AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84594

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84594.t1 MTR_7g066260 73.060 464 95 5 1 435 1 463 0.0 665
MS.gene84594.t1 MTR_7g066290 66.667 462 99 4 1 435 1 434 0.0 583
MS.gene84594.t1 MTR_7g066360 59.698 464 141 9 3 435 2 450 2.19e-171 489
MS.gene84594.t1 MTR_7g066570 57.464 489 144 13 1 434 1 480 2.88e-161 467
MS.gene84594.t1 MTR_7g066340 57.298 459 154 10 9 435 6 454 1.09e-159 459
MS.gene84594.t1 MTR_1g041315 55.022 458 156 8 3 418 2 451 3.56e-157 453
MS.gene84594.t1 MTR_7g066350 59.292 452 143 10 11 431 5 446 1.16e-154 446
MS.gene84594.t1 MTR_7g066400 53.696 460 139 10 11 430 8 433 1.56e-148 430
MS.gene84594.t1 MTR_7g012680 53.829 457 173 10 3 434 2 445 5.24e-146 424
MS.gene84594.t1 MTR_7g066310 56.064 437 123 12 12 435 4 384 8.91e-143 414
MS.gene84594.t1 MTR_7g058710 48.996 498 169 13 1 434 1 477 2.05e-137 403
MS.gene84594.t1 MTR_7g066580 47.210 466 169 13 21 434 1 441 2.90e-116 347
MS.gene84594.t1 MTR_1g014060 46.528 432 154 7 24 434 9 384 5.59e-114 340
MS.gene84594.t1 MTR_7g058700 47.018 436 158 11 27 434 531 921 4.75e-106 335
MS.gene84594.t1 MTR_7g066280 48.635 403 134 11 94 435 1 391 1.52e-103 314
MS.gene84594.t1 MTR_7g066430 41.237 485 217 13 15 434 4 485 1.04e-102 315
MS.gene84594.t1 MTR_7g066410 40.198 505 215 14 15 434 10 512 1.60e-102 315
MS.gene84594.t1 MTR_7g066410 28.986 207 125 6 3 196 271 468 3.28e-12 68.6
MS.gene84594.t1 MTR_2g029400 42.004 469 160 12 3 424 2 405 5.18e-95 291
MS.gene84594.t1 MTR_7g063660 40.127 471 221 13 14 432 8 469 2.46e-88 277
MS.gene84594.t1 MTR_7g063880 40.421 475 228 16 3 435 2 463 5.96e-85 268
MS.gene84594.t1 MTR_7g066480 40.088 454 194 12 14 435 15 422 2.43e-84 265
MS.gene84594.t1 MTR_7g063820 39.919 496 214 16 1 432 1 476 2.14e-83 264
MS.gene84594.t1 MTR_7g062280 37.778 495 229 15 1 430 1 481 7.69e-83 263
MS.gene84594.t1 MTR_7g062300 38.797 482 230 17 1 430 1 469 2.39e-82 261
MS.gene84594.t1 MTR_7g063900 39.700 466 208 16 1 409 1 450 8.71e-82 260
MS.gene84594.t1 MTR_7g063900 27.523 218 115 7 250 428 13 226 5.28e-11 64.7
MS.gene84594.t1 MTR_7g063830 39.434 459 228 13 1 432 1 436 3.47e-80 254
MS.gene84594.t1 MTR_7g066490 39.773 440 199 16 15 435 16 408 1.08e-78 250
MS.gene84594.t1 MTR_3g065200 37.668 446 199 10 15 421 3 408 2.65e-78 250
MS.gene84594.t1 MTR_7g063890 39.690 451 207 15 14 409 26 466 5.24e-76 246
MS.gene84594.t1 MTR_7g063920 36.383 470 213 11 6 432 2 428 6.10e-75 241
MS.gene84594.t1 MTR_7g063840 34.864 479 247 12 1 430 1 463 8.70e-70 228
MS.gene84594.t1 MTR_4g019310 34.969 489 241 18 12 430 5 486 9.40e-67 221
MS.gene84594.t1 MTR_3g007740 37.773 458 221 16 14 432 8 440 9.91e-65 214
MS.gene84594.t1 MTR_4g019340 32.421 475 241 12 16 422 39 501 4.81e-62 209
MS.gene84594.t1 MTR_7g063670 35.556 450 241 13 16 432 16 449 9.71e-61 204
MS.gene84594.t1 MTR_4g017830 31.507 511 254 14 6 433 3 500 3.33e-60 205
MS.gene84594.t1 MTR_4g017440 31.610 503 253 15 8 430 7 498 5.95e-55 190
MS.gene84594.t1 MTR_4g017610 30.723 498 250 14 5 431 3 476 1.43e-54 189
MS.gene84594.t1 MTR_4g017410 31.034 493 254 14 9 430 3 480 2.63e-52 183
MS.gene84594.t1 MTR_2g067310 56.497 177 34 2 25 201 57 190 2.98e-52 176
MS.gene84594.t1 MTR_7g066680 44.574 258 78 4 239 431 78 335 1.28e-51 177
MS.gene84594.t1 MTR_7g066390 57.419 155 27 3 288 435 1 123 2.37e-42 147
MS.gene84594.t1 MTR_4g017470 27.976 504 234 13 11 430 8 466 1.44e-41 154
MS.gene84594.t1 MTR_4g017470 28.958 259 136 12 15 244 234 473 5.70e-14 73.9
MS.gene84594.t1 MTR_7g063720 39.720 214 113 3 237 434 13 226 2.07e-40 144
MS.gene84594.t1 MTR_7g063720 29.348 184 106 6 15 197 23 183 3.47e-14 72.4
MS.gene84594.t1 MTR_4g017550 29.202 476 230 15 42 432 18 471 2.62e-40 150
MS.gene84594.t1 MTR_4g017550 29.258 229 129 7 15 226 247 459 6.56e-12 67.8
MS.gene84594.t1 MTR_7g062270 44.211 190 91 7 1 187 1 178 4.06e-36 137
MS.gene84594.t1 MTR_8g023240 26.947 475 270 18 16 435 38 490 7.06e-25 107
MS.gene84594.t1 MTR_7g100420 36.052 233 110 8 240 434 166 397 1.21e-20 93.6
MS.gene84594.t1 MTR_7g100420 62.712 59 18 1 16 70 40 98 1.23e-13 72.8
MS.gene84594.t1 MTR_4g019240 41.322 121 57 5 11 121 9 125 3.12e-19 85.5
MS.gene84594.t1 MTR_1g115440 29.224 219 139 6 1 212 1 210 1.98e-18 84.7
MS.gene84594.t1 MTR_8g445860 29.048 210 124 6 15 212 13 209 3.51e-18 84.0
MS.gene84594.t1 MTR_0150s0010 30.137 219 136 5 1 212 1 209 9.47e-18 82.8
MS.gene84594.t1 MTR_1g115450 42.353 85 44 1 15 99 7 86 1.07e-15 74.3
MS.gene84594.t1 MTR_7g063690 27.536 276 117 8 16 274 13 222 1.47e-15 76.3
MS.gene84594.t1 MTR_1g115455 41.414 99 47 2 1 99 1 88 2.10e-14 72.8
MS.gene84594.t1 MTR_0150s0030 44.706 85 41 3 15 98 8 87 7.80e-14 70.5
MS.gene84594.t1 MTR_8g445920 40.860 93 45 2 1 93 1 83 1.37e-13 67.4
MS.gene84594.t1 MTR_8g044890 40.860 93 45 2 1 93 1 83 1.37e-13 67.4
MS.gene84594.t1 MTR_8g445910 43.158 95 45 4 15 105 8 97 4.70e-13 69.3
MS.gene84594.t1 MTR_8g044880 45.882 85 40 3 15 98 8 87 5.90e-13 69.3
MS.gene84594.t1 MTR_1g115470 40.206 97 51 2 15 109 6 97 7.67e-13 70.5
MS.gene84594.t1 MTR_7g063870 48.611 72 32 1 9 75 25 96 2.26e-12 67.4
MS.gene84594.t1 MTR_4g019330 30.682 176 78 8 261 426 32 173 8.45e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84594.t1 AT5G01130 30.556 468 258 12 8 434 3 444 8.30e-47 167
MS.gene84594.t1 AT5G01150 28.750 480 275 10 15 435 9 480 1.05e-44 162
MS.gene84594.t1 AT5G43240 30.754 491 253 21 16 430 10 489 2.45e-44 162
MS.gene84594.t1 AT5G43240 30.754 491 253 21 16 430 10 489 2.45e-44 162
MS.gene84594.t1 AT5G43240 30.754 491 253 21 16 430 10 489 2.45e-44 162
MS.gene84594.t1 AT3G09140 30.339 501 250 17 12 430 6 489 1.07e-43 160
MS.gene84594.t1 AT5G01140 28.842 475 251 14 15 434 9 451 1.11e-41 154
MS.gene84594.t1 AT3G09120 33.987 306 153 9 12 282 3 294 5.95e-41 148
MS.gene84594.t1 AT3G09140 28.463 527 254 16 12 430 6 517 1.11e-40 152
MS.gene84594.t1 AT5G01120 28.074 488 266 16 16 430 10 485 1.33e-40 152
MS.gene84594.t1 AT3G09110 33.028 327 177 9 15 312 9 322 4.60e-40 147
MS.gene84594.t1 AT5G37320 27.468 466 271 15 25 431 19 476 2.71e-29 119
MS.gene84594.t1 AT5G43240 29.130 230 117 11 242 430 121 345 1.65e-11 65.9

Find 85 sgRNAs with CRISPR-Local

Find 107 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCTAAATCCTCTATTTC+TGG 0.176355 7.3:+39322718 MS.gene84594:CDS
GATTTCTAAAACTGCTTATA+CGG 0.225351 7.3:-39321890 None:intergenic
AATATTGAAGCAGTGAAATT+TGG 0.233158 7.3:+39321666 MS.gene84594:CDS
GAACAAGTGAGTTAACTTTC+AGG 0.269206 7.3:+39322662 MS.gene84594:CDS
TACGCTTCCATTGAGTTTCT+AGG 0.275685 7.3:-39321774 None:intergenic
TTGTTCCAATTGGCAGTATC+TGG 0.287688 7.3:-39322645 None:intergenic
TAGCATTTCTTTGCAGGTAT+TGG 0.307775 7.3:-39321745 None:intergenic
GTTGAGTAGCATTTCTTTGC+AGG 0.309715 7.3:-39321751 None:intergenic
CCTCCAGAAATAGAGGATTT+AGG 0.324494 7.3:-39322721 None:intergenic
CAAGGTTACCTTGAGAGTTT+TGG 0.326815 7.3:+39321524 MS.gene84594:CDS
TGGTTCTTGAGTTCAAATTC+TGG 0.330009 7.3:-39322625 None:intergenic
TTCATAAAGCCATTGAAATC+AGG 0.342579 7.3:-39321972 None:intergenic
CAGAGGGCCATTAACAATTA+TGG 0.344557 7.3:+39322750 MS.gene84594:CDS
AAACTTGTTCCGAGATCATT+AGG 0.360814 7.3:-39322038 None:intergenic
CGAGGATTGGGAGCTTTGTA+AGG 0.384736 7.3:+39321851 MS.gene84594:CDS
CAGCTTTCTTACCTTCCCCT+TGG 0.391647 7.3:+39322462 MS.gene84594:CDS
TCTGTGACCATAATTGTTAA+TGG 0.396687 7.3:-39322757 None:intergenic
AGCTTTCTTACCTTCCCCTT+GGG 0.401322 7.3:+39322463 MS.gene84594:CDS
TCAAATTCTGGAAATATAGA+AGG 0.407750 7.3:-39322613 None:intergenic
ATCTTGATGAACACTATCTA+TGG 0.410521 7.3:+39321721 MS.gene84594:CDS
AGACAAATGTCTAAGGTCTA+AGG 0.411740 7.3:+39322567 MS.gene84594:CDS
ATTTCCTCCACATCATTAAG+AGG 0.417058 7.3:-39322844 None:intergenic
GTTAACTCACTTGTTCCAAT+TGG 0.441167 7.3:-39322655 None:intergenic
AGAAATCAGAAATGCATTTG+TGG 0.446046 7.3:+39321906 MS.gene84594:CDS
TAGATATGAAACAGCATCAA+TGG 0.446216 7.3:-39322806 None:intergenic
TGATTTCAATGGCTTTATGA+AGG 0.453740 7.3:+39321974 MS.gene84594:CDS
CTCAGTTACTGTCATGAAAA+CGG 0.464912 7.3:+39321941 MS.gene84594:CDS
GATTTGCCTCCTGATTTCAA+TGG 0.469147 7.3:+39321963 MS.gene84594:CDS
CTTTGTAAGGGAGATATAAG+TGG 0.470692 7.3:+39321864 MS.gene84594:CDS
GATTTCTATACTATGGCATC+TGG 0.470808 7.3:+39321471 None:intergenic
ACTTTCAGGTTAGAATATAG+TGG 0.478727 7.3:+39322676 MS.gene84594:CDS
ACGCTTCCATTGAGTTTCTA+GGG 0.480573 7.3:-39321773 None:intergenic
GAGATATCCTCCAGAAATAG+AGG 0.484729 7.3:-39322728 None:intergenic
CACTTTGATACAGTGTACTA+AGG 0.493971 7.3:-39321692 None:intergenic
TTCACAACCATGTGATTACC+CGG 0.494042 7.3:-39322367 None:intergenic
AGCTTCTTAACCTTACCGTT+AGG 0.500249 7.3:+39321612 MS.gene84594:CDS
TGAGTTCAGACAAATGTCTA+AGG 0.510047 7.3:+39322560 MS.gene84594:CDS
AAGAACCAGATACTGCCAAT+TGG 0.513709 7.3:+39322640 MS.gene84594:CDS
TTTAGGATCAACAAGTTTCA+CGG 0.517893 7.3:-39322704 None:intergenic
ACTCAACCCTAGAAACTCAA+TGG 0.519300 7.3:+39321767 MS.gene84594:CDS
TATTTCTAGACTTGTGGCTA+AGG 0.521080 7.3:+39321638 MS.gene84594:CDS
TTTGTCCACCAAAACTCTCA+AGG 0.524244 7.3:-39321532 None:intergenic
AGGTACTATTTCTAGACTTG+TGG 0.524292 7.3:+39321632 MS.gene84594:CDS
TTAGGATCAACAAGTTTCAC+GGG 0.532835 7.3:-39322703 None:intergenic
AATTATGGTCACAGACGACT+TGG 0.534216 7.3:+39322765 MS.gene84594:CDS
TTTCTTACCTTCCCCTTGGG+AGG 0.534245 7.3:+39322466 MS.gene84594:CDS
TTTACGTTTGCTTCAGACGC+AGG 0.545267 7.3:+39322058 MS.gene84594:CDS
TTTGTATGCTGAAGCAGGGA+AGG 0.547892 7.3:+39321569 MS.gene84594:CDS
TATTGATGATACACCTGTGC+AGG 0.551137 7.3:+39321818 MS.gene84594:CDS
TTTGTAAGGGAGATATAAGT+GGG 0.552990 7.3:+39321865 MS.gene84594:CDS
TATGTACTGGTTGAGGCCGT+TGG 0.555448 7.3:-39323044 None:intergenic
AACACTAGTTATCAGCAAGA+AGG 0.572969 7.3:+39322112 MS.gene84594:CDS
TCAACATCTGCTTTGACCAA+CGG 0.573453 7.3:+39323028 MS.gene84594:CDS
CAAAACTCCTCCCAAGGGGA+AGG 0.573835 7.3:-39322473 None:intergenic
AGAAATAGTACCTAACGGTA+AGG 0.576503 7.3:-39321622 None:intergenic
TTACGTTTGCTTCAGACGCA+GGG 0.577110 7.3:+39322059 MS.gene84594:CDS
ATGTGATTACCCGGGTCAGA+TGG 0.577443 7.3:-39322358 None:intergenic
TTCATATCTAGAAAGAATGA+AGG 0.578901 7.3:+39322819 MS.gene84594:CDS
CATTTGCAAAACTCCTCCCA+AGG 0.586395 7.3:-39322479 None:intergenic
ATCTGACCCGGGTAATCACA+TGG 0.589753 7.3:+39322360 MS.gene84594:CDS
TGTGTGATGCCTAATGATCT+CGG 0.591344 7.3:+39322029 MS.gene84594:CDS
ATTTGCAAAACTCCTCCCAA+GGG 0.593798 7.3:-39322478 None:intergenic
ACTAACCTATGTACTGGTTG+AGG 0.600521 7.3:-39323051 None:intergenic
GAAGGTCCCTCTTAATGATG+TGG 0.601475 7.3:+39322837 MS.gene84594:CDS
AAAGGACTTACCATCTGACC+CGG 0.601529 7.3:+39322348 MS.gene84594:CDS
GAGGATTGGGAGCTTTGTAA+GGG 0.602924 7.3:+39321852 MS.gene84594:CDS
TAGTGAACTAACCTATGTAC+TGG 0.608380 7.3:-39323057 None:intergenic
ACAGCATCAATGGATGACAT+TGG 0.609060 7.3:-39322796 None:intergenic
TTTCCTCCACATCATTAAGA+GGG 0.611469 7.3:-39322843 None:intergenic
ATCTGAGATTAGGATTGGAA+AGG 0.612389 7.3:+39322330 MS.gene84594:intron
GCAGGGACTAAATGATATTG+TGG 0.615707 7.3:+39322076 MS.gene84594:CDS
ACTAGTTATCAGCAAGAAGG+AGG 0.627985 7.3:+39322115 MS.gene84594:CDS
CCTAAATCCTCTATTTCTGG+AGG 0.628731 7.3:+39322721 MS.gene84594:CDS
ATCAGTTGAACAAGGTGACA+AGG 0.631534 7.3:+39321506 MS.gene84594:CDS
AACGGCCTCAACCAGTACAT+AGG 0.634113 7.3:+39323046 MS.gene84594:CDS
ATAAAGCCATTGAAATCAGG+AGG 0.635002 7.3:-39321969 None:intergenic
GGTCCCTCTTAATGATGTGG+AGG 0.640233 7.3:+39322840 MS.gene84594:CDS
AGTCTAGAAATAGTACCTAA+CGG 0.652429 7.3:-39321627 None:intergenic
TTTCTGGAGGATATCTCAGA+GGG 0.659388 7.3:+39322734 MS.gene84594:CDS
TCACAACCATGTGATTACCC+GGG 0.667934 7.3:-39322366 None:intergenic
GTTGGTCAAAGCAGATGTTG+AGG 0.676855 7.3:-39323026 None:intergenic
ATTTCTGGAGGATATCTCAG+AGG 0.687672 7.3:+39322733 MS.gene84594:CDS
GCAACTGAATCAGTTGAACA+AGG 0.691980 7.3:+39321498 MS.gene84594:CDS
AAGGACTTACCATCTGACCC+GGG 0.713753 7.3:+39322349 MS.gene84594:CDS
TTTGCAAAACTCCTCCCAAG+GGG 0.713756 7.3:-39322477 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAACTGCTACTTTTATAATT+CGG + chr7.3:39321997-39322016 MS.gene84594:CDS 20.0%
!!! CAATATTTTGATTGCATATA+TGG + chr7.3:39322969-39322988 MS.gene84594:intron 20.0%
!!! TCTTTGTTGTTGATTATTTT+AGG + chr7.3:39322165-39322184 MS.gene84594:CDS 20.0%
! AATATTGAAGCAGTGAAATT+TGG + chr7.3:39321666-39321685 MS.gene84594:CDS 25.0%
! GTATAAGTATTTATTTGTGC+AGG + chr7.3:39322207-39322226 MS.gene84594:intron 25.0%
! TTCATATCTAGAAAGAATGA+AGG + chr7.3:39322819-39322838 MS.gene84594:CDS 25.0%
!! TCAAATTCTGGAAATATAGA+AGG - chr7.3:39322616-39322635 None:intergenic 25.0%
!!! AACTGCTACTTTTATAATTC+GGG + chr7.3:39321998-39322017 MS.gene84594:CDS 25.0%
!!! GATTTCTAAAACTGCTTATA+CGG - chr7.3:39321893-39321912 None:intergenic 25.0%
AGAAATCAGAAATGCATTTG+TGG + chr7.3:39321906-39321925 MS.gene84594:CDS 30.0%
AGTCTAGAAATAGTACCTAA+CGG - chr7.3:39321630-39321649 None:intergenic 30.0%
ATCTTGATGAACACTATCTA+TGG + chr7.3:39321721-39321740 MS.gene84594:CDS 30.0%
TAGATATGAAACAGCATCAA+TGG - chr7.3:39322809-39322828 None:intergenic 30.0%
TCTGTGACCATAATTGTTAA+TGG - chr7.3:39322760-39322779 None:intergenic 30.0%
TTCATAAAGCCATTGAAATC+AGG - chr7.3:39321975-39321994 None:intergenic 30.0%
TTTGTAAGGGAGATATAAGT+GGG + chr7.3:39321865-39321884 MS.gene84594:CDS 30.0%
! TTTAGGATCAACAAGTTTCA+CGG - chr7.3:39322707-39322726 None:intergenic 30.0%
!! ACTTTCAGGTTAGAATATAG+TGG + chr7.3:39322676-39322695 MS.gene84594:CDS 30.0%
!! TGATTTCAATGGCTTTATGA+AGG + chr7.3:39321974-39321993 MS.gene84594:CDS 30.0%
AACACTAGTTATCAGCAAGA+AGG + chr7.3:39322112-39322131 MS.gene84594:CDS 35.0%
AGAAATAGTACCTAACGGTA+AGG - chr7.3:39321625-39321644 None:intergenic 35.0%
ATAAAGCCATTGAAATCAGG+AGG - chr7.3:39321972-39321991 None:intergenic 35.0%
ATTGGTGTGAAGTAGGTAAA+CGG + chr7.3:39322877-39322896 MS.gene84594:intron 35.0%
ATTTCCTCCACATCATTAAG+AGG - chr7.3:39322847-39322866 None:intergenic 35.0%
CACTTTGATACAGTGTACTA+AGG - chr7.3:39321695-39321714 None:intergenic 35.0%
CTCAGTTACTGTCATGAAAA+CGG + chr7.3:39321941-39321960 MS.gene84594:CDS 35.0%
CTTTGTAAGGGAGATATAAG+TGG + chr7.3:39321864-39321883 MS.gene84594:CDS 35.0%
GAACAAGTGAGTTAACTTTC+AGG + chr7.3:39322662-39322681 MS.gene84594:CDS 35.0%
GAGGAAATTGTCGTTAGTAT+TGG + chr7.3:39322859-39322878 MS.gene84594:intron 35.0%
GATCCTAAATCCTCTATTTC+TGG + chr7.3:39322718-39322737 MS.gene84594:CDS 35.0%
GTTAACTCACTTGTTCCAAT+TGG - chr7.3:39322658-39322677 None:intergenic 35.0%
TAGCATTTCTTTGCAGGTAT+TGG - chr7.3:39321748-39321767 None:intergenic 35.0%
TGAGTTCAGACAAATGTCTA+AGG + chr7.3:39322560-39322579 MS.gene84594:CDS 35.0%
TGATTGCATATATGGTTGCA+GGG + chr7.3:39322977-39322996 MS.gene84594:intron 35.0%
TGGTTCTTGAGTTCAAATTC+TGG - chr7.3:39322628-39322647 None:intergenic 35.0%
TTAGGATCAACAAGTTTCAC+GGG - chr7.3:39322706-39322725 None:intergenic 35.0%
TTCCAATCCTAATCTCAGAT+TGG - chr7.3:39322330-39322349 None:intergenic 35.0%
TTGATTGCATATATGGTTGC+AGG + chr7.3:39322976-39322995 MS.gene84594:intron 35.0%
TTTCCTCCACATCATTAAGA+GGG - chr7.3:39322846-39322865 None:intergenic 35.0%
! AAACTTGTTCCGAGATCATT+AGG - chr7.3:39322041-39322060 None:intergenic 35.0%
! AAAGTCTGTCAGAGTAGTTT+TGG - chr7.3:39322263-39322282 None:intergenic 35.0%
! AGACAAATGTCTAAGGTCTA+AGG + chr7.3:39322567-39322586 MS.gene84594:CDS 35.0%
! AGTTGTTATGAGTCTGAAAC+AGG - chr7.3:39322947-39322966 None:intergenic 35.0%
! ATCTGAGATTAGGATTGGAA+AGG + chr7.3:39322330-39322349 MS.gene84594:intron 35.0%
! CAACATTCCAATCTGAGATT+AGG + chr7.3:39322320-39322339 MS.gene84594:intron 35.0%
! TTCCAATCTGAGATTAGGAT+TGG + chr7.3:39322325-39322344 MS.gene84594:intron 35.0%
!! AAAGTTTTGTATGCTGAAGC+AGG + chr7.3:39321564-39321583 MS.gene84594:CDS 35.0%
!! AAGTTTTGTATGCTGAAGCA+GGG + chr7.3:39321565-39321584 MS.gene84594:CDS 35.0%
!! AGGTACTATTTCTAGACTTG+TGG + chr7.3:39321632-39321651 MS.gene84594:CDS 35.0%
!! TATTTCTAGACTTGTGGCTA+AGG + chr7.3:39321638-39321657 MS.gene84594:CDS 35.0%
AAGAACCAGATACTGCCAAT+TGG + chr7.3:39322640-39322659 MS.gene84594:CDS 40.0%
AATTATGGTCACAGACGACT+TGG + chr7.3:39322765-39322784 MS.gene84594:CDS 40.0%
ACAGCATCAATGGATGACAT+TGG - chr7.3:39322799-39322818 None:intergenic 40.0%
ACGCTTCCATTGAGTTTCTA+GGG - chr7.3:39321776-39321795 None:intergenic 40.0%
ACTAGTTATCAGCAAGAAGG+AGG + chr7.3:39322115-39322134 MS.gene84594:CDS 40.0%
ACTCAACCCTAGAAACTCAA+TGG + chr7.3:39321767-39321786 MS.gene84594:CDS 40.0%
AGCTTCTTAACCTTACCGTT+AGG + chr7.3:39321612-39321631 MS.gene84594:CDS 40.0%
ATCAGTTGAACAAGGTGACA+AGG + chr7.3:39321506-39321525 MS.gene84594:CDS 40.0%
ATTTGCAAAACTCCTCCCAA+GGG - chr7.3:39322481-39322500 None:intergenic 40.0%
CAGAGGGCCATTAACAATTA+TGG + chr7.3:39322750-39322769 MS.gene84594:CDS 40.0%
CCTCCAGAAATAGAGGATTT+AGG - chr7.3:39322724-39322743 None:intergenic 40.0%
GAGATATCCTCCAGAAATAG+AGG - chr7.3:39322731-39322750 None:intergenic 40.0%
GATTTGCCTCCTGATTTCAA+TGG + chr7.3:39321963-39321982 MS.gene84594:CDS 40.0%
GCAACTGAATCAGTTGAACA+AGG + chr7.3:39321498-39321517 MS.gene84594:CDS 40.0%
GCAGGGACTAAATGATATTG+TGG + chr7.3:39322076-39322095 MS.gene84594:CDS 40.0%
GTTGAGTAGCATTTCTTTGC+AGG - chr7.3:39321754-39321773 None:intergenic 40.0%
TACGCTTCCATTGAGTTTCT+AGG - chr7.3:39321777-39321796 None:intergenic 40.0%
TCAACATCTGCTTTGACCAA+CGG + chr7.3:39323028-39323047 MS.gene84594:CDS 40.0%
TGTGTGATGCCTAATGATCT+CGG + chr7.3:39322029-39322048 MS.gene84594:CDS 40.0%
TTCACAACCATGTGATTACC+CGG - chr7.3:39322370-39322389 None:intergenic 40.0%
TTGTTCCAATTGGCAGTATC+TGG - chr7.3:39322648-39322667 None:intergenic 40.0%
TTTGTCCACCAAAACTCTCA+AGG - chr7.3:39321535-39321554 None:intergenic 40.0%
! ATTTCTGGAGGATATCTCAG+AGG + chr7.3:39322733-39322752 MS.gene84594:CDS 40.0%
! CAAGGTTACCTTGAGAGTTT+TGG + chr7.3:39321524-39321543 MS.gene84594:CDS 40.0%
! GGAGTTTTGCAAATGCTAGA+AGG + chr7.3:39322487-39322506 MS.gene84594:CDS 40.0%
! TATTGATGATACACCTGTGC+AGG + chr7.3:39321818-39321837 MS.gene84594:CDS 40.0%
! TTTCTGGAGGATATCTCAGA+GGG + chr7.3:39322734-39322753 MS.gene84594:CDS 40.0%
!! CCTAAATCCTCTATTTCTGG+AGG + chr7.3:39322721-39322740 MS.gene84594:CDS 40.0%
!! CGTTAGTATTGGTGTGAAGT+AGG + chr7.3:39322870-39322889 MS.gene84594:intron 40.0%
!! GATTTTGTTTGCTACAGCAG+AGG + chr7.3:39322417-39322436 MS.gene84594:CDS 40.0%
!!! AGGTTTTTTTGTGCGAGGAT+TGG + chr7.3:39321838-39321857 MS.gene84594:CDS 40.0%
!!! GGTTTTTTTGTGCGAGGATT+GGG + chr7.3:39321839-39321858 MS.gene84594:CDS 40.0%
AAAGGACTTACCATCTGACC+CGG + chr7.3:39322348-39322367 MS.gene84594:CDS 45.0%
AGCTTTCTTACCTTCCCCTT+GGG + chr7.3:39322463-39322482 MS.gene84594:CDS 45.0%
CATTTGCAAAACTCCTCCCA+AGG - chr7.3:39322482-39322501 None:intergenic 45.0%
GAAGGTCCCTCTTAATGATG+TGG + chr7.3:39322837-39322856 MS.gene84594:CDS 45.0%
GTGTGAAGTAGGTAAACGGA+TGG + chr7.3:39322881-39322900 MS.gene84594:intron 45.0%
GTTGGTCAAAGCAGATGTTG+AGG - chr7.3:39323029-39323048 None:intergenic 45.0%
TCACAACCATGTGATTACCC+GGG - chr7.3:39322369-39322388 None:intergenic 45.0%
TCGCACAAAAAAACCTGCAC+AGG - chr7.3:39321834-39321853 None:intergenic 45.0%
TTACGTTTGCTTCAGACGCA+GGG + chr7.3:39322059-39322078 MS.gene84594:CDS 45.0%
TTTACGTTTGCTTCAGACGC+AGG + chr7.3:39322058-39322077 MS.gene84594:CDS 45.0%
TTTGCAAAACTCCTCCCAAG+GGG - chr7.3:39322480-39322499 None:intergenic 45.0%
TTTGTATGCTGAAGCAGGGA+AGG + chr7.3:39321569-39321588 MS.gene84594:CDS 45.0%
! GAGGATTGGGAGCTTTGTAA+GGG + chr7.3:39321852-39321871 MS.gene84594:CDS 45.0%
!! GGTTACCTTGAGAGTTTTGG+TGG + chr7.3:39321527-39321546 MS.gene84594:CDS 45.0%
!!! TGTGCAGGTTTTTTTGTGCG+AGG + chr7.3:39321833-39321852 MS.gene84594:CDS 45.0%
AACGGCCTCAACCAGTACAT+AGG + chr7.3:39323046-39323065 MS.gene84594:CDS 50.0%
AAGGACTTACCATCTGACCC+GGG + chr7.3:39322349-39322368 MS.gene84594:CDS 50.0%
ATCTGACCCGGGTAATCACA+TGG + chr7.3:39322360-39322379 MS.gene84594:CDS 50.0%
ATGTGATTACCCGGGTCAGA+TGG - chr7.3:39322361-39322380 None:intergenic 50.0%
CAGCTTTCTTACCTTCCCCT+TGG + chr7.3:39322462-39322481 MS.gene84594:CDS 50.0%
GGTCCCTCTTAATGATGTGG+AGG + chr7.3:39322840-39322859 MS.gene84594:CDS 50.0%
TTTCTTACCTTCCCCTTGGG+AGG + chr7.3:39322466-39322485 MS.gene84594:CDS 50.0%
! CGAGGATTGGGAGCTTTGTA+AGG + chr7.3:39321851-39321870 MS.gene84594:CDS 50.0%
!! TATGTACTGGTTGAGGCCGT+TGG - chr7.3:39323047-39323066 None:intergenic 50.0%
CAAAACTCCTCCCAAGGGGA+AGG - chr7.3:39322476-39322495 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 39321483 39323072 39321483 ID=MS.gene84594
chr7.3 mRNA 39321483 39323072 39321483 ID=MS.gene84594.t1;Parent=MS.gene84594
chr7.3 exon 39321483 39322186 39321483 ID=MS.gene84594.t1.exon1;Parent=MS.gene84594.t1
chr7.3 CDS 39321483 39322186 39321483 ID=cds.MS.gene84594.t1;Parent=MS.gene84594.t1
chr7.3 exon 39322342 39322870 39322342 ID=MS.gene84594.t1.exon2;Parent=MS.gene84594.t1
chr7.3 CDS 39322342 39322870 39322342 ID=cds.MS.gene84594.t1;Parent=MS.gene84594.t1
chr7.3 exon 39322998 39323072 39322998 ID=MS.gene84594.t1.exon3;Parent=MS.gene84594.t1
chr7.3 CDS 39322998 39323072 39322998 ID=cds.MS.gene84594.t1;Parent=MS.gene84594.t1
Gene Sequence

>MS.gene84594

ATGGCATCTGGCACTGCAACTGAATCAGTTGAACAAGGTGACAAGGTTACCTTGAGAGTTTTGGTGGACAAAGAAAAGAACAAAGTTTTGTATGCTGAAGCAGGGAAGGATTTTGTTGATGCTCTTTTCAGCTTCTTAACCTTACCGTTAGGTACTATTTCTAGACTTGTGGCTAAGGACTTAAATATTGAAGCAGTGAAATTTGGCAGCCTTAGTACACTGTATCAAAGTGTGTCAGATCTTGATGAACACTATCTATGGTCCAATACCTGCAAAGAAATGCTACTCAACCCTAGAAACTCAATGGAAGCGTACTGTCGACAGCTCAAGCTGAATATTGATGATACACCTGTGCAGGTTTTTTTGTGCGAGGATTGGGAGCTTTGTAAGGGAGATATAAGTGGGAGCCGTATAAGCAGTTTTAGAAATCAGAAATGCATTTGTGGAAAGCTTTTGAACTCAGTTACTGTCATGAAAACGGATTTGCCTCCTGATTTCAATGGCTTTATGAAGGAAACTGCTACTTTTATAATTCGGGATGATCTTTGTGTGATGCCTAATGATCTCGGAACAAGTTTACGTTTGCTTCAGACGCAGGGACTAAATGATATTGTGGATGTTGAGAAAAAAACACTAGTTATCAGCAAGAAGGAGGAATGTTTTCTCAGTTTCTATATTATCGTCTTTGTTGTTGATTATTTTAGGTGAATTTATATTATTCTTAGTATAAGTATTTATTTGTGCAGGTAGTTGATCTTCTCAAATTGTCGTTGCTTTCCAAAACTACTCTGACAGACTTTATCTTTAAAAATACGAAATTTCTTGCTAAATCAAAATCAACATTCCAATCTGAGATTAGGATTGGAAAGGACTTACCATCTGACCCGGGTAATCACATGGTTGTGAAAGTACTGAGAAGAAAATCAAACAGAAAGATTTTGTTTGCTACAGCAGAGGAAGATTTTGCAGACTTTCTTTTCAGCTTTCTTACCTTCCCCTTGGGAGGAGTTTTGCAAATGCTAGAAGGATTATCTTCTTTAAGCAGCATTGATGTTTTATATACAAGCATGACTGAGTTGAGTTCAGACAAATGTCTAAGGTCTAAGGAACTTAAAGATGAGTTAGCTACGCCTTCTATATTTCCAGAATTTGAACTCAAGAACCAGATACTGCCAATTGGAACAAGTGAGTTAACTTTCAGGTTAGAATATAGTGGTAAACCCGTGAAACTTGTTGATCCTAAATCCTCTATTTCTGGAGGATATCTCAGAGGGCCATTAACAATTATGGTCACAGACGACTTGGTTGTGACTCCAATGTCATCCATTGATGCTGTTTCATATCTAGAAAGAATGAAGGTCCCTCTTAATGATGTGGAGGAAATTGTCGTTAGTATTGGTGTGAAGTAGGTAAACGGATGGTGTAATACTTTATTTAGCACATTCTTTCATTCTAATATTTCCTGTTTCAGACTCATAACAACTAACAATATTTTGATTGCATATATGGTTGCAGGGTCTCAGCATACTAAAAGCTTCACTGACCTCAACATCTGCTTTGACCAACGGCCTCAACCAGTACATAGGTTAG
Protein sequence

>MS.gene84594.t1

MASGTATESVEQGDKVTLRVLVDKEKNKVLYAEAGKDFVDALFSFLTLPLGTISRLVAKDLNIEAVKFGSLSTLYQSVSDLDEHYLWSNTCKEMLLNPRNSMEAYCRQLKLNIDDTPVQVFLCEDWELCKGDISGSRISSFRNQKCICGKLLNSVTVMKTDLPPDFNGFMKETATFIIRDDLCVMPNDLGTSLRLLQTQGLNDIVDVEKKTLVISKKEECFLSFYIIVFVVDYFRIGKDLPSDPGNHMVVKVLRRKSNRKILFATAEEDFADFLFSFLTFPLGGVLQMLEGLSSLSSIDVLYTSMTELSSDKCLRSKELKDELATPSIFPEFELKNQILPIGTSELTFRLEYSGKPVKLVDPKSSISGGYLRGPLTIMVTDDLVVTPMSSIDAVSYLERMKVPLNDVEEIVGLSILKASLTSTSALTNGLNQYIG