AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89304

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89304.t1 MTR_7g062300 54.661 472 201 8 2 462 3 472 4.06e-170 488
MS.gene89304.t1 MTR_7g062280 52.138 491 208 7 3 468 2 490 4.83e-165 476
MS.gene89304.t1 MTR_7g063900 54.620 487 189 9 3 463 2 482 1.22e-161 467
MS.gene89304.t1 MTR_7g063840 54.132 484 194 12 1 468 1 472 1.02e-160 464
MS.gene89304.t1 MTR_7g063920 52.720 478 173 6 1 468 1 435 3.23e-160 461
MS.gene89304.t1 MTR_7g063880 54.527 486 184 12 1 468 1 467 1.15e-156 453
MS.gene89304.t1 MTR_7g063830 51.380 471 195 9 3 468 2 443 1.58e-153 444
MS.gene89304.t1 MTR_7g063890 55.375 493 173 12 4 463 20 498 2.92e-152 443
MS.gene89304.t1 MTR_7g063820 51.619 494 199 11 3 468 2 483 7.24e-145 424
MS.gene89304.t1 MTR_7g063660 50.104 479 205 11 12 468 10 476 7.98e-144 421
MS.gene89304.t1 MTR_7g063660 29.787 235 134 8 8 228 247 464 1.10e-17 85.9
MS.gene89304.t1 MTR_7g063720 78.862 246 44 2 234 479 1 238 8.81e-135 389
MS.gene89304.t1 MTR_7g063720 30.137 219 126 10 14 229 26 220 2.39e-15 75.9
MS.gene89304.t1 MTR_3g007740 50.106 471 188 10 7 463 5 442 1.13e-134 396
MS.gene89304.t1 MTR_7g063670 48.180 467 206 10 9 465 13 453 3.30e-127 378
MS.gene89304.t1 MTR_7g066570 42.857 483 228 12 12 463 15 480 8.61e-110 337
MS.gene89304.t1 MTR_7g066260 41.983 474 244 11 3 463 7 462 1.66e-104 321
MS.gene89304.t1 MTR_3g065200 42.325 456 195 12 12 450 4 408 6.57e-99 305
MS.gene89304.t1 MTR_7g066430 39.085 481 258 8 12 460 5 482 9.75e-94 293
MS.gene89304.t1 MTR_7g012680 39.149 470 229 9 12 463 15 445 7.81e-93 289
MS.gene89304.t1 MTR_7g058710 38.076 499 258 14 2 468 3 482 1.19e-92 290
MS.gene89304.t1 MTR_7g066410 36.739 509 264 10 9 463 8 512 1.70e-91 288
MS.gene89304.t1 MTR_7g066410 34.091 132 65 4 252 377 6 121 1.36e-11 67.0
MS.gene89304.t1 MTR_7g066480 39.009 464 206 9 12 460 17 418 2.28e-91 285
MS.gene89304.t1 MTR_7g066480 26.222 225 133 9 256 457 16 230 9.82e-11 63.9
MS.gene89304.t1 MTR_7g066350 37.500 488 227 9 12 466 10 452 5.98e-89 280
MS.gene89304.t1 MTR_7g066360 40.717 474 237 10 1 459 1 445 2.11e-88 279
MS.gene89304.t1 MTR_7g066290 39.785 465 220 11 12 463 16 433 9.72e-88 276
MS.gene89304.t1 MTR_7g066340 38.655 476 256 11 1 463 1 453 2.87e-87 276
MS.gene89304.t1 MTR_7g066580 36.268 477 238 11 17 463 1 441 4.46e-84 266
MS.gene89304.t1 MTR_7g066580 28.755 233 140 9 14 230 218 440 1.44e-13 73.2
MS.gene89304.t1 MTR_7g066400 37.866 478 228 12 10 466 11 440 5.97e-84 266
MS.gene89304.t1 MTR_1g041315 35.652 460 249 8 12 447 15 451 4.63e-81 260
MS.gene89304.t1 MTR_1g041315 25.957 235 136 8 256 457 14 243 7.06e-13 70.9
MS.gene89304.t1 MTR_7g066490 37.582 455 211 10 12 460 17 404 1.30e-80 256
MS.gene89304.t1 MTR_4g019310 34.600 500 279 11 5 465 2 492 7.14e-74 241
MS.gene89304.t1 MTR_4g017830 34.411 526 272 19 1 470 1 509 1.09e-70 234
MS.gene89304.t1 MTR_7g058700 34.549 466 205 11 23 463 531 921 1.09e-69 239
MS.gene89304.t1 MTR_7g063850 45.515 301 136 7 182 468 1 287 1.08e-66 216
MS.gene89304.t1 MTR_2g029400 34.416 462 210 13 12 452 15 404 3.17e-66 219
MS.gene89304.t1 MTR_4g019340 34.356 489 246 17 12 451 39 501 7.11e-63 213
MS.gene89304.t1 MTR_4g019340 29.075 227 125 9 9 224 301 502 1.42e-13 73.2
MS.gene89304.t1 MTR_4g017610 32.535 501 272 15 1 460 1 476 3.25e-61 207
MS.gene89304.t1 MTR_4g017410 31.263 499 288 15 4 463 2 484 3.61e-58 200
MS.gene89304.t1 MTR_4g017440 30.814 516 279 14 5 463 8 502 5.48e-56 194
MS.gene89304.t1 MTR_7g100420 40.705 312 158 6 163 459 94 393 2.03e-55 190
MS.gene89304.t1 MTR_7g100420 62.000 50 19 0 5 54 33 82 6.43e-13 70.9
MS.gene89304.t1 MTR_7g063690 43.728 279 87 7 9 283 10 222 8.35e-55 184
MS.gene89304.t1 MTR_4g017470 29.367 521 270 13 1 468 1 476 9.60e-55 191
MS.gene89304.t1 MTR_7g062270 53.723 188 83 4 1 187 1 185 3.58e-53 184
MS.gene89304.t1 MTR_1g014060 44.118 204 107 4 20 220 9 208 1.27e-43 158
MS.gene89304.t1 MTR_1g014060 39.665 179 103 2 286 463 210 384 3.39e-30 121
MS.gene89304.t1 MTR_1g014060 28.216 241 137 9 269 485 13 241 2.07e-13 72.0
MS.gene89304.t1 MTR_7g066280 30.695 417 219 15 90 463 1 390 1.58e-40 150
MS.gene89304.t1 MTR_7g066280 27.755 245 130 10 17 229 155 384 3.35e-15 77.8
MS.gene89304.t1 MTR_7g066680 34.551 301 141 7 212 459 37 334 1.62e-40 149
MS.gene89304.t1 MTR_7g066680 28.846 208 131 8 14 214 89 286 5.16e-15 76.6
MS.gene89304.t1 MTR_8g023240 27.731 476 288 16 8 455 34 481 5.12e-39 149
MS.gene89304.t1 MTR_4g017550 29.436 479 248 18 41 459 21 469 3.49e-38 145
MS.gene89304.t1 MTR_4g017550 27.615 239 137 8 14 233 250 471 3.69e-12 68.6
MS.gene89304.t1 MTR_8g445860 34.959 246 135 6 1 235 7 238 5.27e-34 128
MS.gene89304.t1 MTR_8g445860 27.679 224 134 6 256 456 13 231 1.25e-16 79.7
MS.gene89304.t1 MTR_1g115440 36.400 250 129 8 1 233 1 237 1.26e-33 127
MS.gene89304.t1 MTR_7g066310 33.937 221 115 3 250 463 187 383 1.15e-30 123
MS.gene89304.t1 MTR_7g066310 53.097 113 53 0 12 124 8 120 3.98e-28 116
MS.gene89304.t1 MTR_7g066310 31.628 215 110 8 17 229 198 377 5.97e-17 83.2
MS.gene89304.t1 MTR_0150s0010 35.124 242 139 5 3 233 2 236 2.31e-29 115
MS.gene89304.t1 MTR_0150s0010 30.493 223 132 6 256 456 10 231 1.23e-18 85.5
MS.gene89304.t1 MTR_7g063870 69.737 76 23 0 144 219 82 157 1.67e-25 105
MS.gene89304.t1 MTR_7g063870 73.214 56 15 0 5 60 25 80 1.03e-17 83.2
MS.gene89304.t1 MTR_1g115455 33.607 244 134 10 4 233 2 231 2.76e-23 98.6
MS.gene89304.t1 MTR_2g067310 34.211 190 76 7 12 195 44 190 6.57e-17 80.5
MS.gene89304.t1 MTR_4g019240 42.727 110 53 3 12 113 14 121 1.65e-15 75.1
MS.gene89304.t1 MTR_1g115450 36.923 130 68 4 1 125 1 121 1.76e-15 73.9
MS.gene89304.t1 MTR_7g066390 31.138 167 70 1 297 463 1 122 1.55e-14 71.6
MS.gene89304.t1 MTR_7g063760 46.479 71 37 1 399 468 2 72 1.95e-14 68.6
MS.gene89304.t1 MTR_8g445920 42.857 91 47 1 3 93 2 87 6.65e-14 68.2
MS.gene89304.t1 MTR_8g044890 42.857 91 47 1 3 93 2 87 6.65e-14 68.2
MS.gene89304.t1 MTR_1g115470 42.553 94 47 2 14 105 9 97 4.09e-13 71.6
MS.gene89304.t1 MTR_0150s0030 41.053 95 47 3 1 94 1 87 1.14e-12 67.4
MS.gene89304.t1 MTR_8g445910 42.105 95 46 3 1 94 1 87 7.88e-12 66.2
MS.gene89304.t1 MTR_8g044880 42.105 95 46 3 1 94 1 87 8.56e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89304.t1 AT5G01130 32.285 477 282 12 4 468 2 449 1.08e-61 208
MS.gene89304.t1 AT5G01120 32.158 482 287 10 12 459 10 485 2.70e-59 203
MS.gene89304.t1 AT5G01120 29.752 242 144 10 6 235 262 489 8.69e-14 73.9
MS.gene89304.t1 AT3G09140 30.859 512 295 12 3 469 2 499 1.25e-56 196
MS.gene89304.t1 AT5G01150 31.643 493 295 11 4 466 2 482 2.50e-55 192
MS.gene89304.t1 AT3G09110 37.072 321 179 6 14 321 12 322 1.67e-53 184
MS.gene89304.t1 AT3G09140 29.074 540 296 14 3 469 2 527 1.73e-51 183
MS.gene89304.t1 AT5G43240 31.923 520 293 15 4 479 2 504 6.15e-49 176
MS.gene89304.t1 AT5G43240 31.923 520 293 15 4 479 2 504 6.15e-49 176
MS.gene89304.t1 AT5G43240 31.923 520 293 15 4 479 2 504 6.15e-49 176
MS.gene89304.t1 AT5G01140 28.776 490 303 13 1 473 1 461 4.27e-48 172
MS.gene89304.t1 AT3G09120 37.539 317 170 7 12 310 7 313 9.09e-47 165
MS.gene89304.t1 AT5G37320 26.984 504 314 13 1 469 1 485 8.91e-34 133
MS.gene89304.t1 AT5G43240 28.940 349 204 10 162 479 25 360 4.31e-17 83.2

Find 78 sgRNAs with CRISPR-Local

Find 100 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGGATCAACAATTCTATTCT+TGG 0.237094 7.1:-37822618 None:intergenic
CTCATTTATCCCCACAGTTT+GGG 0.266381 7.1:+37822639 MS.gene89304:CDS
CATTCAAAGGAGTTTGAAAA+TGG 0.274574 7.1:-37822895 None:intergenic
CCTCATTTATCCCCACAGTT+TGG 0.299678 7.1:+37822638 MS.gene89304:CDS
ATAAAACTTTGTTGCTCTCT+TGG 0.301043 7.1:-37821586 None:intergenic
CTTGTAATATCCATTGAGTT+TGG 0.311703 7.1:-37822064 None:intergenic
GTACCATAGCATACTTGATT+TGG 0.323415 7.1:+37822565 MS.gene89304:CDS
GGAGGAGTTGTACGTATGTT+TGG 0.323513 7.1:+37822509 MS.gene89304:CDS
TTTGGTATGCTCCAGAGTTT+TGG 0.326522 7.1:+37822088 MS.gene89304:CDS
GTTTGGAGGAAACTGTTCTT+TGG 0.327675 7.1:+37822526 MS.gene89304:CDS
AACTCCTTTGAATGACTTGA+AGG 0.334806 7.1:+37822904 MS.gene89304:CDS
GTTTCTTACATGTCTGTTGA+TGG 0.337172 7.1:+37822785 MS.gene89304:CDS
TCAATGGATATTACAAGCTT+TGG 0.378411 7.1:+37822070 MS.gene89304:CDS
AGCTTCTTAACATTACCATT+TGG 0.402316 7.1:+37821647 MS.gene89304:CDS
TTTGAATGACTTGAAGGAAA+AGG 0.415391 7.1:+37822910 MS.gene89304:CDS
AATACACTTGTAATACTTTG+TGG 0.418975 7.1:-37821870 None:intergenic
GGATCTTCTGAAGTGCTCAT+TGG 0.422757 7.1:+37822277 MS.gene89304:CDS
ATACACTTGTAATACTTTGT+GGG 0.426799 7.1:-37821869 None:intergenic
TTTGGAGGAAACTGTTCTTT+GGG 0.428063 7.1:+37822527 MS.gene89304:CDS
TACAAATGGTCTTGGACACT+TGG 0.433960 7.1:+37823108 MS.gene89304:CDS
CAACCATTGGATTGTCATCA+AGG 0.434484 7.1:+37822342 MS.gene89304:CDS
ATGAAATGTAAAACTGAAGT+TGG 0.439564 7.1:-37822869 None:intergenic
GCAGTGTTTAAGCATATTGA+AGG 0.439867 7.1:+37823060 MS.gene89304:intron
CCGAACCAACAGTCGTCATC+AGG 0.444536 7.1:-37821947 None:intergenic
CTATGTTGTCGCAGATGACT+TGG 0.450397 7.1:+37822829 MS.gene89304:CDS
TGCAATGGATTTGTTAAAGA+TGG 0.450449 7.1:+37822004 MS.gene89304:CDS
TGTCAATGTCACAAAGGAAA+AGG 0.458541 7.1:+37822144 MS.gene89304:CDS
TGGTCCACCACAAGTTTCAA+TGG 0.464148 7.1:-37821566 None:intergenic
ACAATGGGATCTGTTACAAT+TGG 0.470466 7.1:+37821701 MS.gene89304:CDS
CTTGATGACAATCCAATGGT+TGG 0.475321 7.1:-37822341 None:intergenic
CATTCAATTCACAATTAAGC+TGG 0.492693 7.1:+37822397 MS.gene89304:CDS
AAGAGTCATGCCAAACTCAA+TGG 0.497378 7.1:+37822054 MS.gene89304:CDS
GGGAAAATATTGTATGCTCA+AGG 0.502524 7.1:+37822437 MS.gene89304:CDS
GCAGCTCTTACAAATGGTCT+TGG 0.502895 7.1:+37823100 MS.gene89304:CDS
AAGGAAAAGGTTATCAACAT+TGG 0.509621 7.1:+37822923 MS.gene89304:CDS
TTTATTTGCTGAAGTAGGAA+AGG 0.510908 7.1:+37821604 MS.gene89304:CDS
CCTGATGACGACTGTTGGTT+CGG 0.515291 7.1:+37821947 MS.gene89304:CDS
GCAACCACATAACTCCTTCG+AGG 0.515369 7.1:+37821805 MS.gene89304:CDS
AAAGCACACTTGTTCTGTAA+AGG 0.516480 7.1:+37822114 MS.gene89304:CDS
TGTGCTTTATTCCAAAACTC+TGG 0.523565 7.1:-37822099 None:intergenic
TGTCAAGATCTGCCACACTT+TGG 0.525138 7.1:-37821742 None:intergenic
GAAGTACGTCTGCAAAATCA+TGG 0.528021 7.1:-37822463 None:intergenic
CATCCAAATCAAGTATGCTA+TGG 0.528391 7.1:-37822568 None:intergenic
TTAAGAATGAAACCAACCAT+TGG 0.528522 7.1:+37822329 MS.gene89304:CDS
TATCAACATTGGTCTTAATG+AGG 0.532734 7.1:+37822934 MS.gene89304:CDS
TCAACAGCAGCTCTTACAAA+TGG 0.533519 7.1:+37823094 MS.gene89304:CDS
CTGAAAACACAATTCTGCAA+TGG 0.539588 7.1:+37821989 MS.gene89304:CDS
ATACGTACAACTCCTCCTAA+AGG 0.546564 7.1:-37822503 None:intergenic
CAAGTCATCTGCGACAACAT+AGG 0.549623 7.1:-37822828 None:intergenic
GGAGTTGTACGTATGTTTGG+AGG 0.559638 7.1:+37822512 MS.gene89304:CDS
GATTCGTCAGCCCAAACTGT+GGG 0.565076 7.1:-37822649 None:intergenic
CTGGTTATAAGAAAATCAGA+TGG 0.573954 7.1:+37822416 MS.gene89304:CDS
ATTTGTAAGAGCTGCTGTTG+AGG 0.575365 7.1:-37823092 None:intergenic
AGTCGTGTGATGGTTCCAAA+TGG 0.578063 7.1:-37821662 None:intergenic
AAAACATCAACGAAATCGCA+TGG 0.589010 7.1:-37821905 None:intergenic
GGAAAATATTGTATGCTCAA+GGG 0.589717 7.1:+37822438 MS.gene89304:CDS
GATTGTATGAAAGAAGAGAA+AGG 0.592818 7.1:+37821767 MS.gene89304:CDS
CTTGGTGATTGAAGAACAAG+AGG 0.603250 7.1:+37823126 MS.gene89304:CDS
CCAAACTGTGGGGATAAATG+AGG 0.616498 7.1:-37822638 None:intergenic
TCTGTTGATGGTTATGTGAA+GGG 0.619292 7.1:+37822797 MS.gene89304:CDS
AATCCTTGATGACAATCCAA+TGG 0.620913 7.1:-37822345 None:intergenic
TTCTAGTTCTACTCAATCAG+AGG 0.624316 7.1:+37821535 MS.gene89304:CDS
TTGTGATGTTGAAAACACTA+AGG 0.630044 7.1:+37822373 MS.gene89304:CDS
GGTGATTGAAGAACAAGAGG+GGG 0.630222 7.1:+37823129 MS.gene89304:CDS
TAATCCTCGAAGGAGTTATG+TGG 0.632148 7.1:-37821809 None:intergenic
AATGATTGTCAATGTCACAA+AGG 0.636541 7.1:+37822138 MS.gene89304:CDS
GTCTGTTGATGGTTATGTGA+AGG 0.640253 7.1:+37822796 MS.gene89304:CDS
TGGTTATAAGAAAATCAGAT+GGG 0.648613 7.1:+37822417 MS.gene89304:CDS
TTGGTGATTGAAGAACAAGA+GGG 0.649123 7.1:+37823127 MS.gene89304:CDS
AATGTCCTGATGACGACTGT+TGG 0.660850 7.1:+37821942 MS.gene89304:CDS
AGAGCTGCAATAATCCTCGA+AGG 0.663808 7.1:-37821819 None:intergenic
TGATTCGTCAGCCCAAACTG+TGG 0.666587 7.1:-37822650 None:intergenic
TAACAATCTCTACCAAAGTG+TGG 0.667124 7.1:+37821730 MS.gene89304:CDS
GTATGTGCCATTGAAACTTG+TGG 0.675302 7.1:+37821559 MS.gene89304:CDS
TGGTGATTGAAGAACAAGAG+GGG 0.696303 7.1:+37823128 MS.gene89304:CDS
GTGATTGAAGAACAAGAGGG+GGG 0.705515 7.1:+37823130 MS.gene89304:CDS
ATTCGTCAGCCCAAACTGTG+GGG 0.710409 7.1:-37822648 None:intergenic
TGTGCCATTGAAACTTGTGG+TGG 0.711857 7.1:+37821562 MS.gene89304:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAACAAGTTAAT+AGG - chr7.1:37823038-37823057 None:intergenic 10.0%
!! TGTTTAATATTATTCTATAT+AGG + chr7.1:37822250-37822269 MS.gene89304:intron 10.0%
!! ATTAAACAAATCAAACAAAA+AGG - chr7.1:37822238-37822257 None:intergenic 15.0%
!! ATATTATTCTATATAGGTAC+TGG + chr7.1:37822256-37822275 MS.gene89304:intron 20.0%
! AATACACTTGTAATACTTTG+TGG - chr7.1:37821873-37821892 None:intergenic 25.0%
! ATACACTTGTAATACTTTGT+GGG - chr7.1:37821872-37821891 None:intergenic 25.0%
! ATGAAATGTAAAACTGAAGT+TGG - chr7.1:37822872-37822891 None:intergenic 25.0%
! TGGTTATAAGAAAATCAGAT+GGG + chr7.1:37822417-37822436 MS.gene89304:CDS 25.0%
!! ATCTATCTTTTCACAAGTTA+TGG - chr7.1:37822729-37822748 None:intergenic 25.0%
!!! AAAGTTTTATTTGCTGAAGT+AGG + chr7.1:37821599-37821618 MS.gene89304:CDS 25.0%
AAGGAAAAGGTTATCAACAT+TGG + chr7.1:37822923-37822942 MS.gene89304:CDS 30.0%
AATGATTGTCAATGTCACAA+AGG + chr7.1:37822138-37822157 MS.gene89304:CDS 30.0%
AGCTTCTTAACATTACCATT+TGG + chr7.1:37821647-37821666 MS.gene89304:CDS 30.0%
AGGATCAACAATTCTATTCT+TGG - chr7.1:37822621-37822640 None:intergenic 30.0%
ATAAAACTTTGTTGCTCTCT+TGG - chr7.1:37821589-37821608 None:intergenic 30.0%
CATTCAAAGGAGTTTGAAAA+TGG - chr7.1:37822898-37822917 None:intergenic 30.0%
CATTCAATTCACAATTAAGC+TGG + chr7.1:37822397-37822416 MS.gene89304:CDS 30.0%
CTGGTTATAAGAAAATCAGA+TGG + chr7.1:37822416-37822435 MS.gene89304:CDS 30.0%
CTTCAAAAAGAGTCAACAAT+GGG + chr7.1:37821686-37821705 MS.gene89304:CDS 30.0%
CTTGTAATATCCATTGAGTT+TGG - chr7.1:37822067-37822086 None:intergenic 30.0%
GATTGTATGAAAGAAGAGAA+AGG + chr7.1:37821767-37821786 MS.gene89304:CDS 30.0%
GGAAAATATTGTATGCTCAA+GGG + chr7.1:37822438-37822457 MS.gene89304:CDS 30.0%
TCAATGGATATTACAAGCTT+TGG + chr7.1:37822070-37822089 MS.gene89304:CDS 30.0%
TCTTCAAAAAGAGTCAACAA+TGG + chr7.1:37821685-37821704 MS.gene89304:CDS 30.0%
TTAAGAATGAAACCAACCAT+TGG + chr7.1:37822329-37822348 MS.gene89304:CDS 30.0%
TTGTGATGTTGAAAACACTA+AGG + chr7.1:37822373-37822392 MS.gene89304:CDS 30.0%
TTTGAAAATCGAGTCTATAC+AGG - chr7.1:37822975-37822994 None:intergenic 30.0%
TTTGAATGACTTGAAGGAAA+AGG + chr7.1:37822910-37822929 MS.gene89304:CDS 30.0%
! AGTTTTCTGACTTTTCCTTT+AGG + chr7.1:37822488-37822507 MS.gene89304:CDS 30.0%
! ATCAGATTTTTCCAATTCGT+TGG + chr7.1:37822669-37822688 MS.gene89304:CDS 30.0%
! TTTATTTGCTGAAGTAGGAA+AGG + chr7.1:37821604-37821623 MS.gene89304:CDS 30.0%
! TTTTCCTTCAAGTCATTCAA+AGG - chr7.1:37822911-37822930 None:intergenic 30.0%
!! TATCAACATTGGTCTTAATG+AGG + chr7.1:37822934-37822953 MS.gene89304:CDS 30.0%
!! TGCAATGGATTTGTTAAAGA+TGG + chr7.1:37822004-37822023 MS.gene89304:CDS 30.0%
!!! CGTGAAAAGTTTTATTGTCA+TGG + chr7.1:37822695-37822714 MS.gene89304:CDS 30.0%
AAAACATCAACGAAATCGCA+TGG - chr7.1:37821908-37821927 None:intergenic 35.0%
AAAGCACACTTGTTCTGTAA+AGG + chr7.1:37822114-37822133 MS.gene89304:CDS 35.0%
AACTCCTTTGAATGACTTGA+AGG + chr7.1:37822904-37822923 MS.gene89304:CDS 35.0%
ACAATGGGATCTGTTACAAT+TGG + chr7.1:37821701-37821720 MS.gene89304:CDS 35.0%
CATCCAAATCAAGTATGCTA+TGG - chr7.1:37822571-37822590 None:intergenic 35.0%
CTGAAAACACAATTCTGCAA+TGG + chr7.1:37821989-37822008 MS.gene89304:CDS 35.0%
GCAGTGTTTAAGCATATTGA+AGG + chr7.1:37823060-37823079 MS.gene89304:intron 35.0%
GGGAAAATATTGTATGCTCA+AGG + chr7.1:37822437-37822456 MS.gene89304:CDS 35.0%
GTACCATAGCATACTTGATT+TGG + chr7.1:37822565-37822584 MS.gene89304:CDS 35.0%
GTTTCTTACATGTCTGTTGA+TGG + chr7.1:37822785-37822804 MS.gene89304:CDS 35.0%
TAACAATCTCTACCAAAGTG+TGG + chr7.1:37821730-37821749 MS.gene89304:CDS 35.0%
TGTCAATGTCACAAAGGAAA+AGG + chr7.1:37822144-37822163 MS.gene89304:CDS 35.0%
TTTGGAGGAAACTGTTCTTT+GGG + chr7.1:37822527-37822546 MS.gene89304:CDS 35.0%
! AATCCTTGATGACAATCCAA+TGG - chr7.1:37822348-37822367 None:intergenic 35.0%
! TAGGAGCAATAGTTTGCAAT+AGG - chr7.1:37823019-37823038 None:intergenic 35.0%
! TGTGCTTTATTCCAAAACTC+TGG - chr7.1:37822102-37822121 None:intergenic 35.0%
! TGTTTTCAGAGGAACTACTT+GGG - chr7.1:37821978-37821997 None:intergenic 35.0%
! TTGCAGAATTGTGTTTTCAG+AGG - chr7.1:37821989-37822008 None:intergenic 35.0%
! TTGGTGATTGAAGAACAAGA+GGG + chr7.1:37823127-37823146 MS.gene89304:CDS 35.0%
! TTTCTGACTTTTCCTTTAGG+AGG + chr7.1:37822491-37822510 MS.gene89304:CDS 35.0%
!! TCTGTTGATGGTTATGTGAA+GGG + chr7.1:37822797-37822816 MS.gene89304:CDS 35.0%
!! TTCTAGTTCTACTCAATCAG+AGG + chr7.1:37821535-37821554 MS.gene89304:CDS 35.0%
!! TTTTTGAAGAAGTCGTGTGA+TGG - chr7.1:37821675-37821694 None:intergenic 35.0%
AAGAGTCATGCCAAACTCAA+TGG + chr7.1:37822054-37822073 MS.gene89304:CDS 40.0%
ATACGTACAACTCCTCCTAA+AGG - chr7.1:37822506-37822525 None:intergenic 40.0%
ATTTGTAAGAGCTGCTGTTG+AGG - chr7.1:37823095-37823114 None:intergenic 40.0%
CAACCATTGGATTGTCATCA+AGG + chr7.1:37822342-37822361 MS.gene89304:CDS 40.0%
CTCATTTATCCCCACAGTTT+GGG + chr7.1:37822639-37822658 MS.gene89304:CDS 40.0%
GAAGTACGTCTGCAAAATCA+TGG - chr7.1:37822466-37822485 None:intergenic 40.0%
GTTTGGAGGAAACTGTTCTT+TGG + chr7.1:37822526-37822545 MS.gene89304:CDS 40.0%
TAATCCTCGAAGGAGTTATG+TGG - chr7.1:37821812-37821831 None:intergenic 40.0%
TCAACAGCAGCTCTTACAAA+TGG + chr7.1:37823094-37823113 MS.gene89304:CDS 40.0%
TGGTGATTGAAGAACAAGAG+GGG + chr7.1:37823128-37823147 MS.gene89304:CDS 40.0%
! CTTGATGACAATCCAATGGT+TGG - chr7.1:37822344-37822363 None:intergenic 40.0%
! CTTGGTGATTGAAGAACAAG+AGG + chr7.1:37823126-37823145 MS.gene89304:CDS 40.0%
! GTATGTGCCATTGAAACTTG+TGG + chr7.1:37821559-37821578 MS.gene89304:CDS 40.0%
! GTGTTTTCAGAGGAACTACT+TGG - chr7.1:37821979-37821998 None:intergenic 40.0%
! TACAAATGGTCTTGGACACT+TGG + chr7.1:37823108-37823127 MS.gene89304:CDS 40.0%
! TCTGCGACAACATAGGTTTT+TGG - chr7.1:37822824-37822843 None:intergenic 40.0%
! TTTGGTATGCTCCAGAGTTT+TGG + chr7.1:37822088-37822107 MS.gene89304:CDS 40.0%
!! GTCTGTTGATGGTTATGTGA+AGG + chr7.1:37822796-37822815 MS.gene89304:CDS 40.0%
AGAGCTGCAATAATCCTCGA+AGG - chr7.1:37821822-37821841 None:intergenic 45.0%
AGTCGTGTGATGGTTCCAAA+TGG - chr7.1:37821665-37821684 None:intergenic 45.0%
CAAGTCATCTGCGACAACAT+AGG - chr7.1:37822831-37822850 None:intergenic 45.0%
CCAAACTGTGGGGATAAATG+AGG - chr7.1:37822641-37822660 None:intergenic 45.0%
CCTCATTTATCCCCACAGTT+TGG + chr7.1:37822638-37822657 MS.gene89304:CDS 45.0%
CTATGTTGTCGCAGATGACT+TGG + chr7.1:37822829-37822848 MS.gene89304:CDS 45.0%
GCAGCTCTTACAAATGGTCT+TGG + chr7.1:37823100-37823119 MS.gene89304:CDS 45.0%
GGAGGAGTTGTACGTATGTT+TGG + chr7.1:37822509-37822528 MS.gene89304:CDS 45.0%
GGAGTTGTACGTATGTTTGG+AGG + chr7.1:37822512-37822531 MS.gene89304:CDS 45.0%
GGTGATTGAAGAACAAGAGG+GGG + chr7.1:37823129-37823148 MS.gene89304:CDS 45.0%
GTGATTGAAGAACAAGAGGG+GGG + chr7.1:37823130-37823149 MS.gene89304:CDS 45.0%
TGGTCCACCACAAGTTTCAA+TGG - chr7.1:37821569-37821588 None:intergenic 45.0%
TGTCAAGATCTGCCACACTT+TGG - chr7.1:37821745-37821764 None:intergenic 45.0%
! AATGTCCTGATGACGACTGT+TGG + chr7.1:37821942-37821961 MS.gene89304:CDS 45.0%
! GTCGTCATCAGGACATTTTG+TGG - chr7.1:37821939-37821958 None:intergenic 45.0%
! TGTGCCATTGAAACTTGTGG+TGG + chr7.1:37821562-37821581 MS.gene89304:CDS 45.0%
! TTTTCACGTCGCCAACGAAT+TGG - chr7.1:37822683-37822702 None:intergenic 45.0%
!! GGATCTTCTGAAGTGCTCAT+TGG + chr7.1:37822277-37822296 MS.gene89304:CDS 45.0%
ATTCGTCAGCCCAAACTGTG+GGG - chr7.1:37822651-37822670 None:intergenic 50.0%
GATTCGTCAGCCCAAACTGT+GGG - chr7.1:37822652-37822671 None:intergenic 50.0%
GCAACCACATAACTCCTTCG+AGG + chr7.1:37821805-37821824 MS.gene89304:CDS 50.0%
TGATTCGTCAGCCCAAACTG+TGG - chr7.1:37822653-37822672 None:intergenic 50.0%
! CCTGATGACGACTGTTGGTT+CGG + chr7.1:37821947-37821966 MS.gene89304:CDS 50.0%
CCGAACCAACAGTCGTCATC+AGG - chr7.1:37821950-37821969 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 37821530 37823204 37821530 ID=MS.gene89304
chr7.1 mRNA 37821530 37823204 37821530 ID=MS.gene89304.t1;Parent=MS.gene89304
chr7.1 exon 37821530 37822165 37821530 ID=MS.gene89304.t1.exon1;Parent=MS.gene89304.t1
chr7.1 CDS 37821530 37822165 37821530 ID=cds.MS.gene89304.t1;Parent=MS.gene89304.t1
chr7.1 exon 37822272 37822955 37822272 ID=MS.gene89304.t1.exon2;Parent=MS.gene89304.t1
chr7.1 CDS 37822272 37822955 37822272 ID=cds.MS.gene89304.t1;Parent=MS.gene89304.t1
chr7.1 exon 37823064 37823204 37823064 ID=MS.gene89304.t1.exon3;Parent=MS.gene89304.t1
chr7.1 CDS 37823064 37823204 37823064 ID=cds.MS.gene89304.t1;Parent=MS.gene89304.t1
Gene Sequence

>MS.gene89304

ATGACTTCTAGTTCTACTCAATCAGAGGTGTATGTGCCATTGAAACTTGTGGTGGACCAAGAGAGCAACAAAGTTTTATTTGCTGAAGTAGGAAAGGACTTTGTTGATGTTCTATTTAGCTTCTTAACATTACCATTTGGAACCATCACACGACTTCTTCAAAAAGAGTCAACAATGGGATCTGTTACAATTGGTTGTATTAACAATCTCTACCAAAGTGTGGCAGATCTTGACAAAGATTGTATGAAAGAAGAGAAAGGCAAAGAAATGTTATTGCAACCACATAACTCCTTCGAGGATTATTGCAGCTCTCTTAAACTAAACATTGATGACACAGAGCCCACAAAGTATTACAAGTGTATTGAGAGAGTTTTTCCATGCGATTTCGTTGATGTTTTGAGCACTTCCACAAAATGTCCTGATGACGACTGTTGGTTCGGAAAAACCCAAGTAGTTCCTCTGAAAACACAATTCTGCAATGGATTTGTTAAAGATGGTGCAACTTTTGTTATTACTGATGATCTAAGAGTCATGCCAAACTCAATGGATATTACAAGCTTTGGTATGCTCCAGAGTTTTGGAATAAAGCACACTTGTTCTGTAAAGGAAATGATTGTCAATGTCACAAAGGAAAAGGTTTTCTATTTACTATTTCGTGCTCTTTATTTATTTCTAAATGCAGCACTTCTATTTTCTTCAATATTTCCTTTTTGTTTGATTTGTTTAATATTATTCTATATAGGTACTGGATCTTCTGAAGTGCTCATTGGTTTCTAAGTCAACTTTGACTGATTTGTTTTTAAGAATGAAACCAACCATTGGATTGTCATCAAGGATTTTCTGTTGTGATGTTGAAAACACTAAGGACATTCAATTCACAATTAAGCTGGTTATAAGAAAATCAGATGGGAAAATATTGTATGCTCAAGGGAGCCATGATTTTGCAGACGTACTTCTAAGTTTTCTGACTTTTCCTTTAGGAGGAGTTGTACGTATGTTTGGAGGAAACTGTTCTTTGGGCAGTATTGATGCTTTGTACCATAGCATACTTGATTTGGATGAAAACAAATATTTTGTGACAAAAGAAGCCAAGAATAGAATTGTTGATCCTCATTTATCCCCACAGTTTGGGCTGACGAATCAGATTTTTCCAATTCGTTGGCGACGTGAAAAGTTTTATTGTCATGGCAATTCTTCCATAACTTGTGAAAAGATAGATTATTTTGATTGTACTGATGAAACAGTTAATAATATCGTTTCTTACATGTCTGTTGATGGTTATGTGAAGGGACCAAAAACCTATGTTGTCGCAGATGACTTGGTTTTAAAAGAGTCGTCTCCAACTTCAGTTTTACATTTCATCAACCATTTTCAAACTCCTTTGAATGACTTGAAGGAAAAGGTTATCAACATTGGTCTTAATGAGGTGTGTGATAGTAATGCCTGTATAGACTCGATTTTCAAATTTTTGTGCTTCTGTGTAATGCCTATTGCAAACTATTGCTCCTATTAACTTGTTATTTTTTTTGTGCAGTGTTTAAGCATATTGAAGGCATCTTTGACCTCAACAGCAGCTCTTACAAATGGTCTTGGACACTTGGTGATTGAAGAACAAGAGGGGGGATCTGTCAACTTACAAAGATCTGTTAATAAAGATCTGTTTCATTTAATTTAA
Protein sequence

>MS.gene89304.t1

MTSSSTQSEVYVPLKLVVDQESNKVLFAEVGKDFVDVLFSFLTLPFGTITRLLQKESTMGSVTIGCINNLYQSVADLDKDCMKEEKGKEMLLQPHNSFEDYCSSLKLNIDDTEPTKYYKCIERVFPCDFVDVLSTSTKCPDDDCWFGKTQVVPLKTQFCNGFVKDGATFVITDDLRVMPNSMDITSFGMLQSFGIKHTCSVKEMIVNVTKEKVLDLLKCSLVSKSTLTDLFLRMKPTIGLSSRIFCCDVENTKDIQFTIKLVIRKSDGKILYAQGSHDFADVLLSFLTFPLGGVVRMFGGNCSLGSIDALYHSILDLDENKYFVTKEAKNRIVDPHLSPQFGLTNQIFPIRWRREKFYCHGNSSITCEKIDYFDCTDETVNNIVSYMSVDGYVKGPKTYVVADDLVLKESSPTSVLHFINHFQTPLNDLKEKVINIGLNECLSILKASLTSTAALTNGLGHLVIEEQEGGSVNLQRSVNKDLFHLI