AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055090

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055090.t1 MTR_7g066400 80.994 463 39 3 1 463 1 414 0.0 739
MS.gene055090.t1 MTR_1g041315 59.868 456 154 5 12 463 14 444 0.0 535
MS.gene055090.t1 MTR_7g066350 60.129 464 141 7 5 463 2 426 0.0 518
MS.gene055090.t1 MTR_7g066340 58.599 471 154 6 1 467 1 434 4.55e-179 510
MS.gene055090.t1 MTR_7g066260 55.224 469 171 6 2 463 3 439 2.33e-168 483
MS.gene055090.t1 MTR_7g066570 51.566 479 168 6 13 463 15 457 4.63e-149 437
MS.gene055090.t1 MTR_7g066570 27.962 211 131 7 12 211 257 457 2.41e-12 69.3
MS.gene055090.t1 MTR_7g012680 51.299 462 162 9 12 463 14 422 3.76e-140 410
MS.gene055090.t1 MTR_7g066360 49.680 469 183 10 2 463 4 426 1.61e-128 381
MS.gene055090.t1 MTR_7g066290 48.712 466 173 7 3 463 6 410 2.17e-127 377
MS.gene055090.t1 MTR_7g058710 44.668 497 198 8 1 463 1 454 3.29e-126 375
MS.gene055090.t1 MTR_7g066580 43.983 482 174 11 18 463 1 422 1.07e-120 360
MS.gene055090.t1 MTR_7g066410 40.323 496 236 8 12 463 10 489 8.32e-110 335
MS.gene055090.t1 MTR_7g066430 39.271 494 229 8 9 463 1 462 1.95e-108 330
MS.gene055090.t1 MTR_7g066430 27.397 219 137 7 7 211 252 462 6.23e-15 77.4
MS.gene055090.t1 MTR_7g058700 44.270 445 162 10 26 463 533 898 2.14e-106 337
MS.gene055090.t1 MTR_2g029400 40.166 483 162 9 12 467 14 396 1.06e-104 318
MS.gene055090.t1 MTR_7g066280 44.836 426 123 7 91 463 1 367 1.56e-104 317
MS.gene055090.t1 MTR_7g063900 36.874 499 239 12 1 463 1 459 6.57e-89 280
MS.gene055090.t1 MTR_7g063660 36.157 484 233 14 12 463 9 448 4.76e-88 277
MS.gene055090.t1 MTR_7g062300 37.143 490 241 14 1 463 1 450 2.52e-87 275
MS.gene055090.t1 MTR_7g062280 36.437 494 231 15 12 463 10 462 8.21e-87 275
MS.gene055090.t1 MTR_7g062280 27.941 204 138 4 11 211 265 462 5.70e-15 77.4
MS.gene055090.t1 MTR_7g066480 39.216 459 204 8 12 467 16 402 8.53e-87 272
MS.gene055090.t1 MTR_7g063890 37.195 492 226 14 12 463 27 475 5.14e-82 262
MS.gene055090.t1 MTR_7g063880 36.842 494 226 16 1 463 1 439 1.40e-78 252
MS.gene055090.t1 MTR_7g063830 35.948 459 240 11 13 467 11 419 1.53e-78 251
MS.gene055090.t1 MTR_7g066490 38.210 458 198 12 11 467 15 388 4.81e-77 247
MS.gene055090.t1 MTR_7g063920 34.328 469 219 7 12 463 11 407 1.45e-75 243
MS.gene055090.t1 MTR_7g063920 27.143 210 126 8 11 211 216 407 4.41e-12 68.2
MS.gene055090.t1 MTR_1g014060 58.525 217 85 4 21 235 9 222 4.80e-73 236
MS.gene055090.t1 MTR_1g014060 48.077 156 66 3 319 463 210 361 9.48e-35 134
MS.gene055090.t1 MTR_4g019310 32.359 513 252 15 1 464 1 467 1.04e-72 238
MS.gene055090.t1 MTR_7g063820 34.545 495 252 12 1 463 1 455 5.45e-72 236
MS.gene055090.t1 MTR_7g063820 28.634 227 134 7 2 213 244 457 7.26e-12 67.8
MS.gene055090.t1 MTR_3g007740 34.664 476 222 13 12 463 9 419 3.31e-70 230
MS.gene055090.t1 MTR_7g063840 34.426 488 251 14 1 463 1 444 5.76e-70 230
MS.gene055090.t1 MTR_7g063840 24.138 232 131 7 2 213 240 446 1.67e-11 66.6
MS.gene055090.t1 MTR_7g066310 59.474 190 67 2 274 463 181 360 1.12e-69 227
MS.gene055090.t1 MTR_7g066310 58.333 204 54 5 12 212 7 182 1.66e-59 201
MS.gene055090.t1 MTR_3g065200 32.845 478 213 9 12 463 3 398 1.22e-69 229
MS.gene055090.t1 MTR_4g017830 32.495 517 258 15 1 464 1 479 4.15e-67 224
MS.gene055090.t1 MTR_4g019340 32.454 493 252 12 13 464 39 491 2.14e-64 216
MS.gene055090.t1 MTR_4g019340 35.577 104 60 2 11 114 302 398 7.01e-12 67.8
MS.gene055090.t1 MTR_4g017610 30.832 493 253 13 14 466 15 459 1.99e-62 210
MS.gene055090.t1 MTR_4g017410 33.464 511 245 20 5 467 2 465 2.42e-62 211
MS.gene055090.t1 MTR_7g066680 44.622 251 113 3 238 464 37 285 2.70e-61 203
MS.gene055090.t1 MTR_7g066680 27.376 263 160 10 10 255 84 332 9.93e-14 72.8
MS.gene055090.t1 MTR_7g063670 32.700 474 243 14 13 467 16 432 8.77e-60 203
MS.gene055090.t1 MTR_7g063670 27.885 208 121 9 6 211 248 428 1.32e-12 70.1
MS.gene055090.t1 MTR_4g017440 32.347 507 247 17 13 464 15 480 1.32e-59 204
MS.gene055090.t1 MTR_4g017470 29.528 508 230 13 13 464 13 448 7.79e-52 182
MS.gene055090.t1 MTR_4g017470 25.000 224 136 6 21 222 243 456 3.74e-13 71.6
MS.gene055090.t1 MTR_4g017550 29.314 481 238 17 39 464 18 451 3.57e-43 159
MS.gene055090.t1 MTR_4g017550 28.879 232 107 8 21 222 256 459 8.88e-12 67.4
MS.gene055090.t1 MTR_7g062270 46.746 169 88 2 13 180 11 178 3.11e-40 149
MS.gene055090.t1 MTR_2g067310 43.062 209 60 6 1 194 26 190 1.40e-34 129
MS.gene055090.t1 MTR_7g063720 35.870 184 106 3 289 463 23 203 1.18e-31 122
MS.gene055090.t1 MTR_7g063720 25.234 214 117 6 10 211 21 203 2.88e-15 75.5
MS.gene055090.t1 MTR_8g023240 27.042 355 204 11 1 350 29 333 3.96e-27 114
MS.gene055090.t1 MTR_7g066390 46.269 134 37 2 330 463 1 99 2.78e-26 104
MS.gene055090.t1 MTR_8g445860 28.095 210 134 4 12 211 13 215 2.44e-20 90.1
MS.gene055090.t1 MTR_7g100420 31.128 257 136 7 235 463 131 374 5.30e-20 92.0
MS.gene055090.t1 MTR_7g100420 59.322 59 20 1 13 67 40 98 1.90e-12 69.3
MS.gene055090.t1 MTR_4g019240 46.154 104 44 4 13 108 14 113 3.30e-19 85.5
MS.gene055090.t1 MTR_1g115440 29.817 218 123 7 12 211 11 216 7.52e-19 85.9
MS.gene055090.t1 MTR_0150s0010 27.962 211 136 3 12 211 10 215 6.93e-17 80.5
MS.gene055090.t1 MTR_1g115450 33.613 119 63 2 11 129 6 108 5.22e-15 72.4
MS.gene055090.t1 MTR_1g115455 34.783 138 70 5 5 128 2 133 1.34e-13 70.5
MS.gene055090.t1 MTR_1g115470 38.614 101 51 2 1 101 1 90 1.27e-12 70.1
MS.gene055090.t1 MTR_0150s0030 37.363 91 51 2 6 95 2 87 8.43e-12 64.7
MS.gene055090.t1 MTR_7g063870 62.500 48 18 0 13 60 32 79 8.73e-12 65.9
MS.gene055090.t1 MTR_7g063690 66.667 48 16 0 13 60 13 60 1.38e-11 65.1
MS.gene055090.t1 MTR_8g445920 39.241 79 43 1 12 90 10 83 8.81e-11 59.3
MS.gene055090.t1 MTR_8g044890 39.241 79 43 1 12 90 10 83 8.81e-11 59.3
MS.gene055090.t1 MTR_8g445910 37.363 91 51 2 6 95 2 87 9.18e-11 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055090.t1 AT5G01120 28.715 498 269 12 13 464 10 467 2.59e-52 184
MS.gene055090.t1 AT3G09140 29.435 496 294 11 12 460 9 495 4.12e-50 179
MS.gene055090.t1 AT5G43240 28.715 498 273 14 13 464 10 471 4.04e-48 173
MS.gene055090.t1 AT5G43240 28.715 498 273 14 13 464 10 471 4.04e-48 173
MS.gene055090.t1 AT5G43240 28.715 498 273 14 13 464 10 471 4.04e-48 173
MS.gene055090.t1 AT3G09110 30.473 338 204 3 15 351 12 319 1.42e-45 162
MS.gene055090.t1 AT5G01150 29.314 481 274 12 15 464 12 457 1.81e-44 163
MS.gene055090.t1 AT3G09120 31.287 342 191 6 12 343 6 313 1.08e-43 156
MS.gene055090.t1 AT5G01130 27.489 462 284 10 12 467 9 425 2.94e-43 159
MS.gene055090.t1 AT3G09140 27.677 495 276 11 12 460 9 467 5.09e-43 159
MS.gene055090.t1 AT5G01140 26.695 472 262 9 15 460 12 425 1.17e-38 146
MS.gene055090.t1 AT5G01140 27.230 213 118 7 13 212 241 429 1.48e-11 66.6
MS.gene055090.t1 AT5G37320 26.804 485 287 15 11 464 10 457 1.65e-36 140
MS.gene055090.t1 AT5G43240 25.000 332 186 9 164 464 28 327 4.87e-14 73.9

Find 81 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGAAATCGTTTGGAATTT+TGG 0.040096 7.4:+38391321 MS.gene055090:CDS
CTCTTTCTTCTACATCATTA+AGG 0.157802 7.4:-38391859 None:intergenic
GATCCCAAATCCCCTATTTC+TGG 0.202846 7.4:+38391731 MS.gene055090:CDS
GATAATTGCACAAGAGAAAA+TGG 0.203532 7.4:+38390885 MS.gene055090:CDS
CTGAGAAATCCTCCAGAAAT+AGG 0.208530 7.4:-38391743 None:intergenic
CTTTGTCCACCATAAATGTT+AGG 0.244452 7.4:-38390557 None:intergenic
TCCTCCAGAAATAGGGGATT+TGG 0.248070 7.4:-38391735 None:intergenic
AGTCCAATGTCATCAATTTC+TGG 0.262917 7.4:+38391806 MS.gene055090:CDS
CAAAATTCCAAACGATTTCT+TGG 0.266858 7.4:-38391320 None:intergenic
TAAGCTTCCATGGAGTTTCT+AGG 0.278164 7.4:-38390798 None:intergenic
AAACTTGTTCCAAGATGATT+AGG 0.308810 7.4:-38391050 None:intergenic
ATTGAGTAGCATTTCTTTGC+AGG 0.317151 7.4:-38390775 None:intergenic
CGTATCTAAAGAGTCAAATA+TGG 0.342580 7.4:+38390674 MS.gene055090:CDS
TGAGTCCTGACAGGTGTTTA+AGG 0.352622 7.4:+38391564 MS.gene055090:CDS
TGAGAAATCCTCCAGAAATA+GGG 0.353661 7.4:-38391742 None:intergenic
TTTAGACCCAAGAAATCGTT+TGG 0.354287 7.4:+38391313 MS.gene055090:CDS
GGTACTATGCAAGTACATTC+AGG 0.364581 7.4:+38390907 MS.gene055090:CDS
TCTTTCTTCTACATCATTAA+GGG 0.383547 7.4:-38391858 None:intergenic
CCTCCAGAAATAGGGGATTT+GGG 0.383622 7.4:-38391734 None:intergenic
TTTGTCAGTCCTAATCATCT+TGG 0.384248 7.4:+38391041 MS.gene055090:CDS
TCTCACCAATCGGTAATATC+TGG 0.394425 7.4:-38391649 None:intergenic
AAAATTCCAAACGATTTCTT+GGG 0.400983 7.4:-38391319 None:intergenic
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.4:+38391071 MS.gene055090:CDS
GAAGAAAGAGTCATCAGAAT+TGG 0.409170 7.4:+38391872 MS.gene055090:CDS
CAGAGGGCCAACGTCGTTCA+TGG 0.410417 7.4:+38391763 MS.gene055090:CDS
GTCAGACTTTATCTTTGAAA+AGG 0.412577 7.4:+38391274 MS.gene055090:CDS
AAGATTGTCAGAAATTATAA+AGG 0.433322 7.4:-38391018 None:intergenic
AATATGGAAGCCGTGAGGTT+TGG 0.437074 7.4:+38390690 MS.gene055090:CDS
ATCTTGATGAGAAGTATCTA+TGG 0.452896 7.4:+38390745 MS.gene055090:CDS
ATTGGTGAGACGAACTCATC+TGG 0.459483 7.4:+38391662 MS.gene055090:CDS
TTTGTCCACCATAAATGTTA+GGG 0.465766 7.4:-38390556 None:intergenic
CGAAAATCCACTACAAAGAA+TGG 0.468030 7.4:+38390975 MS.gene055090:CDS
TCATCCTCACAGAGAAAGAA+AGG 0.495444 7.4:-38390864 None:intergenic
AATTGGCGTGAAGGAGGTAA+AGG 0.496520 7.4:+38391889 MS.gene055090:CDS
AACAAAGCCATTCTTTGTAG+TGG 0.497094 7.4:-38390982 None:intergenic
TGCGTATTTAGAAAGAATGA+AGG 0.499246 7.4:+38391832 MS.gene055090:CDS
CGTTAACATCAGCAAGAAAG+AGG 0.509174 7.4:+38391127 MS.gene055090:CDS
CATTTATGGTGGACAAAGAA+AGG 0.510553 7.4:+38390562 MS.gene055090:CDS
ATAATTGCACAAGAGAAAAT+GGG 0.513938 7.4:+38390886 MS.gene055090:CDS
CTTTCTTCTACATCATTAAG+GGG 0.514709 7.4:-38391857 None:intergenic
GCCAATGCGTCAGATAATCT+AGG 0.519694 7.4:+38390522 MS.gene055090:CDS
ACCTAGATTATCTGACGCAT+TGG 0.523086 7.4:-38390523 None:intergenic
GCTTCTTGACATTACCTCTA+GGG 0.524982 7.4:+38390637 MS.gene055090:CDS
ATTGGCGTGAAGGAGGTAAA+GGG 0.533357 7.4:+38391890 MS.gene055090:CDS
TTGGCATGCATCTTGAACTC+AGG 0.536811 7.4:+38391624 MS.gene055090:CDS
AGCTTCTTGACATTACCTCT+AGG 0.539034 7.4:+38390636 MS.gene055090:CDS
GATGAGTTCGTCTCACCAAT+CGG 0.540361 7.4:-38391659 None:intergenic
TACCATTCCGCTGGGTGGAG+TGG 0.541850 7.4:+38391475 MS.gene055090:CDS
CTTGCCTTTCTTTCTCTGTG+AGG 0.544107 7.4:+38390860 MS.gene055090:CDS
CAAAGGAGACTTTGAGAGCA+AGG 0.550620 7.4:-38391252 None:intergenic
AAAGTTCTATATGCTGAGGC+AGG 0.554367 7.4:+38390588 MS.gene055090:CDS
TTTCTGGAGGATTTCTCAGA+GGG 0.555601 7.4:+38391747 MS.gene055090:CDS
TGGCTATTTCATGCCCTGCA+AGG 0.559659 7.4:+38391682 MS.gene055090:CDS
TGTGACCTTAAACACCTGTC+AGG 0.562502 7.4:-38391569 None:intergenic
GTACTATGCAAGTACATTCA+GGG 0.562553 7.4:+38390908 MS.gene055090:CDS
AGACCAGAAATTGATGACAT+TGG 0.564415 7.4:-38391809 None:intergenic
GAGAAATCCTCCAGAAATAG+GGG 0.567664 7.4:-38391741 None:intergenic
GGAGTGGTAATCATGTTTGA+AGG 0.570563 7.4:+38391491 MS.gene055090:CDS
ACTCAATCCTAGAAACTCCA+TGG 0.571002 7.4:+38390791 MS.gene055090:CDS
TATTGACTCCAAGCTTCTGA+AGG 0.571942 7.4:-38391079 None:intergenic
ATCTCATCAGATTCATCGCA+CGG 0.582254 7.4:-38391362 None:intergenic
CCCAAATCCCCTATTTCTGG+AGG 0.587988 7.4:+38391734 MS.gene055090:CDS
TACCACTCCACCCAGCGGAA+TGG 0.593322 7.4:-38391477 None:intergenic
AGTCATCAGAATTGGCGTGA+AGG 0.596722 7.4:+38391880 MS.gene055090:CDS
TTTCTTACCATTCCGCTGGG+TGG 0.597880 7.4:+38391470 MS.gene055090:CDS
CATCAGAATTGGCGTGAAGG+AGG 0.599170 7.4:+38391883 MS.gene055090:CDS
AGACTAAGTGAGCCACAAGT+TGG 0.600780 7.4:+38391605 MS.gene055090:CDS
TCAAAGATAAAGTCTGACAA+AGG 0.601732 7.4:-38391269 None:intergenic
TCAAGATGCATGCCAACTTG+TGG 0.608242 7.4:-38391617 None:intergenic
ATTTCTGGAGGATTTCTCAG+AGG 0.613319 7.4:+38391746 MS.gene055090:CDS
GTGCGATGAATCTGATGAGA+TGG 0.616494 7.4:+38391364 MS.gene055090:CDS
GAAGAAAGTTCTATATGCTG+AGG 0.619886 7.4:+38390584 MS.gene055090:CDS
TGACTGAGTTGAGTCCTGAC+AGG 0.635922 7.4:+38391555 MS.gene055090:CDS
TTGTCCACCATAAATGTTAG+GGG 0.641440 7.4:-38390555 None:intergenic
GCTGATGCTGCCAAACCTCA+CGG 0.652909 7.4:-38390700 None:intergenic
AGGAACCAGATATTACCGAT+TGG 0.659517 7.4:+38391644 MS.gene055090:CDS
TGTCCACCATAAATGTTAGG+GGG 0.661663 7.4:-38390554 None:intergenic
TCAGTCACCATGAACGACGT+TGG 0.688460 7.4:-38391770 None:intergenic
AGTCTAGCAATAGTCCCTAG+AGG 0.713115 7.4:-38390651 None:intergenic
ATGATTACCACTCCACCCAG+CGG 0.746322 7.4:-38391482 None:intergenic
AGTCAAATATGGAAGCCGTG+AGG 0.747088 7.4:+38390685 MS.gene055090:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGATTGTCAGAAATTATAA+AGG - chr7.4:38391021-38391040 None:intergenic 20.0%
!!! TTTGAAAAGGAATATTTTGT+TGG + chr7.4:38391287-38391306 MS.gene055090:CDS 20.0%
! AAAATTCCAAACGATTTCTT+GGG - chr7.4:38391322-38391341 None:intergenic 25.0%
! ATAATTGCACAAGAGAAAAT+GGG + chr7.4:38390886-38390905 MS.gene055090:CDS 25.0%
! TCTTTCTTCTACATCATTAA+GGG - chr7.4:38391861-38391880 None:intergenic 25.0%
CAAAATTCCAAACGATTTCT+TGG - chr7.4:38391323-38391342 None:intergenic 30.0%
CGTATCTAAAGAGTCAAATA+TGG + chr7.4:38390674-38390693 MS.gene055090:CDS 30.0%
CTCTTTCTTCTACATCATTA+AGG - chr7.4:38391862-38391881 None:intergenic 30.0%
CTTTCTTCTACATCATTAAG+GGG - chr7.4:38391860-38391879 None:intergenic 30.0%
GATAATTGCACAAGAGAAAA+TGG + chr7.4:38390885-38390904 MS.gene055090:CDS 30.0%
TCAAAGATAAAGTCTGACAA+AGG - chr7.4:38391272-38391291 None:intergenic 30.0%
TGCGTATTTAGAAAGAATGA+AGG + chr7.4:38391832-38391851 MS.gene055090:CDS 30.0%
TTTGTCCACCATAAATGTTA+GGG - chr7.4:38390559-38390578 None:intergenic 30.0%
! AAACTTGTTCCAAGATGATT+AGG - chr7.4:38391053-38391072 None:intergenic 30.0%
! GTCAGACTTTATCTTTGAAA+AGG + chr7.4:38391274-38391293 MS.gene055090:CDS 30.0%
!! AATCGTTTGGAATTTTGGAT+AGG + chr7.4:38391326-38391345 MS.gene055090:CDS 30.0%
!! ATCTTGATGAGAAGTATCTA+TGG + chr7.4:38390745-38390764 MS.gene055090:CDS 30.0%
!! ATTTTGACAATAAGCTTCCA+TGG - chr7.4:38390811-38390830 None:intergenic 30.0%
!! CAAGAAATCGTTTGGAATTT+TGG + chr7.4:38391321-38391340 MS.gene055090:CDS 30.0%
!! GAACAGATTTTGTTTGTTGA+AGG + chr7.4:38391416-38391435 MS.gene055090:CDS 30.0%
!!! TCTCTCTTTTTTATGTTGCA+TGG + chr7.4:38391514-38391533 MS.gene055090:CDS 30.0%
!!! TCTTTTTTATGATCCTTGCA+GGG - chr7.4:38391698-38391717 None:intergenic 30.0%
!!! TTCTTTTTTATGATCCTTGC+AGG - chr7.4:38391699-38391718 None:intergenic 30.0%
AACAAAGCCATTCTTTGTAG+TGG - chr7.4:38390985-38391004 None:intergenic 35.0%
AGGGATCAAAAATGCATTTG+TGG + chr7.4:38390927-38390946 MS.gene055090:CDS 35.0%
AGTCCAATGTCATCAATTTC+TGG + chr7.4:38391806-38391825 MS.gene055090:CDS 35.0%
ATTGAGTAGCATTTCTTTGC+AGG - chr7.4:38390778-38390797 None:intergenic 35.0%
CGAAAATCCACTACAAAGAA+TGG + chr7.4:38390975-38390994 MS.gene055090:CDS 35.0%
CTTTGTCCACCATAAATGTT+AGG - chr7.4:38390560-38390579 None:intergenic 35.0%
GAAGAAAGAGTCATCAGAAT+TGG + chr7.4:38391872-38391891 MS.gene055090:CDS 35.0%
GAAGAAAGTTCTATATGCTG+AGG + chr7.4:38390584-38390603 MS.gene055090:CDS 35.0%
GTACTATGCAAGTACATTCA+GGG + chr7.4:38390908-38390927 MS.gene055090:CDS 35.0%
TGAGAAATCCTCCAGAAATA+GGG - chr7.4:38391745-38391764 None:intergenic 35.0%
TTAAATCTCCTTCAGAAGCT+TGG + chr7.4:38391071-38391090 MS.gene055090:CDS 35.0%
TTGTCCACCATAAATGTTAG+GGG - chr7.4:38390558-38390577 None:intergenic 35.0%
TTTAGACCCAAGAAATCGTT+TGG + chr7.4:38391313-38391332 MS.gene055090:CDS 35.0%
TTTGTCAGTCCTAATCATCT+TGG + chr7.4:38391041-38391060 MS.gene055090:CDS 35.0%
! AGACCAGAAATTGATGACAT+TGG - chr7.4:38391812-38391831 None:intergenic 35.0%
!! CATTTATGGTGGACAAAGAA+AGG + chr7.4:38390562-38390581 MS.gene055090:CDS 35.0%
!! TTTGGAATTTTGGATAGGAG+AGG + chr7.4:38391331-38391350 MS.gene055090:CDS 35.0%
AAAGTTCTATATGCTGAGGC+AGG + chr7.4:38390588-38390607 MS.gene055090:CDS 40.0%
ACCTAGATTATCTGACGCAT+TGG - chr7.4:38390526-38390545 None:intergenic 40.0%
ACTCAATCCTAGAAACTCCA+TGG + chr7.4:38390791-38390810 MS.gene055090:CDS 40.0%
AGCTTCTTGACATTACCTCT+AGG + chr7.4:38390636-38390655 MS.gene055090:CDS 40.0%
AGGAACCAGATATTACCGAT+TGG + chr7.4:38391644-38391663 MS.gene055090:CDS 40.0%
ATCTCATCAGATTCATCGCA+CGG - chr7.4:38391365-38391384 None:intergenic 40.0%
CGTTAACATCAGCAAGAAAG+AGG + chr7.4:38391127-38391146 MS.gene055090:CDS 40.0%
CTGAGAAATCCTCCAGAAAT+AGG - chr7.4:38391746-38391765 None:intergenic 40.0%
GAGAAATCCTCCAGAAATAG+GGG - chr7.4:38391744-38391763 None:intergenic 40.0%
GCTTCTTGACATTACCTCTA+GGG + chr7.4:38390637-38390656 MS.gene055090:CDS 40.0%
GGAGTGGTAATCATGTTTGA+AGG + chr7.4:38391491-38391510 MS.gene055090:CDS 40.0%
GGTACTATGCAAGTACATTC+AGG + chr7.4:38390907-38390926 MS.gene055090:CDS 40.0%
TAAGCTTCCATGGAGTTTCT+AGG - chr7.4:38390801-38390820 None:intergenic 40.0%
TCATCCTCACAGAGAAAGAA+AGG - chr7.4:38390867-38390886 None:intergenic 40.0%
TCTCACCAATCGGTAATATC+TGG - chr7.4:38391652-38391671 None:intergenic 40.0%
TGTCCACCATAAATGTTAGG+GGG - chr7.4:38390557-38390576 None:intergenic 40.0%
! AAGTTTTCTTACCATTCCGC+TGG + chr7.4:38391466-38391485 MS.gene055090:CDS 40.0%
! AGTTTTCTTACCATTCCGCT+GGG + chr7.4:38391467-38391486 MS.gene055090:CDS 40.0%
! ATTTCTGGAGGATTTCTCAG+AGG + chr7.4:38391746-38391765 MS.gene055090:CDS 40.0%
! ATTTTGGATAGGAGAGGTAG+AGG + chr7.4:38391337-38391356 MS.gene055090:CDS 40.0%
! TTTCTGGAGGATTTCTCAGA+GGG + chr7.4:38391747-38391766 MS.gene055090:CDS 40.0%
!! TATTGACTCCAAGCTTCTGA+AGG - chr7.4:38391082-38391101 None:intergenic 40.0%
AATATGGAAGCCGTGAGGTT+TGG + chr7.4:38390690-38390709 MS.gene055090:CDS 45.0%
AATTGGCGTGAAGGAGGTAA+AGG + chr7.4:38391889-38391908 MS.gene055090:CDS 45.0%
AGACTAAGTGAGCCACAAGT+TGG + chr7.4:38391605-38391624 MS.gene055090:CDS 45.0%
AGTCAAATATGGAAGCCGTG+AGG + chr7.4:38390685-38390704 MS.gene055090:CDS 45.0%
AGTCATCAGAATTGGCGTGA+AGG + chr7.4:38391880-38391899 MS.gene055090:CDS 45.0%
AGTCCCCCTAACATTTATGG+TGG + chr7.4:38390551-38390570 MS.gene055090:CDS 45.0%
AGTCTAGCAATAGTCCCTAG+AGG - chr7.4:38390654-38390673 None:intergenic 45.0%
ATTGGCGTGAAGGAGGTAAA+GGG + chr7.4:38391890-38391909 MS.gene055090:CDS 45.0%
ATTGGTGAGACGAACTCATC+TGG + chr7.4:38391662-38391681 MS.gene055090:CDS 45.0%
CCAAGTCCCCCTAACATTTA+TGG + chr7.4:38390548-38390567 MS.gene055090:CDS 45.0%
CCATAAATGTTAGGGGGACT+TGG - chr7.4:38390551-38390570 None:intergenic 45.0%
CCTCCAGAAATAGGGGATTT+GGG - chr7.4:38391737-38391756 None:intergenic 45.0%
CTTGCCTTTCTTTCTCTGTG+AGG + chr7.4:38390860-38390879 MS.gene055090:CDS 45.0%
GATCCCAAATCCCCTATTTC+TGG + chr7.4:38391731-38391750 MS.gene055090:CDS 45.0%
GATGAGTTCGTCTCACCAAT+CGG - chr7.4:38391662-38391681 None:intergenic 45.0%
GCCAATGCGTCAGATAATCT+AGG + chr7.4:38390522-38390541 MS.gene055090:CDS 45.0%
GTGCGATGAATCTGATGAGA+TGG + chr7.4:38391364-38391383 MS.gene055090:CDS 45.0%
TCAAGATGCATGCCAACTTG+TGG - chr7.4:38391620-38391639 None:intergenic 45.0%
TCCTCCAGAAATAGGGGATT+TGG - chr7.4:38391738-38391757 None:intergenic 45.0%
TGAGTCCTGACAGGTGTTTA+AGG + chr7.4:38391564-38391583 MS.gene055090:CDS 45.0%
TGTGACCTTAAACACCTGTC+AGG - chr7.4:38391572-38391591 None:intergenic 45.0%
TTGGCATGCATCTTGAACTC+AGG + chr7.4:38391624-38391643 MS.gene055090:CDS 45.0%
! CAAAGGAGACTTTGAGAGCA+AGG - chr7.4:38391255-38391274 None:intergenic 45.0%
ATGATTACCACTCCACCCAG+CGG - chr7.4:38391485-38391504 None:intergenic 50.0%
CATCAGAATTGGCGTGAAGG+AGG + chr7.4:38391883-38391902 MS.gene055090:CDS 50.0%
TCAGTCACCATGAACGACGT+TGG - chr7.4:38391773-38391792 None:intergenic 50.0%
TTTCTTACCATTCCGCTGGG+TGG + chr7.4:38391470-38391489 MS.gene055090:CDS 50.0%
! TGACTGAGTTGAGTCCTGAC+AGG + chr7.4:38391555-38391574 MS.gene055090:CDS 50.0%
! TGGCTATTTCATGCCCTGCA+AGG + chr7.4:38391682-38391701 MS.gene055090:CDS 50.0%
!! CCCAAATCCCCTATTTCTGG+AGG + chr7.4:38391734-38391753 MS.gene055090:CDS 50.0%
GCTGATGCTGCCAAACCTCA+CGG - chr7.4:38390703-38390722 None:intergenic 55.0%
CAGAGGGCCAACGTCGTTCA+TGG + chr7.4:38391763-38391782 MS.gene055090:CDS 60.0%
TACCACTCCACCCAGCGGAA+TGG - chr7.4:38391480-38391499 None:intergenic 60.0%
TACCATTCCGCTGGGTGGAG+TGG + chr7.4:38391475-38391494 MS.gene055090:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 38390516 38391919 38390516 ID=MS.gene055090
chr7.4 mRNA 38390516 38391919 38390516 ID=MS.gene055090.t1;Parent=MS.gene055090
chr7.4 exon 38390516 38391919 38390516 ID=MS.gene055090.t1.exon1;Parent=MS.gene055090.t1
chr7.4 CDS 38390516 38391919 38390516 ID=cds.MS.gene055090.t1;Parent=MS.gene055090.t1
Gene Sequence

>MS.gene055090

ATGGCTGCCAATGCGTCAGATAATCTAGGTGTCCAAGTCCCCCTAACATTTATGGTGGACAAAGAAAGGAAGAAAGTTCTATATGCTGAGGCAGGAAAAGATTTTGTTGATGTTCTTTTCAGCTTCTTGACATTACCTCTAGGGACTATTGCTAGACTCGTATCTAAAGAGTCAAATATGGAAGCCGTGAGGTTTGGCAGCATCAGCTCACTGTATCAAAGTGTGTCTGATCTTGATGAGAAGTATCTATGGTCAAATACCTGCAAAGAAATGCTACTCAATCCTAGAAACTCCATGGAAGCTTATTGTCAAAATATGAAATTGAACATTGACGAAACTGAATGCTTGCCTTTCTTTCTCTGTGAGGATGATAATTGCACAAGAGAAAATGGGTACTATGCAAGTACATTCAGGGATCAAAAATGCATTTGTGGCAAGCTATTGAATATTGTGCGTACACGAAAATCCACTACAAAGAATGGCTTTGTTAATGAAAGTTCTACCTTTATAATTTCTGACAATCTTTTTGTCAGTCCTAATCATCTTGGAACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATAACATCGATGATATTGATAAACAAATCGTTAACATCAGCAAGAAAGAGGTATATTTTCTGAGTTTCTATGTTATCTTTTTCTGTTTATTGTTGTGTCTCTCATTAGTTTCTAATCTCTTGTTTCAACAGATCATTGATCTTCTCAAGTTTTCCTTGCTCTCAAAGTCTCCTTTGTCAGACTTTATCTTTGAAAAGGAATATTTTGTTGGTAATTTAGACCCAAGAAATCGTTTGGAATTTTGGATAGGAGAGGTAGAGGAGCCGTGCGATGAATCTGATGAGATGGTTGTGAAAGTAGTGAGAAGAAAATCAAATGAACAGATTTTGTTTGTTGAAGGAGATGAAAATTTCACTGACTTTATTTTAAGTTTTCTTACCATTCCGCTGGGTGGAGTGGTAATCATGTTTGAAGGTCTCTCTTTTTTATGTTGCATGGATAATTTATATAACAGTATGACTGAGTTGAGTCCTGACAGGTGTTTAAGGTCACAATATGTTAAAGACAGACTAAGTGAGCCACAAGTTGGCATGCATCTTGAACTCAGGAACCAGATATTACCGATTGGTGAGACGAACTCATCTGGCTATTTCATGCCCTGCAAGGATCATAAAAAAGAAGTGAAATTTGTTGATCCCAAATCCCCTATTTCTGGAGGATTTCTCAGAGGGCCAACGTCGTTCATGGTGACTGACGACTTAGTTGTGAGTCCAATGTCATCAATTTCTGGTCTTGCGTATTTAGAAAGAATGAAGGTTCCCCTTAATGATGTAGAAGAAAGAGTCATCAGAATTGGCGTGAAGGAGGTAAAGGGAGTGTGA
Protein sequence

>MS.gene055090.t1

MAANASDNLGVQVPLTFMVDKERKKVLYAEAGKDFVDVLFSFLTLPLGTIARLVSKESNMEAVRFGSISSLYQSVSDLDEKYLWSNTCKEMLLNPRNSMEAYCQNMKLNIDETECLPFFLCEDDNCTRENGYYASTFRDQKCICGKLLNIVRTRKSTTKNGFVNESSTFIISDNLFVSPNHLGTSLNLLQKLGVNNIDDIDKQIVNISKKEVYFLSFYVIFFCLLLCLSLVSNLLFQQIIDLLKFSLLSKSPLSDFIFEKEYFVGNLDPRNRLEFWIGEVEEPCDESDEMVVKVVRRKSNEQILFVEGDENFTDFILSFLTIPLGGVVIMFEGLSFLCCMDNLYNSMTELSPDRCLRSQYVKDRLSEPQVGMHLELRNQILPIGETNSSGYFMPCKDHKKEVKFVDPKSPISGGFLRGPTSFMVTDDLVVSPMSSISGLAYLERMKVPLNDVEERVIRIGVKEVKGV