AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051488

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051488.t1 MTR_1g014060 69.286 420 27 3 23 411 9 357 0.0 556
MS.gene051488.t1 MTR_7g066570 52.966 472 142 5 1 411 1 453 7.32e-151 441
MS.gene051488.t1 MTR_7g066570 27.556 225 149 6 14 231 257 474 6.23e-16 80.5
MS.gene051488.t1 MTR_7g012680 54.204 452 132 6 1 411 1 418 4.18e-147 427
MS.gene051488.t1 MTR_7g066260 50.787 445 172 7 2 411 3 435 4.72e-136 400
MS.gene051488.t1 MTR_7g066260 25.463 216 129 5 17 231 272 456 1.31e-12 70.1
MS.gene051488.t1 MTR_7g058710 49.892 461 162 10 6 411 4 450 1.90e-132 390
MS.gene051488.t1 MTR_7g066350 49.886 439 162 10 10 411 5 422 2.47e-124 369
MS.gene051488.t1 MTR_7g066340 48.000 450 165 8 5 411 3 426 2.25e-119 357
MS.gene051488.t1 MTR_1g041315 45.514 457 186 9 1 411 1 440 3.07e-116 349
MS.gene051488.t1 MTR_2g029400 44.068 472 167 10 1 439 1 408 2.69e-112 336
MS.gene051488.t1 MTR_7g066580 45.455 451 154 14 20 411 1 418 3.14e-108 327
MS.gene051488.t1 MTR_7g066580 26.180 233 153 6 14 233 215 441 1.82e-14 75.5
MS.gene051488.t1 MTR_7g058700 47.343 414 140 8 26 411 531 894 1.60e-107 339
MS.gene051488.t1 MTR_7g066290 44.866 448 168 12 1 411 1 406 5.41e-104 316
MS.gene051488.t1 MTR_7g066400 44.053 454 167 10 1 411 1 410 5.87e-100 306
MS.gene051488.t1 MTR_7g066400 25.792 221 134 8 13 231 239 431 2.95e-11 65.5
MS.gene051488.t1 MTR_7g066360 45.759 448 180 11 1 411 1 422 5.49e-98 302
MS.gene051488.t1 MTR_7g066430 39.434 459 213 9 14 411 4 458 4.37e-94 293
MS.gene051488.t1 MTR_7g066430 29.915 234 143 6 11 231 254 479 1.85e-19 90.9
MS.gene051488.t1 MTR_7g066410 37.526 477 216 10 15 411 11 485 8.39e-88 277
MS.gene051488.t1 MTR_7g066410 27.869 244 153 7 2 231 272 506 7.60e-19 89.4
MS.gene051488.t1 MTR_7g066310 43.243 407 171 13 11 411 4 356 1.36e-82 260
MS.gene051488.t1 MTR_7g063900 37.472 451 224 15 14 411 10 455 2.27e-77 249
MS.gene051488.t1 MTR_7g063880 39.597 447 222 17 1 411 1 435 3.90e-77 248
MS.gene051488.t1 MTR_7g063890 36.889 450 229 11 13 411 26 471 7.01e-77 248
MS.gene051488.t1 MTR_7g066480 37.020 443 188 8 13 419 15 402 8.21e-75 241
MS.gene051488.t1 MTR_7g063660 35.230 457 241 11 13 425 8 453 1.46e-74 241
MS.gene051488.t1 MTR_7g063660 25.974 231 141 7 14 230 250 464 7.80e-19 89.0
MS.gene051488.t1 MTR_7g062300 34.565 460 254 12 1 419 1 454 2.65e-72 235
MS.gene051488.t1 MTR_7g062280 34.764 466 233 13 6 411 4 458 1.10e-70 232
MS.gene051488.t1 MTR_7g066490 36.301 438 182 8 14 419 16 388 5.17e-69 225
MS.gene051488.t1 MTR_3g007740 34.312 443 228 10 13 419 8 423 1.52e-64 214
MS.gene051488.t1 MTR_7g063840 34.879 453 240 14 1 411 1 440 1.58e-63 213
MS.gene051488.t1 MTR_7g063840 25.333 225 148 5 14 231 250 461 4.23e-13 71.2
MS.gene051488.t1 MTR_7g063920 34.607 445 205 14 1 406 1 398 6.01e-63 210
MS.gene051488.t1 MTR_7g063920 27.556 225 139 7 14 231 217 424 1.21e-16 82.0
MS.gene051488.t1 MTR_7g063820 36.564 454 233 14 8 411 3 451 9.07e-63 211
MS.gene051488.t1 MTR_4g019310 33.473 478 235 17 1 411 1 462 3.31e-62 209
MS.gene051488.t1 MTR_4g019310 26.786 224 150 7 10 226 262 478 4.29e-14 74.7
MS.gene051488.t1 MTR_7g063670 35.616 438 220 11 10 411 13 424 2.49e-61 206
MS.gene051488.t1 MTR_7g063670 26.364 220 132 10 15 231 253 445 2.09e-12 69.3
MS.gene051488.t1 MTR_7g063830 39.118 340 174 11 8 318 4 339 2.78e-61 206
MS.gene051488.t1 MTR_3g065200 32.779 421 225 11 12 406 1 389 6.01e-55 189
MS.gene051488.t1 MTR_4g017610 30.769 481 233 14 10 419 9 460 1.21e-51 181
MS.gene051488.t1 MTR_7g066280 34.536 388 160 9 93 411 1 363 1.76e-49 174
MS.gene051488.t1 MTR_4g019340 30.769 468 233 14 15 411 39 486 1.05e-48 174
MS.gene051488.t1 MTR_4g019340 24.885 217 140 6 14 225 303 501 6.11e-11 64.7
MS.gene051488.t1 MTR_4g017830 30.408 490 246 19 1 411 1 474 1.97e-44 162
MS.gene051488.t1 MTR_4g017410 29.638 469 251 14 8 411 3 457 1.35e-43 160
MS.gene051488.t1 MTR_4g017440 28.889 495 264 17 1 419 1 483 2.38e-42 156
MS.gene051488.t1 MTR_7g066680 36.078 255 95 5 214 411 37 280 5.23e-40 147
MS.gene051488.t1 MTR_7g066680 23.445 209 146 6 14 216 86 286 1.15e-11 66.2
MS.gene051488.t1 MTR_7g062270 40.314 191 99 6 1 186 1 181 9.80e-37 139
MS.gene051488.t1 MTR_4g017470 26.626 492 247 12 1 419 1 451 2.33e-34 134
MS.gene051488.t1 MTR_2g067310 41.618 173 61 4 25 197 58 190 2.12e-29 115
MS.gene051488.t1 MTR_4g017550 28.082 438 224 18 43 405 20 441 6.25e-28 115
MS.gene051488.t1 MTR_8g445860 31.915 235 138 7 14 236 13 237 9.05e-27 108
MS.gene051488.t1 MTR_1g115440 30.544 239 143 4 13 237 10 239 9.92e-25 102
MS.gene051488.t1 MTR_0150s0010 30.738 244 146 5 8 237 4 238 3.29e-24 100
MS.gene051488.t1 MTR_8g023240 27.157 313 178 10 15 294 38 333 6.79e-22 98.6
MS.gene051488.t1 MTR_7g063720 28.636 220 133 7 14 231 23 220 8.00e-20 88.6
MS.gene051488.t1 MTR_7g063720 31.677 161 86 3 262 411 52 199 2.18e-16 79.0
MS.gene051488.t1 MTR_4g019240 41.584 101 51 2 10 102 9 109 1.25e-17 80.9
MS.gene051488.t1 MTR_1g115455 27.801 241 139 7 14 236 9 232 9.63e-15 73.9
MS.gene051488.t1 MTR_1g115450 38.824 85 47 1 14 98 7 86 1.43e-14 70.9
MS.gene051488.t1 MTR_7g063690 57.576 66 26 1 1 66 1 64 4.53e-14 72.0
MS.gene051488.t1 MTR_7g063690 35.455 110 68 2 133 241 70 177 8.13e-11 62.4
MS.gene051488.t1 MTR_7g100420 73.810 42 11 0 15 56 40 81 6.69e-13 70.5
MS.gene051488.t1 MTR_7g100420 29.565 230 141 8 14 234 177 394 1.56e-11 66.2
MS.gene051488.t1 MTR_1g115470 36.364 88 51 1 14 101 6 88 2.01e-11 65.9
MS.gene051488.t1 MTR_0150s0030 32.673 101 59 3 8 104 2 97 4.69e-11 62.4
MS.gene051488.t1 MTR_8g445920 32.584 89 55 1 8 96 4 87 8.65e-11 59.3
MS.gene051488.t1 MTR_8g044890 32.584 89 55 1 8 96 4 87 8.65e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051488.t1 AT3G09110 37.021 235 142 1 14 248 9 237 2.29e-44 158
MS.gene051488.t1 AT5G01120 27.527 465 265 11 15 415 10 466 2.08e-38 145
MS.gene051488.t1 AT3G09140 28.025 471 253 12 14 411 9 466 1.69e-37 143
MS.gene051488.t1 AT3G09120 32.593 270 166 6 13 271 5 269 2.77e-36 136
MS.gene051488.t1 AT5G01150 27.586 464 250 13 14 411 9 452 2.00e-35 137
MS.gene051488.t1 AT5G01130 28.873 426 246 8 14 405 9 411 2.21e-35 136
MS.gene051488.t1 AT3G09140 27.455 499 248 15 14 411 9 494 2.39e-33 132
MS.gene051488.t1 AT5G43240 27.039 466 262 16 15 410 10 467 3.65e-33 131
MS.gene051488.t1 AT5G43240 27.039 466 262 16 15 410 10 467 3.65e-33 131
MS.gene051488.t1 AT5G43240 27.039 466 262 16 15 410 10 467 3.65e-33 131
MS.gene051488.t1 AT5G01140 25.446 448 252 11 14 411 9 424 1.61e-27 114
MS.gene051488.t1 AT5G01140 27.917 240 129 11 15 236 241 454 1.61e-13 72.8
MS.gene051488.t1 AT5G37320 25.108 462 260 18 15 409 10 452 6.45e-21 95.5

Find 75 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAACCAATTTGAGCTTAAA+TGG 0.177100 1.3:+8078669 None:intergenic
CAAAGTTAGCTTGAGAATTA+TGG 0.249994 1.3:-8079915 MS.gene051488:CDS
GAGGAAATAATCATCAAAAT+TGG 0.250442 1.3:-8078474 MS.gene051488:intron
AATATTGAAGCAGTGGAATT+TGG 0.254893 1.3:-8079773 MS.gene051488:CDS
CCTCCAGAACATTTGAGTTT+AGG 0.260762 1.3:-8079491 MS.gene051488:CDS
TAAAATTCCATGGAGTTTCT+TGG 0.280411 1.3:+8079665 None:intergenic
CTGTGAGATTAAATATCTTC+TGG 0.304715 1.3:+8078898 None:intergenic
TTTCCTAAACTCAAATGTTC+TGG 0.304784 1.3:+8079488 None:intergenic
TAAAGTTCCTCTGTCTGATT+TGG 0.321917 1.3:-8078496 MS.gene051488:CDS
TGTACCATTTAAGCTCAAAT+TGG 0.323929 1.3:-8078673 MS.gene051488:CDS
TTAAATGGTACAAACTTATC+AGG 0.348518 1.3:+8078684 None:intergenic
CAATGTTCAGTTTCATCTGC+TGG 0.399362 1.3:+8079639 None:intergenic
AGTACTTCTTCTGTAGTGAT+TGG 0.403067 1.3:-8079601 MS.gene051488:CDS
ATCTTGATCAACAATATCTA+TGG 0.406573 1.3:-8079718 MS.gene051488:CDS
TTAAGATTAAATCTGTCAAA+GGG 0.410150 1.3:+8079192 None:intergenic
TTCAAATGATGCTGAAACAT+AGG 0.414974 1.3:+8078638 None:intergenic
GTACTTCTTCTGTAGTGATT+GGG 0.418301 1.3:-8079600 MS.gene051488:CDS
ACAACTGTTGCCAAAACATT+AGG 0.426351 1.3:+8079410 None:intergenic
TCAACGTCTTCTTTGACAAA+TGG 0.430286 1.3:-8078316 MS.gene051488:CDS
CAATCATTTCTCCACCTTGA+CGG 0.431842 1.3:+8078273 None:intergenic
AGTTCCTCTGTCTGATTTGG+AGG 0.440102 1.3:-8078493 MS.gene051488:CDS
GCTTAGTTAACTTCTCTTTG+AGG 0.442124 1.3:+8078873 None:intergenic
CACCTTACCTTTGGGAGCAG+TGG 0.444063 1.3:-8078993 MS.gene051488:CDS
GAACATTTGAGTTTAGGAAA+TGG 0.449684 1.3:-8079485 MS.gene051488:CDS
TTCAACGGATTGAGTTTCAT+TGG 0.452229 1.3:+8079946 None:intergenic
TCTGCCACCATGTATGTTGA+TGG 0.452833 1.3:+8078576 None:intergenic
TGTGAGATTAAATATCTTCT+GGG 0.455073 1.3:+8078899 None:intergenic
ATGCTATTGTGGTAGAGTAC+TGG 0.479902 1.3:-8079525 MS.gene051488:CDS
AGAGTTCTATATGCTGAGGC+TGG 0.480045 1.3:-8079875 MS.gene051488:CDS
TGCAGATCTAACAAAAGAAA+AGG 0.486365 1.3:-8078733 MS.gene051488:intron
AGCAGCATTTCTTTGCATGC+CGG 0.487860 1.3:+8079692 None:intergenic
TGGAGAGAAACAATCTGATA+CGG 0.489375 1.3:-8079114 MS.gene051488:CDS
TTTAAGATTAAATCTGTCAA+AGG 0.492459 1.3:+8079191 None:intergenic
GAGTGTACTAGAAGAGAAAG+TGG 0.496261 1.3:-8079578 MS.gene051488:CDS
CCATTTAAGCTCAAATTGGT+TGG 0.500263 1.3:-8078669 MS.gene051488:CDS
GCAGTGGTGCATATGCTTCA+AGG 0.520737 1.3:-8078977 MS.gene051488:CDS
AACTTTGTCAACTTGTTCAA+CGG 0.522676 1.3:+8079931 None:intergenic
TGGATTCTACCACGGAAATG+TGG 0.528178 1.3:+8078839 None:intergenic
GAATTATGGTGGACAAAGAA+AGG 0.530685 1.3:-8079901 MS.gene051488:CDS
GAAGTCAAATATTGAAGCAG+TGG 0.536513 1.3:-8079780 MS.gene051488:CDS
CTGCTGGAAATAAAATTCCA+TGG 0.541132 1.3:+8079655 None:intergenic
CACCACTGCTCCCAAAGGTA+AGG 0.543542 1.3:+8078991 None:intergenic
TCTATATGCTGAGGCTGGGA+AGG 0.548508 1.3:-8079870 MS.gene051488:CDS
AGTGTACTAGAAGAGAAAGT+GGG 0.556427 1.3:-8079577 MS.gene051488:CDS
CTCATTGTATCGAGGTGTGT+CGG 0.559520 1.3:-8079741 MS.gene051488:CDS
GGATTCTACCACGGAAATGT+GGG 0.559747 1.3:+8078840 None:intergenic
CAGAAGATATTTAATCTCAC+AGG 0.560764 1.3:-8078897 MS.gene051488:CDS
GAGTTCTATATGCTGAGGCT+GGG 0.563406 1.3:-8079874 MS.gene051488:CDS
GTACATCTACATCAGAAGCT+TGG 0.564486 1.3:-8079389 MS.gene051488:CDS
TGTGGAAATAAGCAAGAAAG+AGG 0.566925 1.3:-8079333 MS.gene051488:intron
GGAGAGAAACAATCTGATAC+GGG 0.574172 1.3:-8079113 MS.gene051488:CDS
CCTAAACTCAAATGTTCTGG+AGG 0.578393 1.3:+8079491 None:intergenic
GCTGCAGCCAAGAAACTCCA+TGG 0.582763 1.3:-8079672 MS.gene051488:CDS
ATAGTAGATATTGACGACAT+TGG 0.589636 1.3:+8078537 None:intergenic
TGATAATTTATACAAAAGCA+TGG 0.590842 1.3:-8078933 MS.gene051488:CDS
AGTTAGCTTGAGAATTATGG+TGG 0.600829 1.3:-8079912 MS.gene051488:CDS
TAGAGGACCATCAACATACA+TGG 0.625050 1.3:-8078583 MS.gene051488:CDS
TCAACAATATCTATGGTCAC+CGG 0.632396 1.3:-8079711 MS.gene051488:CDS
CAGTGTGCCCCACATTTCCG+TGG 0.638161 1.3:-8078848 MS.gene051488:intron
GAACATTGATGACACACCGA+TGG 0.639013 1.3:-8079624 MS.gene051488:CDS
TAAGATTAAATCTGTCAAAG+GGG 0.639105 1.3:+8079193 None:intergenic
GAACAGAGTTCTATATGCTG+AGG 0.646830 1.3:-8079879 MS.gene051488:CDS
ATATGCACCACTGCTCCCAA+AGG 0.647683 1.3:+8078986 None:intergenic
GCAGTTCATAACAACCGTCA+AGG 0.650677 1.3:-8078287 MS.gene051488:CDS
AGAAACAATCTGATACGGGT+AGG 0.651343 1.3:-8079109 MS.gene051488:intron
TGCTATCGTTGAACAAACTG+TGG 0.652160 1.3:-8079351 MS.gene051488:CDS
CTACAGAAGAAGTACTCCAT+CGG 0.654069 1.3:+8079608 None:intergenic
ATTTCCTCCAAATCAGACAG+AGG 0.658378 1.3:+8078489 None:intergenic
GCGGCATCGTCATATGCTAG+AGG 0.665739 1.3:-8078600 MS.gene051488:CDS
GATTCTACCACGGAAATGTG+GGG 0.668083 1.3:+8078841 None:intergenic
AGCATTAGCTCATTGTATCG+AGG 0.679958 1.3:-8079749 MS.gene051488:CDS
GTTCATAACAACCGTCAAGG+TGG 0.684380 1.3:-8078284 MS.gene051488:CDS
CGGAAATGTGGGGCACACTG+AGG 0.686859 1.3:+8078851 None:intergenic
AGTCGTGCAATAGTCCCTAG+AGG 0.729079 1.3:+8079812 None:intergenic
AGGACCATCAACATACATGG+TGG 0.750812 1.3:-8078580 MS.gene051488:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATATGAATTCGGAAA+TGG - chr1.3:8079087-8079106 MS.gene051488:intron 20.0%
!! CAAAGCAAAAAATATGAATT+CGG - chr1.3:8079081-8079100 MS.gene051488:intron 20.0%
!! GCAAATTAAAATAAATCACA+AGG + chr1.3:8079820-8079839 None:intergenic 20.0%
!! TGATAATTTATACAAAAGCA+TGG - chr1.3:8079288-8079307 MS.gene051488:intron 20.0%
!! TTAAGATTAAATCTGTCAAA+GGG + chr1.3:8079032-8079051 None:intergenic 20.0%
!!! TTTAAGATTAAATCTGTCAA+AGG + chr1.3:8079033-8079052 None:intergenic 20.0%
! AATCATCAAAATTGGTAAGA+AGG - chr1.3:8079755-8079774 MS.gene051488:CDS 25.0%
! ACAAGGCATAATATAACAAT+TGG + chr1.3:8079803-8079822 None:intergenic 25.0%
! ATCTTGATCAACAATATCTA+TGG - chr1.3:8078503-8078522 MS.gene051488:CDS 25.0%
! ATTACAGATTATATAGAAGC+CGG + chr1.3:8078922-8078941 None:intergenic 25.0%
! GAGGAAATAATCATCAAAAT+TGG - chr1.3:8079747-8079766 MS.gene051488:CDS 25.0%
! TAAGATTAAATCTGTCAAAG+GGG + chr1.3:8079031-8079050 None:intergenic 25.0%
! TATGTATGACAATAATATGC+TGG + chr1.3:8079441-8079460 None:intergenic 25.0%
! TGTGAGATTAAATATCTTCT+GGG + chr1.3:8079325-8079344 None:intergenic 25.0%
! TTAAATGGTACAAACTTATC+AGG + chr1.3:8079540-8079559 None:intergenic 25.0%
!!! AGTTTTTTAACATTACCTCT+AGG - chr1.3:8078394-8078413 MS.gene051488:intron 25.0%
!!! CGAATTCATATTTTTTGCTT+TGG + chr1.3:8079083-8079102 None:intergenic 25.0%
!!! GTTTTTTAACATTACCTCTA+GGG - chr1.3:8078395-8078414 MS.gene051488:intron 25.0%
AATATTGAAGCAGTGGAATT+TGG - chr1.3:8078448-8078467 MS.gene051488:intron 30.0%
AGGTATCAAAAATGCTATTG+TGG - chr1.3:8078685-8078704 MS.gene051488:CDS 30.0%
ATACTATAATAGCGATAGTG+AGG - chr1.3:8079458-8079477 MS.gene051488:CDS 30.0%
ATAGTAGATATTGACGACAT+TGG + chr1.3:8079687-8079706 None:intergenic 30.0%
ATGACAATAATATGCTGGAA+AGG + chr1.3:8079436-8079455 None:intergenic 30.0%
CAGAAGATATTTAATCTCAC+AGG - chr1.3:8079324-8079343 MS.gene051488:intron 30.0%
CTGTGAGATTAAATATCTTC+TGG + chr1.3:8079326-8079345 None:intergenic 30.0%
GTAATAATTGGATTCTACCA+CGG + chr1.3:8079393-8079412 None:intergenic 30.0%
TAAAATTCCATGGAGTTTCT+TGG + chr1.3:8078559-8078578 None:intergenic 30.0%
TGCAGATCTAACAAAAGAAA+AGG - chr1.3:8079488-8079507 MS.gene051488:CDS 30.0%
TGTACCATTTAAGCTCAAAT+TGG - chr1.3:8079548-8079567 MS.gene051488:CDS 30.0%
TTCAAATGATGCTGAAACAT+AGG + chr1.3:8079586-8079605 None:intergenic 30.0%
TTTCCTAAACTCAAATGTTC+TGG + chr1.3:8078736-8078755 None:intergenic 30.0%
! AACTTTGTCAACTTGTTCAA+CGG + chr1.3:8078293-8078312 None:intergenic 30.0%
! CAAAGTTAGCTTGAGAATTA+TGG - chr1.3:8078306-8078325 MS.gene051488:CDS 30.0%
! GAACATTTGAGTTTAGGAAA+TGG - chr1.3:8078736-8078755 MS.gene051488:intron 30.0%
! TTTTGTGATGCCTAATGTTT+TGG - chr1.3:8078801-8078820 MS.gene051488:intron 30.0%
!! ATTTCATCCTTTGCTTTTGT+AGG - chr1.3:8078969-8078988 MS.gene051488:CDS 30.0%
ACAACTGTTGCCAAAACATT+AGG + chr1.3:8078814-8078833 None:intergenic 35.0%
AGTACTTCTTCTGTAGTGAT+TGG - chr1.3:8078620-8078639 MS.gene051488:CDS 35.0%
AGTGTACTAGAAGAGAAAGT+GGG - chr1.3:8078644-8078663 MS.gene051488:CDS 35.0%
ATAATATGCTGGAAAGGATG+CGG + chr1.3:8079430-8079449 None:intergenic 35.0%
CATCAAAATTGGTAAGAAGG+AGG - chr1.3:8079758-8079777 MS.gene051488:CDS 35.0%
CCAACCAATTTGAGCTTAAA+TGG + chr1.3:8079555-8079574 None:intergenic 35.0%
CCATTTAAGCTCAAATTGGT+TGG - chr1.3:8079552-8079571 MS.gene051488:CDS 35.0%
CTGCTGGAAATAAAATTCCA+TGG + chr1.3:8078569-8078588 None:intergenic 35.0%
GAAGTCAAATATTGAAGCAG+TGG - chr1.3:8078441-8078460 MS.gene051488:intron 35.0%
GCTTAGTTAACTTCTCTTTG+AGG + chr1.3:8079351-8079370 None:intergenic 35.0%
GTACATGGTTGTGAAACTAA+TGG - chr1.3:8079134-8079153 MS.gene051488:CDS 35.0%
GTACTTCTTCTGTAGTGATT+GGG - chr1.3:8078621-8078640 MS.gene051488:CDS 35.0%
TAAAGTTCCTCTGTCTGATT+TGG - chr1.3:8079725-8079744 MS.gene051488:CDS 35.0%
TCAACAATATCTATGGTCAC+CGG - chr1.3:8078510-8078529 MS.gene051488:CDS 35.0%
TCAACGTCTTCTTTGACAAA+TGG - chr1.3:8079905-8079924 MS.gene051488:CDS 35.0%
TCAACTACCTACAAAAGCAA+AGG + chr1.3:8078979-8078998 None:intergenic 35.0%
TGAAAAATTCGCATGCATAG+CGG - chr1.3:8079602-8079621 MS.gene051488:CDS 35.0%
TGGAGAGAAACAATCTGATA+CGG - chr1.3:8079107-8079126 MS.gene051488:intron 35.0%
TGTGGAAATAAGCAAGAAAG+AGG - chr1.3:8078888-8078907 MS.gene051488:CDS 35.0%
! AGTTAGCTTGAGAATTATGG+TGG - chr1.3:8078309-8078328 MS.gene051488:CDS 35.0%
! AGTTTTCTCACCTTACCTTT+GGG - chr1.3:8079220-8079239 MS.gene051488:CDS 35.0%
!! CAAGAAAGAGGTATGTTTTC+CGG - chr1.3:8078900-8078919 MS.gene051488:CDS 35.0%
!! GAATTATGGTGGACAAAGAA+AGG - chr1.3:8078320-8078339 MS.gene051488:CDS 35.0%
!! TTCAACGGATTGAGTTTCAT+TGG + chr1.3:8078278-8078297 None:intergenic 35.0%
AGAAACAATCTGATACGGGT+AGG - chr1.3:8079112-8079131 MS.gene051488:CDS 40.0%
AGCATTAGCTCATTGTATCG+AGG - chr1.3:8078472-8078491 MS.gene051488:intron 40.0%
AGGCATCACAAAAAGATCGT+CGG + chr1.3:8078794-8078813 None:intergenic 40.0%
ATGCTATTGTGGTAGAGTAC+TGG - chr1.3:8078696-8078715 MS.gene051488:CDS 40.0%
ATTTCCTCCAAATCAGACAG+AGG + chr1.3:8079735-8079754 None:intergenic 40.0%
CAATCATTTCTCCACCTTGA+CGG + chr1.3:8079951-8079970 None:intergenic 40.0%
CAATGTTCAGTTTCATCTGC+TGG + chr1.3:8078585-8078604 None:intergenic 40.0%
CCTAAACTCAAATGTTCTGG+AGG + chr1.3:8078733-8078752 None:intergenic 40.0%
GAACAGAGTTCTATATGCTG+AGG - chr1.3:8078342-8078361 MS.gene051488:CDS 40.0%
GAGTGTACTAGAAGAGAAAG+TGG - chr1.3:8078643-8078662 MS.gene051488:CDS 40.0%
GGAGAGAAACAATCTGATAC+GGG - chr1.3:8079108-8079127 MS.gene051488:intron 40.0%
GTACATCTACATCAGAAGCT+TGG - chr1.3:8078832-8078851 MS.gene051488:intron 40.0%
TAGAGGACCATCAACATACA+TGG - chr1.3:8079638-8079657 MS.gene051488:CDS 40.0%
TGCTATCGTTGAACAAACTG+TGG - chr1.3:8078870-8078889 MS.gene051488:CDS 40.0%
! CAGTTTTCTCACCTTACCTT+TGG - chr1.3:8079219-8079238 MS.gene051488:CDS 40.0%
! CCTCCAGAACATTTGAGTTT+AGG - chr1.3:8078730-8078749 MS.gene051488:CDS 40.0%
! GGAATCTTTTGAGCACTATG+AGG - chr1.3:8078665-8078684 MS.gene051488:CDS 40.0%
!! CGGCGTTAGTTGGTAATAAT+TGG + chr1.3:8079405-8079424 None:intergenic 40.0%
!! CTACAGAAGAAGTACTCCAT+CGG + chr1.3:8078616-8078635 None:intergenic 40.0%
AGAGTTCTATATGCTGAGGC+TGG - chr1.3:8078346-8078365 MS.gene051488:CDS 45.0%
AGCAGCATTTCTTTGCATGC+CGG + chr1.3:8078532-8078551 None:intergenic 45.0%
AGGACCATCAACATACATGG+TGG - chr1.3:8079641-8079660 MS.gene051488:CDS 45.0%
ATCTGATACGGGTAGGTACA+TGG - chr1.3:8079119-8079138 MS.gene051488:CDS 45.0%
CTCATTGTATCGAGGTGTGT+CGG - chr1.3:8078480-8078499 MS.gene051488:CDS 45.0%
GAGTTCTATATGCTGAGGCT+GGG - chr1.3:8078347-8078366 MS.gene051488:CDS 45.0%
GATTCTACCACGGAAATGTG+GGG + chr1.3:8079383-8079402 None:intergenic 45.0%
GCAGTTCATAACAACCGTCA+AGG - chr1.3:8079934-8079953 MS.gene051488:CDS 45.0%
GGATTCTACCACGGAAATGT+GGG + chr1.3:8079384-8079403 None:intergenic 45.0%
GTTCATAACAACCGTCAAGG+TGG - chr1.3:8079937-8079956 MS.gene051488:CDS 45.0%
TCTGCCACCATGTATGTTGA+TGG + chr1.3:8079648-8079667 None:intergenic 45.0%
TGGATTCTACCACGGAAATG+TGG + chr1.3:8079385-8079404 None:intergenic 45.0%
! GAACATTGATGACACACCGA+TGG - chr1.3:8078597-8078616 MS.gene051488:CDS 45.0%
!! AGTTCCTCTGTCTGATTTGG+AGG - chr1.3:8079728-8079747 MS.gene051488:CDS 45.0%
AGTCGTGCAATAGTCCCTAG+AGG + chr1.3:8078412-8078431 None:intergenic 50.0%
ATATGCACCACTGCTCCCAA+AGG + chr1.3:8079238-8079257 None:intergenic 50.0%
GCAGTGGTGCATATGCTTCA+AGG - chr1.3:8079244-8079263 MS.gene051488:intron 50.0%
TCTATATGCTGAGGCTGGGA+AGG - chr1.3:8078351-8078370 MS.gene051488:intron 50.0%
ATGCTGGAAAGGATGCGGTG+CGG + chr1.3:8079425-8079444 None:intergenic 55.0%
CACCACTGCTCCCAAAGGTA+AGG + chr1.3:8079233-8079252 None:intergenic 55.0%
GCGGCATCGTCATATGCTAG+AGG - chr1.3:8079621-8079640 MS.gene051488:CDS 55.0%
GCTGCAGCCAAGAAACTCCA+TGG - chr1.3:8078549-8078568 MS.gene051488:CDS 55.0%
! CACCTTACCTTTGGGAGCAG+TGG - chr1.3:8079228-8079247 MS.gene051488:CDS 55.0%
CAGTGTGCCCCACATTTCCG+TGG - chr1.3:8079373-8079392 MS.gene051488:CDS 60.0%
CGGAAATGTGGGGCACACTG+AGG + chr1.3:8079373-8079392 None:intergenic 60.0%
GGATGCGGTGCGGCGTTAGT+TGG + chr1.3:8079415-8079434 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 8078268 8079975 8078268 ID=MS.gene051488
chr1.3 mRNA 8078268 8079975 8078268 ID=MS.gene051488.t1;Parent=MS.gene051488
chr1.3 exon 8079334 8079975 8079334 ID=MS.gene051488.t1.exon1;Parent=MS.gene051488.t1
chr1.3 CDS 8079334 8079975 8079334 ID=cds.MS.gene051488.t1;Parent=MS.gene051488.t1
chr1.3 exon 8079110 8079252 8079110 ID=MS.gene051488.t1.exon2;Parent=MS.gene051488.t1
chr1.3 CDS 8079110 8079252 8079110 ID=cds.MS.gene051488.t1;Parent=MS.gene051488.t1
chr1.3 exon 8078849 8079021 8078849 ID=MS.gene051488.t1.exon3;Parent=MS.gene051488.t1
chr1.3 CDS 8078849 8079021 8078849 ID=cds.MS.gene051488.t1;Parent=MS.gene051488.t1
chr1.3 exon 8078475 8078750 8078475 ID=MS.gene051488.t1.exon4;Parent=MS.gene051488.t1
chr1.3 CDS 8078475 8078750 8078475 ID=cds.MS.gene051488.t1;Parent=MS.gene051488.t1
chr1.3 exon 8078268 8078368 8078268 ID=MS.gene051488.t1.exon5;Parent=MS.gene051488.t1
chr1.3 CDS 8078268 8078368 8078268 ID=cds.MS.gene051488.t1;Parent=MS.gene051488.t1
Gene Sequence

>MS.gene051488

ATGGCTGCCAATGAAACTCAATCCGTTGAACAAGTTGACAAAGTTAGCTTGAGAATTATGGTGGACAAAGAAAGGAACAGAGTTCTATATGCTGAGGCTGGGAAGGATTTTGTCGATGTTCTTTTGAGTTTTTTAACATTACCTCTAGGGACTATTGCACGACTCATTTCTCAGAAGTCAAATATTGAAGCAGTGGAATTTGGCAGCATTAGCTCATTGTATCGAGGTGTGTCGGATCTTGATCAACAATATCTATGGTCACCGGCATGCAAAGAAATGCTGCTGCAGCCAAGAAACTCCATGGAATTTTATTTCCAGCAGATGAAACTGAACATTGATGACACACCGATGGAGTACTTCTTCTGTAGTGATTGGGAGTGTACTAGAAGAGAAAGTGGGAATCTTTTGAGCACTATGAGGTATCAAAAATGCTATTGTGGTAGAGTACTGGACAAAGATGTTCCTCCAGAACATTTGAGTTTAGGAAATGGCTTTGTTGAAGAAACTGCTACTTTTATCATTTCCGACGATCTTTTTGTGATGCCTAATGTTTTGGCAACAGTTGTACATCTACATCAGAAGCTTGGAATCGATATGAATGATGCTATCGTTGAACAAACTGTGGAAATAAGCAAGAAAGAGGTATGTTTTCCGGCTTCTATATAATCTGTAATATTGTTTTTTTTTTTTGTCAATTGATTATTTCATCCTTTGCTTTTGTAGGTAGTTGATCTTCTCAAATTATCATTGTTCTCAAACACCCCTTTGACAGATTTAATCTTAAAGAAGAATCAATTTGTTGATAACATTTGCCAAAGCAAAAAATATGAATTCGGAAATGGAGAGAAACAATCTGATACGGGTAGGTACATGGTTGTGAAACTAATGGTAAGAAAATCAACTAGAGTTTCTATTTGCTGAAGCACAAGAAAATTTTCTTGACTTTGTTTTCAGTTTTCTCACCTTACCTTTGGGAGCAGTGGTGCATATGCTTCAAGGAATCTCTTCTTTAAATTGCATTGATAATTTATACAAAAGCATGGCAGAGTTGTGTCCCAGAAGATATTTAATCTCACAGGACCTCAAAGAGAAGTTAACTAAGCCTCAGTGTGCCCCACATTTCCGTGGTAGAATCCAATTATTACCAACTAACGCCGCACCGCATCCTTTCCAGCATATTATTGTCATACATACTATAATAGCGATAGTGAGGTGTATTGTGCAGATCTAACAAAAGAAAAGGCGCGTTTGAAGAATAATACTAGTGTTCCTGATAAGTTTGTACCATTTAAGCTCAAATTGGTTGGTTTTAAGTCCTATGTTTCAGCATCATTTGAAAAATTCGCATGCATAGCGGCATCGTCATATGCTAGAGGACCATCAACATACATGGTGGCAGATGACTTGCGTGTGACTCCAATGTCGTCAATATCTACTATGTCATATCTAAATAGATCTAAAGTTCCTCTGTCTGATTTGGAGGAAATAATCATCAAAATTGGTAAGAAGGAGGTAAGTATTTTCACAAGACTCCAATTGTTATATTATGCCTTGTGATTTATTTTAATTTGCTTACATTATACTTGCGTTTTGTTTACATGTTACAGTGTCTCAGCATACTAAAAGCTTCGATAATCTCAACGTCTTCTTTGACAAATGGTCTCAAGCAGTTCATAACAACCGTCAAGGTGGAGAAATGATTGATTAA
Protein sequence

>MS.gene051488.t1

MAANETQSVEQVDKVSLRIMVDKERNRVLYAEAGKDFVDVLLSFLTLPLGTIARLISQKSNIEAVEFGSISSLYRGVSDLDQQYLWSPACKEMLLQPRNSMEFYFQQMKLNIDDTPMEYFFCSDWECTRRESGNLLSTMRYQKCYCGRVLDKDVPPEHLSLGNGFVEETATFIISDDLFVMPNVLATVVHLHQKLGIDMNDAIVEQTVEISKKEVVDLLKLSLFSNTPLTDLILKKNQFVDNICQSKKYEFGNGEKQSDTGSFLTLPLGAVVHMLQGISSLNCIDNLYKSMAELCPRRYLISQDLKEKLTKPQCAPHFRDLTKEKARLKNNTSVPDKFVPFKLKLVGFKSYVSASFEKFACIAASSYARGPSTYMVADDLRVTPMSSISTMSYLNRSKVPLSDLEEIIIKIVSQHTKSFDNLNVFFDKWSQAVHNNRQGGEMID