AlfalfaGEDB | MS.gene051488

M. sativa cultivar XinJiangDaYe / MS.gene051488

KEGG: -
GO: -
PFAM: PF05056.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051488.t1	AES59109.2	69.3	420	27	3	23	411	9	357	6.10E-147	530.8

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051488.t1	G7I877	69.3	420	27	3	23	411	9	357	4.4e-147	530.8

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene007488	MS.gene051488	PPI
MS.gene037540	MS.gene051488	PPI
MS.gene037550	MS.gene051488	PPI
MS.gene037649	MS.gene051488	PPI
MS.gene051488	MS.gene73259	PPI
MS.gene051488	MS.gene45948	PPI
MS.gene051488	MS.gene84607	PPI
MS.gene051488	MS.gene001109	PPI
MS.gene051488	MS.gene99471	PPI
MS.gene051488	MS.gene037539	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051488.t1	MTR_1g014060	69.286	420	27	3	23	411	9	357	0.0	556
MS.gene051488.t1	MTR_7g066570	52.966	472	142	5	1	411	1	453	7.32e-151	441
MS.gene051488.t1	MTR_7g066570	27.556	225	149	6	14	231	257	474	6.23e-16	80.5
MS.gene051488.t1	MTR_7g012680	54.204	452	132	6	1	411	1	418	4.18e-147	427
MS.gene051488.t1	MTR_7g066260	50.787	445	172	7	2	411	3	435	4.72e-136	400
MS.gene051488.t1	MTR_7g066260	25.463	216	129	5	17	231	272	456	1.31e-12	70.1
MS.gene051488.t1	MTR_7g058710	49.892	461	162	10	6	411	4	450	1.90e-132	390
MS.gene051488.t1	MTR_7g066350	49.886	439	162	10	10	411	5	422	2.47e-124	369
MS.gene051488.t1	MTR_7g066340	48.000	450	165	8	5	411	3	426	2.25e-119	357
MS.gene051488.t1	MTR_1g041315	45.514	457	186	9	1	411	1	440	3.07e-116	349

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene051488.t1	AT3G09110	37.021	235	142	1	14	248	9	237	2.29e-44	158
MS.gene051488.t1	AT5G01120	27.527	465	265	11	15	415	10	466	2.08e-38	145
MS.gene051488.t1	AT3G09140	28.025	471	253	12	14	411	9	466	1.69e-37	143
MS.gene051488.t1	AT3G09120	32.593	270	166	6	13	271	5	269	2.77e-36	136
MS.gene051488.t1	AT5G01150	27.586	464	250	13	14	411	9	452	2.00e-35	137
MS.gene051488.t1	AT5G01130	28.873	426	246	8	14	405	9	411	2.21e-35	136
MS.gene051488.t1	AT3G09140	27.455	499	248	15	14	411	9	494	2.39e-33	132
MS.gene051488.t1	AT5G43240	27.039	466	262	16	15	410	10	467	3.65e-33	131
MS.gene051488.t1	AT5G43240	27.039	466	262	16	15	410	10	467	3.65e-33	131
MS.gene051488.t1	AT5G43240	27.039	466	262	16	15	410	10	467	3.65e-33	131

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Find 75 sgRNAs with CRISPR-Local

Find 105 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACTTTGTCAACTTGTTCAA+CGG	0.522676	1.3:+8079931	None:intergenic
AATATTGAAGCAGTGGAATT+TGG	0.254893	1.3:-8079773	MS.gene051488:CDS
ACAACTGTTGCCAAAACATT+AGG	0.426351	1.3:+8079410	None:intergenic
AGAAACAATCTGATACGGGT+AGG	0.651343	1.3:-8079109	MS.gene051488:intron
AGAGTTCTATATGCTGAGGC+TGG	0.480045	1.3:-8079875	MS.gene051488:CDS
AGCAGCATTTCTTTGCATGC+CGG	0.487860	1.3:+8079692	None:intergenic
AGCATTAGCTCATTGTATCG+AGG	0.679958	1.3:-8079749	MS.gene051488:CDS
AGGACCATCAACATACATGG+TGG	0.750812	1.3:-8078580	MS.gene051488:CDS
AGTACTTCTTCTGTAGTGAT+TGG	0.403067	1.3:-8079601	MS.gene051488:CDS
AGTCGTGCAATAGTCCCTAG+AGG	0.729079	1.3:+8079812	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATTGAAGCAGTGGAATT+TGG	-	chr1.3:8078448-8078467	MS.gene051488:intron	30.0%
AGGTATCAAAAATGCTATTG+TGG	-	chr1.3:8078685-8078704	MS.gene051488:CDS	30.0%
ATACTATAATAGCGATAGTG+AGG	-	chr1.3:8079458-8079477	MS.gene051488:CDS	30.0%
ATAGTAGATATTGACGACAT+TGG	+	chr1.3:8079687-8079706	None:intergenic	30.0%
ATGACAATAATATGCTGGAA+AGG	+	chr1.3:8079436-8079455	None:intergenic	30.0%
CAGAAGATATTTAATCTCAC+AGG	-	chr1.3:8079324-8079343	MS.gene051488:intron	30.0%
CTGTGAGATTAAATATCTTC+TGG	+	chr1.3:8079326-8079345	None:intergenic	30.0%
GTAATAATTGGATTCTACCA+CGG	+	chr1.3:8079393-8079412	None:intergenic	30.0%
TAAAATTCCATGGAGTTTCT+TGG	+	chr1.3:8078559-8078578	None:intergenic	30.0%
TGCAGATCTAACAAAAGAAA+AGG	-	chr1.3:8079488-8079507	MS.gene051488:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.3	gene	8078268	8079975	8078268	ID=MS.gene051488
chr1.3	mRNA	8078268	8079975	8078268	ID=MS.gene051488.t1;Parent=MS.gene051488
chr1.3	exon	8079334	8079975	8079334	ID=MS.gene051488.t1.exon1;Parent=MS.gene051488.t1
chr1.3	CDS	8079334	8079975	8079334	ID=cds.MS.gene051488.t1;Parent=MS.gene051488.t1
chr1.3	exon	8079110	8079252	8079110	ID=MS.gene051488.t1.exon2;Parent=MS.gene051488.t1
chr1.3	CDS	8079110	8079252	8079110	ID=cds.MS.gene051488.t1;Parent=MS.gene051488.t1
chr1.3	exon	8078849	8079021	8078849	ID=MS.gene051488.t1.exon3;Parent=MS.gene051488.t1
chr1.3	CDS	8078849	8079021	8078849	ID=cds.MS.gene051488.t1;Parent=MS.gene051488.t1
chr1.3	exon	8078475	8078750	8078475	ID=MS.gene051488.t1.exon4;Parent=MS.gene051488.t1
chr1.3	CDS	8078475	8078750	8078475	ID=cds.MS.gene051488.t1;Parent=MS.gene051488.t1
chr1.3	exon	8078268	8078368	8078268	ID=MS.gene051488.t1.exon5;Parent=MS.gene051488.t1
chr1.3	CDS	8078268	8078368	8078268	ID=cds.MS.gene051488.t1;Parent=MS.gene051488.t1

Gene Sequence

>MS.gene051488

ATGGCTGCCAATGAAACTCAATCCGTTGAACAAGTTGACAAAGTTAGCTTGAGAATTATGGTGGACAAAGAAAGGAACAGAGTTCTATATGCTGAGGCTGGGAAGGATTTTGTCGATGTTCTTTTGAGTTTTTTAACATTACCTCTAGGGACTATTGCACGACTCATTTCTCAGAAGTCAAATATTGAAGCAGTGGAATTTGGCAGCATTAGCTCATTGTATCGAGGTGTGTCGGATCTTGATCAACAATATCTATGGTCACCGGCATGCAAAGAAATGCTGCTGCAGCCAAGAAACTCCATGGAATTTTATTTCCAGCAGATGAAACTGAACATTGATGACACACCGATGGAGTACTTCTTCTGTAGTGATTGGGAGTGTACTAGAAGAGAAAGTGGGAATCTTTTGAGCACTATGAGGTATCAAAAATGCTATTGTGGTAGAGTACTGGACAAAGATGTTCCTCCAGAACATTTGAGTTTAGGAAATGGCTTTGTTGAAGAAACTGCTACTTTTATCATTTCCGACGATCTTTTTGTGATGCCTAATGTTTTGGCAACAGTTGTACATCTACATCAGAAGCTTGGAATCGATATGAATGATGCTATCGTTGAACAAACTGTGGAAATAAGCAAGAAAGAGGTATGTTTTCCGGCTTCTATATAATCTGTAATATTGTTTTTTTTTTTTGTCAATTGATTATTTCATCCTTTGCTTTTGTAGGTAGTTGATCTTCTCAAATTATCATTGTTCTCAAACACCCCTTTGACAGATTTAATCTTAAAGAAGAATCAATTTGTTGATAACATTTGCCAAAGCAAAAAATATGAATTCGGAAATGGAGAGAAACAATCTGATACGGGTAGGTACATGGTTGTGAAACTAATGGTAAGAAAATCAACTAGAGTTTCTATTTGCTGAAGCACAAGAAAATTTTCTTGACTTTGTTTTCAGTTTTCTCACCTTACCTTTGGGAGCAGTGGTGCATATGCTTCAAGGAATCTCTTCTTTAAATTGCATTGATAATTTATACAAAAGCATGGCAGAGTTGTGTCCCAGAAGATATTTAATCTCACAGGACCTCAAAGAGAAGTTAACTAAGCCTCAGTGTGCCCCACATTTCCGTGGTAGAATCCAATTATTACCAACTAACGCCGCACCGCATCCTTTCCAGCATATTATTGTCATACATACTATAATAGCGATAGTGAGGTGTATTGTGCAGATCTAACAAAAGAAAAGGCGCGTTTGAAGAATAATACTAGTGTTCCTGATAAGTTTGTACCATTTAAGCTCAAATTGGTTGGTTTTAAGTCCTATGTTTCAGCATCATTTGAAAAATTCGCATGCATAGCGGCATCGTCATATGCTAGAGGACCATCAACATACATGGTGGCAGATGACTTGCGTGTGACTCCAATGTCGTCAATATCTACTATGTCATATCTAAATAGATCTAAAGTTCCTCTGTCTGATTTGGAGGAAATAATCATCAAAATTGGTAAGAAGGAGGTAAGTATTTTCACAAGACTCCAATTGTTATATTATGCCTTGTGATTTATTTTAATTTGCTTACATTATACTTGCGTTTTGTTTACATGTTACAGTGTCTCAGCATACTAAAAGCTTCGATAATCTCAACGTCTTCTTTGACAAATGGTCTCAAGCAGTTCATAACAACCGTCAAGGTGGAGAAATGATTGATTAA

Protein sequence

>MS.gene051488.t1

MAANETQSVEQVDKVSLRIMVDKERNRVLYAEAGKDFVDVLLSFLTLPLGTIARLISQKSNIEAVEFGSISSLYRGVSDLDQQYLWSPACKEMLLQPRNSMEFYFQQMKLNIDDTPMEYFFCSDWECTRRESGNLLSTMRYQKCYCGRVLDKDVPPEHLSLGNGFVEETATFIISDDLFVMPNVLATVVHLHQKLGIDMNDAIVEQTVEISKKEVVDLLKLSLFSNTPLTDLILKKNQFVDNICQSKKYEFGNGEKQSDTGSFLTLPLGAVVHMLQGISSLNCIDNLYKSMAELCPRRYLISQDLKEKLTKPQCAPHFRDLTKEKARLKNNTSVPDKFVPFKLKLVGFKSYVSASFEKFACIAASSYARGPSTYMVADDLRVTPMSSISTMSYLNRSKVPLSDLEEIIIKIVSQHTKSFDNLNVFFDKWSQAVHNNRQGGEMID