AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89293

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89293.t1 MTR_7g063880 75.720 486 100 7 2 486 3 471 0.0 697
MS.gene89293.t1 MTR_7g063840 55.876 485 200 11 1 483 1 473 1.73e-162 468
MS.gene89293.t1 MTR_7g062280 53.507 499 208 9 1 483 1 491 6.34e-161 465
MS.gene89293.t1 MTR_7g062300 54.527 486 197 14 1 476 1 472 4.71e-158 457
MS.gene89293.t1 MTR_7g063900 53.722 497 207 12 1 483 1 488 2.80e-156 453
MS.gene89293.t1 MTR_7g063660 52.165 485 215 10 5 483 4 477 2.40e-154 448
MS.gene89293.t1 MTR_7g063920 51.534 489 175 9 2 483 3 436 5.44e-147 427
MS.gene89293.t1 MTR_7g063830 52.049 488 185 12 1 483 1 444 4.15e-146 426
MS.gene89293.t1 MTR_7g063820 51.383 506 201 13 1 483 1 484 1.14e-143 421
MS.gene89293.t1 MTR_3g007740 51.653 484 184 13 3 478 2 443 2.76e-137 403
MS.gene89293.t1 MTR_7g063890 52.016 496 215 11 1 483 19 504 1.49e-134 398
MS.gene89293.t1 MTR_7g063670 50.000 488 189 11 8 483 13 457 3.46e-131 388
MS.gene89293.t1 MTR_7g066570 41.532 496 260 11 3 481 2 484 4.04e-106 327
MS.gene89293.t1 MTR_3g065200 44.469 461 193 15 11 464 4 408 1.35e-98 305
MS.gene89293.t1 MTR_7g066260 39.709 481 250 12 8 477 11 462 8.17e-96 298
MS.gene89293.t1 MTR_7g066410 37.137 517 284 10 1 479 1 514 3.85e-94 295
MS.gene89293.t1 MTR_7g063850 54.808 312 111 8 180 484 1 289 1.28e-91 281
MS.gene89293.t1 MTR_7g058710 37.298 496 281 11 2 483 4 483 1.78e-89 281
MS.gene89293.t1 MTR_7g012680 39.235 497 239 15 2 483 3 451 6.02e-87 274
MS.gene89293.t1 MTR_7g066350 39.184 490 248 13 1 479 1 451 6.80e-87 274
MS.gene89293.t1 MTR_7g066430 37.702 496 276 13 11 483 5 490 1.28e-86 275
MS.gene89293.t1 MTR_7g066340 37.372 487 261 13 1 477 1 453 3.24e-82 263
MS.gene89293.t1 MTR_7g066360 39.381 485 239 12 2 473 3 445 1.72e-80 258
MS.gene89293.t1 MTR_7g066580 35.537 484 257 14 16 480 1 448 7.65e-77 248
MS.gene89293.t1 MTR_7g066580 29.787 235 138 11 11 228 216 440 9.12e-11 64.3
MS.gene89293.t1 MTR_1g041315 36.042 480 244 14 6 461 11 451 3.09e-75 245
MS.gene89293.t1 MTR_7g066480 36.667 480 218 12 11 478 17 422 5.23e-74 240
MS.gene89293.t1 MTR_4g019310 34.369 515 284 18 5 484 3 498 2.54e-73 240
MS.gene89293.t1 MTR_7g066400 36.327 501 235 17 1 479 1 439 9.00e-73 237
MS.gene89293.t1 MTR_7g058700 33.954 483 212 8 22 483 531 927 7.64e-70 239
MS.gene89293.t1 MTR_7g066490 34.855 482 222 10 11 484 17 414 6.17e-68 224
MS.gene89293.t1 MTR_2g029400 34.461 473 216 10 9 467 13 405 2.77e-66 219
MS.gene89293.t1 MTR_7g066290 36.626 486 238 16 1 473 1 429 7.78e-66 219
MS.gene89293.t1 MTR_7g063720 48.193 249 107 7 237 482 2 231 1.38e-64 209
MS.gene89293.t1 MTR_7g063720 28.111 217 134 6 12 227 25 220 9.59e-14 71.2
MS.gene89293.t1 MTR_7g066310 32.696 471 222 14 9 477 6 383 1.10e-63 212
MS.gene89293.t1 MTR_4g017410 32.621 515 287 20 3 483 2 490 1.59e-62 212
MS.gene89293.t1 MTR_4g017440 32.955 528 286 21 3 483 2 508 8.81e-60 204
MS.gene89293.t1 MTR_7g062270 51.892 185 86 3 3 185 2 185 3.08e-57 194
MS.gene89293.t1 MTR_4g017830 32.505 523 297 22 1 483 1 507 1.27e-56 197
MS.gene89293.t1 MTR_4g017470 29.423 520 278 15 4 483 6 476 3.73e-53 186
MS.gene89293.t1 MTR_7g063690 44.014 284 91 7 2 283 3 220 1.10e-52 178
MS.gene89293.t1 MTR_4g019340 31.474 502 278 21 1 465 29 501 1.48e-51 182
MS.gene89293.t1 MTR_4g017610 30.242 496 291 19 6 473 7 475 7.72e-49 174
MS.gene89293.t1 MTR_7g100420 39.117 317 172 8 161 473 94 393 1.04e-47 170
MS.gene89293.t1 MTR_7g100420 74.468 47 12 0 7 53 36 82 1.88e-13 72.4
MS.gene89293.t1 MTR_1g014060 46.341 205 106 3 23 225 13 215 2.31e-45 163
MS.gene89293.t1 MTR_1g014060 34.146 205 110 7 284 483 206 390 1.44e-21 97.1
MS.gene89293.t1 MTR_4g017550 28.778 483 267 22 37 473 18 469 6.35e-38 145
MS.gene89293.t1 MTR_4g017550 29.958 237 123 8 13 226 250 466 6.77e-14 74.3
MS.gene89293.t1 MTR_7g066280 29.356 419 237 13 89 477 1 390 6.69e-37 140
MS.gene89293.t1 MTR_7g066680 32.573 307 165 8 205 473 32 334 6.29e-34 131
MS.gene89293.t1 MTR_8g023240 24.230 487 316 17 4 471 31 483 2.80e-30 124
MS.gene89293.t1 MTR_7g063760 58.904 73 29 1 412 483 1 73 2.29e-22 90.9
MS.gene89293.t1 MTR_8g445860 30.568 229 143 6 11 230 14 235 2.00e-21 93.6
MS.gene89293.t1 MTR_8g445860 25.974 231 149 7 254 470 9 231 1.29e-15 76.6
MS.gene89293.t1 MTR_1g115440 32.806 253 136 9 1 233 1 239 3.87e-21 92.8
MS.gene89293.t1 MTR_7g063870 62.857 70 24 1 156 223 96 165 8.69e-20 89.4
MS.gene89293.t1 MTR_7g063870 62.500 56 21 0 5 60 26 81 6.47e-16 78.2
MS.gene89293.t1 MTR_0150s0010 31.557 244 144 8 1 230 1 235 4.03e-18 84.0
MS.gene89293.t1 MTR_2g067310 36.364 187 75 5 11 193 44 190 2.00e-17 82.0
MS.gene89293.t1 MTR_7g066390 53.947 76 32 1 398 473 46 118 2.40e-15 73.9
MS.gene89293.t1 MTR_1g115455 29.918 244 143 11 1 230 1 230 2.92e-15 75.5
MS.gene89293.t1 MTR_4g019240 35.294 119 64 5 4 112 6 121 5.53e-11 62.0
MS.gene89293.t1 MTR_8g445920 42.308 78 40 1 1 78 1 73 6.19e-11 59.7
MS.gene89293.t1 MTR_8g044890 42.308 78 40 1 1 78 1 73 6.19e-11 59.7
MS.gene89293.t1 MTR_1g115450 34.211 114 65 3 11 119 8 116 7.47e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89293.t1 AT5G01120 31.084 489 298 16 11 473 10 485 2.55e-51 182
MS.gene89293.t1 AT5G01150 29.505 505 312 16 3 483 2 486 1.75e-50 179
MS.gene89293.t1 AT5G01130 29.939 491 292 14 3 483 2 450 1.19e-49 176
MS.gene89293.t1 AT3G09140 30.174 517 301 17 1 479 1 495 3.82e-49 176
MS.gene89293.t1 AT3G09110 32.440 336 213 8 12 343 11 336 1.40e-45 162
MS.gene89293.t1 AT5G01140 28.858 499 294 17 3 483 2 457 5.60e-45 164
MS.gene89293.t1 AT3G09140 28.182 550 297 18 1 479 1 523 1.14e-44 164
MS.gene89293.t1 AT5G43240 28.858 499 300 15 11 473 10 489 5.95e-40 151
MS.gene89293.t1 AT5G43240 28.858 499 300 15 11 473 10 489 5.95e-40 151
MS.gene89293.t1 AT5G43240 28.858 499 300 15 11 473 10 489 5.95e-40 151
MS.gene89293.t1 AT3G09120 36.000 300 167 9 9 293 5 294 7.62e-39 144
MS.gene89293.t1 AT5G37320 26.775 493 316 12 11 479 10 481 2.69e-35 137

Find 96 sgRNAs with CRISPR-Local

Find 122 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACGGTTGAGTAAATGTAAA+AGG 0.208138 7.1:-37713053 None:intergenic
TTGGCAGTTATATTTGTTAA+AGG 0.215984 7.1:-37712074 None:intergenic
AATGAACGTTTATATTATTT+AGG 0.224596 7.1:+37712910 MS.gene89293:CDS
GGATCTACTAAAATGTTCTT+TGG 0.259006 7.1:+37712405 MS.gene89293:CDS
GCATAATAGTATAGCTGATT+TGG 0.270242 7.1:+37712702 MS.gene89293:CDS
AGCGTCCTTGTTTCTCCTTT+GGG 0.274203 7.1:+37712628 MS.gene89293:CDS
AAGCGTCCTTGTTTCTCCTT+TGG 0.285421 7.1:+37712627 MS.gene89293:CDS
CATGATTGTTGTTCCTCAAT+TGG 0.293295 7.1:+37712762 MS.gene89293:CDS
TAACAAGCTTCACAGTGATT+TGG 0.312872 7.1:-37712540 None:intergenic
AGGAAATCCTCAAACGATTC+AGG 0.337107 7.1:-37712054 None:intergenic
GAAGAATCTTGGCCCCTCTA+TGG 0.366680 7.1:-37712485 None:intergenic
AGCTTCTTGACATTGCCTTT+AGG 0.368185 7.1:+37711788 MS.gene89293:CDS
TCCGTGACCACGTAAATTCT+TGG 0.379065 7.1:-37712997 None:intergenic
AGATCTCGATGAAGGGTGTC+TGG 0.390538 7.1:+37711895 MS.gene89293:CDS
TTTGTTTACTAGTAGTTTCA+AGG 0.391289 7.1:-37711708 None:intergenic
TAAATAATATAAACGTTCAT+TGG 0.396430 7.1:-37712908 None:intergenic
AGCATCTGCAAAATCTTTCT+CGG 0.399615 7.1:-37711759 None:intergenic
CTAAATACCTGAATCGTTTG+AGG 0.400581 7.1:+37712047 MS.gene89293:CDS
TCTGCAATGGATTTGTGAAC+AGG 0.410837 7.1:+37712140 MS.gene89293:CDS
CCTCGAAAATACAATATAGA+AGG 0.415147 7.1:+37712859 MS.gene89293:CDS
AAGGAGAAGGTTGTCACTAT+TGG 0.416068 7.1:+37713099 MS.gene89293:CDS
GAAGCTTGTTATAAGAAAAT+CGG 0.424646 7.1:+37712552 MS.gene89293:CDS
AGTAAATGTAAAAGGGTGAT+TGG 0.429390 7.1:-37713045 None:intergenic
AAGGACGCTTAAAAGTTTGT+TGG 0.451417 7.1:-37712614 None:intergenic
AGCATGGGGCCATTCACAAT+TGG 0.453630 7.1:+37711842 MS.gene89293:CDS
CGCTTAAATCAAAATATTGA+CGG 0.454596 7.1:-37712786 None:intergenic
TCAAAGGATTCCCGCACTCT+TGG 0.461553 7.1:-37712093 None:intergenic
TTATTAGGAGGGAGTTCATT+GGG 0.461635 7.1:+37712664 MS.gene89293:CDS
TCACTTGCTAACTGAAGTTA+AGG 0.463987 7.1:+37713321 MS.gene89293:CDS
GGGCCAAGATTCTTCTCTTG+TGG 0.466673 7.1:+37712493 MS.gene89293:CDS
GCAGTGTCTCAGCATATTGA+AGG 0.476267 7.1:+37713258 MS.gene89293:intron
TTTATTAGGAGGGAGTTCAT+TGG 0.477160 7.1:+37712663 MS.gene89293:CDS
AAACCACAAGAGAAGAATCT+TGG 0.480544 7.1:-37712496 None:intergenic
AAATACAATATAGAAGGTAT+TGG 0.488924 7.1:+37712865 MS.gene89293:CDS
TTCAGCAAACAAGACTTTGT+TGG 0.490750 7.1:-37711735 None:intergenic
TAATCTTCTGATGAATTAGC+TGG 0.495568 7.1:-37711950 None:intergenic
TGTCACTGTCACTAAAGAAA+AGG 0.497602 7.1:+37712282 MS.gene89293:CDS
GCGTCCTTGTTTCTCCTTTG+GGG 0.503243 7.1:+37712629 MS.gene89293:CDS
GGCTACGAACGCTTTGTCAT+GGG 0.504848 7.1:+37712973 MS.gene89293:CDS
AAATATTGACGGGCCAATTG+AGG 0.505994 7.1:-37712775 None:intergenic
AACAAATTATTGTATGTGCA+AGG 0.513664 7.1:+37712577 MS.gene89293:CDS
TGGCTACGAACGCTTTGTCA+TGG 0.515142 7.1:+37712972 MS.gene89293:CDS
CGTCCTTGTTTCTCCTTTGG+GGG 0.523770 7.1:+37712630 MS.gene89293:CDS
CAAATTATTGTATGTGCAAG+GGG 0.524177 7.1:+37712579 MS.gene89293:CDS
AGACAGAAAACCATCCATAG+AGG 0.527169 7.1:+37712471 MS.gene89293:CDS
ACGGTTGAGTAAATGTAAAA+GGG 0.528785 7.1:-37713052 None:intergenic
GACAGAAAACCATCCATAGA+GGG 0.528903 7.1:+37712472 MS.gene89293:CDS
ATCATAACTGAACGGTTCAA+AGG 0.529393 7.1:-37712109 None:intergenic
AGAAAAGTTCGTAATATCCA+TGG 0.533127 7.1:-37712209 None:intergenic
TGCGTGGAAGATCTCGATGA+AGG 0.535817 7.1:+37711887 MS.gene89293:CDS
AACTTCTGTTGACGATCTGA+AGG 0.539244 7.1:+37713080 MS.gene89293:CDS
AATATAACTGCCAAGAGTGC+GGG 0.540835 7.1:+37712083 MS.gene89293:CDS
TCAACATCTGCTCTATCAAA+CGG 0.543468 7.1:+37713292 MS.gene89293:CDS
TTCAGACAACCAATTGTGAA+TGG 0.545287 7.1:-37711851 None:intergenic
GACTGTCATGCAAAACTCCA+TGG 0.546370 7.1:+37712192 MS.gene89293:CDS
ACAAATTATTGTATGTGCAA+GGG 0.546473 7.1:+37712578 MS.gene89293:CDS
GGAATTGTACGTTTATTAGG+AGG 0.546902 7.1:+37712652 MS.gene89293:CDS
AAGGAGGAGATATGTGAATG+AGG 0.550943 7.1:+37713340 MS.gene89293:CDS
GGTGTCTGGGAACATTGATA+AGG 0.551603 7.1:+37711909 MS.gene89293:CDS
CGATTCAGGTATTTAGAGCA+AGG 0.553030 7.1:-37712040 None:intergenic
GTCCTTGTTTCTCCTTTGGG+GGG 0.553799 7.1:+37712631 MS.gene89293:CDS
TGTTGACGATCTGAAGGAGA+AGG 0.554611 7.1:+37713086 MS.gene89293:CDS
AATCTTGGCCCCTCTATGGA+TGG 0.554927 7.1:-37712481 None:intergenic
GATCTCGATGAAGGGTGTCT+GGG 0.555440 7.1:+37711896 MS.gene89293:CDS
AGTCTTGCAATAGTTCCTAA+AGG 0.557077 7.1:-37711803 None:intergenic
GCTTAAATCAAAATATTGAC+GGG 0.557539 7.1:-37712785 None:intergenic
TTACGTGGTCACGGATGACC+TGG 0.562305 7.1:+37713005 MS.gene89293:CDS
CGTCAACAGAAGTTTCAAAA+CGG 0.562417 7.1:-37713071 None:intergenic
TCCTACTCAAACAGAGGAGG+GGG 0.571423 7.1:+37711682 MS.gene89293:CDS
GTAGAGAAAGAGTCAAGCAT+GGG 0.573086 7.1:+37711827 MS.gene89293:CDS
TATCAATCACCTACACTGAC+TGG 0.575981 7.1:+37712952 MS.gene89293:CDS
GCTCCTACTCAAACAGAGGA+GGG 0.581267 7.1:+37711680 MS.gene89293:CDS
GAATTGTACGTTTATTAGGA+GGG 0.586316 7.1:+37712653 MS.gene89293:CDS
TGCTCCTACTCAAACAGAGG+AGG 0.591424 7.1:+37711679 MS.gene89293:CDS
CTCCTACTCAAACAGAGGAG+GGG 0.591996 7.1:+37711681 MS.gene89293:CDS
ACCAAGAATTTACGTGGTCA+CGG 0.595998 7.1:+37712996 MS.gene89293:CDS
AAATATAACTGCCAAGAGTG+CGG 0.597419 7.1:+37712082 MS.gene89293:CDS
CTTGCTAACTGAAGTTAAGG+AGG 0.601679 7.1:+37713324 MS.gene89293:CDS
GCGTGGAAGATCTCGATGAA+GGG 0.604382 7.1:+37711888 MS.gene89293:CDS
AAAAGGGTGATTGGAGACAA+AGG 0.609586 7.1:-37713036 None:intergenic
GGCTGCTCCTACTCAAACAG+AGG 0.611746 7.1:+37711676 MS.gene89293:CDS
CTGCAATGGATTTGTGAACA+GGG 0.611920 7.1:+37712141 MS.gene89293:CDS
GAGACAAAGGTGAAATGACC+AGG 0.612367 7.1:-37713023 None:intergenic
CGTTCGTAGCCAGTCAGTGT+AGG 0.615213 7.1:-37712961 None:intergenic
GTGCATAAGAAGTACTCTGT+GGG 0.618082 7.1:-37712010 None:intergenic
CATGGGACCAAGAATTTACG+TGG 0.621275 7.1:+37712990 MS.gene89293:CDS
TGTAGAGAAAGAGTCAAGCA+TGG 0.634257 7.1:+37711826 MS.gene89293:CDS
AATTGTCAGTTAGAAGACAT+CGG 0.634976 7.1:+37712815 MS.gene89293:CDS
TCTGGGAACATTGATAAGGA+AGG 0.638942 7.1:+37711913 MS.gene89293:CDS
GAACTCACTCTATCATTGCG+TGG 0.649566 7.1:+37711871 MS.gene89293:CDS
GTGTCTCAGCATATTGAAGG+CGG 0.679953 7.1:+37713261 MS.gene89293:intron
TGTCACTATTGGCATCAAAG+AGG 0.683718 7.1:+37713110 MS.gene89293:CDS
AGTGCATAAGAAGTACTCTG+TGG 0.683866 7.1:-37712011 None:intergenic
TGCAATGGATTTGTGAACAG+GGG 0.689944 7.1:+37712142 MS.gene89293:CDS
ACAGAAAACCATCCATAGAG+GGG 0.692645 7.1:+37712473 MS.gene89293:CDS
TAGAGAAAGAGTCAAGCATG+GGG 0.732146 7.1:+37711828 MS.gene89293:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATGAACGTTTATATTATTT+AGG + chr7.1:37712910-37712929 MS.gene89293:CDS 15.0%
!! TAAATAATATAAACGTTCAT+TGG - chr7.1:37712911-37712930 None:intergenic 15.0%
!!! AAATACAATATAGAAGGTAT+TGG + chr7.1:37712865-37712884 MS.gene89293:CDS 20.0%
!!! ATTTTTTCATCATAACTGAA+CGG - chr7.1:37712120-37712139 None:intergenic 20.0%
!!! TATTTCAATTTCTTGTTTTC+TGG + chr7.1:37712310-37712329 MS.gene89293:intron 20.0%
!!! TGATTTTGAATGTTTTGTTT+CGG + chr7.1:37712726-37712745 MS.gene89293:CDS 20.0%
!!! TTAAATGACTTGTATTTTAC+AGG + chr7.1:37712378-37712397 MS.gene89293:intron 20.0%
! AACAAATTATTGTATGTGCA+AGG + chr7.1:37712577-37712596 MS.gene89293:CDS 25.0%
! ACAAATTATTGTATGTGCAA+GGG + chr7.1:37712578-37712597 MS.gene89293:CDS 25.0%
! ATGATGAAAAAATTCTGCAA+TGG + chr7.1:37712127-37712146 MS.gene89293:CDS 25.0%
! ATGTTTGGTTGTTTAGTAAT+AGG + chr7.1:37712337-37712356 MS.gene89293:intron 25.0%
! CGCTTAAATCAAAATATTGA+CGG - chr7.1:37712789-37712808 None:intergenic 25.0%
! GCTTAAATCAAAATATTGAC+GGG - chr7.1:37712788-37712807 None:intergenic 25.0%
! TTTGTTTACTAGTAGTTTCA+AGG - chr7.1:37711711-37711730 None:intergenic 25.0%
!! TAAGAGGTAATATAGCTTTA+TGG - chr7.1:37713143-37713162 None:intergenic 25.0%
!! TTGGCAGTTATATTTGTTAA+AGG - chr7.1:37712077-37712096 None:intergenic 25.0%
!!! GAAGCTTGTTATAAGAAAAT+CGG + chr7.1:37712552-37712571 MS.gene89293:CDS 25.0%
!!! TCAATATTTTGATTTAAGCG+AGG + chr7.1:37712789-37712808 MS.gene89293:CDS 25.0%
AACGGTTGAGTAAATGTAAA+AGG - chr7.1:37713056-37713075 None:intergenic 30.0%
AATTGTCAGTTAGAAGACAT+CGG + chr7.1:37712815-37712834 MS.gene89293:CDS 30.0%
ACGGTTGAGTAAATGTAAAA+GGG - chr7.1:37713055-37713074 None:intergenic 30.0%
AGAAAAGTTCGTAATATCCA+TGG - chr7.1:37712212-37712231 None:intergenic 30.0%
AGTAAATGTAAAAGGGTGAT+TGG - chr7.1:37713048-37713067 None:intergenic 30.0%
CAAATTATTGTATGTGCAAG+GGG + chr7.1:37712579-37712598 MS.gene89293:CDS 30.0%
CACAAAAGCAGAAAAATAAG+AGG - chr7.1:37713159-37713178 None:intergenic 30.0%
CCTCGAAAATACAATATAGA+AGG + chr7.1:37712859-37712878 MS.gene89293:CDS 30.0%
GAATTGTACGTTTATTAGGA+GGG + chr7.1:37712653-37712672 MS.gene89293:CDS 30.0%
GCATAATAGTATAGCTGATT+TGG + chr7.1:37712702-37712721 MS.gene89293:CDS 30.0%
GGATCTACTAAAATGTTCTT+TGG + chr7.1:37712405-37712424 MS.gene89293:CDS 30.0%
GGTTGTTTAGTAATAGGTAT+TGG + chr7.1:37712343-37712362 MS.gene89293:intron 30.0%
TAATCTTCTGATGAATTAGC+TGG - chr7.1:37711953-37711972 None:intergenic 30.0%
! CCTTCTATATTGTATTTTCG+AGG - chr7.1:37712862-37712881 None:intergenic 30.0%
! GACTTGTATTTTACAGGTAT+TGG + chr7.1:37712384-37712403 MS.gene89293:intron 30.0%
! GGGTGCAACTTTTATTATTA+AGG + chr7.1:37712162-37712181 MS.gene89293:CDS 30.0%
! GTTTAATGTTAGACTGACTT+AGG + chr7.1:37713192-37713211 MS.gene89293:intron 30.0%
!!! ACTGACAGATTTGTTTTTAG+GGG + chr7.1:37712441-37712460 MS.gene89293:CDS 30.0%
!!! CACTGACAGATTTGTTTTTA+GGG + chr7.1:37712440-37712459 MS.gene89293:CDS 30.0%
!!! TTGTTTTCTGGCTAAATGTT+TGG + chr7.1:37712322-37712341 MS.gene89293:intron 30.0%
AAACCACAAGAGAAGAATCT+TGG - chr7.1:37712499-37712518 None:intergenic 35.0%
AAATATAACTGCCAAGAGTG+CGG + chr7.1:37712082-37712101 MS.gene89293:CDS 35.0%
AAGGACGCTTAAAAGTTTGT+TGG - chr7.1:37712617-37712636 None:intergenic 35.0%
AGCATCTGCAAAATCTTTCT+CGG - chr7.1:37711762-37711781 None:intergenic 35.0%
AGTCTTGCAATAGTTCCTAA+AGG - chr7.1:37711806-37711825 None:intergenic 35.0%
ATCATAACTGAACGGTTCAA+AGG - chr7.1:37712112-37712131 None:intergenic 35.0%
CCTAAAAACAAATCTGTCAG+TGG - chr7.1:37712442-37712461 None:intergenic 35.0%
CGTCAACAGAAGTTTCAAAA+CGG - chr7.1:37713074-37713093 None:intergenic 35.0%
CTAAATACCTGAATCGTTTG+AGG + chr7.1:37712047-37712066 MS.gene89293:CDS 35.0%
GGAATTGTACGTTTATTAGG+AGG + chr7.1:37712652-37712671 MS.gene89293:CDS 35.0%
TAACAAGCTTCACAGTGATT+TGG - chr7.1:37712543-37712562 None:intergenic 35.0%
TCAACATCTGCTCTATCAAA+CGG + chr7.1:37713292-37713311 MS.gene89293:CDS 35.0%
TGTCACTGTCACTAAAGAAA+AGG + chr7.1:37712282-37712301 MS.gene89293:CDS 35.0%
TTATTAGGAGGGAGTTCATT+GGG + chr7.1:37712664-37712683 MS.gene89293:CDS 35.0%
TTCAGACAACCAATTGTGAA+TGG - chr7.1:37711854-37711873 None:intergenic 35.0%
TTCAGCAAACAAGACTTTGT+TGG - chr7.1:37711738-37711757 None:intergenic 35.0%
TTTATTAGGAGGGAGTTCAT+TGG + chr7.1:37712663-37712682 MS.gene89293:CDS 35.0%
! AAAAAGTGCAAGTTCTGTGA+AGG + chr7.1:37712252-37712271 MS.gene89293:CDS 35.0%
! CATGATTGTTGTTCCTCAAT+TGG + chr7.1:37712762-37712781 MS.gene89293:CDS 35.0%
! TCACTTGCTAACTGAAGTTA+AGG + chr7.1:37713321-37713340 MS.gene89293:CDS 35.0%
! TTTTCTCTGCTACAGAACTT+AGG + chr7.1:37712226-37712245 MS.gene89293:CDS 35.0%
!! CCACTGACAGATTTGTTTTT+AGG + chr7.1:37712439-37712458 MS.gene89293:CDS 35.0%
!! TTTTGTTTCGGAAGAAGCAA+GGG + chr7.1:37712738-37712757 MS.gene89293:CDS 35.0%
AAAAGGGTGATTGGAGACAA+AGG - chr7.1:37713039-37713058 None:intergenic 40.0%
AACTTCTGTTGACGATCTGA+AGG + chr7.1:37713080-37713099 MS.gene89293:CDS 40.0%
AAGGAGAAGGTTGTCACTAT+TGG + chr7.1:37713099-37713118 MS.gene89293:CDS 40.0%
ACAGAAAACCATCCATAGAG+GGG + chr7.1:37712473-37712492 MS.gene89293:CDS 40.0%
ACCAAGAATTTACGTGGTCA+CGG + chr7.1:37712996-37713015 MS.gene89293:CDS 40.0%
AGACAGAAAACCATCCATAG+AGG + chr7.1:37712471-37712490 MS.gene89293:CDS 40.0%
AGCTTCTTGACATTGCCTTT+AGG + chr7.1:37711788-37711807 MS.gene89293:CDS 40.0%
AGGAAATCCTCAAACGATTC+AGG - chr7.1:37712057-37712076 None:intergenic 40.0%
CTTGCTAACTGAAGTTAAGG+AGG + chr7.1:37713324-37713343 MS.gene89293:CDS 40.0%
GACAGAAAACCATCCATAGA+GGG + chr7.1:37712472-37712491 MS.gene89293:CDS 40.0%
GGGGGAATTGTACGTTTATT+AGG + chr7.1:37712649-37712668 MS.gene89293:CDS 40.0%
GTAGAGAAAGAGTCAAGCAT+GGG + chr7.1:37711827-37711846 MS.gene89293:CDS 40.0%
TAGAGAAAGAGTCAAGCATG+GGG + chr7.1:37711828-37711847 MS.gene89293:CDS 40.0%
TATCAATCACCTACACTGAC+TGG + chr7.1:37712952-37712971 MS.gene89293:CDS 40.0%
TCTGGGAACATTGATAAGGA+AGG + chr7.1:37711913-37711932 MS.gene89293:CDS 40.0%
TGTAGAGAAAGAGTCAAGCA+TGG + chr7.1:37711826-37711845 MS.gene89293:CDS 40.0%
TGTCACTATTGGCATCAAAG+AGG + chr7.1:37713110-37713129 MS.gene89293:CDS 40.0%
! AAATATTGACGGGCCAATTG+AGG - chr7.1:37712778-37712797 None:intergenic 40.0%
! AATATAACTGCCAAGAGTGC+GGG + chr7.1:37712083-37712102 MS.gene89293:CDS 40.0%
! CGATTCAGGTATTTAGAGCA+AGG - chr7.1:37712043-37712062 None:intergenic 40.0%
! CTGCAATGGATTTGTGAACA+GGG + chr7.1:37712141-37712160 MS.gene89293:CDS 40.0%
! TCTGCAATGGATTTGTGAAC+AGG + chr7.1:37712140-37712159 MS.gene89293:CDS 40.0%
! TGCAATGGATTTGTGAACAG+GGG + chr7.1:37712142-37712161 MS.gene89293:CDS 40.0%
!! AGTGCATAAGAAGTACTCTG+TGG - chr7.1:37712014-37712033 None:intergenic 40.0%
!! GTGCATAAGAAGTACTCTGT+GGG - chr7.1:37712013-37712032 None:intergenic 40.0%
!!! GTTTTGTTTCGGAAGAAGCA+AGG + chr7.1:37712737-37712756 MS.gene89293:CDS 40.0%
AAACGTACAATTCCCCCCAA+AGG - chr7.1:37712646-37712665 None:intergenic 45.0%
CATGGGACCAAGAATTTACG+TGG + chr7.1:37712990-37713009 MS.gene89293:CDS 45.0%
GAACTCACTCTATCATTGCG+TGG + chr7.1:37711871-37711890 MS.gene89293:CDS 45.0%
GACTGTCATGCAAAACTCCA+TGG + chr7.1:37712192-37712211 MS.gene89293:CDS 45.0%
GAGACAAAGGTGAAATGACC+AGG - chr7.1:37713026-37713045 None:intergenic 45.0%
GCAGTGTCTCAGCATATTGA+AGG + chr7.1:37713258-37713277 MS.gene89293:intron 45.0%
GGTGTCTGGGAACATTGATA+AGG + chr7.1:37711909-37711928 MS.gene89293:CDS 45.0%
GTGTCTCAGCATATTGAAGG+CGG + chr7.1:37713261-37713280 MS.gene89293:intron 45.0%
TCCGTGACCACGTAAATTCT+TGG - chr7.1:37713000-37713019 None:intergenic 45.0%
TGTTGACGATCTGAAGGAGA+AGG + chr7.1:37713086-37713105 MS.gene89293:CDS 45.0%
! AAGCGTCCTTGTTTCTCCTT+TGG + chr7.1:37712627-37712646 MS.gene89293:CDS 45.0%
! AGCGTCCTTGTTTCTCCTTT+GGG + chr7.1:37712628-37712647 MS.gene89293:CDS 45.0%
AATCTTGGCCCCTCTATGGA+TGG - chr7.1:37712484-37712503 None:intergenic 50.0%
AGCATGGGGCCATTCACAAT+TGG + chr7.1:37711842-37711861 MS.gene89293:CDS 50.0%
CTCCTACTCAAACAGAGGAG+GGG + chr7.1:37711681-37711700 MS.gene89293:CDS 50.0%
GAAGAATCTTGGCCCCTCTA+TGG - chr7.1:37712488-37712507 None:intergenic 50.0%
GCGTGGAAGATCTCGATGAA+GGG + chr7.1:37711888-37711907 MS.gene89293:CDS 50.0%
GCTCCTACTCAAACAGAGGA+GGG + chr7.1:37711680-37711699 MS.gene89293:CDS 50.0%
GGCTACGAACGCTTTGTCAT+GGG + chr7.1:37712973-37712992 MS.gene89293:CDS 50.0%
GGGCCAAGATTCTTCTCTTG+TGG + chr7.1:37712493-37712512 MS.gene89293:CDS 50.0%
TCAAAGGATTCCCGCACTCT+TGG - chr7.1:37712096-37712115 None:intergenic 50.0%
TCCTACTCAAACAGAGGAGG+GGG + chr7.1:37711682-37711701 MS.gene89293:CDS 50.0%
TGCGTGGAAGATCTCGATGA+AGG + chr7.1:37711887-37711906 MS.gene89293:CDS 50.0%
TGCTCCTACTCAAACAGAGG+AGG + chr7.1:37711679-37711698 MS.gene89293:CDS 50.0%
TGGCTACGAACGCTTTGTCA+TGG + chr7.1:37712972-37712991 MS.gene89293:CDS 50.0%
TTCCCCCCAAAGGAGAAACA+AGG - chr7.1:37712636-37712655 None:intergenic 50.0%
! CGTCCTTGTTTCTCCTTTGG+GGG + chr7.1:37712630-37712649 MS.gene89293:CDS 50.0%
! GCGTCCTTGTTTCTCCTTTG+GGG + chr7.1:37712629-37712648 MS.gene89293:CDS 50.0%
! GTCCTTGTTTCTCCTTTGGG+GGG + chr7.1:37712631-37712650 MS.gene89293:CDS 50.0%
!! AGATCTCGATGAAGGGTGTC+TGG + chr7.1:37711895-37711914 MS.gene89293:CDS 50.0%
!! GATCTCGATGAAGGGTGTCT+GGG + chr7.1:37711896-37711915 MS.gene89293:CDS 50.0%
ACCCCCTCCTCTGTTTGAGT+AGG - chr7.1:37711686-37711705 None:intergenic 55.0%
CGTTCGTAGCCAGTCAGTGT+AGG - chr7.1:37712964-37712983 None:intergenic 55.0%
GGCTGCTCCTACTCAAACAG+AGG + chr7.1:37711676-37711695 MS.gene89293:CDS 55.0%
TTACGTGGTCACGGATGACC+TGG + chr7.1:37713005-37713024 MS.gene89293:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 37711674 37713360 37711674 ID=MS.gene89293
chr7.1 mRNA 37711674 37713360 37711674 ID=MS.gene89293.t1;Parent=MS.gene89293
chr7.1 exon 37711674 37712303 37711674 ID=MS.gene89293.t1.exon1;Parent=MS.gene89293.t1
chr7.1 CDS 37711674 37712303 37711674 ID=cds.MS.gene89293.t1;Parent=MS.gene89293.t1
chr7.1 exon 37712400 37713131 37712400 ID=MS.gene89293.t1.exon2;Parent=MS.gene89293.t1
chr7.1 CDS 37712400 37713131 37712400 ID=cds.MS.gene89293.t1;Parent=MS.gene89293.t1
chr7.1 exon 37713262 37713360 37713262 ID=MS.gene89293.t1.exon3;Parent=MS.gene89293.t1
chr7.1 CDS 37713262 37713360 37713262 ID=cds.MS.gene89293.t1;Parent=MS.gene89293.t1
Gene Sequence

>MS.gene89293

ATGGCTGCTCCTACTCAAACAGAGGAGGGGGTGACCTTGAAACTACTAGTAAACAAAGACACCAACAAAGTCTTGTTTGCTGAAGCCGAGAAAGATTTTGCAGATGCTCTCTTTAGCTTCTTGACATTGCCTTTAGGAACTATTGCAAGACTTGTAGAGAAAGAGTCAAGCATGGGGCCATTCACAATTGGTTGTCTGAACTCACTCTATCATTGCGTGGAAGATCTCGATGAAGGGTGTCTGGGAACATTGATAAGGAAGGAAATGATGTTGCAGCCAGCTAATTCATCAGAAGATTATTGTAGCAGTCTTAAACTTAATATTGATGACACTGAGCCCACAGAGTACTTCTTATGCACTACGTTTCCTTGCTCTAAATACCTGAATCGTTTGAGGATTTCCTTTAACAAATATAACTGCCAAGAGTGCGGGAATCCTTTGAACCGTTCAGTTATGATGAAAAAATTCTGCAATGGATTTGTGAACAGGGGTGCAACTTTTATTATTAAGGATGATTTGACTGTCATGCAAAACTCCATGGATATTACGAACTTTTCTCTGCTACAGAACTTAGGAATAAAAAGTGCAAGTTCTGTGAAGGAAATGACTGTCACTGTCACTAAAGAAAAGGTTTTATATTTCAATTTCTTGTTTTCTGGCTAAATGTTTGGTTGTTTAGTAATAGGTATTGGATCAATTCGTTTTTAAATGACTTGTATTTTACAGGTATTGGATCTACTAAAATGTTCTTTGGTATCAAAGACACCACTGACAGATTTGTTTTTAGGGGAAAATAAAGACAGAAAACCATCCATAGAGGGGCCAAGATTCTTCTCTTGTGGTTTTGAGAACAATAGTGATAGAATCCAAATCACTGTGAAGCTTGTTATAAGAAAATCGGACAACAAATTATTGTATGTGCAAGGGGATTACGATTTTGCCAACAAACTTTTAAGCGTCCTTGTTTCTCCTTTGGGGGGAATTGTACGTTTATTAGGAGGGAGTTCATTGGGAAGCATTGATGCTTTGCATAATAGTATAGCTGATTTGGATGATTTTGAATGTTTTGTTTCGGAAGAAGCAAGGGACATGATTGTTGTTCCTCAATTGGCCCGTCAATATTTTGATTTAAGCGAGGAAAAATTGTCAGTTAGAAGACATCGGAGTTATTACTGTTATTATGAACCTCGAAAATACAATATAGAAGGTATTGGTCACAATCAAGTTTTCATTACCAATGAACGTTTATATTATTTAGGAAATTGTTGTGAATTGTATTATCAATCACCTACACTGACTGGCTACGAACGCTTTGTCATGGGACCAAGAATTTACGTGGTCACGGATGACCTGGTCATTTCACCTTTGTCTCCAATCACCCTTTTACATTTACTCAACCGTTTTGAAACTTCTGTTGACGATCTGAAGGAGAAGGTTGTCACTATTGGCATCAAAGAGGTAATAGACCATAAAGCTATATTACCTCTTATTTTTCTGCTTTTGTGTTTGAACTTCGAAGTTTAATGTTAGACTGACTTAGGAAGTATTTTATAGCAAATGTTCACTTTAGCTTGTTTTCATTTTGCAGTGTCTCAGCATATTGAAGGCGGCTTTAACATCAACATCTGCTCTATCAAACGGTCTTGCTCACTTGCTAACTGAAGTTAAGGAGGAGATATGTGAATGA
Protein sequence

>MS.gene89293.t1

MAAPTQTEEGVTLKLLVNKDTNKVLFAEAEKDFADALFSFLTLPLGTIARLVEKESSMGPFTIGCLNSLYHCVEDLDEGCLGTLIRKEMMLQPANSSEDYCSSLKLNIDDTEPTEYFLCTTFPCSKYLNRLRISFNKYNCQECGNPLNRSVMMKKFCNGFVNRGATFIIKDDLTVMQNSMDITNFSLLQNLGIKSASSVKEMTVTVTKEKVLDLLKCSLVSKTPLTDLFLGENKDRKPSIEGPRFFSCGFENNSDRIQITVKLVIRKSDNKLLYVQGDYDFANKLLSVLVSPLGGIVRLLGGSSLGSIDALHNSIADLDDFECFVSEEARDMIVVPQLARQYFDLSEEKLSVRRHRSYYCYYEPRKYNIEGIGHNQVFITNERLYYLGNCCELYYQSPTLTGYERFVMGPRIYVVTDDLVISPLSPITLLHLLNRFETSVDDLKEKVVTIGIKECLSILKAALTSTSALSNGLAHLLTEVKEEICE