+AGG - chr7.4:44684002-44684021 MS.gene66062:CDS 45.0%
CAAATTGTGCAGCAATGGGA+GGG + chr7.4:44684271-44684290 None:intergenic 45.0%
CACGTTTCCAATCTTAGGCA+TGG + chr7.4:44683994-44684013 None:intergenic 45.0%
CCCATGAAACACTTCATCTG+TGG - chr7.4:44683509-44683528 MS.gene66062:CDS 45.0%
CCGACTCATACCGATCATTA+AGG - chr7.4:44684785-44684804 MS.gene66062:CDS 45.0%
CGTTTCCAATCTTAGGCATG+GGG + chr7.4:44683992-44684011 None:intergenic 45.0%
CTCCCATTGCTGCACAATTT+GGG - chr7.4:44684270-44684289 MS.gene66062:CDS 45.0%
GCTTCAAATGCATCAAGTCG+TGG - chr7.4:44684464-44684483 MS.gene66062:CDS 45.0%
GTGCAGTTGCGGAAAAGTAA+TGG - chr7.4:44683592-44683611 MS.gene66062:CDS 45.0%
TATTGCAAGACTAGTGTCCG+AGG - chr7.4:44683313-44683332 MS.gene66062:intron 45.0%
TCTATGGACTCGTACTTGCA+AGG - chr7.4:44683412-44683431 MS.gene66062:CDS 45.0%
TTGGAAACGTGACATCCGAA+GGG - chr7.4:44684003-44684022 MS.gene66062:CDS 45.0%
TTTCTAACCTTCCCTTTGGG+AGG - chr7.4:44684122-44684141 MS.gene66062:intron 45.0%
! CCCACAGATGAAGTGTTTCA+TGG + chr7.4:44683513-44683532 None:intergenic 45.0%
! CGTTACAATTGGTCTGAAGG+AGG - chr7.4:44684616-44684635 MS.gene66062:CDS 45.0%
! GGTCGTTACAATTGGTCTGA+AGG - chr7.4:44684613-44684632 MS.gene66062:CDS 45.0%
!! AATGTCTGAGTTCTGGAGTC+GGG - chr7.4:44683639-44683658 MS.gene66062:CDS 45.0%
!! GAATGTCTGAGTTCTGGAGT+CGG - chr7.4:44683638-44683657 MS.gene66062:CDS 45.0%
!! TTCTGGAGTCGGGTTTGTTA+AGG - chr7.4:44683649-44683668 MS.gene66062:CDS 45.0%
AGATATCTGCCTACCCCCTT+CGG + chr7.4:44684021-44684040 None:intergenic 50.0%
CAATACTCCTCCCAAAGGGA+AGG + chr7.4:44684132-44684151 None:intergenic 50.0%
CCAAATTGTGCAGCAATGGG+AGG + chr7.4:44684272-44684291 None:intergenic 50.0%
CCAGAACTCAGACATTCTGG+CGG + chr7.4:44683635-44683654 None:intergenic 50.0%
CCTCCCATTGCTGCACAATT+TGG - chr7.4:44684269-44684288 MS.gene66062:CDS 50.0%
GGTGAGCAAGCTACTCCAAT+TGG + chr7.4:44684314-44684333 None:intergenic 50.0%
TGGAAACGTGACATCCGAAG+GGG - chr7.4:44684004-44684023 MS.gene66062:CDS 50.0%
TTTGTATGCTGAGGCAGGGA+AGG - chr7.4:44683244-44683263 MS.gene66062:intron 50.0%
CCGCCAGAATGTCTGAGTTC+TGG - chr7.4:44683632-44683651 MS.gene66062:CDS 55.0%
GAACTCAGACATTCTGGCGG+TGG + chr7.4:44683632-44683651 None:intergenic 55.0%
GGAAACGTGACATCCGAAGG+GGG - chr7.4:44684005-44684024 MS.gene66062:CDS 55.0%
ACGTGACATCCGAAGGGGGT+AGG - chr7.4:44684009-44684028 MS.gene66062:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 44683167 44684818 44683167 ID=MS.gene66062
chr7.4 mRNA 44683167 44684818 44683167 ID=MS.gene66062.t1;Parent=MS.gene66062
chr7.4 exon 44684128 44684818 44684128 ID=MS.gene66062.t1.exon1;Parent=MS.gene66062.t1
chr7.4 CDS 44684128 44684818 44684128 ID=cds.MS.gene66062.t1;Parent=MS.gene66062.t1
chr7.4 exon 44683348 44684087 44683348 ID=MS.gene66062.t1.exon2;Parent=MS.gene66062.t1
chr7.4 CDS 44683348 44684087 44683348 ID=cds.MS.gene66062.t1;Parent=MS.gene66062.t1
chr7.4 exon 44683167 44683259 44683167 ID=MS.gene66062.t1.exon3;Parent=MS.gene66062.t1
chr7.4 CDS 44683167 44683259 44683167 ID=cds.MS.gene66062.t1;Parent=MS.gene66062.t1
Gene Sequence

>MS.gene66062

ATGGCAGCTAGCAATGCAACTAAATCAGTTGACAAAGTTACAGTGAGAGTTATGGTGGACAAAGAAAGGAACAAAGTTTTGTATGCTGAGGCAGGGAAGGATTTTGTTGATGCTCTCTTCAGCTTCTTAACATTGCCTTTAGGTACTATTGCAAGACTAGTGTCCGAGGAGTCCAACATTGAAGCTGTGAAATTTGGCAGCATTAACTCACTGTATCAAAGTGTGGCAAATCTTGATGAAAAATATCTATGGACTCGTACTTGCAAGGAAATGCTACTTAGGCCAAGAAATTTCATGGAAGCTTATTGTCAGAAGATGAAACTGAATATCGACGACACAGAACCCATGAAACACTTCATCTGTGGGAATTGGAATTGTGTTAGAAAGGAAAGTGGGAACTGTTTGAGCTTATTTAGGAATCAATTGTGCAGTTGCGGAAAAGTAATGGACAAAGTATTATCTCCACCGCCAGAATGTCTGAGTTCTGGAGTCGGGTTTGTTAAGGAAACTGCTGCATTTATTATTTCTGACAATCTTTATGTGATGCCTAATGTCTTTGGAACAGTTATACAACTACTTCACAAGCTAGGAATCTCTGATATTGGCGCTATTACGGAACAAACTGTTGATATCGGCAAGAAAGAGGCATGCTTTCTTATGCAACTCTCTTCTGAAATATACTATCTATGCAGTTTATTATCATTAAATATTTTTACTTTTGCAGGTCATAGATATTCTCAAGTTGTCATTGGTCTCAAAGACCCCTTTGACAGACTTTATCTTTAAAAAGAAATATTCTGACATGGTCGTTGGTATCAAAGACCCCATGCCTAAGATTGGAAACGTGACATCCGAAGGGGGTAGGCAGATATCTGTGAAAGTAGTGAGAAGAAAATCAACTGGAAAGATTTTGTTTGCTGAAGCAGGAGATGATTTTATGAACTTTGTTTTCAGTTTTCTAACCTTCCCTTTGGGAGGAGTATTGCATATGCTTGAAGGTTTCTCTTCTTTAAACTGCATTGATAATTTATACAAAAGTGTCACCGAGTTGAGTACCGAAAGTTATTTAATCTCGAAATATCTTAAAGGGAAATTAATTAACCCTCCCATTGCTGCACAATTTGGGCTTTACAACCAAATTATTCCAATTGGAGTAGCTTGCTCACCTGACTATTATTGTCATTCTTACATTCATGATGGTCAGTATACTCGCGCACTAACTGATTCATACACGCATAATGTCCGTTATCCTGCTGAAAAGTTTGTACTTCTAAATTTGGTTGATCCTAAGCTATCTGCTTCAAATGCATCAAGTCGTGGAGAATTTGCAAAAGGGCCATCAGTATACATGGTGACAGTTGACTTGGTTATTACTCCAATGTCATCCTTCACTGCTATATCACATTTAAATAGTTCAAATGTTTCACTAAATGATGTGGAAGAAAAGGTCGTTACAATTGGTCTGAAGGAGGTAAGCCACTGCGTTTTCATTAATTTGCAATATATTTTCATTAATTTGCATGCGTTATTATAATGACTTGTCTGTTAACATATTGCAGGGTCTCTGCATTCTAAAAGCTTGGATGAACTCAACTTCTGCTATGTCAATTGGACTCAACCGACTCATACCGATCATTAAGGACGAGAAATGA
Protein sequence

>MS.gene66062.t1

MAASNATKSVDKVTVRVMVDKERNKVLYAEAGKDFVDALFSFLTLPLGTIARLVSEESNIEAVKFGSINSLYQSVANLDEKYLWTRTCKEMLLRPRNFMEAYCQKMKLNIDDTEPMKHFICGNWNCVRKESGNCLSLFRNQLCSCGKVMDKVLSPPPECLSSGVGFVKETAAFIISDNLYVMPNVFGTVIQLLHKLGISDIGAITEQTVDIGKKEACFLMQLSSEIYYLCNILKLSLVSKTPLTDFIFKKKYSDMVVGIKDPMPKIGNVTSEGGRQISVKVVRRKSTGKILFAEAGDDFMNFVFSFLTFPLGGVLHMLEGFSSLNCIDNLYKSVTELSTESYLISKYLKGKLINPPIAAQFGLYNQIIPIGVACSPDYYCHSYIHDGQYTRALTDSYTHNVRYPAEKFVLLNLVDPKLSASNASSRGEFAKGPSVYMVTVDLVITPMSSFTAISHLNSSNVSLNDVEEKVVTIGLKEGLCILKAWMNSTSAMSIGLNRLIPIIKDEK