AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055264

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055264.t1 MTR_7g062280 73.140 484 79 4 5 438 3 485 0.0 677
MS.gene055264.t1 MTR_7g062300 73.895 475 83 4 1 437 1 472 0.0 661
MS.gene055264.t1 MTR_7g063920 69.863 438 124 5 1 438 1 430 0.0 579
MS.gene055264.t1 MTR_7g063900 52.371 485 181 8 1 438 1 482 2.80e-144 421
MS.gene055264.t1 MTR_7g063880 51.875 480 171 11 1 438 1 462 4.31e-140 410
MS.gene055264.t1 MTR_7g063840 49.676 463 196 5 10 438 8 467 1.45e-135 399
MS.gene055264.t1 MTR_7g063660 49.894 471 194 7 7 438 4 471 1.16e-133 394
MS.gene055264.t1 MTR_7g063820 49.689 483 193 8 1 438 1 478 5.46e-132 390
MS.gene055264.t1 MTR_7g063830 48.428 477 168 9 1 438 1 438 3.06e-127 376
MS.gene055264.t1 MTR_3g007740 48.945 474 163 11 8 438 5 442 1.59e-125 372
MS.gene055264.t1 MTR_7g063890 51.255 478 182 9 9 438 24 498 3.77e-124 370
MS.gene055264.t1 MTR_7g063670 47.170 477 166 11 10 438 13 451 1.74e-119 357
MS.gene055264.t1 MTR_7g066430 40.580 483 232 6 13 440 5 487 1.10e-96 300
MS.gene055264.t1 MTR_7g066430 29.583 240 131 11 216 432 1 225 7.65e-12 67.8
MS.gene055264.t1 MTR_7g066570 37.045 494 233 9 4 438 6 480 1.26e-91 289
MS.gene055264.t1 MTR_7g066260 38.969 485 218 10 1 434 1 458 1.24e-88 279
MS.gene055264.t1 MTR_3g065200 39.514 453 188 8 12 425 3 408 1.77e-88 277
MS.gene055264.t1 MTR_7g066410 35.812 511 240 10 10 438 8 512 6.62e-82 262
MS.gene055264.t1 MTR_7g066480 36.617 467 195 8 12 438 16 421 6.59e-80 254
MS.gene055264.t1 MTR_7g066340 36.307 482 226 12 1 434 1 449 9.31e-80 255
MS.gene055264.t1 MTR_7g066580 38.826 443 225 12 24 431 7 438 4.01e-78 250
MS.gene055264.t1 MTR_7g012680 36.008 486 222 9 1 438 1 445 7.56e-77 247
MS.gene055264.t1 MTR_7g066290 36.853 483 202 10 1 434 1 429 6.62e-76 244
MS.gene055264.t1 MTR_7g066360 38.095 483 208 10 2 434 4 445 8.81e-76 245
MS.gene055264.t1 MTR_7g066360 31.579 209 117 10 4 200 259 453 2.19e-13 72.4
MS.gene055264.t1 MTR_7g066350 36.570 484 224 11 11 446 8 456 9.71e-76 244
MS.gene055264.t1 MTR_7g058710 34.731 501 232 15 1 434 1 473 4.84e-75 243
MS.gene055264.t1 MTR_7g063720 53.086 243 93 4 199 438 2 226 4.47e-74 233
MS.gene055264.t1 MTR_7g063720 28.230 209 112 8 12 193 23 220 3.31e-16 78.2
MS.gene055264.t1 MTR_7g066400 35.451 488 233 13 1 448 1 446 1.11e-72 236
MS.gene055264.t1 MTR_1g041315 33.264 478 230 11 3 422 5 451 2.87e-67 223
MS.gene055264.t1 MTR_1g041315 28.814 236 140 8 219 432 14 243 8.99e-13 70.5
MS.gene055264.t1 MTR_7g066490 33.898 472 187 14 12 438 16 407 6.13e-64 212
MS.gene055264.t1 MTR_2g029400 34.452 447 226 12 2 427 4 404 1.43e-62 208
MS.gene055264.t1 MTR_7g066310 35.047 428 220 10 11 434 6 379 8.47e-62 206
MS.gene055264.t1 MTR_7g066310 27.638 199 121 7 8 193 189 377 1.93e-14 75.1
MS.gene055264.t1 MTR_7g063850 44.224 303 138 10 146 438 1 282 1.47e-59 197
MS.gene055264.t1 MTR_7g058700 33.115 459 199 8 24 440 531 923 1.99e-57 204
MS.gene055264.t1 MTR_7g058700 27.957 186 108 7 12 193 752 915 6.56e-12 68.2
MS.gene055264.t1 MTR_4g019310 31.781 494 271 14 6 438 2 490 1.90e-54 189
MS.gene055264.t1 MTR_7g063690 43.388 242 108 5 8 246 7 222 3.41e-51 173
MS.gene055264.t1 MTR_4g017830 28.070 513 290 13 1 442 1 505 1.96e-48 174
MS.gene055264.t1 MTR_4g017470 29.065 492 281 12 1 442 1 474 1.50e-46 168
MS.gene055264.t1 MTR_7g062270 50.273 183 54 4 6 151 3 185 1.44e-45 163
MS.gene055264.t1 MTR_7g100420 38.762 307 172 6 132 434 99 393 8.21e-45 161
MS.gene055264.t1 MTR_7g100420 63.636 55 16 1 1 55 32 82 6.21e-12 67.4
MS.gene055264.t1 MTR_7g066680 35.831 307 144 7 176 436 37 336 2.22e-42 153
MS.gene055264.t1 MTR_7g066280 33.133 332 183 10 125 434 72 386 1.35e-40 150
MS.gene055264.t1 MTR_4g017410 27.843 510 271 13 6 442 3 488 3.69e-40 150
MS.gene055264.t1 MTR_4g017440 28.544 522 279 16 1 443 1 507 5.07e-40 150
MS.gene055264.t1 MTR_4g019340 27.778 486 262 11 10 426 36 501 6.27e-40 150
MS.gene055264.t1 MTR_4g017610 29.637 496 261 16 5 434 2 475 1.50e-37 143
MS.gene055264.t1 MTR_1g014060 38.916 203 86 3 21 186 9 210 8.14e-32 125
MS.gene055264.t1 MTR_1g014060 38.860 193 97 4 249 438 210 384 1.56e-30 122
MS.gene055264.t1 MTR_8g023240 26.959 319 201 8 15 304 40 355 9.69e-28 116
MS.gene055264.t1 MTR_7g063870 38.764 178 64 3 6 183 25 157 1.22e-27 111
MS.gene055264.t1 MTR_4g017550 29.741 464 240 16 42 434 21 469 2.26e-27 114
MS.gene055264.t1 MTR_8g445860 29.114 237 126 6 219 431 13 231 5.45e-20 89.4
MS.gene055264.t1 MTR_8g445860 28.631 241 118 6 3 199 8 238 2.65e-19 87.4
MS.gene055264.t1 MTR_7g063760 60.294 68 26 1 373 439 1 68 8.67e-19 80.9
MS.gene055264.t1 MTR_2g067310 39.456 147 75 4 18 159 53 190 9.62e-19 85.9
MS.gene055264.t1 MTR_1g115440 28.980 245 120 6 1 198 1 238 1.38e-18 85.1
MS.gene055264.t1 MTR_0150s0010 27.572 243 119 5 5 198 3 237 3.10e-18 84.3
MS.gene055264.t1 MTR_7g066390 57.971 69 29 0 366 434 50 118 1.15e-17 80.5
MS.gene055264.t1 MTR_1g115455 27.049 244 122 8 1 199 1 233 1.90e-13 70.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055264.t1 AT5G01150 28.200 500 290 11 7 450 4 490 4.44e-48 172
MS.gene055264.t1 AT5G01130 29.474 475 258 12 7 438 4 444 2.36e-47 169
MS.gene055264.t1 AT5G01120 28.862 492 270 13 13 437 10 488 3.45e-45 164
MS.gene055264.t1 AT5G01140 27.800 500 264 13 7 450 4 462 4.54e-45 164
MS.gene055264.t1 AT3G09110 29.217 332 186 6 13 302 10 334 5.27e-38 141
MS.gene055264.t1 AT5G43240 26.877 506 286 11 13 447 10 502 5.39e-36 139
MS.gene055264.t1 AT5G43240 26.877 506 286 11 13 447 10 502 5.39e-36 139
MS.gene055264.t1 AT5G43240 26.877 506 286 11 13 447 10 502 5.39e-36 139
MS.gene055264.t1 AT3G09120 32.372 312 159 6 11 273 5 313 2.40e-35 134
MS.gene055264.t1 AT3G09120 27.200 250 144 9 219 444 6 241 1.01e-12 69.3
MS.gene055264.t1 AT5G37320 25.651 499 269 14 13 438 10 479 5.22e-23 101
MS.gene055264.t1 AT3G09140 52.632 95 42 1 1 95 1 92 7.18e-23 101
MS.gene055264.t1 AT3G09140 29.394 330 202 10 126 438 178 493 2.82e-22 99.8
MS.gene055264.t1 AT3G09140 52.632 95 42 1 1 95 1 92 7.97e-23 101
MS.gene055264.t1 AT5G43240 25.806 341 216 9 131 447 31 358 8.02e-16 79.3

Find 88 sgRNAs with CRISPR-Local

Find 114 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGAATTGTTCGAATATT+TGG 0.134741 7.4:-41572177 MS.gene055264:CDS
AAGAAGCCAAACCATTTGTT+AGG 0.294939 7.4:+41571567 None:intergenic
GTATTTCACTACAGATGATT+TGG 0.296305 7.4:-41571821 MS.gene055264:CDS
TACTCCGATTAATGATTTGA+TGG 0.318404 7.4:-41571746 MS.gene055264:CDS
TCAAACCTGGTGTAGATAAG+AGG 0.320194 7.4:-41571924 MS.gene055264:CDS
CTTGTATAGTCAATACAGTT+TGG 0.331568 7.4:+41572602 None:intergenic
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.4:+41571781 None:intergenic
TTGTATAGTCAATACAGTTT+GGG 0.345255 7.4:+41572603 None:intergenic
TCCTGTTGAGGGTTATGTTA+AGG 0.346185 7.4:-41571854 MS.gene055264:CDS
ATCCTTGAGGGAGAGGTATA+AGG 0.357496 7.4:+41572675 None:intergenic
TGGTAATATTAATATTATTC+CGG 0.358269 7.4:-41571956 MS.gene055264:CDS
ACTGACTCCAATTTCAGCTT+TGG 0.361128 7.4:-41571788 MS.gene055264:CDS
TACAAGCTTTAGTCTGTTCC+AGG 0.364150 7.4:-41572585 MS.gene055264:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.4:+41573095 None:intergenic
CTGACTCCAATTTCAGCTTT+GGG 0.368692 7.4:-41571787 MS.gene055264:CDS
CCTGTTGAGGGTTATGTTAA+GGG 0.375562 7.4:-41571853 MS.gene055264:CDS
TGAACACCAGGTTCAAGAAT+TGG 0.375903 7.4:+41572006 None:intergenic
TTTAGGAACAATTGCGAGAT+TGG 0.385329 7.4:-41572998 MS.gene055264:CDS
ATCTGCCCTAACAAATGGTT+TGG 0.386717 7.4:-41571573 MS.gene055264:CDS
AACCATCCCTTGAGAGTTCA+AGG 0.397703 7.4:-41572344 MS.gene055264:CDS
CTCCCTCAAGGATTTGTTAA+CGG 0.402590 7.4:-41572665 MS.gene055264:CDS
CATTAATCGGAGTATTAAAT+CGG 0.409032 7.4:+41571755 None:intergenic
TTTAGTCTGTTCCAGGAGTT+CGG 0.410886 7.4:-41572578 MS.gene055264:CDS
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.4:-41573015 MS.gene055264:CDS
AAAGTCTTGTTTGCAGAAGC+AGG 0.413091 7.4:-41573063 MS.gene055264:CDS
GTAGTGTCTTAGCATATTGA+AGG 0.414424 7.4:-41571612 MS.gene055264:intron
TTTGGAGAGAATTGTTCCTT+TGG 0.438718 7.4:-41572159 MS.gene055264:CDS
TAATCTTCCGCTGAGTTGAT+TGG 0.445711 7.4:+41572853 None:intergenic
CAAATCGGTCAAGGTTGACT+TGG 0.446749 7.4:+41572380 None:intergenic
TCTGAATCTCACTAAAGAAA+AGG 0.453914 7.4:-41572522 MS.gene055264:intron
CCAGGTTTGAAAATTTGAAC+CGG 0.455070 7.4:+41571937 None:intergenic
CCCTTAACATAACCCTCAAC+AGG 0.459901 7.4:+41571853 None:intergenic
GTAGATAAGAGGGGTTATGC+TGG 0.469301 7.4:-41571913 MS.gene055264:CDS
TGATTGCTTAACTTTAACTG+TGG 0.471996 7.4:+41572036 None:intergenic
GTATGATGGTGAAATTGTTA+TGG 0.472772 7.4:-41572313 MS.gene055264:CDS
TTTCTTACATTTCCTTTAGG+TGG 0.477770 7.4:-41572195 MS.gene055264:CDS
TCAACATCTGCCCTAACAAA+TGG 0.480143 7.4:-41571578 MS.gene055264:CDS
CAAACCTGGTGTAGATAAGA+GGG 0.482365 7.4:-41571923 MS.gene055264:CDS
TATCAAAGTCATTCTAAAGC+TGG 0.495093 7.4:-41572289 MS.gene055264:CDS
TCAAGGTTATTCTCGTATGA+TGG 0.498424 7.4:-41572327 MS.gene055264:CDS
GATTGCTTAACTTTAACTGT+GGG 0.508677 7.4:+41572037 None:intergenic
TCTGTAGTGAAATACATAGT+TGG 0.513828 7.4:+41571829 None:intergenic
TACCGTTAACAAATCCTTGA+GGG 0.519784 7.4:+41572663 None:intergenic
AGTTGTCACTATTGGCATCA+AGG 0.520473 7.4:-41571719 MS.gene055264:CDS
AACAAGGTATTGTATGCTCA+AGG 0.521643 7.4:-41572249 MS.gene055264:CDS
TATCAAATGAGGCTAAGAAC+AGG 0.528682 7.4:-41572080 MS.gene055264:CDS
ATTCGAACAATTCCACCTAA+AGG 0.529035 7.4:+41572183 None:intergenic
AGAATAACCTTGAACTCTCA+AGG 0.530049 7.4:+41572337 None:intergenic
TAAATATTTGATATCAAATG+AGG 0.532390 7.4:-41572091 MS.gene055264:CDS
CCCTAGTTCCGTAAAAGAAG+TGG 0.532456 7.4:-41572546 MS.gene055264:CDS
CAAGGTATTGTATGCTCAAG+GGG 0.532821 7.4:-41572247 MS.gene055264:CDS
CTTGTTTGCAGAAGCAGGGA+AGG 0.539743 7.4:-41573058 MS.gene055264:CDS
AGAAGCCAAACCATTTGTTA+GGG 0.542692 7.4:+41571568 None:intergenic
AGGAAAGTTGGCATTGGACA+AGG 0.546490 7.4:-41571520 MS.gene055264:CDS
TTCCTTATACCTCTCCCTCA+AGG 0.549574 7.4:-41572677 MS.gene055264:CDS
AACCTTGAACTCTCAAGGGA+TGG 0.550398 7.4:+41572342 None:intergenic
ATATTACCAATTCTTGAACC+TGG 0.551456 7.4:-41572012 MS.gene055264:CDS
AATCTCGCAATTGTTCCTAA+AGG 0.554147 7.4:+41573000 None:intergenic
TTTAACTGTGGGGCAATGCA+AGG 0.554812 7.4:+41572048 None:intergenic
TTAACAAATCCTTGAGGGAG+AGG 0.564513 7.4:+41572668 None:intergenic
CCATGATATTCATGAACACC+AGG 0.566428 7.4:+41571994 None:intergenic
AATTGCGAGATTGGTAGAGA+AGG 0.568458 7.4:-41572989 MS.gene055264:CDS
GAAACTGAATTCATCTAATG+TGG 0.572074 7.4:-41571881 MS.gene055264:CDS
AAGTCTTGTTTGCAGAAGCA+GGG 0.574475 7.4:-41573062 MS.gene055264:CDS
TGTTCCTTTGGAAGCATCAG+CGG 0.578272 7.4:-41572147 MS.gene055264:CDS
CCTGGTGTTCATGAATATCA+TGG 0.582427 7.4:-41571994 MS.gene055264:CDS
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7.4:-41572975 MS.gene055264:CDS
AGCATAGGGCAAGTTACAGT+CGG 0.590026 7.4:-41572961 MS.gene055264:CDS
ACAAGGTATTGTATGCTCAA+GGG 0.592568 7.4:-41572248 MS.gene055264:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7.4:-41572976 MS.gene055264:CDS
TGAAGGTTGTTTCTCTACTG+AGG 0.594448 7.4:-41572899 MS.gene055264:CDS
AAAGCTGAAATTGGAGTCAG+TGG 0.596483 7.4:+41571790 None:intergenic
GAATAACCTTGAACTCTCAA+GGG 0.599568 7.4:+41572338 None:intergenic
AATGTGGTGAATCCTGTTGA+GGG 0.604472 7.4:-41571865 MS.gene055264:CDS
TAATGTGGTGAATCCTGTTG+AGG 0.605572 7.4:-41571866 MS.gene055264:CDS
TAACCCCTCTTATCTACACC+AGG 0.612555 7.4:+41571919 None:intergenic
TATAAGAAAATCAGATAACA+AGG 0.631180 7.4:-41572265 MS.gene055264:CDS
TGTATAGTCAATACAGTTTG+GGG 0.638877 7.4:+41572604 None:intergenic
TACTACTTCTACTCAAGCAG+AGG 0.643833 7.4:-41573127 MS.gene055264:CDS
ATACCGTTAACAAATCCTTG+AGG 0.650048 7.4:+41572662 None:intergenic
CAATCCGCTGATGCTTCCAA+AGG 0.653547 7.4:+41572143 None:intergenic
AAACTCACTCTATAGAAGTG+TGG 0.661607 7.4:-41572932 MS.gene055264:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.672765 7.4:-41572916 MS.gene055264:CDS
ATTGCTTAACTTTAACTGTG+GGG 0.673850 7.4:+41572038 None:intergenic
GAACATGTGAAGTACTTTGG+TGG 0.674394 7.4:+41572794 None:intergenic
AAACCTGGTGTAGATAAGAG+GGG 0.682651 7.4:-41571922 MS.gene055264:CDS
TGTCACTATTGGCATCAAGG+AGG 0.742676 7.4:-41571716 MS.gene055264:intron
GCTGCAACCAATCAACTCAG+CGG 0.749919 7.4:-41572860 MS.gene055264:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAAAAAATTAAGAG+AGG + chr7.4:41572195-41572214 None:intergenic 10.0%
!! TAAATATTTGATATCAAATG+AGG - chr7.4:41572555-41572574 MS.gene055264:CDS 15.0%
!! TGGTAATATTAATATTATTC+CGG - chr7.4:41572690-41572709 MS.gene055264:intron 15.0%
!! TATAAGAAAATCAGATAACA+AGG - chr7.4:41572381-41572400 MS.gene055264:CDS 20.0%
!!! TTTTCCATCAAATCATTAAT+CGG + chr7.4:41572907-41572926 None:intergenic 20.0%
! ATAGGAGCAAAAATTAAAGT+AGG + chr7.4:41571877-41571896 None:intergenic 25.0%
! TTGTATAGTCAATACAGTTT+GGG + chr7.4:41572046-41572065 None:intergenic 25.0%
! TTTCTTCCCTAAAAACAAAT+CGG + chr7.4:41572284-41572303 None:intergenic 25.0%
!! AAACTTCTTTTGAACGAAAA+TGG - chr7.4:41571556-41571575 MS.gene055264:CDS 25.0%
!! AGTTTTCTTACATTTCCTTT+AGG - chr7.4:41572448-41572467 MS.gene055264:intron 25.0%
!! CATTAATCGGAGTATTAAAT+CGG + chr7.4:41572894-41572913 None:intergenic 25.0%
!!! CATGGTTATTTTAAAAGTGT+TGG - chr7.4:41572670-41572689 MS.gene055264:CDS 25.0%
ATATTACCAATTCTTGAACC+TGG - chr7.4:41572634-41572653 MS.gene055264:CDS 30.0%
ATGGAAAAAGTTGTCACTAT+TGG - chr7.4:41572919-41572938 MS.gene055264:CDS 30.0%
ATTGCTTAACTTTAACTGTG+GGG + chr7.4:41572611-41572630 None:intergenic 30.0%
CTTGTATAGTCAATACAGTT+TGG + chr7.4:41572047-41572066 None:intergenic 30.0%
GAAACTGAATTCATCTAATG+TGG - chr7.4:41572765-41572784 MS.gene055264:intron 30.0%
GATAAACATAAATGTCGATG+TGG - chr7.4:41571924-41571943 MS.gene055264:CDS 30.0%
GATTGCTTAACTTTAACTGT+GGG + chr7.4:41572612-41572631 None:intergenic 30.0%
GTATTTCACTACAGATGATT+TGG - chr7.4:41572825-41572844 MS.gene055264:CDS 30.0%
TACTCCGATTAATGATTTGA+TGG - chr7.4:41572900-41572919 MS.gene055264:CDS 30.0%
TCTGAATCTCACTAAAGAAA+AGG - chr7.4:41572124-41572143 MS.gene055264:CDS 30.0%
TCTGTAGTGAAATACATAGT+TGG + chr7.4:41572820-41572839 None:intergenic 30.0%
TGATTGCTTAACTTTAACTG+TGG + chr7.4:41572613-41572632 None:intergenic 30.0%
TGTATAGTCAATACAGTTTG+GGG + chr7.4:41572045-41572064 None:intergenic 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.4:41571554-41571573 None:intergenic 30.0%
TTTCTTACATTTCCTTTAGG+TGG - chr7.4:41572451-41572470 MS.gene055264:intron 30.0%
! ATTCAGAACCACTTCTTTTA+CGG + chr7.4:41572111-41572130 None:intergenic 30.0%
! GTATGATGGTGAAATTGTTA+TGG - chr7.4:41572333-41572352 MS.gene055264:CDS 30.0%
!! TATCAAAGTCATTCTAAAGC+TGG - chr7.4:41572357-41572376 MS.gene055264:CDS 30.0%
AAACATAAATGTCGATGTGG+TGG - chr7.4:41571927-41571946 MS.gene055264:CDS 35.0%
AAACTCACTCTATAGAAGTG+TGG - chr7.4:41571714-41571733 MS.gene055264:intron 35.0%
AAGAAGCCAAACCATTTGTT+AGG + chr7.4:41573082-41573101 None:intergenic 35.0%
AATCTCGCAATTGTTCCTAA+AGG + chr7.4:41571649-41571668 None:intergenic 35.0%
AGAATAACCTTGAACTCTCA+AGG + chr7.4:41572312-41572331 None:intergenic 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7.4:41571631-41571650 MS.gene055264:intron 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.4:41572868-41572887 None:intergenic 35.0%
ATACCGTTAACAAATCCTTG+AGG + chr7.4:41571987-41572006 None:intergenic 35.0%
ATTCGAACAATTCCACCTAA+AGG + chr7.4:41572466-41572485 None:intergenic 35.0%
CCAGGTTTGAAAATTTGAAC+CGG + chr7.4:41572712-41572731 None:intergenic 35.0%
GAATAACCTTGAACTCTCAA+GGG + chr7.4:41572311-41572330 None:intergenic 35.0%
GGTGGAATTGTTCGAATATT+TGG - chr7.4:41572469-41572488 MS.gene055264:intron 35.0%
GTAGTGTCTTAGCATATTGA+AGG - chr7.4:41573034-41573053 MS.gene055264:CDS 35.0%
TACCGTTAACAAATCCTTGA+GGG + chr7.4:41571986-41572005 None:intergenic 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7.4:41571671-41571690 MS.gene055264:intron 35.0%
TATCAAATGAGGCTAAGAAC+AGG - chr7.4:41572566-41572585 MS.gene055264:CDS 35.0%
TCAAGGTTATTCTCGTATGA+TGG - chr7.4:41572319-41572338 MS.gene055264:CDS 35.0%
TTTAGGAACAATTGCGAGAT+TGG - chr7.4:41571648-41571667 MS.gene055264:intron 35.0%
TTTGGAGAGAATTGTTCCTT+TGG - chr7.4:41572487-41572506 MS.gene055264:intron 35.0%
! AGAAGCCAAACCATTTGTTA+GGG + chr7.4:41573081-41573100 None:intergenic 35.0%
! GTTGTGTGTTTCACGATTTT+TGG - chr7.4:41573103-41573122 MS.gene055264:CDS 35.0%
! TAGGAACATGTGAAGTACTT+TGG + chr7.4:41571858-41571877 None:intergenic 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7.4:41572397-41572416 MS.gene055264:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7.4:41572398-41572417 MS.gene055264:CDS 35.0%
!!! ACCTTGACCGATTTGTTTTT+AGG - chr7.4:41572274-41572293 MS.gene055264:CDS 35.0%
!!! CCTTGACCGATTTGTTTTTA+GGG - chr7.4:41572275-41572294 MS.gene055264:CDS 35.0%
AAACCTGGTGTAGATAAGAG+GGG - chr7.4:41572724-41572743 MS.gene055264:intron 40.0%
AAAGCTGAAATTGGAGTCAG+TGG + chr7.4:41572859-41572878 None:intergenic 40.0%
AATGTGGTGAATCCTGTTGA+GGG - chr7.4:41572781-41572800 MS.gene055264:intron 40.0%
AATTGCGAGATTGGTAGAGA+AGG - chr7.4:41571657-41571676 MS.gene055264:intron 40.0%
AGTTGTCACTATTGGCATCA+AGG - chr7.4:41572927-41572946 MS.gene055264:CDS 40.0%
ATCTGCCCTAACAAATGGTT+TGG - chr7.4:41573073-41573092 MS.gene055264:CDS 40.0%
CAAACCTGGTGTAGATAAGA+GGG - chr7.4:41572723-41572742 MS.gene055264:intron 40.0%
CCATGATATTCATGAACACC+AGG + chr7.4:41572655-41572674 None:intergenic 40.0%
CCCTAAAAACAAATCGGTCA+AGG + chr7.4:41572278-41572297 None:intergenic 40.0%
CCTGGTGTTCATGAATATCA+TGG - chr7.4:41572652-41572671 MS.gene055264:CDS 40.0%
CCTGTTGAGGGTTATGTTAA+GGG - chr7.4:41572793-41572812 MS.gene055264:intron 40.0%
CTGACTCCAATTTCAGCTTT+GGG - chr7.4:41572859-41572878 MS.gene055264:CDS 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7.4:41571670-41571689 MS.gene055264:intron 40.0%
TAATGTGGTGAATCCTGTTG+AGG - chr7.4:41572780-41572799 MS.gene055264:intron 40.0%
TACTACTTCTACTCAAGCAG+AGG - chr7.4:41571519-41571538 MS.gene055264:CDS 40.0%
TCAAACCTGGTGTAGATAAG+AGG - chr7.4:41572722-41572741 MS.gene055264:intron 40.0%
TCAACATCTGCCCTAACAAA+TGG - chr7.4:41573068-41573087 MS.gene055264:CDS 40.0%
TCCTGTTGAGGGTTATGTTA+AGG - chr7.4:41572792-41572811 MS.gene055264:intron 40.0%
TGAACACCAGGTTCAAGAAT+TGG + chr7.4:41572643-41572662 None:intergenic 40.0%
TGAAGTGATCATATCGCGAT+AGG + chr7.4:41571895-41571914 None:intergenic 40.0%
TTAACAAATCCTTGAGGGAG+AGG + chr7.4:41571981-41572000 None:intergenic 40.0%
TTTAGTCTGTTCCAGGAGTT+CGG - chr7.4:41572068-41572087 MS.gene055264:CDS 40.0%
! ACCACTTCTTTTACGGAACT+AGG + chr7.4:41572104-41572123 None:intergenic 40.0%
! ACTGACTCCAATTTCAGCTT+TGG - chr7.4:41572858-41572877 MS.gene055264:CDS 40.0%
! CCACTTCTTTTACGGAACTA+GGG + chr7.4:41572103-41572122 None:intergenic 40.0%
! CCGGTTCAAATTTTCAAACC+TGG - chr7.4:41572709-41572728 MS.gene055264:intron 40.0%
! GAACATGTGAAGTACTTTGG+TGG + chr7.4:41571855-41571874 None:intergenic 40.0%
! TACAAGCTTTAGTCTGTTCC+AGG - chr7.4:41572061-41572080 MS.gene055264:CDS 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.4:41571583-41571602 MS.gene055264:CDS 40.0%
!! AAGTCTTGTTTGCAGAAGCA+GGG - chr7.4:41571584-41571603 MS.gene055264:CDS 40.0%
!! CAAGGTATTGTATGCTCAAG+GGG - chr7.4:41572399-41572418 MS.gene055264:CDS 40.0%
!! CACGATTTTTGGAGGAAAGT+TGG - chr7.4:41573114-41573133 MS.gene055264:CDS 40.0%
!! CTCCCTCAAGGATTTGTTAA+CGG - chr7.4:41571981-41572000 MS.gene055264:CDS 40.0%
!! GTGTGTTTCACGATTTTTGG+AGG - chr7.4:41573106-41573125 MS.gene055264:CDS 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG + chr7.4:41571796-41571815 None:intergenic 40.0%
!! TGAAGGTTGTTTCTCTACTG+AGG - chr7.4:41571747-41571766 MS.gene055264:CDS 40.0%
!! TTTTGGAGGAAAGTTGGCAT+TGG - chr7.4:41573120-41573139 MS.gene055264:CDS 40.0%
AACCATCCCTTGAGAGTTCA+AGG - chr7.4:41572302-41572321 MS.gene055264:CDS 45.0%
AACCTTGAACTCTCAAGGGA+TGG + chr7.4:41572307-41572326 None:intergenic 45.0%
AGCATAGGGCAAGTTACAGT+CGG - chr7.4:41571685-41571704 MS.gene055264:intron 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7.4:41571730-41571749 MS.gene055264:CDS 45.0%
CAAATCGGTCAAGGTTGACT+TGG + chr7.4:41572269-41572288 None:intergenic 45.0%
CCCTAGTTCCGTAAAAGAAG+TGG - chr7.4:41572100-41572119 MS.gene055264:CDS 45.0%
CCCTTAACATAACCCTCAAC+AGG + chr7.4:41572796-41572815 None:intergenic 45.0%
GTAGATAAGAGGGGTTATGC+TGG - chr7.4:41572733-41572752 MS.gene055264:intron 45.0%
TAACCCCTCTTATCTACACC+AGG + chr7.4:41572730-41572749 None:intergenic 45.0%
TGTCACTATTGGCATCAAGG+AGG - chr7.4:41572930-41572949 MS.gene055264:CDS 45.0%
TTCCTTATACCTCTCCCTCA+AGG - chr7.4:41571969-41571988 MS.gene055264:CDS 45.0%
TTTAACTGTGGGGCAATGCA+AGG + chr7.4:41572601-41572620 None:intergenic 45.0%
! AGGAAAGTTGGCATTGGACA+AGG - chr7.4:41573126-41573145 MS.gene055264:CDS 45.0%
! ATCCTTGAGGGAGAGGTATA+AGG + chr7.4:41571974-41571993 None:intergenic 45.0%
! GGGAGAGGTATAAGGAAAAC+TGG + chr7.4:41571966-41571985 None:intergenic 45.0%
!! TGTTCCTTTGGAAGCATCAG+CGG - chr7.4:41572499-41572518 MS.gene055264:intron 45.0%
!!! GGTTTTTTATGCCGAACTCC+TGG + chr7.4:41572082-41572101 None:intergenic 45.0%
!!! ATAATATTATTGTTTTATAT+AGG - chr7.4:41572213-41572232 MS.gene055264:CDS 5.0%
CAATCCGCTGATGCTTCCAA+AGG + chr7.4:41572506-41572525 None:intergenic 50.0%
CTTGTTTGCAGAAGCAGGGA+AGG - chr7.4:41571588-41571607 MS.gene055264:CDS 50.0%
GCTGCAACCAATCAACTCAG+CGG - chr7.4:41571786-41571805 MS.gene055264:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 41571511 41573157 41571511 ID=MS.gene055264
chr7.4 mRNA 41571511 41573157 41571511 ID=MS.gene055264.t1;Parent=MS.gene055264
chr7.4 exon 41572809 41573157 41572809 ID=MS.gene055264.t1.exon1;Parent=MS.gene055264.t1
chr7.4 CDS 41572809 41573157 41572809 ID=cds.MS.gene055264.t1;Parent=MS.gene055264.t1
chr7.4 exon 41572523 41572701 41572523 ID=MS.gene055264.t1.exon2;Parent=MS.gene055264.t1
chr7.4 CDS 41572523 41572701 41572523 ID=cds.MS.gene055264.t1;Parent=MS.gene055264.t1
chr7.4 exon 41571717 41572433 41571717 ID=MS.gene055264.t1.exon3;Parent=MS.gene055264.t1
chr7.4 CDS 41571717 41572433 41571717 ID=cds.MS.gene055264.t1;Parent=MS.gene055264.t1
chr7.4 exon 41571511 41571630 41571511 ID=MS.gene055264.t1.exon4;Parent=MS.gene055264.t1
chr7.4 CDS 41571511 41571630 41571511 ID=cds.MS.gene055264.t1;Parent=MS.gene055264.t1
Gene Sequence

>MS.gene055264

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCATTTGTCCTTGAAACTTCTTTTGAACGAAAATGGTAACAAAGTCTTGTTTGCAGAAGCAGGGAAGGACTTTGTTGACATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACAATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAGAAGTGTGGCAGATCTTGATGAAGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATGCGACACTCTTAAACTCAACATTGATGACAATCAACCACCAAAGTACTTCACATGTTCCTACTTTAATTTTTGCTCCTATCGCGATATGATCACTTCAACGTATAAAGATAAACATAAATGTCGATGTGGTGGTTCTTTTACACTTCCAGTTTTCCTTATACCTCTCCCTCAAGGATTTGTTAACGGTATAGCTACTTATGTCATAAGTGATGATCTGATTGTCACCCCAAACTGTATTGACTATACAAGCTTTAGTCTGTTCCAGGAGTTCGGCATAAAAAACCCTAGTTCCGTAAAAGAAGTGGTTCTGAATCTCACTAAAGAAAAGGTTTTGTATTTGAATATCACTGTTGTTTATAACTTCTATACAAACACCTCTCTTAATTTTTTTATTTATAATATTATTGTTTTATATAGGTACTTGATTTGCTAAAGTGTTCTTTGCTTTCCAAGTCAACCTTGACCGATTTGTTTTTAGGGAAGAAACCATCCCTTGAGAGTTCAAGGTTATTCTCGTATGATGGTGAAATTGTTATGGATATCAAAGTCATTCTAAAGCTGGTTATAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGGAACAAGATTTTGCGAACTTACTTTTAAGTTTTCTTACATTTCCTTTAGGTGGAATTGTTCGAATATTTGGAGAGAATTGTTCCTTTGGAAGCATCAGCGGATTGTACAAGAGTATAGTTGAGCTGAATGAAAATAAATATTTGATATCAAATGAGGCTAAGAACAGGCTTGTTGATCCTTGCATTGCCCCACAGTTAAAGTTAAGCAATCAGATATTACCAATTCTTGAACCTGGTGTTCATGAATATCATGGTTATTTTAAAAGTGTTGGTAATATTAATATTATTCCGGTTCAAATTTTCAAACCTGGTGTAGATAAGAGGGGTTATGCTGGAAATTTTAAGAAACTGAATTCATCTAATGTGGTGAATCCTGTTGAGGGTTATGTTAAGGGTCCAACTATGTATTTCACTACAGATGATTTGGTTGTAGCACCACTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTTAATACTCCGATTAATGATTTGATGGAAAAAGTTGTCACTATTGGCATCAAGGAGGTAAATGCATAGTAAAATTCTTAATATAGTTTTAATCTTTACATTATTTATAAATTGCTTATGTTTATCTTCTTGTCTTGTTGTAGTGTCTTAGCATATTGAAGGCTTCTTTGACATCAACATCTGCCCTAACAAATGGTTTGGCTTCTTTGTTGTGTGTTTCACGATTTTTGGAGGAAAGTTGGCATTGGACAAGGAGACAATAA
Protein sequence

>MS.gene055264.t1

MAATTSTQAEEHLSLKLLLNENGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQVTVGCLNSLYRSVADLDEGCFSTEAIKQMLLQPINSAEDYATLLNSTLMTINHQIFLIPLPQGFVNGIATYVISDDLIVTPNCIDYTSFSLFQEFGIKNPSSVKEVVLNLTKEKVLDLLKCSLLSKSTLTDLFLGKKPSLESSRLFSYDGEIVMDIKVILKLVIRKSDNKVLYAQGEQDFANLLLSFLTFPLGGIVRIFGENCSFGSISGLYKSIVELNENKYLISNEAKNRLVDPCIAPQLKLSNQILPILEPGVHEYHGYFKSVGNINIIPVQIFKPGVDKRGYAGNFKKLNSSNVVNPVEGYVKGPTMYFTTDDLVVAPLTPISALGLLNRFNTPINDLMEKVVTIGIKECLSILKASLTSTSALTNGLASLLCVSRFLEESWHWTRRQ