AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene73259

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73259.t1 MTR_4g019340 81.429 490 30 4 8 459 37 503 0.0 764
MS.gene73259.t1 MTR_4g017830 70.755 530 116 5 3 498 6 530 0.0 722
MS.gene73259.t1 MTR_4g017440 63.690 504 145 7 3 473 8 506 0.0 600
MS.gene73259.t1 MTR_4g017410 59.152 519 145 8 1 478 1 493 0.0 567
MS.gene73259.t1 MTR_4g017470 60.692 491 168 7 1 478 1 479 0.0 540
MS.gene73259.t1 MTR_4g017550 60.297 471 135 10 36 469 18 473 0.0 519
MS.gene73259.t1 MTR_4g017610 55.332 497 158 10 4 465 8 475 6.63e-175 501
MS.gene73259.t1 MTR_4g019310 42.126 508 229 19 1 465 1 486 9.85e-106 325
MS.gene73259.t1 MTR_7g066260 31.970 538 269 12 3 498 9 491 8.87e-73 239
MS.gene73259.t1 MTR_7g066340 32.336 535 260 14 2 498 5 475 7.69e-72 236
MS.gene73259.t1 MTR_7g066410 33.271 538 258 17 5 471 7 514 1.88e-69 231
MS.gene73259.t1 MTR_7g066570 34.783 506 266 15 3 473 8 484 2.10e-69 232
MS.gene73259.t1 MTR_7g066350 33.204 515 241 15 1 471 1 456 4.81e-68 226
MS.gene73259.t1 MTR_7g058710 30.651 522 276 11 1 475 1 483 1.17e-67 225
MS.gene73259.t1 MTR_7g066430 34.000 500 271 10 10 469 5 485 1.06e-66 223
MS.gene73259.t1 MTR_7g066310 32.735 501 222 15 10 498 8 405 6.19e-66 218
MS.gene73259.t1 MTR_7g066310 33.071 127 77 3 236 355 7 132 1.49e-12 69.7
MS.gene73259.t1 MTR_7g012680 33.809 491 256 13 3 473 8 449 3.06e-65 218
MS.gene73259.t1 MTR_7g012680 27.444 266 144 9 224 478 2 229 1.91e-14 75.9
MS.gene73259.t1 MTR_7g066580 32.238 487 252 13 15 469 1 441 4.37e-63 212
MS.gene73259.t1 MTR_7g066400 32.535 501 229 14 2 465 5 433 4.30e-62 209
MS.gene73259.t1 MTR_1g041315 32.200 500 230 18 5 453 10 451 4.14e-59 203
MS.gene73259.t1 MTR_7g063660 31.115 511 282 13 1 475 1 477 2.98e-58 200
MS.gene73259.t1 MTR_7g062280 32.755 519 258 16 10 475 11 491 7.95e-58 199
MS.gene73259.t1 MTR_7g066360 31.273 534 268 13 3 499 8 479 6.99e-56 194
MS.gene73259.t1 MTR_7g063880 31.089 505 259 14 10 474 12 467 5.76e-55 191
MS.gene73259.t1 MTR_7g063880 29.218 243 128 10 236 462 11 225 6.67e-13 71.2
MS.gene73259.t1 MTR_7g062300 32.283 508 261 16 3 468 6 472 1.88e-54 190
MS.gene73259.t1 MTR_7g063840 30.040 506 285 11 3 475 4 473 1.65e-53 187
MS.gene73259.t1 MTR_7g063920 32.495 477 259 15 10 475 12 436 3.47e-53 186
MS.gene73259.t1 MTR_2g029400 30.753 465 247 10 1 457 6 403 1.64e-52 183
MS.gene73259.t1 MTR_7g063900 31.881 505 282 12 2 469 3 482 4.20e-52 184
MS.gene73259.t1 MTR_4g019240 76.471 119 22 3 4 121 8 121 1.25e-51 174
MS.gene73259.t1 MTR_4g019240 87.324 71 9 0 427 497 112 182 2.40e-30 117
MS.gene73259.t1 MTR_7g066290 32.973 370 186 8 3 327 9 361 9.61e-49 174
MS.gene73259.t1 MTR_7g066290 26.250 240 142 7 223 448 2 220 2.45e-11 66.2
MS.gene73259.t1 MTR_7g063820 31.346 520 276 16 1 475 1 484 6.33e-45 164
MS.gene73259.t1 MTR_1g014060 31.398 465 217 17 18 469 9 384 4.43e-43 157
MS.gene73259.t1 MTR_7g063890 29.490 529 278 16 1 476 19 505 2.35e-42 158
MS.gene73259.t1 MTR_7g063830 28.711 512 260 14 1 475 1 444 3.74e-41 153
MS.gene73259.t1 MTR_7g063670 29.550 511 250 17 8 475 14 457 2.62e-40 151
MS.gene73259.t1 MTR_7g066480 33.811 349 173 10 10 319 17 346 4.42e-38 144
MS.gene73259.t1 MTR_7g066490 33.233 331 185 9 10 319 17 332 4.60e-36 139
MS.gene73259.t1 MTR_3g007740 27.944 501 270 14 1 469 1 442 4.20e-35 136
MS.gene73259.t1 MTR_3g065200 26.327 490 247 13 10 463 4 415 2.30e-34 135
MS.gene73259.t1 MTR_7g058700 32.537 335 161 12 21 318 531 837 3.11e-34 137
MS.gene73259.t1 MTR_7g066280 28.935 432 256 14 98 498 1 412 3.29e-33 130
MS.gene73259.t1 MTR_7g066680 31.366 322 161 8 184 465 33 334 8.21e-28 114
MS.gene73259.t1 MTR_7g063720 31.276 243 131 4 235 474 22 231 9.87e-24 100
MS.gene73259.t1 MTR_4g019350 52.475 101 35 3 294 393 1 89 2.81e-23 94.4
MS.gene73259.t1 MTR_8g445860 28.968 252 123 6 236 463 13 232 3.91e-21 92.8
MS.gene73259.t1 MTR_8g445860 33.607 122 64 2 10 129 14 120 1.18e-11 65.1
MS.gene73259.t1 MTR_7g100420 33.214 280 165 6 188 465 134 393 2.70e-20 93.2
MS.gene73259.t1 MTR_1g115440 31.535 241 134 8 236 463 11 233 3.49e-20 90.1
MS.gene73259.t1 MTR_1g115440 26.400 250 126 6 2 209 4 237 6.92e-15 74.7
MS.gene73259.t1 MTR_7g063850 30.924 249 141 9 234 475 64 288 7.25e-20 90.5
MS.gene73259.t1 MTR_0150s0010 32.203 236 139 7 236 463 10 232 2.75e-19 87.4
MS.gene73259.t1 MTR_0150s0010 36.449 107 53 1 2 108 3 94 9.95e-13 68.2
MS.gene73259.t1 MTR_7g062270 40.299 134 68 3 1 133 1 123 5.55e-19 89.4
MS.gene73259.t1 MTR_8g023240 24.625 333 208 10 9 315 37 352 9.70e-15 77.0
MS.gene73259.t1 MTR_1g115455 33.835 133 69 2 1 129 1 118 1.63e-14 73.6
MS.gene73259.t1 MTR_1g115455 37.975 79 47 1 236 312 9 87 4.85e-11 63.2
MS.gene73259.t1 MTR_0150s0030 35.294 102 57 2 236 334 8 103 9.54e-14 70.5
MS.gene73259.t1 MTR_7g066390 43.137 102 55 2 397 498 50 148 1.09e-13 69.3
MS.gene73259.t1 MTR_8g445910 36.275 102 56 2 236 334 8 103 1.59e-13 71.2
MS.gene73259.t1 MTR_1g115450 40.506 79 45 1 236 312 7 85 8.56e-13 66.2
MS.gene73259.t1 MTR_1g115450 35.345 116 60 1 10 125 8 108 1.78e-12 65.1
MS.gene73259.t1 MTR_8g044880 36.275 102 56 2 236 334 8 103 9.51e-13 68.9
MS.gene73259.t1 MTR_6g006800 56.897 58 15 2 1 56 1 50 5.59e-12 61.6
MS.gene73259.t1 MTR_8g445920 40.909 66 39 0 236 301 10 75 1.89e-11 61.2
MS.gene73259.t1 MTR_8g044890 40.909 66 39 0 236 301 10 75 1.89e-11 61.2
MS.gene73259.t1 MTR_4g019330 44.318 88 46 3 390 475 102 188 4.45e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene73259.t1 AT5G01130 29.757 494 261 14 3 466 4 441 1.19e-51 182
MS.gene73259.t1 AT5G01120 29.455 550 293 17 1 498 1 507 4.89e-50 179
MS.gene73259.t1 AT3G09140 30.056 539 253 16 1 465 1 489 1.30e-49 177
MS.gene73259.t1 AT5G43240 30.443 519 259 17 10 465 10 489 1.51e-46 169
MS.gene73259.t1 AT5G43240 30.443 519 259 17 10 465 10 489 1.51e-46 169
MS.gene73259.t1 AT5G43240 30.443 519 259 17 10 465 10 489 1.51e-46 169
MS.gene73259.t1 AT3G09140 28.571 567 253 17 1 465 1 517 1.52e-44 164
MS.gene73259.t1 AT5G01150 27.491 542 302 15 3 498 4 500 3.82e-43 160
MS.gene73259.t1 AT5G01140 29.644 533 274 17 3 498 4 472 1.07e-42 158
MS.gene73259.t1 AT3G09110 32.132 333 175 8 1 297 1 318 5.50e-42 153
MS.gene73259.t1 AT5G37320 27.756 508 271 17 16 471 18 481 1.20e-37 144
MS.gene73259.t1 AT3G09120 31.231 333 166 9 1 290 1 313 6.37e-36 136
MS.gene73259.t1 AT3G09120 29.958 237 144 9 236 463 6 229 1.81e-14 74.7
MS.gene73259.t1 AT5G43240 29.595 321 179 10 165 465 52 345 2.52e-20 93.2

Find 100 sgRNAs with CRISPR-Local

Find 305 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATAAACAGCCTAATAATT+TGG 0.213343 4.1:+78954321 MS.gene73259:CDS
GTCAAATTTGAATCTTGTTT+TGG 0.263154 4.1:-78958198 None:intergenic
ATAACTCAGTCTTCTAGTTT+AGG 0.304871 4.1:-78958267 None:intergenic
TTGCACCCACGACATTAAAA+TGG 0.305874 4.1:+78956878 MS.gene73259:CDS
CCACTCACTACATATTATTA+TGG 0.320058 4.1:+78957185 MS.gene73259:CDS
ATGCAGATATTGGTGGAATC+AGG 0.322458 4.1:+78954457 MS.gene73259:intron
GAGTATAATTCTAGTTGTTA+TGG 0.330401 4.1:+78957227 MS.gene73259:CDS
CCCTCACTCCAAACGATGTT+TGG 0.334877 4.1:+78954125 MS.gene73259:CDS
TTCTGATTTGAGTCAATTAC+AGG 0.342522 4.1:+78954483 MS.gene73259:CDS
AGGGTCCATTGTAAAGGTTT+TGG 0.343635 4.1:+78957001 MS.gene73259:CDS
AATGATTCACATGGATTCTT+CGG 0.347163 4.1:-78954178 None:intergenic
GAGAGTGTCAACAAAGTCTT+TGG 0.349073 4.1:-78953960 None:intergenic
AGCTTCCTTACAATACCATT+AGG 0.351633 4.1:+78956981 MS.gene73259:CDS
CACACACAACTTTGGAAAAC+AGG 0.361346 4.1:+78954510 MS.gene73259:CDS
ACTGCTGATGCAAACTGGTT+TGG 0.367245 4.1:-78956843 None:intergenic
AGCAAAAGCCTTGACTGAAA+TGG 0.377248 4.1:+78957316 MS.gene73259:CDS
CTCTCAGGATCCAAATTATT+AGG 0.379415 4.1:-78954331 None:intergenic
GCTTCCTTACAATACCATTA+GGG 0.381396 4.1:+78956982 MS.gene73259:CDS
CATCGTTGTTTGTGGTTAAG+AGG 0.384127 4.1:-78954021 None:intergenic
CTTTGACTGCTGATGCAAAC+TGG 0.388699 4.1:-78956848 None:intergenic
TAATTTGGATCCTGAGAGTC+AGG 0.390208 4.1:+78954336 MS.gene73259:CDS
GGAATGTTGAGGGGCTGGTT+TGG 0.395287 4.1:-78957149 None:intergenic
ACCTCATTCCCCTGACTCTC+AGG 0.398399 4.1:-78954346 None:intergenic
ACAGGGTTCCAAACATCGTT+TGG 0.403560 4.1:-78954133 None:intergenic
CTAGAATTATACTCTTGCTT+TGG 0.408042 4.1:-78957218 None:intergenic
CAGAGGCTCATGAGAGGTTA+AGG 0.420057 4.1:-78956775 None:intergenic
AACGGTAGAATTAAAGATAG+AGG 0.436841 4.1:+78957256 MS.gene73259:CDS
CAGGAAGTCACACACAACTT+TGG 0.438918 4.1:+78954502 MS.gene73259:CDS
CAGAATCTTGATTGTACTTG+TGG 0.438965 4.1:+78954289 MS.gene73259:CDS
ACTAGTTTGAACACACTTTG+AGG 0.444744 4.1:-78958220 None:intergenic
ATTATTAGGCTGTTTATTAG+TGG 0.447282 4.1:-78954317 None:intergenic
ACCATTAGGGTCCATTGTAA+AGG 0.460196 4.1:+78956995 MS.gene73259:CDS
CGCTCCATGTTACTCAATCC+TGG 0.462371 4.1:+78957104 MS.gene73259:CDS
AGCAACATTTGTTTGCAGAC+AGG 0.463660 4.1:-78954151 None:intergenic
TTGTTGATCATCGTTGTTTG+TGG 0.468086 4.1:-78954029 None:intergenic
GCAACATTTGTTTGCAGACA+GGG 0.472548 4.1:-78954150 None:intergenic
CCAAACATCGTTTGGAGTGA+GGG 0.474902 4.1:-78954125 None:intergenic
ACCTTTACAATGGACCCTAA+TGG 0.477568 4.1:-78956996 None:intergenic
TTATTAGGCTGTTTATTAGT+GGG 0.484521 4.1:-78954316 None:intergenic
CATGAGGAATGTTGAGGGGC+TGG 0.489637 4.1:-78957154 None:intergenic
GCTGATGCAAACTGGTTTGG+CGG 0.490283 4.1:-78956840 None:intergenic
CAAAGTGTGTTCAAACTAGT+AGG 0.500953 4.1:+78958223 MS.gene73259:CDS
GTACAAGAGTGTAGAGAGCT+TGG 0.505497 4.1:+78957058 MS.gene73259:CDS
TCTTGGGTCCATTTCAGTCA+AGG 0.507464 4.1:-78957324 None:intergenic
TGGTGGCGAGTGGAAGAGAA+AGG 0.511396 4.1:-78953991 None:intergenic
ACTACATATTATTATGGTAC+AGG 0.518635 4.1:+78957191 MS.gene73259:CDS
TTCAAAATTGTATTTGTCAG+AGG 0.520812 4.1:-78956792 None:intergenic
TGAATATTGATGACACTGAA+TGG 0.522820 4.1:+78954218 MS.gene73259:CDS
TTAATTCTTTCAAATATGAA+AGG 0.523699 4.1:-78957451 None:intergenic
TGGACCCTAATGGTATTGTA+AGG 0.526033 4.1:-78956986 None:intergenic
TCAAAGTGTGGTGCGACACC+AGG 0.529733 4.1:-78957122 None:intergenic
AGGCAAGAATTAGCAGAAAG+TGG 0.533853 4.1:-78957431 None:intergenic
TGTGGTTAAGAGGCGAATGA+TGG 0.534640 4.1:-78954011 None:intergenic
TCCTGAGAGTCAGGGGAATG+AGG 0.534729 4.1:+78954345 MS.gene73259:CDS
CCTTGTTGATCTTGAAGTGA+AGG 0.535507 4.1:+78957481 MS.gene73259:CDS
TGCAGATATTGGTGGAATCA+GGG 0.535787 4.1:+78954458 MS.gene73259:intron
TCAAAATTTACACTGACTAG+TGG 0.539589 4.1:+78958153 MS.gene73259:CDS
GAGGAATGATGTTGATTCTG+AGG 0.541322 4.1:-78954068 None:intergenic
CTGATGCAAACTGGTTTGGC+GGG 0.543289 4.1:-78956839 None:intergenic
CTTCAAGATCAACAAGGGGA+AGG 0.544062 4.1:-78957475 None:intergenic
ATTTACACTGACTAGTGGAC+TGG 0.547720 4.1:+78958158 MS.gene73259:CDS
TAGAGAGCTTGGACTCTTCG+TGG 0.547747 4.1:+78957069 MS.gene73259:CDS
TCCAAACATCGTTTGGAGTG+AGG 0.557226 4.1:-78954126 None:intergenic
GGAGTGATTTCTAAGTCGCA+TGG 0.571812 4.1:+78957281 MS.gene73259:CDS
TAGTTGTTATGGTTATCAAA+CGG 0.579220 4.1:+78957238 MS.gene73259:CDS
GTAGAATTAAAGATAGAGGG+AGG 0.580072 4.1:+78957260 MS.gene73259:CDS
ACGGTAGAATTAAAGATAGA+GGG 0.581849 4.1:+78957257 MS.gene73259:CDS
ACCATCCAAAACCTTTACAA+TGG 0.583435 4.1:-78957006 None:intergenic
TCTCCTACACTATATAATGC+CGG 0.585136 4.1:-78957392 None:intergenic
TCAGAATCAACATCATTCCT+CGG 0.586673 4.1:+78954070 MS.gene73259:CDS
GAAGTCAACAAAGTTTCCAC+TGG 0.587458 4.1:-78956952 None:intergenic
GACTTCCATGCAGATATTGG+TGG 0.595400 4.1:+78954450 MS.gene73259:intron
CCTTCACTTCAAGATCAACA+AGG 0.610416 4.1:-78957481 None:intergenic
AGGTTAAGGTGTACTTGAGG+AGG 0.616375 4.1:-78956761 None:intergenic
TTCTTGCATAATGATTCACA+TGG 0.617558 4.1:-78954187 None:intergenic
ATGTACATGAGGAATGTTGA+GGG 0.622021 4.1:-78957159 None:intergenic
AGGCGAATGATGGTGGCGAG+TGG 0.622630 4.1:-78954001 None:intergenic
AATTTGGATCCTGAGAGTCA+GGG 0.626747 4.1:+78954337 MS.gene73259:CDS
GTGAGTGGTGGATGTACATG+AGG 0.635076 4.1:-78957170 None:intergenic
ATTTGGATCCTGAGAGTCAG+GGG 0.635129 4.1:+78954338 MS.gene73259:CDS
GGGTTTGTACGCTTTCATAG+AGG 0.642551 4.1:-78954105 None:intergenic
TTGATGTCAAGGAAGCTGCA+AGG 0.648287 4.1:-78958134 None:intergenic
GGTGGGATTTGTGAAGAGAC+CGG 0.651602 4.1:+78957373 MS.gene73259:CDS
CTTCACTTCAAGATCAACAA+GGG 0.654366 4.1:-78957480 None:intergenic
GAAGTGAAGGTGATATGCAT+TGG 0.654807 4.1:+78957494 MS.gene73259:CDS
TAATAATATGTAGTGAGTGG+TGG 0.656097 4.1:-78957182 None:intergenic
AGACCGGCATTATATAGTGT+AGG 0.657855 4.1:+78957389 MS.gene73259:CDS
TGGTTTGGACAATCAAAGTG+TGG 0.662188 4.1:-78957134 None:intergenic
GAGAGGTTAAGGTGTACTTG+AGG 0.667782 4.1:-78956764 None:intergenic
ATAATCTGTGCAGAAGCCAG+TGG 0.673897 4.1:+78956936 MS.gene73259:CDS
ATTTGTCAGAGGCTCATGAG+AGG 0.675408 4.1:-78956781 None:intergenic
TTCACTTCAAGATCAACAAG+GGG 0.676098 4.1:-78957479 None:intergenic
GATGTACATGAGGAATGTTG+AGG 0.679220 4.1:-78957160 None:intergenic
ACACAACTTTGGAAAACAGG+AGG 0.691626 4.1:+78954513 MS.gene73259:CDS
GGTTAAGAGGCGAATGATGG+TGG 0.700313 4.1:-78954008 None:intergenic
GATATGCATTGGTGAAGCTG+AGG 0.712892 4.1:+78957505 MS.gene73259:CDS
ATGTCAAGGAAGCTGCAAGG+AGG 0.721178 4.1:-78958131 None:intergenic
CCATAATAATATGTAGTGAG+TGG 0.727149 4.1:-78957185 None:intergenic
GACACCAGGATTGAGTAACA+TGG 0.730789 4.1:-78957108 None:intergenic
TGTACATGAGGAATGTTGAG+GGG 0.757600 4.1:-78957158 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTAAAAGAATGTTATAT+TGG + chr4.1:78956670-78956689 MS.gene73259:intron 10.0%
!!! CAATTTATTTTTTTAAAACT+CGG - chr4.1:78954927-78954946 None:intergenic 10.0%
!!! TTTTAAAAGAATGTTATATT+GGG + chr4.1:78956671-78956690 MS.gene73259:intron 10.0%
!! GAAATAATATGTTTAGATAT+AGG + chr4.1:78957894-78957913 MS.gene73259:intron 15.0%
!! TAATAAAATTATTGGACTTA+TGG - chr4.1:78957716-78957735 None:intergenic 15.0%
!! TCAAAATAACTAATGAATAA+TGG + chr4.1:78955300-78955319 MS.gene73259:intron 15.0%
!! TTAATTCTTTCAAATATGAA+AGG - chr4.1:78957454-78957473 None:intergenic 15.0%
!! TTTAAAAGAATGTTATATTG+GGG + chr4.1:78956672-78956691 MS.gene73259:intron 15.0%
!!! ACATCTTTTTTTAATTTGTT+GGG - chr4.1:78957353-78957372 None:intergenic 15.0%
!!! TTTATAACTTTCGTTTTTTA+GGG + chr4.1:78955468-78955487 MS.gene73259:intron 15.0%
!! AAATTAAAAAAAGATGTGGT+GGG + chr4.1:78957356-78957375 MS.gene73259:CDS 20.0%
!! AATATGTTTAGATATAGGTT+GGG + chr4.1:78957899-78957918 MS.gene73259:intron 20.0%
!! AATTCAATACCTCAAATTAT+AGG - chr4.1:78955377-78955396 None:intergenic 20.0%
!! ATACAAGATATTAAACCAAA+CGG - chr4.1:78956617-78956636 None:intergenic 20.0%
!! ATAGAGTACAATAGATTTAA+GGG - chr4.1:78955757-78955776 None:intergenic 20.0%
!! ATTAGTTCGATAACTAAATA+AGG - chr4.1:78955951-78955970 None:intergenic 20.0%
!! CAACAAATTAAAAAAAGATG+TGG + chr4.1:78957352-78957371 MS.gene73259:CDS 20.0%
!! CAGAATAATTAGTGTAAAAA+TGG - chr4.1:78956055-78956074 None:intergenic 20.0%
!! TAATAAACAGCCTAATAATT+TGG + chr4.1:78954321-78954340 MS.gene73259:CDS 20.0%
!! TAATATGTTTAGATATAGGT+TGG + chr4.1:78957898-78957917 MS.gene73259:intron 20.0%
!! TAGTTGTTGTACTTAAATTA+CGG + chr4.1:78956239-78956258 MS.gene73259:intron 20.0%
!! TTAGACAACAAATAAACAAA+AGG - chr4.1:78957568-78957587 None:intergenic 20.0%
!! TTAGTTCGATAACTAAATAA+GGG - chr4.1:78955950-78955969 None:intergenic 20.0%
!!! ATCTTTTTTTAATTTGTTGG+GGG - chr4.1:78957351-78957370 None:intergenic 20.0%
!!! CACAGTTTCAAATATTTTTT+CGG - chr4.1:78954965-78954984 None:intergenic 20.0%
!!! CACATCTTTTTTTAATTTGT+TGG - chr4.1:78957354-78957373 None:intergenic 20.0%
!!! CATCTTTTTTTAATTTGTTG+GGG - chr4.1:78957352-78957371 None:intergenic 20.0%
!!! CTTTATAACTTTCGTTTTTT+AGG + chr4.1:78955467-78955486 MS.gene73259:intron 20.0%
!!! TATAATTTGAGGTATTGAAT+TGG + chr4.1:78955376-78955395 MS.gene73259:intron 20.0%
!!! TTGTTATTGTAGTAAAATGA+GGG + chr4.1:78955032-78955051 MS.gene73259:intron 20.0%
! AAACATTCACAATGTTATGA+TGG + chr4.1:78956203-78956222 MS.gene73259:intron 25.0%
! AAATTATTGGACTTATGGAA+AGG - chr4.1:78957711-78957730 None:intergenic 25.0%
! AATAGAAAGTGATAAACTCT+AGG - chr4.1:78955668-78955687 None:intergenic 25.0%
! ACTACATATTATTATGGTAC+AGG + chr4.1:78957191-78957210 MS.gene73259:CDS 25.0%
! AGAAAAAGATTTAACCTTCA+AGG + chr4.1:78955852-78955871 MS.gene73259:intron 25.0%
! ATAACTAAATAAGGGATGTA+AGG - chr4.1:78955942-78955961 None:intergenic 25.0%
! ATCATCTGTTAAGAATAGAA+AGG + chr4.1:78955508-78955527 MS.gene73259:intron 25.0%
! ATTATTAGGCTGTTTATTAG+TGG - chr4.1:78954320-78954339 None:intergenic 25.0%
! CAAATTAAAAAAAGATGTGG+TGG + chr4.1:78957355-78957374 MS.gene73259:CDS 25.0%
! CATTTGTATGTATGTTATCT+TGG + chr4.1:78956696-78956715 MS.gene73259:intron 25.0%
! GAAAAAGATTTAACCTTCAA+GGG + chr4.1:78955853-78955872 MS.gene73259:intron 25.0%
! GATAGAGTACAATAGATTTA+AGG - chr4.1:78955758-78955777 None:intergenic 25.0%
! TAACAATGTCCTATAATTTG+AGG + chr4.1:78955365-78955384 MS.gene73259:intron 25.0%
! TAACTAAATAAGGGATGTAA+GGG - chr4.1:78955941-78955960 None:intergenic 25.0%
! TAAGAATAGAAAGGAAAGTA+AGG + chr4.1:78955517-78955536 MS.gene73259:intron 25.0%
! TAATTTGAGTGAAGAGTTAA+AGG + chr4.1:78956491-78956510 MS.gene73259:intron 25.0%
! TACAAACATGTTATGAAACA+CGG - chr4.1:78954728-78954747 None:intergenic 25.0%
! TAGTGTACCATAAATGAAAA+GGG + chr4.1:78956165-78956184 MS.gene73259:intron 25.0%
! TAGTTGTTATGGTTATCAAA+CGG + chr4.1:78957238-78957257 MS.gene73259:CDS 25.0%
! TATAAAAAATGTAGTGTACC+TGG - chr4.1:78957819-78957838 None:intergenic 25.0%
! TATCAATTAGGAACAATTTG+AGG - chr4.1:78955997-78956016 None:intergenic 25.0%
! TTAGTGTACCATAAATGAAA+AGG + chr4.1:78956164-78956183 MS.gene73259:intron 25.0%
! TTATTAGGCTGTTTATTAGT+GGG - chr4.1:78954319-78954338 None:intergenic 25.0%
! TTCAAAATTGTATTTGTCAG+AGG - chr4.1:78956795-78956814 None:intergenic 25.0%
!! ATGTTTTCCCTTTTCATTTA+TGG - chr4.1:78956175-78956194 None:intergenic 25.0%
!! CTCATTTTACTACAATAACA+AGG - chr4.1:78955033-78955052 None:intergenic 25.0%
!! GAAGGTTAAATCTTTTTCTT+TGG - chr4.1:78955851-78955870 None:intergenic 25.0%
!! GAGTATAATTCTAGTTGTTA+TGG + chr4.1:78957227-78957246 MS.gene73259:CDS 25.0%
!! TGAATCATTGTTCTAAATTG+TGG + chr4.1:78954983-78955002 MS.gene73259:intron 25.0%
!!! CTTGTTATTGTAGTAAAATG+AGG + chr4.1:78955031-78955050 MS.gene73259:intron 25.0%
!!! GTCAAATTTGAATCTTGTTT+TGG - chr4.1:78958201-78958220 None:intergenic 25.0%
!!! TTTTTAGGGTAGTTTGTATA+TGG + chr4.1:78955482-78955501 MS.gene73259:intron 25.0%
!!! TTTTTTTAAAACTCGGTATC+CGG - chr4.1:78954920-78954939 None:intergenic 25.0%
AACCTTAAAGGGAATAAGTT+GGG + chr4.1:78955780-78955799 MS.gene73259:intron 30.0%
AACGGTAGAATTAAAGATAG+AGG + chr4.1:78957256-78957275 MS.gene73259:CDS 30.0%
AATGATTCACATGGATTCTT+CGG - chr4.1:78954181-78954200 None:intergenic 30.0%
AATGTAGTAGTAGGGAATTA+GGG + chr4.1:78955590-78955609 MS.gene73259:intron 30.0%
ACAAAATGGGGTCTTTATTA+AGG + chr4.1:78954369-78954388 MS.gene73259:intron 30.0%
ACGGTAGAATTAAAGATAGA+GGG + chr4.1:78957257-78957276 MS.gene73259:CDS 30.0%
AGAAACAGAATGTAGTAGTA+GGG + chr4.1:78955582-78955601 MS.gene73259:intron 30.0%
CCACTCACTACATATTATTA+TGG + chr4.1:78957185-78957204 MS.gene73259:CDS 30.0%
CCATAATAATATGTAGTGAG+TGG - chr4.1:78957188-78957207 None:intergenic 30.0%
CCTAATTGATATCATAAGCT+GGG + chr4.1:78956006-78956025 MS.gene73259:intron 30.0%
CTAGAATTATACTCTTGCTT+TGG - chr4.1:78957221-78957240 None:intergenic 30.0%
GCAATATTGGAACGAATATT+TGG - chr4.1:78956299-78956318 None:intergenic 30.0%
GGGTCTTTATTAAGGAAAAT+GGG + chr4.1:78954377-78954396 MS.gene73259:intron 30.0%
GGTACACTAATAACTTTATG+TGG - chr4.1:78956154-78956173 None:intergenic 30.0%
TAATAATATGTAGTGAGTGG+TGG - chr4.1:78957185-78957204 None:intergenic 30.0%
TACTCTATCAGAACCTTAAA+GGG + chr4.1:78955769-78955788 MS.gene73259:intron 30.0%
TCCTAATTGATATCATAAGC+TGG + chr4.1:78956005-78956024 MS.gene73259:intron 30.0%
TGCACAGATAAGTAAGAATT+GGG + chr4.1:78955616-78955635 MS.gene73259:intron 30.0%
TGTTATGATGGTTTACTTAG+TGG + chr4.1:78956215-78956234 MS.gene73259:intron 30.0%
TTCGAATGCTATACATATCT+TGG + chr4.1:78958013-78958032 MS.gene73259:intron 30.0%
TTCTTGCATAATGATTCACA+TGG - chr4.1:78954190-78954209 None:intergenic 30.0%
TTGCACAGATAAGTAAGAAT+TGG + chr4.1:78955615-78955634 MS.gene73259:intron 30.0%
! ATTTTCAGTGGAATCGTTTT+TGG - chr4.1:78953896-78953915 None:intergenic 30.0%
! CTGTCTATTAAGATTTTCAG+TGG - chr4.1:78953908-78953927 None:intergenic 30.0%
! TCAAAATTTACACTGACTAG+TGG + chr4.1:78958153-78958172 MS.gene73259:CDS 30.0%
! TGAATATTGATGACACTGAA+TGG + chr4.1:78954218-78954237 MS.gene73259:CDS 30.0%
! TGGAAGCATAAATAAAGATG+AGG - chr4.1:78956134-78956153 None:intergenic 30.0%
! TTCTGATTTGAGTCAATTAC+AGG + chr4.1:78954483-78954502 MS.gene73259:CDS 30.0%
!! CAGTGTAAATTTTGATGTCA+AGG - chr4.1:78958148-78958167 None:intergenic 30.0%
!!! TTTGCTTTTTGAACTTGCAT+TGG + chr4.1:78955411-78955430 MS.gene73259:intron 30.0%
AAAGATTGTGCCAAGTTCTT+TGG + chr4.1:78954426-78954445 MS.gene73259:intron 35.0%
AAATCAAGAGGTAAGAATCC+TGG - chr4.1:78958092-78958111 None:intergenic 35.0%
AAATTAGTAGGTCCTTGAAC+CGG + chr4.1:78954898-78954917 MS.gene73259:intron 35.0%
AAGACAACTGTGTCTTTAGT+TGG - chr4.1:78957796-78957815 None:intergenic 35.0%
AAGTAAGGAGGTAAATAGAC+CGG + chr4.1:78955532-78955551 MS.gene73259:intron 35.0%
AAGTTGGGTAAAAGAGAAGA+TGG + chr4.1:78955795-78955814 MS.gene73259:intron 35.0%
ACAACTATATCAGATACGAC+CGG - chr4.1:78955554-78955573 None:intergenic 35.0%
ACACTGTTATTGTTACCGTT+TGG + chr4.1:78956599-78956618 MS.gene73259:intron 35.0%
ACCATCCAAAACCTTTACAA+TGG - chr4.1:78957009-78957028 None:intergenic 35.0%
AGAACTATGTTGTGAATCGT+TGG + chr4.1:78955156-78955175 MS.gene73259:intron 35.0%
AGATGAGGTGAATGAAGATA+AGG - chr4.1:78956119-78956138 None:intergenic 35.0%
AGCTTCCTTACAATACCATT+AGG + chr4.1:78956981-78957000 MS.gene73259:CDS 35.0%
ATCTGTACATCAAAAGGACA+GGG - chr4.1:78956735-78956754 None:intergenic 35.0%
ATGTACATGAGGAATGTTGA+GGG - chr4.1:78957162-78957181 None:intergenic 35.0%
CAAAGTGTGTTCAAACTAGT+AGG + chr4.1:78958223-78958242 MS.gene73259:CDS 35.0%
CAGAAACAGAATGTAGTAGT+AGG + chr4.1:78955581-78955600 MS.gene73259:intron 35.0%
CAGAATCTTGATTGTACTTG+TGG + chr4.1:78954289-78954308 MS.gene73259:CDS 35.0%
CATAAGTGTCACATAAGTGA+CGG - chr4.1:78954631-78954650 None:intergenic 35.0%
CCCAGCTTATGATATCAATT+AGG - chr4.1:78956009-78956028 None:intergenic 35.0%
CCTGTAAATTGCAAATCAAG+AGG - chr4.1:78958104-78958123 None:intergenic 35.0%
CTCTCAGGATCCAAATTATT+AGG - chr4.1:78954334-78954353 None:intergenic 35.0%
CTTCACTTCAAGATCAACAA+GGG - chr4.1:78957483-78957502 None:intergenic 35.0%
CTTGTTACGAAGAGCAATAT+TGG - chr4.1:78956312-78956331 None:intergenic 35.0%
GAACCTTAAAGGGAATAAGT+TGG + chr4.1:78955779-78955798 MS.gene73259:intron 35.0%
GAATAGAAAGGAAAGTAAGG+AGG + chr4.1:78955520-78955539 MS.gene73259:intron 35.0%
GAATGTAGTAGTAGGGAATT+AGG + chr4.1:78955589-78955608 MS.gene73259:intron 35.0%
GCTTCCTTACAATACCATTA+GGG + chr4.1:78956982-78957001 MS.gene73259:CDS 35.0%
GGGGTCTTTATTAAGGAAAA+TGG + chr4.1:78954376-78954395 MS.gene73259:intron 35.0%
GTACTCTATCAGAACCTTAA+AGG + chr4.1:78955768-78955787 MS.gene73259:intron 35.0%
GTAGAATTAAAGATAGAGGG+AGG + chr4.1:78957260-78957279 MS.gene73259:CDS 35.0%
GTTCAAGGACCTACTAATTT+GGG - chr4.1:78954898-78954917 None:intergenic 35.0%
TACCCAACTTATTCCCTTTA+AGG - chr4.1:78955785-78955804 None:intergenic 35.0%
TATCAGATGCGTATCAGTAT+CGG - chr4.1:78957678-78957697 None:intergenic 35.0%
TATTGCTCTTCGTAACAAGT+TGG + chr4.1:78956313-78956332 MS.gene73259:intron 35.0%
TCAGAATCAACATCATTCCT+CGG + chr4.1:78954070-78954089 MS.gene73259:CDS 35.0%
TCATATCATACTGTGTATCC+AGG + chr4.1:78958071-78958090 MS.gene73259:intron 35.0%
TCTCCTACACTATATAATGC+CGG - chr4.1:78957395-78957414 None:intergenic 35.0%
TTCAACATGACACAGATATG+AGG - chr4.1:78958050-78958069 None:intergenic 35.0%
TTCACTTCAAGATCAACAAG+GGG - chr4.1:78957482-78957501 None:intergenic 35.0%
TTCAGCATCTGTACATCAAA+AGG - chr4.1:78956741-78956760 None:intergenic 35.0%
TTGTAGAGTAAGACCTTGTA+GGG + chr4.1:78954743-78954762 MS.gene73259:intron 35.0%
TTGTTGATCATCGTTGTTTG+TGG - chr4.1:78954032-78954051 None:intergenic 35.0%
TTTGTAGAGTAAGACCTTGT+AGG + chr4.1:78954742-78954761 MS.gene73259:intron 35.0%
! ACTAGTTTGAACACACTTTG+AGG - chr4.1:78958223-78958242 None:intergenic 35.0%
! AGTAAGAATTGGGAGAGTTT+TGG + chr4.1:78955626-78955645 MS.gene73259:intron 35.0%
! ATAGACTAGCCCACAAAAAA+TGG - chr4.1:78954825-78954844 None:intergenic 35.0%
! ATGTTTAGATATAGGTTGGG+TGG + chr4.1:78957902-78957921 MS.gene73259:intron 35.0%
! GTAAGAATTGGGAGAGTTTT+GGG + chr4.1:78955627-78955646 MS.gene73259:intron 35.0%
! TAAGAATTGGGAGAGTTTTG+GGG + chr4.1:78955628-78955647 MS.gene73259:intron 35.0%
! TGTTTAGATATAGGTTGGGT+GGG + chr4.1:78957903-78957922 MS.gene73259:intron 35.0%
! TTGGACTTATGGAAAGGTAT+TGG - chr4.1:78957705-78957724 None:intergenic 35.0%
! TTGGATGGTAACTCTTTTGT+TGG + chr4.1:78957020-78957039 MS.gene73259:CDS 35.0%
!! AACGTCCATTTTAATGTCGT+GGG - chr4.1:78956886-78956905 None:intergenic 35.0%
!! AGTAGATGGGGAAAAGTATT+AGG - chr4.1:78955721-78955740 None:intergenic 35.0%
!! CCTCTAAAACCTTTATCTTG+CGG + chr4.1:78955105-78955124 MS.gene73259:intron 35.0%
!! CCTCTTGATTTGCAATTTAC+AGG + chr4.1:78958101-78958120 MS.gene73259:intron 35.0%
!! GGAATTAGTTTGTCAGTTAG+AGG - chr4.1:78955976-78955995 None:intergenic 35.0%
!! TAACGTCCATTTTAATGTCG+TGG - chr4.1:78956887-78956906 None:intergenic 35.0%
!! TGGACTTATGGAAAGGTATT+GGG - chr4.1:78957704-78957723 None:intergenic 35.0%
!! TTAATTTGTTGGGGGATCTT+GGG - chr4.1:78957343-78957362 None:intergenic 35.0%
!! TTTAATTTGTTGGGGGATCT+TGG - chr4.1:78957344-78957363 None:intergenic 35.0%
!! TTTTGACTGAATGTGTCTCT+AGG + chr4.1:78954596-78954615 MS.gene73259:intron 35.0%
!!! TCCATTGTAAAGGTTTTGGA+TGG + chr4.1:78957005-78957024 MS.gene73259:CDS 35.0%
AAGTATTAGGATCAACCCTC+TGG - chr4.1:78955708-78955727 None:intergenic 40.0%
AATTGCAACAGGAGTAGATG+GGG - chr4.1:78955733-78955752 None:intergenic 40.0%
AATTTGGATCCTGAGAGTCA+GGG + chr4.1:78954337-78954356 MS.gene73259:CDS 40.0%
ACCATTAGGGTCCATTGTAA+AGG + chr4.1:78956995-78957014 MS.gene73259:CDS 40.0%
ACCTTTACAATGGACCCTAA+TGG - chr4.1:78956999-78957018 None:intergenic 40.0%
AGACCGGCATTATATAGTGT+AGG + chr4.1:78957389-78957408 MS.gene73259:CDS 40.0%
AGAGAGAGTCATATACAAGC+GGG - chr4.1:78955881-78955900 None:intergenic 40.0%
AGCAAAAGCCTTGACTGAAA+TGG + chr4.1:78957316-78957335 MS.gene73259:CDS 40.0%
AGCAACATTTGTTTGCAGAC+AGG - chr4.1:78954154-78954173 None:intergenic 40.0%
AGGCAAGAATTAGCAGAAAG+TGG - chr4.1:78957434-78957453 None:intergenic 40.0%
AGGGGAATGAGGTACAAAAT+GGG + chr4.1:78954356-78954375 MS.gene73259:intron 40.0%
AGTAAAATGAGGGTAACGCA+GGG + chr4.1:78955042-78955061 MS.gene73259:intron 40.0%
ATGCAGATATTGGTGGAATC+AGG + chr4.1:78954457-78954476 MS.gene73259:intron 40.0%
ATGGAAGTCACCAAAGAACT+TGG - chr4.1:78954439-78954458 None:intergenic 40.0%
CAATTGCAACAGGAGTAGAT+GGG - chr4.1:78955734-78955753 None:intergenic 40.0%
CAGAGAGAGTCATATACAAG+CGG - chr4.1:78955882-78955901 None:intergenic 40.0%
CATCGTTGTTTGTGGTTAAG+AGG - chr4.1:78954024-78954043 None:intergenic 40.0%
CATCTGTACATCAAAAGGAC+AGG - chr4.1:78956736-78956755 None:intergenic 40.0%
CCTTCACTTCAAGATCAACA+AGG - chr4.1:78957484-78957503 None:intergenic 40.0%
CCTTGTTGATCTTGAAGTGA+AGG + chr4.1:78957481-78957500 MS.gene73259:CDS 40.0%
GAAGTCAACAAAGTTTCCAC+TGG - chr4.1:78956955-78956974 None:intergenic 40.0%
GAAGTGAAGGTGATATGCAT+TGG + chr4.1:78957494-78957513 MS.gene73259:CDS 40.0%
GAGACACATTCAGTCAAAAG+TGG - chr4.1:78954595-78954614 None:intergenic 40.0%
GATGTACATGAGGAATGTTG+AGG - chr4.1:78957163-78957182 None:intergenic 40.0%
GATTTAAGGGCAATTGCAAC+AGG - chr4.1:78955744-78955763 None:intergenic 40.0%
GCAACATTTGTTTGCAGACA+GGG - chr4.1:78954153-78954172 None:intergenic 40.0%
GGAAAATGGGTCATTGTTTC+TGG + chr4.1:78954390-78954409 MS.gene73259:intron 40.0%
GGTTCAAGGACCTACTAATT+TGG - chr4.1:78954899-78954918 None:intergenic 40.0%
TAAAGACACAGTTGTCTTCC+AGG + chr4.1:78957798-78957817 MS.gene73259:intron 40.0%
TAATTTGGATCCTGAGAGTC+AGG + chr4.1:78954336-78954355 MS.gene73259:CDS 40.0%
TAGTAAAATGAGGGTAACGC+AGG + chr4.1:78955041-78955060 MS.gene73259:intron 40.0%
TCGATGCCAACAAATCTGAA+CGG + chr4.1:78955907-78955926 MS.gene73259:intron 40.0%
TCTGATCCTATTGATCCAGA+GGG + chr4.1:78955690-78955709 MS.gene73259:intron 40.0%
TGATTCCACCAATATCTGCA+TGG - chr4.1:78954458-78954477 None:intergenic 40.0%
TGCAGATATTGGTGGAATCA+GGG + chr4.1:78954458-78954477 MS.gene73259:intron 40.0%
TGGACCCTAATGGTATTGTA+AGG - chr4.1:78956989-78957008 None:intergenic 40.0%
TGTACATGAGGAATGTTGAG+GGG - chr4.1:78957161-78957180 None:intergenic 40.0%
TGTAGAGTAAGACCTTGTAG+GGG + chr4.1:78954744-78954763 MS.gene73259:intron 40.0%
TTCAAGTGTTCAACACAAGC+AGG + chr4.1:78956088-78956107 MS.gene73259:intron 40.0%
TTGCACCCACGACATTAAAA+TGG + chr4.1:78956878-78956897 MS.gene73259:CDS 40.0%
TTTGAATGTGAGACCTTGAG+AGG - chr4.1:78954791-78954810 None:intergenic 40.0%
! ACACAACTTTGGAAAACAGG+AGG + chr4.1:78954513-78954532 MS.gene73259:CDS 40.0%
! AGGGTCCATTGTAAAGGTTT+TGG + chr4.1:78957001-78957020 MS.gene73259:CDS 40.0%
! ATTTACACTGACTAGTGGAC+TGG + chr4.1:78958158-78958177 MS.gene73259:CDS 40.0%
! CACACACAACTTTGGAAAAC+AGG + chr4.1:78954510-78954529 MS.gene73259:CDS 40.0%
! CTTTGGAAAACAGGAGGTAA+TGG + chr4.1:78954519-78954538 MS.gene73259:intron 40.0%
! GTTTAGATATAGGTTGGGTG+GGG + chr4.1:78957904-78957923 MS.gene73259:intron 40.0%
! TGGTTTGGACAATCAAAGTG+TGG - chr4.1:78957137-78957156 None:intergenic 40.0%
! TTTAGATATAGGTTGGGTGG+GGG + chr4.1:78957905-78957924 MS.gene73259:intron 40.0%
!! ACTTATGGAAAGGTATTGGG+GGG - chr4.1:78957701-78957720 None:intergenic 40.0%
!! CCGCAAGATAAAGGTTTTAG+AGG - chr4.1:78955108-78955127 None:intergenic 40.0%
!! GACTTATGGAAAGGTATTGG+GGG - chr4.1:78957702-78957721 None:intergenic 40.0%
!! GAGAGTGTCAACAAAGTCTT+TGG - chr4.1:78953963-78953982 None:intergenic 40.0%
!! GAGGAATGATGTTGATTCTG+AGG - chr4.1:78954071-78954090 None:intergenic 40.0%
!! GGACTTATGGAAAGGTATTG+GGG - chr4.1:78957703-78957722 None:intergenic 40.0%
!! GTGTGTGTGTGTTTTGGATA+GGG - chr4.1:78956575-78956594 None:intergenic 40.0%
!! TATACAGCTCTGGCTTTAGT+TGG + chr4.1:78954842-78954861 MS.gene73259:intron 40.0%
!! TGTGTGTGTGTGTTTTGGAT+AGG - chr4.1:78956576-78956595 None:intergenic 40.0%
!!! ATCGTTGGTCTTTTCAGTCT+AGG + chr4.1:78955171-78955190 MS.gene73259:intron 40.0%
!!! TCGTTGGTCTTTTCAGTCTA+GGG + chr4.1:78955172-78955191 MS.gene73259:intron 40.0%
AAAACTCGGTATCCGGTTCA+AGG - chr4.1:78954913-78954932 None:intergenic 45.0%
ACAGGGTTCCAAACATCGTT+TGG - chr4.1:78954136-78954155 None:intergenic 45.0%
ACCAGATACGACACTGACAT+GGG - chr4.1:78954703-78954722 None:intergenic 45.0%
ACTGCTGATGCAAACTGGTT+TGG - chr4.1:78956846-78956865 None:intergenic 45.0%
AGCCCACAAAAAATGGCACA+GGG - chr4.1:78954818-78954837 None:intergenic 45.0%
AGGTTAAGGTGTACTTGAGG+AGG - chr4.1:78956764-78956783 None:intergenic 45.0%
ATAATCTGTGCAGAAGCCAG+TGG + chr4.1:78956936-78956955 MS.gene73259:CDS 45.0%
ATTTGGATCCTGAGAGTCAG+GGG + chr4.1:78954338-78954357 MS.gene73259:CDS 45.0%
ATTTGTCAGAGGCTCATGAG+AGG - chr4.1:78956784-78956803 None:intergenic 45.0%
CAATTGCAGCCGCAAGATAA+AGG - chr4.1:78955117-78955136 None:intergenic 45.0%
CAGGAAGTCACACACAACTT+TGG + chr4.1:78954502-78954521 MS.gene73259:CDS 45.0%
CAGGGGAATGAGGTACAAAA+TGG + chr4.1:78954355-78954374 MS.gene73259:intron 45.0%
CTAAATTGTGGTCGCGATTG+TGG + chr4.1:78954995-78955014 MS.gene73259:intron 45.0%
CTATGCTTCATAGACCACGT+GGG - chr4.1:78957615-78957634 None:intergenic 45.0%
CTCTGATCCTATTGATCCAG+AGG + chr4.1:78955689-78955708 MS.gene73259:intron 45.0%
CTCTGGATCAATAGGATCAG+AGG - chr4.1:78955691-78955710 None:intergenic 45.0%
CTTCAAGATCAACAAGGGGA+AGG - chr4.1:78957478-78957497 None:intergenic 45.0%
CTTTGACTGCTGATGCAAAC+TGG - chr4.1:78956851-78956870 None:intergenic 45.0%
GACACCAGGATTGAGTAACA+TGG - chr4.1:78957111-78957130 None:intergenic 45.0%
GACATGAGTCAGAAGCTCTT+AGG - chr4.1:78956432-78956451 None:intergenic 45.0%
GACTTCCATGCAGATATTGG+TGG + chr4.1:78954450-78954469 MS.gene73259:intron 45.0%
GAGACACCGTTCAGATTTGT+TGG - chr4.1:78955916-78955935 None:intergenic 45.0%
GAGAGGTTAAGGTGTACTTG+AGG - chr4.1:78956767-78956786 None:intergenic 45.0%
GATCAACCCTCTGGATCAAT+AGG - chr4.1:78955699-78955718 None:intergenic 45.0%
GCAATTGCAACAGGAGTAGA+TGG - chr4.1:78955735-78955754 None:intergenic 45.0%
GCTACTCGAACTGTAATGTC+TGG + chr4.1:78955276-78955295 MS.gene73259:intron 45.0%
GCTACTCTGATGAGTGGTAA+AGG - chr4.1:78956456-78956475 None:intergenic 45.0%
GGAGTGATTTCTAAGTCGCA+TGG + chr4.1:78957281-78957300 MS.gene73259:CDS 45.0%
GGGGAATGAGGTACAAAATG+GGG + chr4.1:78954357-78954376 MS.gene73259:intron 45.0%
GGGTTTGTACGCTTTCATAG+AGG - chr4.1:78954108-78954127 None:intergenic 45.0%
GGTGACTTCCATGCAGATAT+TGG + chr4.1:78954447-78954466 MS.gene73259:intron 45.0%
TAGCCCACAAAAAATGGCAC+AGG - chr4.1:78954819-78954838 None:intergenic 45.0%
TCATAAGCTGGGCGATCTAT+TGG + chr4.1:78956017-78956036 MS.gene73259:intron 45.0%
TCTATGCTTCATAGACCACG+TGG - chr4.1:78957616-78957635 None:intergenic 45.0%
TCTTGGGTCCATTTCAGTCA+AGG - chr4.1:78957327-78957346 None:intergenic 45.0%
TGTGGTTAAGAGGCGAATGA+TGG - chr4.1:78954014-78954033 None:intergenic 45.0%
TTGATGTCAAGGAAGCTGCA+AGG - chr4.1:78958137-78958156 None:intergenic 45.0%
! AGAGGTTTTTGATGCTTCCG+AGG - chr4.1:78954090-78954109 None:intergenic 45.0%
! CCAAACATCGTTTGGAGTGA+GGG - chr4.1:78954128-78954147 None:intergenic 45.0%
! GATATGCATTGGTGAAGCTG+AGG + chr4.1:78957505-78957524 MS.gene73259:CDS 45.0%
! GTACAAGAGTGTAGAGAGCT+TGG + chr4.1:78957058-78957077 MS.gene73259:CDS 45.0%
! GTGTGTGTGTGTGTGTGTTT+TGG - chr4.1:78956581-78956600 None:intergenic 45.0%
! TCCAAACATCGTTTGGAGTG+AGG - chr4.1:78954129-78954148 None:intergenic 45.0%
!! GGTTGGTCTCCCAAATTAGT+AGG + chr4.1:78954886-78954905 MS.gene73259:intron 45.0%
!!! CTCCCTGTGCCATTTTTTGT+GGG + chr4.1:78954813-78954832 MS.gene73259:intron 45.0%
!!! TGGCGGGTTGTCTTTTTTCT+TGG - chr4.1:78956826-78956845 None:intergenic 45.0%
!! TAAAGAATTAATAAAATTAT+TGG - chr4.1:78957724-78957743 None:intergenic 5.0%
AACCGCGCTGTCTACTCATT+GGG - chr4.1:78954870-78954889 None:intergenic 50.0%
AGTAAGACCTTGTAGGGGCT+TGG + chr4.1:78954749-78954768 MS.gene73259:intron 50.0%
ATGTCAAGGAAGCTGCAAGG+AGG - chr4.1:78958134-78958153 None:intergenic 50.0%
CACCAGATACGACACTGACA+TGG - chr4.1:78954704-78954723 None:intergenic 50.0%
CAGAGGCTCATGAGAGGTTA+AGG - chr4.1:78956778-78956797 None:intergenic 50.0%
CCACAAAAAATGGCACAGGG+AGG - chr4.1:78954815-78954834 None:intergenic 50.0%
CCCTCACTCCAAACGATGTT+TGG + chr4.1:78954125-78954144 MS.gene73259:CDS 50.0%
CGACATCGCAACTGCAATTG+CGG - chr4.1:78955076-78955095 None:intergenic 50.0%
CGCAATGCTACTCTGATGAG+TGG - chr4.1:78956462-78956481 None:intergenic 50.0%
CGCTCCATGTTACTCAATCC+TGG + chr4.1:78957104-78957123 MS.gene73259:CDS 50.0%
GGTGGGATTTGTGAAGAGAC+CGG + chr4.1:78957373-78957392 MS.gene73259:CDS 50.0%
GGTTAAGAGGCGAATGATGG+TGG - chr4.1:78954011-78954030 None:intergenic 50.0%
GTAAGACCTTGTAGGGGCTT+GGG + chr4.1:78954750-78954769 MS.gene73259:intron 50.0%
TAGAGAGCTTGGACTCTTCG+TGG + chr4.1:78957069-78957088 MS.gene73259:CDS 50.0%
!! CTGATGCAAACTGGTTTGGC+GGG - chr4.1:78956842-78956861 None:intergenic 50.0%
!! GCTGATGCAAACTGGTTTGG+CGG - chr4.1:78956843-78956862 None:intergenic 50.0%
!! GTGAGTGGTGGATGTACATG+AGG - chr4.1:78957173-78957192 None:intergenic 50.0%
!! TGGGCTAGTCTATACAGCTC+TGG + chr4.1:78954832-78954851 MS.gene73259:intron 50.0%
!!! CCTCCCTGTGCCATTTTTTG+TGG + chr4.1:78954812-78954831 MS.gene73259:intron 50.0%
ACCTCATTCCCCTGACTCTC+AGG - chr4.1:78954349-78954368 None:intergenic 55.0%
AGCCCAATGAGTAGACAGCG+CGG + chr4.1:78954865-78954884 MS.gene73259:intron 55.0%
ATACAAGCGGGAGCCCTTGA+AGG - chr4.1:78955869-78955888 None:intergenic 55.0%
CAACCGCGCTGTCTACTCAT+TGG - chr4.1:78954871-78954890 None:intergenic 55.0%
CAAGATCCCAAGCCCCTACA+AGG - chr4.1:78954759-78954778 None:intergenic 55.0%
CAATGAGTAGACAGCGCGGT+TGG + chr4.1:78954869-78954888 MS.gene73259:intron 55.0%
CATCGCAACTGCAATTGCGG+TGG - chr4.1:78955073-78955092 None:intergenic 55.0%
CATGAGGAATGTTGAGGGGC+TGG - chr4.1:78957157-78957176 None:intergenic 55.0%
CTTCATAGACCACGTGGGAG+GGG - chr4.1:78957610-78957629 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr4.1:78954775-78954794 MS.gene73259:intron 55.0%
CTTGTAGGGGCTTGGGATCT+TGG + chr4.1:78954757-78954776 MS.gene73259:intron 55.0%
GCCCATGTCAGTGTCGTATC+TGG + chr4.1:78954699-78954718 MS.gene73259:intron 55.0%
GCTTCATAGACCACGTGGGA+GGG - chr4.1:78957611-78957630 None:intergenic 55.0%
TCAAAGTGTGGTGCGACACC+AGG - chr4.1:78957125-78957144 None:intergenic 55.0%
TCCTGAGAGTCAGGGGAATG+AGG + chr4.1:78954345-78954364 MS.gene73259:CDS 55.0%
TGCTTCATAGACCACGTGGG+AGG - chr4.1:78957612-78957631 None:intergenic 55.0%
TTCATAGACCACGTGGGAGG+GGG - chr4.1:78957609-78957628 None:intergenic 55.0%
! TGGTGGCGAGTGGAAGAGAA+AGG - chr4.1:78953994-78954013 None:intergenic 55.0%
!! GGAATGTTGAGGGGCTGGTT+TGG - chr4.1:78957152-78957171 None:intergenic 55.0%
ACGTGGGAGGGGGATCAAAG+AGG - chr4.1:78957599-78957618 None:intergenic 60.0%
TCTTTGATCCCCCTCCCACG+TGG + chr4.1:78957598-78957617 MS.gene73259:intron 60.0%
TGCGGCTGCAATTGCTGCTG+CGG + chr4.1:78955123-78955142 MS.gene73259:intron 60.0%
!! AGGCGAATGATGGTGGCGAG+TGG - chr4.1:78954004-78954023 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr4.1 gene 78953875 78958284 78953875 ID=MS.gene73259
chr4.1 mRNA 78953875 78958284 78953875 ID=MS.gene73259.t1;Parent=MS.gene73259
chr4.1 exon 78953875 78954366 78953875 ID=MS.gene73259.t1.exon1;Parent=MS.gene73259.t1
chr4.1 CDS 78953875 78954366 78953875 ID=cds.MS.gene73259.t1;Parent=MS.gene73259.t1
chr4.1 exon 78954463 78954534 78954463 ID=MS.gene73259.t1.exon2;Parent=MS.gene73259.t1
chr4.1 CDS 78954463 78954534 78954463 ID=cds.MS.gene73259.t1;Parent=MS.gene73259.t1
chr4.1 exon 78956753 78957526 78956753 ID=MS.gene73259.t1.exon3;Parent=MS.gene73259.t1
chr4.1 CDS 78956753 78957526 78956753 ID=cds.MS.gene73259.t1;Parent=MS.gene73259.t1
chr4.1 exon 78958123 78958284 78958123 ID=MS.gene73259.t1.exon4;Parent=MS.gene73259.t1
chr4.1 CDS 78958123 78958284 78958123 ID=cds.MS.gene73259.t1;Parent=MS.gene73259.t1
Gene Sequence

>MS.gene73259

ATGGCTTCTGAAGAAGAGCCAAAAACGATTCCACTGAAAATCTTAATAGACAGAGAAAACAACAAAGTAGTCGCTGTAGAATCAACCAAAGACTTTGTTGACACTCTCTTCAGCTTCCTTTCTCTTCCACTCGCCACCATCATTCGCCTCTTAACCACAAACAACGATGATCAACAACTACAAGAACAACAATCCTCAGAATCAACATCATTCCTCGGAAGCATCAAAAACCTCTATGAAAGCGTACAAACCCTCACTCCAAACGATGTTTGGAACCCTGTCTGCAAACAAATGTTGCTGAATCCGAAGAATCCATGTGAATCATTATGCAAGAAACTTTTCTTGAATATTGATGACACTGAATGGTCAAGTAAGTTTTTTGTGTGTGATGCTTGTAACAAGTTTACAACTTTTCAGAATCTTGATTGTACTTGTGGAAAACCCACTAATAAACAGCCTAATAATTTGGATCCTGAGAGTCAGGGGAATGAGGTACAAAATGGGGTCTTTATTAAGGAAAATGGGTCATTGTTTCTGGTGTCTGATGATTTAAAGATTGTGCCAAGTTCTTTGGTGACTTCCATGCAGATATTGGTGGAATCAGGGTATTCTGATTTGAGTCAATTACAGGAAGTCACACACAACTTTGGAAAACAGGAGGTAATGGTGTTGTGTTTTACAATGTGTATTTTTATGTCATGTTACTCTGTTGCATTGCCACTTTTGACTGAATGTGTCTCTAGGTCTCTGACACCGTCACTTATGTGACACTTATGATTGCATTGAATTATGTCATTTTCTTAAAATTTTATCAGCGTCGACGTGCCCATGTCAGTGTCGTATCTGGTGTCCGTGTTTCATAACATGTTTGTAGAGTAAGACCTTGTAGGGGCTTGGGATCTTGGAGTGTGCTCCTCTCAAGGTCTCACATTCAAATCCTCCCTGTGCCATTTTTTGTGGGCTAGTCTATACAGCTCTGGCTTTAGTTGGAGCCCAATGAGTAGACAGCGCGGTTGGTCTCCCAAATTAGTAGGTCCTTGAACCGGATACCGAGTTTTAAAAAAATAAATTGTAGCGTAAGAAAAATCCGAAAAAATATTTGAAACTGTGAATCATTGTTCTAAATTGTGGTCGCGATTGTGGATGCGATGCAAACCTTGTTATTGTAGTAAAATGAGGGTAACGCAGGGTGATGCCACCGCAATTGCAGTTGCGATGTCGTTGCAGAGACCTCTAAAACCTTTATCTTGCGGCTGCAATTGCTGCTGCGGACTACAATTTAGAACTATGTTGTGAATCGTTGGTCTTTTCAGTCTAGGGTTACTTAGAACTCAAGTCTTAAGTGTTTGCATTTTAGTCTAGTGTTAGTAGAATACACATGTTAACTATGAGTATCAAAATGCTACTCGAACTGTAATGTCTGGATCAAAATAACTAATGAATAATGGTTTTGAGATCTTTTCTGAGTTTTTCTTGTTTCACAGACAAGTTAACAATGTCCTATAATTTGAGGTATTGAATTGGTGATTCACTCTTTTTGCTTTTTGAACTTGCATTGGATGTTTAGACTGTTCTTGAATTATGAAACTTAACTTTATAACTTTCGTTTTTTAGGGTAGTTTGTATATGGAATATCATCTGTTAAGAATAGAAAGGAAAGTAAGGAGGTAAATAGACCGGTCGTATCTGATATAGTTGTAAACTGACAGAAACAGAATGTAGTAGTAGGGAATTAGGGTGTTGCACAGATAAGTAAGAATTGGGAGAGTTTTGGGGCACTTTTGAATTAGCCTAGAGTTTATCACTTTCTATTCCTCTGATCCTATTGATCCAGAGGGTTGATCCTAATACTTTTCCCCATCTACTCCTGTTGCAATTGCCCTTAAATCTATTGTACTCTATCAGAACCTTAAAGGGAATAAGTTGGGTAAAAGAGAAGATGGTTTTTACTGATTGAATAAAATTGAACAAAACCAAAGAAAAAGATTTAACCTTCAAGGGCTCCCGCTTGTATATGACTCTCTCTGTCTGATCGATGCCAACAAATCTGAACGGTGTCTCTGCCCTTACATCCCTTATTTAGTTATCGAACTAATCTCCTCTAACTGACAAACTAATTCCTCAAATTGTTCCTAATTGATATCATAAGCTGGGCGATCTATTGGTTAACAGTTCAACCATTTTTACACTAATTATTCTGATAAATATTGAATTTCAAGTGTTCAACACAAGCAGGTTGCACCTTATCTTCATTCACCTCATCTTTATTTATGCTTCCACATAAAGTTATTAGTGTACCATAAATGAAAAGGGAAAACATTACTTAATAAACATTCACAATGTTATGATGGTTTACTTAGTGGCTAGTTGTTGTACTTAAATTACGGACACACTATAAATCTTGAGTTAGAAATTAGTACTCCAAATATTCGTTCCAATATTGCTCTTCGTAACAAGTTGGTAAGTATTTTTTTTAATGTAACAACTAACAAGTTTTATTGTTTTTGCTGCTGTGTGATCAAGTAGAACATGCTGAAATGTGTTTGTCGTTGCACCTAAGAGCTTCTGACTCATGTCACCTTTACCACTCATCAGAGTAGCATTGCGTATCTCAACTAATTTGAGTGAAGAGTTAAAGGTGTTGAAATAGTTAAGAGAAAAATACTAACATAACAATTAATCAATATACTAATATTTCCCTATCCAAAACACACACACACACACACACTGTTATTGTTACCGTTTGGTTTAATATCTTGTATTTCTGTTATGTAATGTGAATTTGTTAGTGAAATATTTTAAAAGAATGTTATATTGGGGTCATTTGTATGTATGTTATCTTGGATAAAAATGTTTTCCCTGTCCTTTTGATGTACAGATGCTGAACCTCCTCAAGTACACCTTAACCTCTCATGAGCCTCTGACAAATACAATTTTGAAAAGCAGCTCCAAGAAAAAAGACAACCCGCCAAACCAGTTTGCATCAGCAGTCAAAGTAAAAACTTGCACCCACGACATTAAAATGGACGTTAAGCTAGTGCGAAGTAAATCTCAGAAAAAGATAATCTGTGCAGAAGCCAGTGGAAACTTTGTTGACTTCATGTTTAGCTTCCTTACAATACCATTAGGGTCCATTGTAAAGGTTTTGGATGGTAACTCTTTTGTTGGATGTGTTGATAATTTGTACAAGAGTGTAGAGAGCTTGGACTCTTCGTGGTGTACAAACTCGCGCTCCATGTTACTCAATCCTGGTGTCGCACCACACTTTGATTGTCCAAACCAGCCCCTCAACATTCCTCATGTACATCCACCACTCACTACATATTATTATGGTACAGGAACACCAAAGCAAGAGTATAATTCTAGTTGTTATGGTTATCAAACGGTAGAATTAAAGATAGAGGGAGGAGTGATTTCTAAGTCGCATGGATTGATTTATAAAGCAAAAGCCTTGACTGAAATGGACCCAAGATCCCCCAACAAATTAAAAAAAGATGTGGTGGGATTTGTGAAGAGACCGGCATTATATAGTGTAGGAGATGATCTAAAAGTAAAACCACTTTCTGCTAATTCTTGCCTTTCATATTTGAAAGAATTAAACCTTCCCCTTGTTGATCTTGAAGTGAAGGTGATATGCATTGGTGAAGCTGAGGTAAAGTGACTACTATTACTAAATTTATAATTTTTTTTCCTTTTGTTTATTTGTTGTCTAAGTTTTTAGCCTCTTTGATCCCCCTCCCACGTGGTCTATGAAGCATAGATACTTCAAAATTAGAGAAGTATTGATGTATGACACGTATCCGATACTGATACGCATCTGATACCCCCCAATACCTTTCCATAAGTCCAATAATTTTATTAATTCTTTATGAAAATATTTTCATTGATACTTCTCAAATACATCTTCAATACTTCTTACCAACTAAAGACACAGTTGTCTTCCAGGTACACTACATTTTTTATATGCTTTACTAACTAAAGAGACGTAGTTTTGTGATTTTTGGGTCACATTCTTTATAGAAATAATATGTTTAGATATAGGTTGGGTGGGGGAATTATATATGTAACTATGCTTACATGTTATGATTACAAGTACTTTTTTGTAAATTGCGATTACAATAATATCTTTATAAACGTTTTCGAATGCTATACATATCTTGGTTTTGTCGTATCCTCATATCTGTGTCATGTTGAATTCATATCATACTGTGTATCCAGGATTCTTACCTCTTGATTTGCAATTTACAGGCTTTGAGCCTCCTTGCAGCTTCCTTGACATCAAAATTTACACTGACTAGTGGACTGGAAGAATTTTTTAATGAGCCAAAACAAGATTCAAATTTGACCTCAAAGTGTGTTCAAACTAGTAGGCTTGATAAAGTTGCAAAGAAGCCTAAACTAGAAGACTGA
Protein sequence

>MS.gene73259.t1

MASEEEPKTIPLKILIDRENNKVVAVESTKDFVDTLFSFLSLPLATIIRLLTTNNDDQQLQEQQSSESTSFLGSIKNLYESVQTLTPNDVWNPVCKQMLLNPKNPCESLCKKLFLNIDDTEWSSKFFVCDACNKFTTFQNLDCTCGKPTNKQPNNLDPESQGNEILVESGYSDLSQLQEVTHNFGKQEMLNLLKYTLTSHEPLTNTILKSSSKKKDNPPNQFASAVKVKTCTHDIKMDVKLVRSKSQKKIICAEASGNFVDFMFSFLTIPLGSIVKVLDGNSFVGCVDNLYKSVESLDSSWCTNSRSMLLNPGVAPHFDCPNQPLNIPHVHPPLTTYYYGTGTPKQEYNSSCYGYQTVELKIEGGVISKSHGLIYKAKALTEMDPRSPNKLKKDVVGFVKRPALYSVGDDLKVKPLSANSCLSYLKELNLPLVDLEVKVICIGEAEALSLLAASLTSKFTLTSGLEEFFNEPKQDSNLTSKCVQTSRLDKVAKKPKLED