AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene048070

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048070.t1 MTR_4g019340 82.996 494 54 3 11 501 37 503 0.0 810
MS.gene048070.t1 MTR_4g017830 74.954 539 121 5 1 537 1 527 0.0 793
MS.gene048070.t1 MTR_4g017410 66.221 524 142 9 1 520 1 493 0.0 655
MS.gene048070.t1 MTR_4g017440 66.731 517 151 7 4 515 6 506 0.0 651
MS.gene048070.t1 MTR_4g017470 61.524 525 151 7 1 520 1 479 0.0 592
MS.gene048070.t1 MTR_4g017550 65.409 477 140 10 39 511 18 473 0.0 576
MS.gene048070.t1 MTR_4g017550 28.295 258 137 10 6 245 242 469 2.46e-11 66.2
MS.gene048070.t1 MTR_4g017610 59.172 507 172 9 2 507 3 475 0.0 566
MS.gene048070.t1 MTR_4g019310 42.256 523 249 14 1 507 1 486 1.12e-120 364
MS.gene048070.t1 MTR_7g066340 34.328 536 266 14 1 522 1 464 1.87e-81 262
MS.gene048070.t1 MTR_7g066260 33.333 549 284 14 5 538 8 489 4.56e-79 256
MS.gene048070.t1 MTR_7g066570 35.075 536 265 16 5 515 7 484 2.21e-78 257
MS.gene048070.t1 MTR_7g066350 34.113 513 253 13 8 507 5 445 2.76e-76 248
MS.gene048070.t1 MTR_7g066410 34.015 538 280 17 13 511 11 512 4.05e-76 249
MS.gene048070.t1 MTR_7g066430 35.701 521 277 15 13 513 5 487 1.40e-75 248
MS.gene048070.t1 MTR_7g058710 31.250 528 293 11 1 510 1 476 1.19e-73 242
MS.gene048070.t1 MTR_1g041315 33.143 525 247 17 1 495 1 451 1.76e-70 234
MS.gene048070.t1 MTR_7g066400 32.692 520 250 14 1 507 1 433 1.57e-68 228
MS.gene048070.t1 MTR_7g012680 34.457 534 246 18 1 515 1 449 5.22e-68 226
MS.gene048070.t1 MTR_7g066360 33.091 550 278 14 2 538 4 476 4.73e-66 222
MS.gene048070.t1 MTR_7g062280 33.640 544 281 18 1 517 1 491 1.42e-64 218
MS.gene048070.t1 MTR_7g063880 31.478 521 288 17 1 511 1 462 5.16e-61 208
MS.gene048070.t1 MTR_7g063660 31.887 530 274 16 13 517 10 477 1.26e-60 207
MS.gene048070.t1 MTR_7g062300 32.505 523 289 16 1 510 1 472 3.23e-60 206
MS.gene048070.t1 MTR_7g063900 32.210 534 287 16 1 511 1 482 1.95e-59 204
MS.gene048070.t1 MTR_7g066580 31.599 519 248 16 18 509 1 439 9.15e-59 202
MS.gene048070.t1 MTR_7g066310 30.326 521 218 14 13 522 8 394 3.64e-57 196
MS.gene048070.t1 MTR_7g063840 31.226 522 295 16 7 517 5 473 3.65e-57 198
MS.gene048070.t1 MTR_7g066290 35.696 381 202 11 3 365 6 361 5.82e-57 196
MS.gene048070.t1 MTR_7g063890 32.136 529 284 18 6 511 22 498 1.37e-54 192
MS.gene048070.t1 MTR_4g019240 75.806 124 25 4 1 122 1 121 4.37e-52 176
MS.gene048070.t1 MTR_4g019240 81.429 70 13 0 469 538 112 181 5.42e-26 105
MS.gene048070.t1 MTR_7g063920 29.175 521 280 14 1 517 1 436 1.27e-51 182
MS.gene048070.t1 MTR_7g063820 31.285 537 296 15 1 517 1 484 2.23e-50 180
MS.gene048070.t1 MTR_7g063830 32.500 400 221 12 8 390 6 373 8.36e-49 175
MS.gene048070.t1 MTR_7g063670 30.038 526 275 18 6 517 11 457 1.82e-46 169
MS.gene048070.t1 MTR_3g065200 28.600 500 262 16 13 505 4 415 3.51e-43 160
MS.gene048070.t1 MTR_7g066480 33.858 381 214 12 13 382 17 370 5.52e-42 156
MS.gene048070.t1 MTR_3g007740 29.735 528 268 21 1 511 1 442 2.42e-41 154
MS.gene048070.t1 MTR_7g058700 31.233 365 163 12 24 357 531 838 3.04e-40 156
MS.gene048070.t1 MTR_7g066280 28.442 443 256 12 99 522 1 401 8.52e-40 149
MS.gene048070.t1 MTR_2g029400 27.912 498 249 14 8 499 10 403 2.28e-37 143
MS.gene048070.t1 MTR_7g066490 32.303 356 188 9 13 356 17 331 5.93e-37 142
MS.gene048070.t1 MTR_7g066490 49.296 71 36 0 441 511 337 407 5.34e-11 65.1
MS.gene048070.t1 MTR_7g066680 32.188 320 157 7 226 507 37 334 6.81e-28 114
MS.gene048070.t1 MTR_1g014060 32.468 231 122 8 21 241 9 215 3.34e-25 107
MS.gene048070.t1 MTR_1g014060 35.377 212 96 7 304 511 210 384 2.57e-19 90.5
MS.gene048070.t1 MTR_7g063720 31.818 242 123 4 270 507 19 222 2.53e-23 99.4
MS.gene048070.t1 MTR_8g445860 29.688 256 120 7 274 505 13 232 5.31e-23 98.2
MS.gene048070.t1 MTR_8g445860 31.120 241 148 5 10 247 11 236 4.50e-21 92.8
MS.gene048070.t1 MTR_4g019350 53.465 101 32 2 332 432 1 86 6.88e-23 93.2
MS.gene048070.t1 MTR_7g100420 33.103 290 156 9 226 507 134 393 2.94e-22 99.4
MS.gene048070.t1 MTR_1g115440 30.196 255 152 7 1 247 1 237 2.07e-21 94.0
MS.gene048070.t1 MTR_8g023240 23.507 536 307 18 6 513 31 491 3.07e-21 97.8
MS.gene048070.t1 MTR_7g062270 34.634 205 101 7 1 197 1 180 5.65e-21 95.5
MS.gene048070.t1 MTR_0150s0010 32.766 235 143 7 274 505 10 232 1.06e-19 89.0
MS.gene048070.t1 MTR_0150s0010 29.046 241 150 4 13 247 11 236 1.30e-17 82.8
MS.gene048070.t1 MTR_7g063850 26.250 320 188 9 198 510 3 281 1.22e-19 89.7
MS.gene048070.t1 MTR_1g115455 32.609 138 76 2 13 146 10 134 1.52e-13 70.9
MS.gene048070.t1 MTR_1g115455 39.241 79 46 1 274 350 9 87 2.58e-11 64.3
MS.gene048070.t1 MTR_1g115450 41.772 79 44 1 274 350 7 85 9.38e-13 66.2
MS.gene048070.t1 MTR_1g115450 35.043 117 63 1 10 126 5 108 1.57e-12 65.5
MS.gene048070.t1 MTR_7g066390 43.182 88 45 1 425 512 41 123 1.77e-12 65.9
MS.gene048070.t1 MTR_6g006800 63.830 47 16 1 1 47 1 46 2.47e-12 62.8
MS.gene048070.t1 MTR_4g019330 43.478 92 50 2 428 517 97 188 4.38e-11 62.8
MS.gene048070.t1 MTR_0150s0030 33.673 98 56 2 274 368 8 99 4.45e-11 63.2
MS.gene048070.t1 MTR_8g445910 34.694 98 55 2 274 368 8 99 7.06e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene048070.t1 AT5G01120 31.141 517 301 14 9 507 6 485 9.68e-60 206
MS.gene048070.t1 AT3G09140 31.931 523 293 15 9 507 6 489 2.47e-59 205
MS.gene048070.t1 AT3G09140 27.236 246 161 6 270 504 5 243 3.23e-14 75.5
MS.gene048070.t1 AT5G43240 31.845 515 296 14 13 507 10 489 3.99e-56 196
MS.gene048070.t1 AT5G43240 31.845 515 296 14 13 507 10 489 3.99e-56 196
MS.gene048070.t1 AT5G43240 31.845 515 296 14 13 507 10 489 3.99e-56 196
MS.gene048070.t1 AT3G09140 30.309 551 293 16 9 507 6 517 6.92e-54 191
MS.gene048070.t1 AT3G09140 27.014 211 137 5 270 470 5 208 8.67e-12 68.2
MS.gene048070.t1 AT5G01130 30.724 511 277 15 2 508 4 441 2.20e-53 187
MS.gene048070.t1 AT5G01140 31.262 515 274 17 2 507 4 447 7.63e-53 187
MS.gene048070.t1 AT5G01150 30.682 528 288 16 2 507 4 475 3.66e-50 180
MS.gene048070.t1 AT3G09110 33.728 338 188 8 9 335 6 318 1.92e-48 171
MS.gene048070.t1 AT3G09120 34.451 328 190 8 9 328 3 313 2.24e-47 167
MS.gene048070.t1 AT3G09120 27.823 248 139 8 274 505 6 229 1.28e-14 75.5
MS.gene048070.t1 AT5G37320 29.254 523 308 15 7 512 3 480 4.34e-46 169
MS.gene048070.t1 AT5G43240 29.132 357 220 7 164 507 9 345 7.08e-27 112

Find 103 sgRNAs with CRISPR-Local

Find 296 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATTCAGTCTTACGGTTT+AGG 0.237537 4.4:-82092090 None:intergenic
TGGCGGGTTGTCTTTGTTCC+TGG 0.250804 4.4:-82090668 None:intergenic
GGTATTGTTGATGCTTTAAA+TGG 0.270472 4.4:+82088483 MS.gene048070:CDS
GTTAAATTTGAATCGTGTTT+TGG 0.272974 4.4:-82092021 None:intergenic
CATGCAGATGTTGATGGAAT+TGG 0.293472 4.4:+82088584 MS.gene048070:CDS
TTGTACCCGCGACATTAAAA+TGG 0.294043 4.4:+82090723 MS.gene048070:CDS
CTCACCACTACATATTATTA+TGG 0.301079 4.4:+82091030 MS.gene048070:CDS
AATGATTCACATGGATTCTT+CGG 0.308335 4.4:-82088291 None:intergenic
ATTGATTTGTTAGGAGATCT+TGG 0.318054 4.4:-82091198 None:intergenic
AGGGTCCATTGTAAAGGTTT+TGG 0.343635 4.4:+82090846 MS.gene048070:CDS
GAGAGTGTCAACAAAGTCTT+TGG 0.349073 4.4:-82088079 None:intergenic
GTGAAGAGACCGGCATTATA+TGG 0.352416 4.4:+82091240 MS.gene048070:CDS
GAAGATTGTGCCTAGTTCTT+TGG 0.356635 4.4:+82088554 MS.gene048070:CDS
ACTGCTGATGCAAACTGATT+TGG 0.359514 4.4:-82090688 None:intergenic
AGCTTCCTTACAATACCATT+AGG 0.362999 4.4:+82090826 MS.gene048070:CDS
GCTTCCTTACAATACCATTA+GGG 0.366821 4.4:+82090827 MS.gene048070:CDS
ACAGGGTTCCAAACATCATT+TGG 0.367250 4.4:-82088246 None:intergenic
CACACACAACATTGGAAAAC+AGG 0.378988 4.4:+82088638 MS.gene048070:CDS
ACCTCACTCCAAATGATGTT+TGG 0.381037 4.4:+82088238 MS.gene048070:CDS
GTATTGTTGATGCTTTAAAT+GGG 0.381381 4.4:+82088484 MS.gene048070:CDS
ATGATTCACATGGATTCTTC+GGG 0.382947 4.4:-82088290 None:intergenic
AAATTTGGATTCTGAGGGTC+AGG 0.385988 4.4:+82088449 MS.gene048070:CDS
GGAATGTTGAGGGGCTGGTT+TGG 0.395287 4.4:-82090994 None:intergenic
TCTGAGGGTCAGGGAAATAA+TGG 0.398079 4.4:+82088459 MS.gene048070:CDS
ATGCAGATGTTGATGGAATT+GGG 0.399870 4.4:+82088585 MS.gene048070:CDS
TTCTGATTTGAGTCAATTAG+AGG 0.405222 4.4:+82088611 MS.gene048070:CDS
CAGAGGCTCATGAGAGGTTA+AGG 0.420057 4.4:-82090620 None:intergenic
AGGAGTGATTTCTAAGACAA+TGG 0.423140 4.4:+82091137 MS.gene048070:CDS
CAGGATCTTGATTGTACTTG+TGG 0.453905 4.4:+82088402 MS.gene048070:CDS
CGTTGTTGTGTGTGGTTAAG+AGG 0.456967 4.4:-82088140 None:intergenic
ACCATTAGGGTCCATTGTAA+AGG 0.460196 4.4:+82090840 MS.gene048070:CDS
AGGGATTTACGCTATGGTAA+AGG 0.465522 4.4:+82091075 MS.gene048070:CDS
CCTGGTGTCGCACCACAGTT+TGG 0.469731 4.4:+82090967 MS.gene048070:CDS
GGAGTGATTTCTAAGACAAT+GGG 0.472285 4.4:+82091138 MS.gene048070:CDS
AACAATAGAAGTACCAGTAG+TGG 0.475263 4.4:+82091113 MS.gene048070:CDS
ACCTTTACAATGGACCCTAA+TGG 0.477568 4.4:-82090841 None:intergenic
AACAACATTTGTTTGCAGAC+AGG 0.485916 4.4:-82088264 None:intergenic
CATGAGGAATGTTGAGGGGC+TGG 0.489637 4.4:-82090999 None:intergenic
CTTGGACTCTTTGTGGTGTA+CGG 0.490020 4.4:+82090921 MS.gene048070:CDS
TAGAGAACTTGGACTCTTTG+TGG 0.493299 4.4:+82090914 MS.gene048070:CDS
GACTTCCATGCAGATGTTGA+TGG 0.493543 4.4:+82088578 MS.gene048070:CDS
ACAACATTTGTTTGCAGACA+GGG 0.497506 4.4:-82088263 None:intergenic
GAAATCACTCCTCCCACTAC+TGG 0.501709 4.4:-82091126 None:intergenic
GGGATTTACGCTATGGTAAA+GGG 0.502536 4.4:+82091076 MS.gene048070:CDS
CCAAACTGTGGTGCGACACC+AGG 0.503303 4.4:-82090967 None:intergenic
TCTTGGATCCATTGCAGTCA+AGG 0.503976 4.4:-82091181 None:intergenic
CGCTCCGTGTTACTCAATCC+TGG 0.504813 4.4:+82090949 MS.gene048070:CDS
ATGCAAGAATTAGCAGAAAG+TGG 0.505717 4.4:-82091288 None:intergenic
GTACAAGAGTGTAGAGAACT+TGG 0.512946 4.4:+82090903 MS.gene048070:CDS
GCTGATGCAAACTGATTTGG+CGG 0.519432 4.4:-82090685 None:intergenic
TTCAAAATTGTATTTGTCAG+AGG 0.520812 4.4:-82090637 None:intergenic
ACTACATATTATTATGGTAC+AGG 0.521118 4.4:+82091036 MS.gene048070:CDS
TGCAAAAGCCTTGACTGCAA+TGG 0.525800 4.4:+82091173 MS.gene048070:CDS
TGGACCCTAATGGTATTGTA+AGG 0.526033 4.4:-82090831 None:intergenic
TAGTAGCAAGTGGAAGAGAA+AGG 0.530533 4.4:-82088110 None:intergenic
ATGGAAGTCACCAAAGAACT+AGG 0.531897 4.4:-82088564 None:intergenic
CCTTGTTGATCTTGAAGTGA+AGG 0.535507 4.4:+82091338 MS.gene048070:CDS
CAAGAGAGGGATTTACGCTA+TGG 0.538492 4.4:+82091069 MS.gene048070:CDS
GATAAGCATTGGTGAGGCTG+AGG 0.538769 4.4:+82091362 MS.gene048070:CDS
TCAAAATTTACACTGACTAG+TGG 0.539589 4.4:+82091976 MS.gene048070:CDS
GATCCTTTGCAAGTTCATCA+AGG 0.539721 4.4:-82092068 None:intergenic
TGAACATTGATGACACTGAA+TGG 0.541744 4.4:+82088331 MS.gene048070:CDS
TATTGTTGATGCTTTAAATG+GGG 0.560398 4.4:+82088485 MS.gene048070:CDS
ACAATAGAAGTACCAGTAGT+GGG 0.572712 4.4:+82091114 MS.gene048070:CDS
TCCAAACATCATTTGGAGTG+AGG 0.574002 4.4:-82088239 None:intergenic
GAGGAAGTCACACACAACAT+TGG 0.582955 4.4:+82088630 MS.gene048070:CDS
ACCATCCAAAACCTTTACAA+TGG 0.583435 4.4:-82090851 None:intergenic
TATCCTTGATGAACTTGCAA+AGG 0.583888 4.4:+82092065 MS.gene048070:CDS
TTGTACATGAGGAATGTTGA+GGG 0.587586 4.4:-82091004 None:intergenic
TTGATCATCGTTGTTGTGTG+TGG 0.590152 4.4:-82088148 None:intergenic
CTTCAAGATCAACAAGGGGA+AGG 0.591214 4.4:-82091332 None:intergenic
TCAGAATCATCATCATTCCT+CGG 0.597491 4.4:+82088183 MS.gene048070:CDS
TCTCCTACACCATATAATGC+CGG 0.606100 4.4:-82091249 None:intergenic
CCTTCACTTCAAGATCAACA+AGG 0.610416 4.4:-82091338 None:intergenic
CTGATGCAAACTGATTTGGC+GGG 0.610508 4.4:-82090684 None:intergenic
CAATTCCATCAACATCTGCA+TGG 0.613002 4.4:-82088583 None:intergenic
AGGTTAAGGTGTACTTGAGG+AGG 0.616375 4.4:-82090606 None:intergenic
TTCTTGCATAATGATTCACA+TGG 0.617558 4.4:-82088300 None:intergenic
AGGCGAATGATAGTAGCAAG+TGG 0.618314 4.4:-82088120 None:intergenic
CAGGAACATCAAAGCAAGAG+AGG 0.629221 4.4:+82091055 MS.gene048070:CDS
GTGGTGAGTGTTTGTACATG+AGG 0.631505 4.4:-82091015 None:intergenic
AATTTGGATTCTGAGGGTCA+GGG 0.635203 4.4:+82088450 MS.gene048070:CDS
TGTACCATAATAATATGTAG+TGG 0.647988 4.4:-82091034 None:intergenic
TTGATGTCAAGGAAGCTGCA+AGG 0.648287 4.4:-82091957 None:intergenic
GGTGGGATTTGTGAAGAGAC+CGG 0.651602 4.4:+82091230 MS.gene048070:CDS
AGACCGGCATTATATGGTGT+AGG 0.653054 4.4:+82091246 MS.gene048070:CDS
CTTCACTTCAAGATCAACAA+GGG 0.654366 4.4:-82091337 None:intergenic
GAAGTGAAGGTGATAAGCAT+TGG 0.654807 4.4:+82091351 MS.gene048070:CDS
TGCAGATGTTGATGGAATTG+GGG 0.656452 4.4:+82088586 MS.gene048070:CDS
AGGAACATCAAAGCAAGAGA+GGG 0.661463 4.4:+82091056 MS.gene048070:CDS
GAGAGGTTAAGGTGTACTTG+AGG 0.667782 4.4:-82090609 None:intergenic
ATTTGTCAGAGGCTCATGAG+AGG 0.675408 4.4:-82090626 None:intergenic
TTCACTTCAAGATCAACAAG+GGG 0.676098 4.4:-82091336 None:intergenic
GAGGGTCAGGGAAATAATGG+TGG 0.682469 4.4:+82088462 MS.gene048070:CDS
ACACAACATTGGAAAACAGG+AGG 0.691626 4.4:+82088641 MS.gene048070:CDS
TGTACATGAGGAATGTTGAG+GGG 0.709478 4.4:-82091003 None:intergenic
TTTGTACATGAGGAATGTTG+AGG 0.712351 4.4:-82091005 None:intergenic
GAAGGTGATAAGCATTGGTG+AGG 0.714369 4.4:+82091356 MS.gene048070:CDS
ATAGAAGTACCAGTAGTGGG+AGG 0.716192 4.4:+82091117 MS.gene048070:CDS
ATGTCAAGGAAGCTGCAAGG+AGG 0.721178 4.4:-82091954 None:intergenic
GAGTGATTTCTAAGACAATG+GGG 0.726830 4.4:+82091139 MS.gene048070:CDS
TGGTTTGGACAACCAAACTG+TGG 0.732553 4.4:-82090979 None:intergenic
GACACCAGGATTGAGTAACA+CGG 0.757821 4.4:-82090953 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTAAAAAAAATGTTATATTG+GGG + chr4.4:82090519-82090538 MS.gene048070:intron 10.0%
!! TAACAAATCAATTAAAAATG+TGG + chr4.4:82091209-82091228 MS.gene048070:CDS 15.0%
!!! AAAAGAATCAATAAAAGTAT+TGG - chr4.4:82091547-82091566 None:intergenic 15.0%
!!! ACATTTTTAATTGATTTGTT+AGG - chr4.4:82091210-82091229 None:intergenic 15.0%
!!! GAAATATTATGTTTTGATAT+AGG + chr4.4:82091715-82091734 MS.gene048070:intron 15.0%
!!! TAATTTGAGTTAAGAATTAA+AGG + chr4.4:82090318-82090337 MS.gene048070:intron 15.0%
!!! TTAGTTTAGTGTTAATTTTT+TGG + chr4.4:82089334-82089353 MS.gene048070:intron 15.0%
!!! TTTATAACTTGATGTTTTTT+AGG + chr4.4:82089718-82089737 MS.gene048070:intron 15.0%
!! AAATCAATTAAAAATGTGGT+GGG + chr4.4:82091213-82091232 MS.gene048070:CDS 20.0%
!! ATACAAGATATTAAACCAAA+CGG - chr4.4:82090465-82090484 None:intergenic 20.0%
!! TAATAGACAACCTAAAAATT+TGG + chr4.4:82088434-82088453 MS.gene048070:CDS 20.0%
!! TCAAAATAACTACTGAATAA+TGG + chr4.4:82089550-82089569 MS.gene048070:intron 20.0%
!! TTGATATTGTAGTAAAATGA+GGG + chr4.4:82089138-82089157 MS.gene048070:intron 20.0%
!!! ATAAAAGTATTGGATACTTA+TGG - chr4.4:82091537-82091556 None:intergenic 20.0%
!!! ATTATGTTTTGATATAGGTT+GGG + chr4.4:82091720-82091739 MS.gene048070:intron 20.0%
!!! TAAAAGTATTGGATACTTAT+GGG - chr4.4:82091536-82091555 None:intergenic 20.0%
!!! TATTATGTTTTGATATAGGT+TGG + chr4.4:82091719-82091738 MS.gene048070:intron 20.0%
! AAAGAATAGACAAGAAAGTA+AGG + chr4.4:82089811-82089830 MS.gene048070:intron 25.0%
! AACATCAAGTTATAAAGTGA+AGG - chr4.4:82089714-82089733 None:intergenic 25.0%
! AACATGTTATGAAACAAACA+CGG - chr4.4:82088837-82088856 None:intergenic 25.0%
! AATTCAATACCTCAAATTAC+AGG - chr4.4:82089627-82089646 None:intergenic 25.0%
! ACTACATATTATTATGGTAC+AGG + chr4.4:82091036-82091055 MS.gene048070:CDS 25.0%
! ATAGAAAGTGATAAAACTCT+AGG - chr4.4:82089964-82089983 None:intergenic 25.0%
! ATAGAGAAACAGAATATAGT+AGG + chr4.4:82089874-82089893 MS.gene048070:intron 25.0%
! CAAATCAATTAAAAATGTGG+TGG + chr4.4:82091212-82091231 MS.gene048070:CDS 25.0%
! CTTGATATTGTAGTAAAATG+AGG + chr4.4:82089137-82089156 MS.gene048070:intron 25.0%
! TATGTTATCTTGGCTAAAAT+TGG + chr4.4:82090551-82090570 MS.gene048070:intron 25.0%
! TGCAAAGCTAAGTAAAAATT+GGG + chr4.4:82089912-82089931 MS.gene048070:intron 25.0%
! TGGAACAACAAATAAACAAA+AGG - chr4.4:82091426-82091445 None:intergenic 25.0%
! TGGTGTACCATAAATTAAAA+GGG + chr4.4:82090027-82090046 MS.gene048070:intron 25.0%
! TGTACCATAATAATATGTAG+TGG - chr4.4:82091037-82091056 None:intergenic 25.0%
! TTCAAAATTGTATTTGTCAG+AGG - chr4.4:82090640-82090659 None:intergenic 25.0%
! TTCTAATGCTATACATATCA+TGG + chr4.4:82091836-82091855 MS.gene048070:intron 25.0%
! TTGCAAAGCTAAGTAAAAAT+TGG + chr4.4:82089911-82089930 MS.gene048070:intron 25.0%
!! CTCATTTTACTACAATATCA+AGG - chr4.4:82089139-82089158 None:intergenic 25.0%
!! CTGCAATATAAACGTTTTAT+AGG - chr4.4:82089214-82089233 None:intergenic 25.0%
!! GTATTGTTGATGCTTTAAAT+GGG + chr4.4:82088484-82088503 MS.gene048070:CDS 25.0%
!! GTTAAATTTGAATCGTGTTT+TGG - chr4.4:82092024-82092043 None:intergenic 25.0%
!! TAACAAGTTTACAACTTTTC+AGG + chr4.4:82088383-82088402 MS.gene048070:CDS 25.0%
!! TATTGTTGATGCTTTAAATG+GGG + chr4.4:82088485-82088504 MS.gene048070:CDS 25.0%
!! TTTAAATGGGGTTTTTGTTA+AGG + chr4.4:82088497-82088516 MS.gene048070:CDS 25.0%
!!! AAAGGTGTTGAAATAGTTAA+AGG + chr4.4:82090336-82090355 MS.gene048070:intron 25.0%
!!! ATAACTTGATGTTTTTTAGG+TGG + chr4.4:82089721-82089740 MS.gene048070:intron 25.0%
!!! ATGTTTGCCCTTTTAATTTA+TGG - chr4.4:82090037-82090056 None:intergenic 25.0%
!!! ATTTTTAGGTTGTCTATTAG+TGG - chr4.4:82088433-82088452 None:intergenic 25.0%
!!! TGTAATTTGAGGTATTGAAT+TGG + chr4.4:82089626-82089645 MS.gene048070:intron 25.0%
!!! TTTACTTTTTGAACTTGCAT+TGG + chr4.4:82089661-82089680 MS.gene048070:intron 25.0%
!!! TTTTTAGGTTGTCTATTAGT+GGG - chr4.4:82088432-82088451 None:intergenic 25.0%
!!! TTTTTTAGGTGGTTTGTATT+TGG + chr4.4:82089732-82089751 MS.gene048070:intron 25.0%
AAACATTCACAATGCTATGA+TGG + chr4.4:82090065-82090084 MS.gene048070:intron 30.0%
AATAGACAAGAAAGTAAGGA+GGG + chr4.4:82089815-82089834 MS.gene048070:intron 30.0%
AATGATTCACATGGATTCTT+CGG - chr4.4:82088294-82088313 None:intergenic 30.0%
ACCTAAAAATTTGGATTCTG+AGG + chr4.4:82088443-82088462 MS.gene048070:CDS 30.0%
ACGCCTTCAATAAAAAATGT+CGG - chr4.4:82088720-82088739 None:intergenic 30.0%
AGAAACAGAATATAGTAGGA+GGG + chr4.4:82089878-82089897 MS.gene048070:intron 30.0%
AGAATGCATTGTTATATGCA+GGG - chr4.4:82089431-82089450 None:intergenic 30.0%
CCTAAAAATTTGGATTCTGA+GGG + chr4.4:82088444-82088463 MS.gene048070:CDS 30.0%
CTCACCACTACATATTATTA+TGG + chr4.4:82091030-82091049 MS.gene048070:CDS 30.0%
CTGGTGTACCATAAATTAAA+AGG + chr4.4:82090026-82090045 MS.gene048070:intron 30.0%
GCATCTGTTAAAAACTTGAT+AGG + chr4.4:82089759-82089778 MS.gene048070:intron 30.0%
GTCAATTGTGTATGTTATCT+TGG + chr4.4:82090541-82090560 MS.gene048070:intron 30.0%
TAACAATGTCCTGTAATTTG+AGG + chr4.4:82089615-82089634 MS.gene048070:intron 30.0%
TAGTAAAATGAGGGTAATTG+TGG + chr4.4:82089147-82089166 MS.gene048070:intron 30.0%
TATCGAAAATGTAGTGTATC+TGG - chr4.4:82091642-82091661 None:intergenic 30.0%
TCATATCATACTATGTATCC+AGG + chr4.4:82091894-82091913 MS.gene048070:intron 30.0%
TGAATCATTGTTCCAAAATG+TGG + chr4.4:82089089-82089108 MS.gene048070:intron 30.0%
TGTTGAAATAGTTAAAGGTC+CGG + chr4.4:82090341-82090360 MS.gene048070:intron 30.0%
TTCATCATCTGTACATCAAA+AGG - chr4.4:82090586-82090605 None:intergenic 30.0%
TTCTTGCATAATGATTCACA+TGG - chr4.4:82088303-82088322 None:intergenic 30.0%
TTTGTTACGATGAGCATTAT+TGG - chr4.4:82090174-82090193 None:intergenic 30.0%
! AGTAAAAATTGGGAGAGTTT+TGG + chr4.4:82089922-82089941 MS.gene048070:intron 30.0%
! CTGTCTATTAAGATTTTCAG+TGG - chr4.4:82088027-82088046 None:intergenic 30.0%
! GGTATTGTTGATGCTTTAAA+TGG + chr4.4:82088483-82088502 MS.gene048070:CDS 30.0%
! GTAAAAATTGGGAGAGTTTT+GGG + chr4.4:82089923-82089942 MS.gene048070:intron 30.0%
! TAAAAATTGGGAGAGTTTTG+GGG + chr4.4:82089924-82089943 MS.gene048070:intron 30.0%
! TAGTTGGTGTACTTAAATCA+TGG + chr4.4:82090101-82090120 MS.gene048070:intron 30.0%
! TTCTGATTTGAGTCAATTAG+AGG + chr4.4:82088611-82088630 MS.gene048070:CDS 30.0%
!! ACTACTGAATAATGGTTTTG+AGG + chr4.4:82089558-82089577 MS.gene048070:intron 30.0%
!! ATTGATTTGTTAGGAGATCT+TGG - chr4.4:82091201-82091220 None:intergenic 30.0%
!! TAACATCCATTTTAATGTCG+CGG - chr4.4:82090732-82090751 None:intergenic 30.0%
AAATCAAGAGGTAAGAATCC+TGG - chr4.4:82091915-82091934 None:intergenic 35.0%
AAATTAGTAGGTCCTTGAAC+TGG + chr4.4:82088998-82089017 MS.gene048070:intron 35.0%
AACAACATTTGTTTGCAGAC+AGG - chr4.4:82088267-82088286 None:intergenic 35.0%
AATGTAGTGTATCTGGAAGA+CGG - chr4.4:82091635-82091654 None:intergenic 35.0%
ACAACATTTGTTTGCAGACA+GGG - chr4.4:82088266-82088285 None:intergenic 35.0%
ACACTGTTATTGTTACCGTT+TGG + chr4.4:82090447-82090466 MS.gene048070:intron 35.0%
ACCATCCAAAACCTTTACAA+TGG - chr4.4:82090854-82090873 None:intergenic 35.0%
AGAACTATGTTGTGAATCGT+CGG + chr4.4:82089262-82089281 MS.gene048070:intron 35.0%
AGCTTCCTTACAATACCATT+AGG + chr4.4:82090826-82090845 MS.gene048070:CDS 35.0%
AGTTCAAGGACCTACTAATT+TGG - chr4.4:82088999-82089018 None:intergenic 35.0%
ATCACTAGCCCACAAATATT+GGG - chr4.4:82088923-82088942 None:intergenic 35.0%
ATCTGTACATCAAAAGGACA+GGG - chr4.4:82090580-82090599 None:intergenic 35.0%
ATGATTCACATGGATTCTTC+GGG - chr4.4:82088293-82088312 None:intergenic 35.0%
ATGCAAGAATTAGCAGAAAG+TGG - chr4.4:82091291-82091310 None:intergenic 35.0%
ATGGTACACCAGAAAACTTT+GGG - chr4.4:82090018-82090037 None:intergenic 35.0%
ATTGTTCCAAAATGTGGTCA+TGG + chr4.4:82089095-82089114 MS.gene048070:intron 35.0%
CAAGGTGAATTCTAGTCATT+AGG - chr4.4:82089368-82089387 None:intergenic 35.0%
CTTCACTTCAAGATCAACAA+GGG - chr4.4:82091340-82091359 None:intergenic 35.0%
GAATAGACAAGAAAGTAAGG+AGG + chr4.4:82089814-82089833 MS.gene048070:intron 35.0%
GAATGCATTGTTATATGCAG+GGG - chr4.4:82089430-82089449 None:intergenic 35.0%
GAGAAACAGAATATAGTAGG+AGG + chr4.4:82089877-82089896 MS.gene048070:intron 35.0%
GAGAATGCATTGTTATATGC+AGG - chr4.4:82089432-82089451 None:intergenic 35.0%
GATACTTATGGGTAGGTATT+AGG - chr4.4:82091525-82091544 None:intergenic 35.0%
GATCAAAGAGGCTAAAAACT+TGG - chr4.4:82091446-82091465 None:intergenic 35.0%
GCATTATTGGAATGGATATC+TGG - chr4.4:82090161-82090180 None:intergenic 35.0%
GCTATGATGGTTTACTTAGT+GGG + chr4.4:82090078-82090097 MS.gene048070:intron 35.0%
GCTTCCTTACAATACCATTA+GGG + chr4.4:82090827-82090846 MS.gene048070:CDS 35.0%
GTATCAAAATGCTACTCGAA+CGG + chr4.4:82089516-82089535 MS.gene048070:intron 35.0%
GTTCAAGGACCTACTAATTT+GGG - chr4.4:82088998-82089017 None:intergenic 35.0%
GTTGAAATAGTTAAAGGTCC+GGG + chr4.4:82090342-82090361 MS.gene048070:intron 35.0%
TACGATGAGCATTATTGGAA+TGG - chr4.4:82090169-82090188 None:intergenic 35.0%
TATCCTTGATGAACTTGCAA+AGG + chr4.4:82092065-82092084 MS.gene048070:CDS 35.0%
TATGGTACACCAGAAAACTT+TGG - chr4.4:82090019-82090038 None:intergenic 35.0%
TCAGAATCATCATCATTCCT+CGG + chr4.4:82088183-82088202 MS.gene048070:CDS 35.0%
TGACTAGAATTCACCTTGTA+AGG + chr4.4:82089370-82089389 MS.gene048070:intron 35.0%
TGCTATGATGGTTTACTTAG+TGG + chr4.4:82090077-82090096 MS.gene048070:intron 35.0%
TTCACTTCAAGATCAACAAG+GGG - chr4.4:82091339-82091358 None:intergenic 35.0%
TTCTCACATAGACCTTCTTA+AGG - chr4.4:82089793-82089812 None:intergenic 35.0%
TTGAAATAGTTAAAGGTCCG+GGG + chr4.4:82090343-82090362 MS.gene048070:intron 35.0%
TTGTACATGAGGAATGTTGA+GGG - chr4.4:82091007-82091026 None:intergenic 35.0%
TTTGATCCTATTGATCCTGA+GGG + chr4.4:82089987-82090006 MS.gene048070:intron 35.0%
TTTGTACATGAGGAATGTTG+AGG - chr4.4:82091008-82091027 None:intergenic 35.0%
! AAGAGACACGATTGTGTTTT+CGG + chr4.4:82091676-82091695 MS.gene048070:intron 35.0%
! AGTATTGGATACTTATGGGT+AGG - chr4.4:82091532-82091551 None:intergenic 35.0%
! AGTATTTTTCTCCTTCACCA+GGG - chr4.4:82090375-82090394 None:intergenic 35.0%
! ATGCAGATGTTGATGGAATT+GGG + chr4.4:82088585-82088604 MS.gene048070:CDS 35.0%
! CCCTCAGAATCCAAATTTTT+AGG - chr4.4:82088447-82088466 None:intergenic 35.0%
! GAAGTCAACAAAGTTTTCAC+TGG - chr4.4:82090800-82090819 None:intergenic 35.0%
! GGGTTTTTGTTAAGGACAAT+GGG + chr4.4:82088505-82088524 MS.gene048070:CDS 35.0%
! TAGTATTTTTCTCCTTCACC+AGG - chr4.4:82090376-82090395 None:intergenic 35.0%
! TGAACATTGATGACACTGAA+TGG + chr4.4:82088331-82088350 MS.gene048070:CDS 35.0%
! TTGGATGGTAACTCTTTTGT+TGG + chr4.4:82090865-82090884 MS.gene048070:CDS 35.0%
!! AAACTTTATCAGCGTTGATG+TGG + chr4.4:82088800-82088819 MS.gene048070:intron 35.0%
!! AACAATAGAAGTACCAGTAG+TGG + chr4.4:82091113-82091132 MS.gene048070:CDS 35.0%
!! AACATCCATTTTAATGTCGC+GGG - chr4.4:82090731-82090750 None:intergenic 35.0%
!! ACAATAGAAGTACCAGTAGT+GGG + chr4.4:82091114-82091133 MS.gene048070:CDS 35.0%
!! AGGAGTGATTTCTAAGACAA+TGG + chr4.4:82091137-82091156 MS.gene048070:CDS 35.0%
!! ATCGTTTTTGACTCTTCTTG+TGG - chr4.4:82088003-82088022 None:intergenic 35.0%
!! GAGTGATTTCTAAGACAATG+GGG + chr4.4:82091139-82091158 MS.gene048070:CDS 35.0%
!! GGAGTGATTTCTAAGACAAT+GGG + chr4.4:82091138-82091157 MS.gene048070:CDS 35.0%
!!! ATGTTTTGATATAGGTTGGG+TGG + chr4.4:82091723-82091742 MS.gene048070:intron 35.0%
!!! GCACCGACATTTTTTATTGA+AGG + chr4.4:82088714-82088733 MS.gene048070:intron 35.0%
!!! TCCATTGTAAAGGTTTTGGA+TGG + chr4.4:82090850-82090869 MS.gene048070:CDS 35.0%
!!! TGTTTTGATATAGGTTGGGT+GGG + chr4.4:82091724-82091743 MS.gene048070:intron 35.0%
AAAACTCGGTATCCAGTTCA+AGG - chr4.4:82089013-82089032 None:intergenic 40.0%
AAGTAAGGAGGGAAATAGAG+CGG + chr4.4:82089826-82089845 MS.gene048070:intron 40.0%
ACACAACATTGGAAAACAGG+AGG + chr4.4:82088641-82088660 MS.gene048070:CDS 40.0%
ACAGGGTTCCAAACATCATT+TGG - chr4.4:82088249-82088268 None:intergenic 40.0%
ACCATTAGGGTCCATTGTAA+AGG + chr4.4:82090840-82090859 MS.gene048070:CDS 40.0%
ACCTCACTCCAAATGATGTT+TGG + chr4.4:82088238-82088257 MS.gene048070:CDS 40.0%
ACCTTTACAATGGACCCTAA+TGG - chr4.4:82090844-82090863 None:intergenic 40.0%
ACTGCTGATGCAAACTGATT+TGG - chr4.4:82090691-82090710 None:intergenic 40.0%
ACTTATGGGTAGGTATTAGG+AGG - chr4.4:82091522-82091541 None:intergenic 40.0%
AGGAACATCAAAGCAAGAGA+GGG + chr4.4:82091056-82091075 MS.gene048070:CDS 40.0%
AGGGATTTACGCTATGGTAA+AGG + chr4.4:82091075-82091094 MS.gene048070:CDS 40.0%
ATGGAAGTCACCAAAGAACT+AGG - chr4.4:82088567-82088586 None:intergenic 40.0%
CAATTCCATCAACATCTGCA+TGG - chr4.4:82088586-82088605 None:intergenic 40.0%
CACACACAACATTGGAAAAC+AGG + chr4.4:82088638-82088657 MS.gene048070:CDS 40.0%
CAGGATCTTGATTGTACTTG+TGG + chr4.4:82088402-82088421 MS.gene048070:CDS 40.0%
CATCACTAGCCCACAAATAT+TGG - chr4.4:82088924-82088943 None:intergenic 40.0%
CATCTGTACATCAAAAGGAC+AGG - chr4.4:82090581-82090600 None:intergenic 40.0%
CATTGGAAAACAGGAGGTAA+TGG + chr4.4:82088647-82088666 MS.gene048070:intron 40.0%
CCTGCAAATTGCAAATCAAG+AGG - chr4.4:82091927-82091946 None:intergenic 40.0%
CCTTCACTTCAAGATCAACA+AGG - chr4.4:82091341-82091360 None:intergenic 40.0%
CCTTGTAAGGTGAATAAGTG+CGG + chr4.4:82089383-82089402 MS.gene048070:intron 40.0%
CCTTGTTGATCTTGAAGTGA+AGG + chr4.4:82091338-82091357 MS.gene048070:CDS 40.0%
CTCAGGATCAATAGGATCAA+AGG - chr4.4:82089988-82090007 None:intergenic 40.0%
CTTATGGGTAGGTATTAGGA+GGG - chr4.4:82091521-82091540 None:intergenic 40.0%
CTTTGATCCTATTGATCCTG+AGG + chr4.4:82089986-82090005 MS.gene048070:intron 40.0%
GAAGTGAAGGTGATAAGCAT+TGG + chr4.4:82091351-82091370 MS.gene048070:CDS 40.0%
GATCCTTTGCAAGTTCATCA+AGG - chr4.4:82092071-82092090 None:intergenic 40.0%
GGGATTTACGCTATGGTAAA+GGG + chr4.4:82091076-82091095 MS.gene048070:CDS 40.0%
TAGAGAACTTGGACTCTTTG+TGG + chr4.4:82090914-82090933 MS.gene048070:CDS 40.0%
TAGTAGCAAGTGGAAGAGAA+AGG - chr4.4:82088113-82088132 None:intergenic 40.0%
TCTCCTACACCATATAATGC+CGG - chr4.4:82091252-82091271 None:intergenic 40.0%
TGGACCCTAATGGTATTGTA+AGG - chr4.4:82090834-82090853 None:intergenic 40.0%
TGTACATGAGGAATGTTGAG+GGG - chr4.4:82091006-82091025 None:intergenic 40.0%
TTCGAATGTGAAACCTTGAG+AGG - chr4.4:82088890-82088909 None:intergenic 40.0%
TTGATCATCGTTGTTGTGTG+TGG - chr4.4:82088151-82088170 None:intergenic 40.0%
TTGTACCCGCGACATTAAAA+TGG + chr4.4:82090723-82090742 MS.gene048070:CDS 40.0%
! AAATTTGGATTCTGAGGGTC+AGG + chr4.4:82088449-82088468 MS.gene048070:CDS 40.0%
! AACAGTGTGTGTGTGTGTTT+TGG - chr4.4:82090435-82090454 None:intergenic 40.0%
! AATTTGGATTCTGAGGGTCA+GGG + chr4.4:82088450-82088469 MS.gene048070:CDS 40.0%
! AGAGACACGATTGTGTTTTC+GGG + chr4.4:82091677-82091696 MS.gene048070:intron 40.0%
! AGGGTCCATTGTAAAGGTTT+TGG + chr4.4:82090846-82090865 MS.gene048070:CDS 40.0%
! CATAAGTGTCGCATAAGTGA+CGG - chr4.4:82088753-82088772 None:intergenic 40.0%
! CATGCAGATGTTGATGGAAT+TGG + chr4.4:82088584-82088603 MS.gene048070:CDS 40.0%
! GAAGATTGTGCCTAGTTCTT+TGG + chr4.4:82088554-82088573 MS.gene048070:CDS 40.0%
! GGGGTTTTTGTTAAGGACAA+TGG + chr4.4:82088504-82088523 MS.gene048070:CDS 40.0%
! GTACAAGAGTGTAGAGAACT+TGG + chr4.4:82090903-82090922 MS.gene048070:CDS 40.0%
! TCCAAACATCATTTGGAGTG+AGG - chr4.4:82088242-82088261 None:intergenic 40.0%
! TGCAGATGTTGATGGAATTG+GGG + chr4.4:82088586-82088605 MS.gene048070:CDS 40.0%
! TGGTTTACTTAGTGGGTAGT+TGG + chr4.4:82090085-82090104 MS.gene048070:intron 40.0%
!! CAATTTTGAAAAGCAGCTCC+AGG + chr4.4:82090650-82090669 MS.gene048070:CDS 40.0%
!! CATTTGGAGTGAGGTTTTGT+AGG - chr4.4:82088233-82088252 None:intergenic 40.0%
!! CCTCTTGATTTGCAATTTGC+AGG + chr4.4:82091924-82091943 MS.gene048070:intron 40.0%
!! GAGAGTGTCAACAAAGTCTT+TGG - chr4.4:82088082-82088101 None:intergenic 40.0%
!! GGACAATGGGTCGTTATTTT+TGG + chr4.4:82088518-82088537 MS.gene048070:CDS 40.0%
!! GGTTTTGTAGGCTTTCATAG+AGG - chr4.4:82088221-82088240 None:intergenic 40.0%
!! GTTTTGATATAGGTTGGGTG+GGG + chr4.4:82091725-82091744 MS.gene048070:intron 40.0%
!! TAGGAGAGCATTCCTTAAGA+AGG + chr4.4:82089778-82089797 MS.gene048070:intron 40.0%
!! TGTGTGTGTGTGTTTTGGAT+AGG - chr4.4:82090430-82090449 None:intergenic 40.0%
AGACCGGCATTATATGGTGT+AGG + chr4.4:82091246-82091265 MS.gene048070:CDS 45.0%
AGCCCACAAATATTGGGACA+GGG - chr4.4:82088917-82088936 None:intergenic 45.0%
AGGCGAATGATAGTAGCAAG+TGG - chr4.4:82088123-82088142 None:intergenic 45.0%
AGGTGAATAAGTGCGGTGTT+TGG + chr4.4:82089390-82089409 MS.gene048070:intron 45.0%
AGGTTAAGGTGTACTTGAGG+AGG - chr4.4:82090609-82090628 None:intergenic 45.0%
ATACCTGTCAAACACCACAC+GGG - chr4.4:82091475-82091494 None:intergenic 45.0%
ATTGTTATATGCAGGGGCCA+GGG - chr4.4:82089424-82089443 None:intergenic 45.0%
ATTTGTCAGAGGCTCATGAG+AGG - chr4.4:82090629-82090648 None:intergenic 45.0%
CAAGAGAGGGATTTACGCTA+TGG + chr4.4:82091069-82091088 MS.gene048070:CDS 45.0%
CAGGAACATCAAAGCAAGAG+AGG + chr4.4:82091055-82091074 MS.gene048070:CDS 45.0%
CATACCTGTCAAACACCACA+CGG - chr4.4:82091476-82091495 None:intergenic 45.0%
CCGCACTTATTCACCTTACA+AGG - chr4.4:82089386-82089405 None:intergenic 45.0%
CGTTGTTGTGTGTGGTTAAG+AGG - chr4.4:82088143-82088162 None:intergenic 45.0%
CTCCCTGTCCCAATATTTGT+GGG + chr4.4:82088912-82088931 MS.gene048070:intron 45.0%
CTTCAAGATCAACAAGGGGA+AGG - chr4.4:82091335-82091354 None:intergenic 45.0%
CTTGGACTCTTTGTGGTGTA+CGG + chr4.4:82090921-82090940 MS.gene048070:CDS 45.0%
GACACCAGGATTGAGTAACA+CGG - chr4.4:82090956-82090975 None:intergenic 45.0%
GACTTCCATGCAGATGTTGA+TGG + chr4.4:82088578-82088597 MS.gene048070:CDS 45.0%
GAGAGGTTAAGGTGTACTTG+AGG - chr4.4:82090612-82090631 None:intergenic 45.0%
GAGGAAGTCACACACAACAT+TGG + chr4.4:82088630-82088649 MS.gene048070:CDS 45.0%
GATCAACCCTCAGGATCAAT+AGG - chr4.4:82089996-82090015 None:intergenic 45.0%
GGTGAATAAGTGCGGTGTTT+GGG + chr4.4:82089391-82089410 MS.gene048070:intron 45.0%
GTGAAGAGACCGGCATTATA+TGG + chr4.4:82091240-82091259 MS.gene048070:CDS 45.0%
GTGAATAAGTGCGGTGTTTG+GGG + chr4.4:82089392-82089411 MS.gene048070:intron 45.0%
GTGGTGAGTGTTTGTACATG+AGG - chr4.4:82091018-82091037 None:intergenic 45.0%
TAGCCCACAAATATTGGGAC+AGG - chr4.4:82088918-82088937 None:intergenic 45.0%
TCTCCCTGTCCCAATATTTG+TGG + chr4.4:82088911-82088930 MS.gene048070:intron 45.0%
TCTGAGGGTCAGGGAAATAA+TGG + chr4.4:82088459-82088478 MS.gene048070:CDS 45.0%
TCTTGGATCCATTGCAGTCA+AGG - chr4.4:82091184-82091203 None:intergenic 45.0%
TGCAAAAGCCTTGACTGCAA+TGG + chr4.4:82091173-82091192 MS.gene048070:CDS 45.0%
TTGATGTCAAGGAAGCTGCA+AGG - chr4.4:82091960-82091979 None:intergenic 45.0%
! AGACACGATTGTGTTTTCGG+GGG + chr4.4:82091679-82091698 MS.gene048070:intron 45.0%
! AGAGGTTTTTGATGCTTCCG+AGG - chr4.4:82088203-82088222 None:intergenic 45.0%
! GAAAACAGGAGGTAATGGTG+TGG + chr4.4:82088652-82088671 MS.gene048070:intron 45.0%
! GAGACACGATTGTGTTTTCG+GGG + chr4.4:82091678-82091697 MS.gene048070:intron 45.0%
! TGAGCATAGCTCAGTTGGTA+GGG - chr4.4:82089454-82089473 None:intergenic 45.0%
! TGGTTTGGACAACCAAACTG+TGG - chr4.4:82090982-82091001 None:intergenic 45.0%
!! AAACTTTGGGATCAACCCTC+AGG - chr4.4:82090005-82090024 None:intergenic 45.0%
!! ATAGAAGTACCAGTAGTGGG+AGG + chr4.4:82091117-82091136 MS.gene048070:CDS 45.0%
!! CTGATGCAAACTGATTTGGC+GGG - chr4.4:82090687-82090706 None:intergenic 45.0%
!! GAAGGTGATAAGCATTGGTG+AGG + chr4.4:82091356-82091375 MS.gene048070:CDS 45.0%
!! GCTGATGCAAACTGATTTGG+CGG - chr4.4:82090688-82090707 None:intergenic 45.0%
!! GGGTTGATCCCAAAGTTTTC+TGG + chr4.4:82090007-82090026 MS.gene048070:intron 45.0%
!! GGTTGGTCTCCCAAATTAGT+AGG + chr4.4:82088986-82089005 MS.gene048070:intron 45.0%
!! TGTACAGCTCTGGCTTTATG+TGG + chr4.4:82088942-82088961 MS.gene048070:intron 45.0%
!! ATTAAAAAAAATGTTATATT+GGG + chr4.4:82090518-82090537 MS.gene048070:intron 5.0%
!! TATTAAAAAAAATGTTATAT+TGG + chr4.4:82090517-82090536 MS.gene048070:intron 5.0%
!!! TTTTTTTTTTTTTTAAAACT+CGG - chr4.4:82089027-82089046 None:intergenic 5.0%
AAGACGGCTGTGTCTTGAGT+TGG - chr4.4:82091619-82091638 None:intergenic 50.0%
ATCGTCGGTCGTTTCAGTCT+AGG + chr4.4:82089277-82089296 MS.gene048070:intron 50.0%
ATGTCAAGGAAGCTGCAAGG+AGG - chr4.4:82091957-82091976 None:intergenic 50.0%
CAGAGGCTCATGAGAGGTTA+AGG - chr4.4:82090623-82090642 None:intergenic 50.0%
CATTGTTATATGCAGGGGCC+AGG - chr4.4:82089425-82089444 None:intergenic 50.0%
CCAAAATGTGGTCATGGCTG+TGG + chr4.4:82089101-82089120 MS.gene048070:intron 50.0%
CGACATCGCAACTGCAATTG+CGG - chr4.4:82089182-82089201 None:intergenic 50.0%
CTTAGAGTGTGCTCCTCTCA+AGG + chr4.4:82088874-82088893 MS.gene048070:intron 50.0%
GAAATCACTCCTCCCACTAC+TGG - chr4.4:82091129-82091148 None:intergenic 50.0%
GAGGGTCAGGGAAATAATGG+TGG + chr4.4:82088462-82088481 MS.gene048070:CDS 50.0%
GGTGGGATTTGTGAAGAGAC+CGG + chr4.4:82091230-82091249 MS.gene048070:CDS 50.0%
GTGAGCATAGCTCAGTTGGT+AGG - chr4.4:82089455-82089474 None:intergenic 50.0%
TCGTCGGTCGTTTCAGTCTA+GGG + chr4.4:82089278-82089297 MS.gene048070:intron 50.0%
TTTATGTGGAGCCCCACGAT+TGG + chr4.4:82088956-82088975 MS.gene048070:intron 50.0%
! CCACAGCCATGACCACATTT+TGG - chr4.4:82089104-82089123 None:intergenic 50.0%
! CTTGAGAGGAGCACACTCTA+AGG - chr4.4:82088876-82088895 None:intergenic 50.0%
!! GATAAGCATTGGTGAGGCTG+AGG + chr4.4:82091362-82091381 MS.gene048070:CDS 50.0%
!! TGCAGCTGCATTTGCTGTTG+CGG + chr4.4:82089229-82089248 MS.gene048070:intron 50.0%
CATGAGGAATGTTGAGGGGC+TGG - chr4.4:82091002-82091021 None:intergenic 55.0%
CCAACTGAGCTATGCTCACG+AGG + chr4.4:82089456-82089475 MS.gene048070:intron 55.0%
CCTCGTGAGCATAGCTCAGT+TGG - chr4.4:82089459-82089478 None:intergenic 55.0%
CTGTCAAACACCACACGGGA+GGG - chr4.4:82091471-82091490 None:intergenic 55.0%
GCTACTCGAACGGTCATGTC+TGG + chr4.4:82089526-82089545 MS.gene048070:intron 55.0%
TGTCAAACACCACACGGGAG+GGG - chr4.4:82091470-82091489 None:intergenic 55.0%
! CGCTCCGTGTTACTCAATCC+TGG + chr4.4:82090949-82090968 MS.gene048070:CDS 55.0%
! GGGCTAGTGATGTACAGCTC+TGG + chr4.4:82088932-82088951 MS.gene048070:intron 55.0%
!! GGAATGTTGAGGGGCTGGTT+TGG - chr4.4:82090997-82091016 None:intergenic 55.0%
!! TGGCGGGTTGTCTTTGTTCC+TGG - chr4.4:82090671-82090690 None:intergenic 55.0%
AACCCCACCGTCCAATCGTG+GGG - chr4.4:82088970-82088989 None:intergenic 60.0%
CAACCCCACCGTCCAATCGT+GGG - chr4.4:82088971-82088990 None:intergenic 60.0%
CACGGGAGGGGAGATCAAAG+AGG - chr4.4:82091458-82091477 None:intergenic 60.0%
CCAAACTGTGGTGCGACACC+AGG - chr4.4:82090970-82090989 None:intergenic 60.0%
CCTCCCGTGTGGTGTTTGAC+AGG + chr4.4:82091469-82091488 MS.gene048070:intron 60.0%
CCTGTCAAACACCACACGGG+AGG - chr4.4:82091472-82091491 None:intergenic 60.0%
CTTCACCAGGGTTCGAACCC+CGG - chr4.4:82090363-82090382 None:intergenic 60.0%
CTTTGATCTCCCCTCCCGTG+TGG + chr4.4:82091458-82091477 MS.gene048070:intron 60.0%
TGTGGAGCCCCACGATTGGA+CGG + chr4.4:82088960-82088979 MS.gene048070:intron 60.0%
! GGTGTTTGGGGTTCGAACCC+TGG + chr4.4:82089404-82089423 MS.gene048070:intron 60.0%
!! CCTGGTGTCGCACCACAGTT+TGG + chr4.4:82090967-82090986 MS.gene048070:CDS 60.0%
AAGGTCCGGGGTTCGAACCC+TGG + chr4.4:82090355-82090374 MS.gene048070:intron 65.0%
AGCCCCACGATTGGACGGTG+GGG + chr4.4:82088965-82088984 MS.gene048070:intron 65.0%
CCAACCCCACCGTCCAATCG+TGG - chr4.4:82088972-82088991 None:intergenic 65.0%
CCACGATTGGACGGTGGGGT+TGG + chr4.4:82088969-82088988 MS.gene048070:intron 65.0%
CGGGGTTCGAACCCTGGTGA+AGG + chr4.4:82090361-82090380 MS.gene048070:intron 65.0%
GAGCCCCACGATTGGACGGT+GGG + chr4.4:82088964-82088983 MS.gene048070:intron 65.0%
GGAGCCCCACGATTGGACGG+TGG + chr4.4:82088963-82088982 MS.gene048070:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 82087985 82092101 82087985 ID=MS.gene048070
chr4.4 mRNA 82087985 82092101 82087985 ID=MS.gene048070.t1;Parent=MS.gene048070
chr4.4 exon 82087985 82088662 82087985 ID=MS.gene048070.t1.exon1;Parent=MS.gene048070.t1
chr4.4 CDS 82087985 82088662 82087985 ID=cds.MS.gene048070.t1;Parent=MS.gene048070.t1
chr4.4 exon 82090598 82091383 82090598 ID=MS.gene048070.t1.exon2;Parent=MS.gene048070.t1
chr4.4 CDS 82090598 82091383 82090598 ID=cds.MS.gene048070.t1;Parent=MS.gene048070.t1
chr4.4 exon 82091946 82092101 82091946 ID=MS.gene048070.t1.exon3;Parent=MS.gene048070.t1
chr4.4 CDS 82091946 82092101 82091946 ID=cds.MS.gene048070.t1;Parent=MS.gene048070.t1
Gene Sequence

>MS.gene048070

ATGGCTTCTGAAGAACCACAAGAAGAGTCAAAAACGATTCCACTGAAAATCTTAATAGACAGAGAAAACAACAAAGTTGTCGCTGTAGAATCAACCAAAGACTTTGTTGACACTCTCTTCAGCTTCCTTTCTCTTCCACTTGCTACTATCATTCGCCTCTTAACCACACACAACAACGATGATCAACAACAAGAAGCATCAGAATCATCATCATTCCTCGGAAGCATCAAAAACCTCTATGAAAGCCTACAAAACCTCACTCCAAATGATGTTTGGAACCCTGTCTGCAAACAAATGTTGTTGAACCCGAAGAATCCATGTGAATCATTATGCAAGAAACTTTTCTTGAACATTGATGACACTGAATGGTCAAGTAAGTTTTTTGTGTGTGATGCTTGTAACAAGTTTACAACTTTTCAGGATCTTGATTGTACTTGTGGAAAACCCACTAATAGACAACCTAAAAATTTGGATTCTGAGGGTCAGGGAAATAATGGTGGTATTGTTGATGCTTTAAATGGGGTTTTTGTTAAGGACAATGGGTCGTTATTTTTGGTGTTTGATGATTTGAAGATTGTGCCTAGTTCTTTGGTGACTTCCATGCAGATGTTGATGGAATTGGGGTATTCTGATTTGAGTCAATTAGAGGAAGTCACACACAACATTGGAAAACAGGAGGTAATGGTGTGGTGTTTTGCAATGTGTATTTTTATGTCATGTTACTATGTTGCACCGACATTTTTTATTGAAGGCGTGTGTCTGACACCGTCACTTATGCGACACTTATGATTGAATTGAATTATGTCATTTTCTTAAAACTTTATCAGCGTTGATGTGGCAGTGTTGTGTCCGTGTTTGTTTCATAACATGTTAGTTTGTAGAGTAAGACCTTAGAGTGTGCTCCTCTCAAGGTTTCACATTCGAATTCTCCCTGTCCCAATATTTGTGGGCTAGTGATGTACAGCTCTGGCTTTATGTGGAGCCCCACGATTGGACGGTGGGGTTGGTCTCCCAAATTAGTAGGTCCTTGAACTGGATACCGAGTTTTAAAAAAAAAAAAAAATATTGTAGTGTAAGAAAAATTCGAAAGAATATTTGAAATTGTGAATCATTGTTCCAAAATGTGGTCATGGCTGTGGTTACGATGCGAACCTTGATATTGTAGTAAAATGAGGGTAATTGTGGTCGATGCAACCGCAATTGCAGTTGCGATGTCGTTGCAGAGACCTATAAAACGTTTATATTGCAGCTGCATTTGCTGTTGCGGACTGCAATTTAGAACTATGTTGTGAATCGTCGGTCGTTTCAGTCTAGGGTTATTTAGAACTCAAGTCTTAAGTGTTAGCATTTTAGTTTAGTGTTAATTTTTTGGTCTAGTAGCCTAATGACTAGAATTCACCTTGTAAGGTGAATAAGTGCGGTGTTTGGGGTTCGAACCCTGGCCCCTGCATATAACAATGCATTCTCCCTACCAACTGAGCTATGCTCACGAGGAATTCTGTGTTAATTAGAATACACTTGTTAACTATGAGTATCAAAATGCTACTCGAACGGTCATGTCTGGATCAAAATAACTACTGAATAATGGTTTTGAGGTCTTTTCTGAATTTTTCTTGTTTCACAGACAAGCTAACAATGTCCTGTAATTTGAGGTATTGAATTGGTGATTCACTCTTTTTACTTTTTGAACTTGCATTGGATCTTTAGACTGTTCTTGAATTATGAACCTTCACTTTATAACTTGATGTTTTTTAGGTGGTTTGTATTTGGAATAGCATCTGTTAAAAACTTGATAGGAGAGCATTCCTTAAGAAGGTCTATGTGAGAAAGAATAGACAAGAAAGTAAGGAGGGAAATAGAGCGGTTGTAACTGATATAGTTGTAAACTGATAGAGAAACAGAATATAGTAGGAGGGAATAAGAGTTTTGCAAAGCTAAGTAAAAATTGGGAGAGTTTTGGGGCACTTTTGAATTAGCCTAGAGTTTTATCACTTTCTATTCCTTTGATCCTATTGATCCTGAGGGTTGATCCCAAAGTTTTCTGGTGTACCATAAATTAAAAGGGCAAACATTACTTAATAAACATTCACAATGCTATGATGGTTTACTTAGTGGGTAGTTGGTGTACTTAAATCATGGACACACTATAAATCTTCAGTTAGAAATTAGTACTCCAGATATCCATTCCAATAATGCTCATCGTAACAAATTAGTTAGTATTTCTTTTGAATATAACAAACAACTAATAAGTTTTATTGTTATTGCTGCTGTGTGATCAGTAGAACTAGAACATACTGAAATGTGTTCGTCAGAGTAGCATTGTGTATCTCAACTAATTTGAGTTAAGAATTAAAGGTGTTGAAATAGTTAAAGGTCCGGGGTTCGAACCCTGGTGAAGGAGAAAAATACTAACATCACTAGTAATAAATATGCTAACATTTGCCTATCCAAAACACACACACACACTGTTATTGTTACCGTTTGGTTTAATATCTTGTATTTCTGTTATGTAATGTGAATTTGTTAGTGAAATATTAAAAAAAATGTTATATTGGGGTCAATTGTGTATGTTATCTTGGCTAAAATTGGTTTCCCTGTCCTTTTGATGTACAGATGATGAACCTCCTCAAGTACACCTTAACCTCTCATGAGCCTCTGACAAATACAATTTTGAAAAGCAGCTCCAGGAACAAAGACAACCCGCCAAATCAGTTTGCATCAGCAGTCAGAGTAAAAACTTGTACCCGCGACATTAAAATGGATGTTAAGCTAGTGCAAAGTAAATCTCAGAAAAAGATAATCTGTGCAGAAGCCAGTGAAAACTTTGTTGACTTCATGCTTAGCTTCCTTACAATACCATTAGGGTCCATTGTAAAGGTTTTGGATGGTAACTCTTTTGTTGGATGTGTTGATAATTTGTACAAGAGTGTAGAGAACTTGGACTCTTTGTGGTGTACGGACTCGCGCTCCGTGTTACTCAATCCTGGTGTCGCACCACAGTTTGGTTGTCCAAACCAGCCCCTCAACATTCCTCATGTACAAACACTCACCACTACATATTATTATGGTACAGGAACATCAAAGCAAGAGAGGGATTTACGCTATGGTAAAGGGTATACTATCTATAAAACAATAGAAGTACCAGTAGTGGGAGGAGTGATTTCTAAGACAATGGGGTCAATTTATAATGCAAAAGCCTTGACTGCAATGGATCCAAGATCTCCTAACAAATCAATTAAAAATGTGGTGGGATTTGTGAAGAGACCGGCATTATATGGTGTAGGAGATGATCTAAAAGTAAAACCACTTTCTGCTAATTCTTGCATTTCATATTTGAAAGAATTAAGCCTTCCCCTTGTTGATCTTGAAGTGAAGGTGATAAGCATTGGTGAGGCTGAGGTAAAGTGACTACTATTACTAAACTTATAATTTTTTTTTCCTTTTGTTTATTTGTTGTTCCAAGTTTTTAGCCTCTTTGATCTCCCCTCCCGTGTGGTGTTTGACAGGTATGTGATACTGATACGCATCACATACCCTCCTAATACCTACCCATAAGTATCCAATACTTTTATTGATTCTTTTTAAAAATATTTTCATCGATACTTCTCAAATACATCTTCAATACTTCTTACCAACTCAAGACACAGCCGTCTTCCAGATACACTACATTTTCGATATGCTTTACTAACTAAAGAGACACGATTGTGTTTTCGGGGGCACATTCTTCGTAGAAATATTATGTTTTGATATAGGTTGGGTGGGGTAATTATATATATGTAACTATGCTTAGATGTTATGATTACAAGTACTTTTATGTAAATTGCGATTACACTAATATCTTTATAAACGTTTTCTAATGCTATACATATCATGGTTTTGTCATATCGTCATTTATGTGTCATGTTGAATTCATATCATACTATGTATCCAGGATTCTTACCTCTTGATTTGCAATTTGCAGGCTTTGAGCCTCCTTGCAGCTTCCTTGACATCAAAATTTACACTGACTAGTGGACTAGAAGAATTTTTTAATGTGCCAAAACACGATTCAAATTTAACATCGAAGTATGTACAAACTAGTATCCTTGATGAACTTGCAAAGGATCCTAAACCGTAA
Protein sequence

>MS.gene048070.t1

MASEEPQEESKTIPLKILIDRENNKVVAVESTKDFVDTLFSFLSLPLATIIRLLTTHNNDDQQQEASESSSFLGSIKNLYESLQNLTPNDVWNPVCKQMLLNPKNPCESLCKKLFLNIDDTEWSSKFFVCDACNKFTTFQDLDCTCGKPTNRQPKNLDSEGQGNNGGIVDALNGVFVKDNGSLFLVFDDLKIVPSSLVTSMQMLMELGYSDLSQLEEVTHNIGKQEMMNLLKYTLTSHEPLTNTILKSSSRNKDNPPNQFASAVRVKTCTRDIKMDVKLVQSKSQKKIICAEASENFVDFMLSFLTIPLGSIVKVLDGNSFVGCVDNLYKSVENLDSLWCTDSRSVLLNPGVAPQFGCPNQPLNIPHVQTLTTTYYYGTGTSKQERDLRYGKGYTIYKTIEVPVVGGVISKTMGSIYNAKALTAMDPRSPNKSIKNVVGFVKRPALYGVGDDLKVKPLSANSCISYLKELSLPLVDLEVKVISIGEAEALSLLAASLTSKFTLTSGLEEFFNVPKHDSNLTSKYVQTSILDELAKDPKP