AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene45942

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45942.t1 MTR_7g058710 61.220 508 159 8 2 503 3 478 0.0 581
MS.gene45942.t1 MTR_7g066570 60.784 510 166 4 1 504 1 482 0.0 576
MS.gene45942.t1 MTR_2g029400 59.879 496 104 8 1 492 1 405 0.0 521
MS.gene45942.t1 MTR_7g012680 56.832 505 161 5 1 505 1 448 7.41e-179 510
MS.gene45942.t1 MTR_7g066680 80.323 310 27 2 233 511 38 344 1.37e-173 493
MS.gene45942.t1 MTR_7g066260 53.021 513 185 10 1 505 1 465 7.81e-167 481
MS.gene45942.t1 MTR_7g058700 56.250 480 120 6 26 503 531 922 1.15e-162 485
MS.gene45942.t1 MTR_7g066340 53.216 513 184 11 1 509 1 461 5.18e-160 463
MS.gene45942.t1 MTR_7g066580 51.497 501 173 10 20 506 1 445 2.45e-154 447
MS.gene45942.t1 MTR_1g041315 51.527 491 193 9 1 486 1 451 1.63e-151 442
MS.gene45942.t1 MTR_7g066350 52.200 500 171 12 10 499 5 446 4.39e-149 434
MS.gene45942.t1 MTR_7g066400 47.400 500 194 9 1 498 1 433 1.24e-135 400
MS.gene45942.t1 MTR_7g066290 47.929 507 182 10 2 502 3 433 2.21e-134 396
MS.gene45942.t1 MTR_7g066410 45.294 510 251 8 15 503 11 513 6.08e-132 393
MS.gene45942.t1 MTR_7g066410 27.953 254 148 7 7 249 277 506 4.12e-14 75.1
MS.gene45942.t1 MTR_7g066430 44.841 504 251 6 14 507 4 490 1.22e-131 392
MS.gene45942.t1 MTR_7g066430 26.721 247 152 7 11 249 254 479 6.29e-11 65.1
MS.gene45942.t1 MTR_7g066360 46.784 513 198 12 1 502 1 449 4.28e-127 379
MS.gene45942.t1 MTR_7g066310 44.930 503 158 10 11 509 4 391 4.60e-120 358
MS.gene45942.t1 MTR_7g062300 37.822 505 267 10 4 498 2 469 1.06e-96 301
MS.gene45942.t1 MTR_7g063900 38.867 512 273 10 4 504 2 484 1.62e-95 298
MS.gene45942.t1 MTR_7g062280 37.209 516 277 12 4 503 2 486 2.67e-95 298
MS.gene45942.t1 MTR_7g063820 39.165 503 272 13 8 503 4 479 1.86e-93 293
MS.gene45942.t1 MTR_7g063660 37.132 509 264 12 10 503 5 472 4.91e-93 291
MS.gene45942.t1 MTR_7g063660 27.197 239 137 8 276 496 4 223 8.10e-14 73.9
MS.gene45942.t1 MTR_7g063880 39.181 513 252 15 1 503 1 463 2.45e-92 290
MS.gene45942.t1 MTR_7g063890 40.392 510 262 11 13 510 26 505 6.30e-91 287
MS.gene45942.t1 MTR_7g063840 36.275 510 276 14 1 503 1 468 2.84e-87 276
MS.gene45942.t1 MTR_7g066280 39.823 452 183 12 93 509 1 398 3.48e-83 264
MS.gene45942.t1 MTR_3g007740 36.508 504 239 11 13 503 8 443 1.83e-82 263
MS.gene45942.t1 MTR_4g019310 34.757 515 276 13 11 498 5 486 2.85e-82 264
MS.gene45942.t1 MTR_4g019310 28.947 228 127 8 10 221 262 470 2.16e-11 66.6
MS.gene45942.t1 MTR_7g063920 33.929 504 254 8 5 503 2 431 2.22e-80 257
MS.gene45942.t1 MTR_1g014060 57.642 229 79 3 23 251 9 219 1.08e-79 254
MS.gene45942.t1 MTR_1g014060 51.724 203 80 3 302 504 202 386 2.34e-52 182
MS.gene45942.t1 MTR_7g063830 34.503 513 254 13 8 509 4 445 6.93e-79 254
MS.gene45942.t1 MTR_7g063670 34.870 499 253 11 15 503 16 452 1.86e-74 243
MS.gene45942.t1 MTR_3g065200 34.362 486 229 11 14 489 3 408 3.37e-73 239
MS.gene45942.t1 MTR_4g017440 33.208 530 298 14 1 502 1 502 2.91e-70 233
MS.gene45942.t1 MTR_4g017610 33.981 515 274 14 7 499 6 476 4.79e-69 229
MS.gene45942.t1 MTR_4g017610 26.984 252 166 6 272 510 4 250 3.94e-11 65.5
MS.gene45942.t1 MTR_4g017410 33.143 525 280 16 8 503 3 485 8.47e-69 229
MS.gene45942.t1 MTR_4g017830 33.208 533 289 18 4 502 2 501 1.56e-68 229
MS.gene45942.t1 MTR_4g019340 33.992 506 261 14 15 490 39 501 1.21e-67 226
MS.gene45942.t1 MTR_4g019340 34.615 104 61 3 14 117 303 399 8.31e-11 64.7
MS.gene45942.t1 MTR_7g066480 41.261 349 165 9 13 351 15 333 2.17e-67 223
MS.gene45942.t1 MTR_7g066480 53.846 78 36 0 430 507 349 426 1.57e-17 85.1
MS.gene45942.t1 MTR_7g066490 40.751 346 155 8 14 351 16 319 1.28e-64 216
MS.gene45942.t1 MTR_7g066490 53.846 78 36 0 430 507 335 412 5.41e-17 83.6
MS.gene45942.t1 MTR_4g017470 29.245 530 284 11 5 503 2 471 7.19e-55 192
MS.gene45942.t1 MTR_4g017550 33.063 493 254 17 43 500 20 471 4.89e-53 186
MS.gene45942.t1 MTR_4g017550 25.820 244 148 7 14 241 247 473 3.94e-11 65.5
MS.gene45942.t1 MTR_7g063720 39.655 232 114 4 281 508 23 232 4.03e-44 156
MS.gene45942.t1 MTR_7g063720 24.402 209 133 5 14 221 23 207 7.32e-13 68.9
MS.gene45942.t1 MTR_7g062270 40.500 200 102 6 1 193 1 190 4.04e-36 138
MS.gene45942.t1 MTR_2g067310 43.860 171 53 4 26 196 59 186 1.18e-30 119
MS.gene45942.t1 MTR_8g023240 24.606 508 307 18 15 502 38 489 5.16e-27 115
MS.gene45942.t1 MTR_7g066390 38.122 181 53 4 322 502 1 122 6.91e-27 106
MS.gene45942.t1 MTR_7g063850 34.052 232 130 7 281 503 66 283 1.29e-24 104
MS.gene45942.t1 MTR_7g100420 33.457 269 166 6 233 498 135 393 1.16e-23 103
MS.gene45942.t1 MTR_7g100420 57.143 49 21 0 8 56 33 81 9.81e-11 63.9
MS.gene45942.t1 MTR_1g115440 29.615 260 150 7 5 254 2 238 6.53e-23 97.8
MS.gene45942.t1 MTR_1g115440 30.672 238 138 8 275 495 5 232 8.82e-23 97.4
MS.gene45942.t1 MTR_8g445860 26.587 252 151 5 14 256 13 239 7.54e-20 89.4
MS.gene45942.t1 MTR_8g445860 31.278 227 136 8 281 495 13 231 8.08e-18 83.2
MS.gene45942.t1 MTR_0150s0010 28.839 267 137 7 8 254 4 237 2.16e-19 87.8
MS.gene45942.t1 MTR_0150s0010 31.111 225 142 7 281 495 10 231 3.21e-18 84.3
MS.gene45942.t1 MTR_4g019240 40.000 115 59 4 10 116 9 121 1.25e-15 75.5
MS.gene45942.t1 MTR_7g063690 31.953 169 91 5 141 308 77 222 1.54e-15 76.6
MS.gene45942.t1 MTR_7g063690 62.500 48 18 0 15 62 13 60 7.42e-12 65.9
MS.gene45942.t1 MTR_1g115450 36.047 86 50 1 14 99 7 87 1.09e-14 71.6
MS.gene45942.t1 MTR_1g115470 38.384 99 54 2 12 108 4 97 3.17e-14 75.1
MS.gene45942.t1 MTR_1g115455 38.372 86 48 1 14 99 9 89 4.34e-13 69.3
MS.gene45942.t1 MTR_7g063760 47.059 68 35 1 437 503 1 68 4.50e-12 62.0
MS.gene45942.t1 MTR_8g445920 33.708 89 54 1 8 96 4 87 9.66e-11 59.3
MS.gene45942.t1 MTR_8g044890 33.708 89 54 1 8 96 4 87 9.66e-11 59.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene45942.t1 AT5G01120 32.470 502 303 10 11 498 6 485 8.07e-69 229
MS.gene45942.t1 AT5G01150 30.709 508 306 10 14 507 9 484 7.72e-62 211
MS.gene45942.t1 AT5G01150 23.333 240 151 6 276 496 4 229 8.48e-11 64.7
MS.gene45942.t1 AT5G43240 30.476 525 287 13 11 498 6 489 3.32e-56 196
MS.gene45942.t1 AT5G43240 30.476 525 287 13 11 498 6 489 3.32e-56 196
MS.gene45942.t1 AT5G43240 30.476 525 287 13 11 498 6 489 3.32e-56 196
MS.gene45942.t1 AT3G09140 30.037 546 310 15 11 508 6 527 2.37e-54 191
MS.gene45942.t1 AT3G09140 30.037 536 295 15 11 508 6 499 9.48e-54 189
MS.gene45942.t1 AT3G09140 26.316 247 150 8 276 496 4 244 4.13e-12 68.9
MS.gene45942.t1 AT5G01130 30.080 502 293 9 1 502 1 444 1.63e-50 179
MS.gene45942.t1 AT5G01140 28.373 504 306 10 1 502 1 451 6.25e-49 175
MS.gene45942.t1 AT3G09120 33.434 332 193 6 11 335 3 313 1.44e-48 170
MS.gene45942.t1 AT3G09120 26.693 251 150 8 278 506 3 241 4.46e-13 70.5
MS.gene45942.t1 AT3G09110 32.628 331 202 5 14 343 9 319 4.24e-48 170
MS.gene45942.t1 AT5G37320 28.155 515 296 17 21 508 18 485 1.19e-38 147
MS.gene45942.t1 AT5G43240 26.273 373 200 11 161 498 13 345 2.45e-17 84.3

Find 66 sgRNAs with CRISPR-Local

Find 96 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGGTCATTTCCCTTAA+TGG 0.139288 7.2:-45104389 None:intergenic
ATTCTTAACAACAACCATTA+AGG 0.189932 7.2:+45104375 MS.gene45942:CDS
CTGCAGCAGCATTTCCTTGC+AGG 0.207573 7.2:-45103006 None:intergenic
TTAAATACGAAGTCAGTTAA+AGG 0.223806 7.2:-45103518 None:intergenic
TCAGGGTCTCAGCATTCTTA+TGG 0.239207 7.2:+45104309 MS.gene45942:intron
CCTAAACTCAAAATTTCTTT+TGG 0.263221 7.2:-45103212 None:intergenic
AATATTGAAGCAGTTCAATT+TGG 0.301162 7.2:+45102921 MS.gene45942:CDS
TAAGCTTCCATAGAGCTTCT+TGG 0.318711 7.2:-45103029 None:intergenic
TGTGACGTTAAATATGTATC+TGG 0.325833 7.2:-45103812 None:intergenic
TAAATACGAAGTCAGTTAAA+GGG 0.346351 7.2:-45103517 None:intergenic
GGCAAGGTATCTGCAGAAAT+TGG 0.349648 7.2:-45103902 None:intergenic
CAAAATTACGTTGAGAGTTA+TGG 0.356213 7.2:+45102779 MS.gene45942:CDS
ATCATACTTACTATAATTCC+CGG 0.371009 7.2:+45103936 MS.gene45942:CDS
GCTGCAGCCAAGAAGCTCTA+TGG 0.379123 7.2:+45103022 MS.gene45942:CDS
TTCTTAACAACAACCATTAA+GGG 0.385405 7.2:+45104376 MS.gene45942:CDS
CTCTATTCTTAAACTCTGGT+TGG 0.385977 7.2:-45103577 None:intergenic
ATTGTTGTGGTTCTGATGAT+AGG 0.398351 7.2:+45103987 MS.gene45942:CDS
TCTTCTCTATTCTTAAACTC+TGG 0.403389 7.2:-45103581 None:intergenic
TAATGGTTGTTGTTAAGAAT+TGG 0.422993 7.2:-45104372 None:intergenic
TAGATGTGAAATAGCATTGA+AGG 0.425604 7.2:-45104134 None:intergenic
TCTGCAGAAATTGGTAAAGT+TGG 0.429039 7.2:-45103893 None:intergenic
AGCTTCTTTACCTTGCCCTT+AGG 0.456119 7.2:+45102867 MS.gene45942:CDS
AGCTCAAATTGTGCTGCAAT+GGG 0.458184 7.2:-45103863 None:intergenic
TTCAACAAACAAAATCTCTC+TGG 0.464201 7.2:-45103657 None:intergenic
CGTATTACATATTATTGTTG+TGG 0.466001 7.2:+45103974 MS.gene45942:CDS
GGAGTGTTGCATATGCTTCA+AGG 0.486168 7.2:+45103734 MS.gene45942:CDS
GAGTCTTGCAATAGTACCTA+AGG 0.495027 7.2:-45102883 None:intergenic
GAGCTCAAATTGTGCTGCAA+TGG 0.502643 7.2:-45103864 None:intergenic
TTTAGGAAATGGCTTTGCTA+AGG 0.504499 7.2:+45103229 MS.gene45942:CDS
AGTTGTGGAGAATTTGCAAA+AGG 0.516231 7.2:+45104061 MS.gene45942:CDS
TAAGTATGATAATAATAGAC+AGG 0.516367 7.2:-45103923 None:intergenic
AAAAGGACCGTCTGTATACA+TGG 0.517518 7.2:+45104078 MS.gene45942:CDS
GCACTTCGTGTGCGAGAAGT+GGG 0.527979 7.2:+45103097 MS.gene45942:CDS
TACGAAGAGAGCGAATCCAC+CGG 0.532890 7.2:-45103955 None:intergenic
TTTCTAACCTTCCCCTTGGG+GGG 0.541458 7.2:+45103713 MS.gene45942:CDS
GATGAGATTTATATATAGAG+AGG 0.544526 7.2:-45103396 None:intergenic
TAGAGAAGAAACATCTGAAG+AGG 0.545921 7.2:+45103595 MS.gene45942:CDS
AAGCTTGAAATCACAAACAT+TGG 0.547176 7.2:+45103329 MS.gene45942:CDS
AGCACTTCGTGTGCGAGAAG+TGG 0.551108 7.2:+45103096 MS.gene45942:CDS
ACGAAGAGAGCGAATCCACC+GGG 0.552296 7.2:-45103954 None:intergenic
TCGCACACGAAGTGCTGCAA+AGG 0.553820 7.2:-45103089 None:intergenic
GCTTTAAAATCATCAAGTTG+TGG 0.562641 7.2:+45104046 MS.gene45942:CDS
TGCAATAGTACCTAAGGGCA+AGG 0.571766 7.2:-45102877 None:intergenic
TCTGTATGCTGAAGCAGTGA+AGG 0.574622 7.2:+45102824 MS.gene45942:CDS
ATCAGAAATGATTAATGTGG+CGG 0.575110 7.2:-45103255 None:intergenic
TGTTCCTCTATGTGATGTAG+AGG 0.578655 7.2:+45104168 MS.gene45942:CDS
AAGAATCAAAAGTGCAGTTG+CGG 0.582776 7.2:+45103161 MS.gene45942:CDS
ATAGCATTGAAGGATGAGGC+TGG 0.584865 7.2:-45104124 None:intergenic
AAGAAACATCTGAAGAGGGT+AGG 0.591438 7.2:+45103600 MS.gene45942:CDS
TGTCGAAATCAGCAAGCAAG+AGG 0.593953 7.2:+45103370 MS.gene45942:CDS
TCAAATTGTGCTGCAATGGG+AGG 0.601665 7.2:-45103860 None:intergenic
AGAGAAGAAACATCTGAAGA+GGG 0.601746 7.2:+45103596 MS.gene45942:CDS
AATTACGTTGAGAGTTATGG+TGG 0.607698 7.2:+45102782 MS.gene45942:CDS
AAATACGAAGTCAGTTAAAG+GGG 0.611325 7.2:-45103516 None:intergenic
TGAAATAGCATTGAAGGATG+AGG 0.620423 7.2:-45104128 None:intergenic
GGTTAGAATTGGTGTGAACG+AGG 0.622070 7.2:+45104198 MS.gene45942:CDS
TTTGTTACTACTATGGCTGA+CGG 0.624751 7.2:+45102729 None:intergenic
ATACATGGTTACAGATGACT+TGG 0.625082 7.2:+45104093 MS.gene45942:CDS
ATCATCAGAAATGATTAATG+TGG 0.625754 7.2:-45103258 None:intergenic
TTTATGCACAAATACCTGCA+AGG 0.646419 7.2:+45102992 MS.gene45942:CDS
AGTCTTGCAATAGTACCTAA+GGG 0.652846 7.2:-45102882 None:intergenic
ATGATAATAATAGACAGGCA+AGG 0.657140 7.2:-45103918 None:intergenic
TCTGTAACCATGTATACAGA+CGG 0.666083 7.2:-45104085 None:intergenic
ATACTTACTATAATTCCCGG+TGG 0.677154 7.2:+45103939 MS.gene45942:CDS
ATTTGTAAAAGCAGACGTTG+AGG 0.677697 7.2:-45104341 None:intergenic
GATTGTGTTAGAAAGCAAAG+TGG 0.712588 7.2:+45103119 MS.gene45942:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATTGTTCCAAAAACATT+AGG - chr7.2:45103296-45103315 None:intergenic 20.0%
!! TAAGTATGATAATAATAGAC+AGG - chr7.2:45103926-45103945 None:intergenic 20.0%
! AATATTGAAGCAGTTCAATT+TGG + chr7.2:45102921-45102940 MS.gene45942:CDS 25.0%
! ATCATACTTACTATAATTCC+CGG + chr7.2:45103936-45103955 MS.gene45942:CDS 25.0%
! ATCATCAGAAATGATTAATG+TGG - chr7.2:45103261-45103280 None:intergenic 25.0%
! ATTCTTAAAAATGCTCAAAC+GGG - chr7.2:45103147-45103166 None:intergenic 25.0%
! ATTCTTAACAACAACCATTA+AGG + chr7.2:45104375-45104394 MS.gene45942:CDS 25.0%
! CGTATTACATATTATTGTTG+TGG + chr7.2:45103974-45103993 MS.gene45942:CDS 25.0%
! GATGAGATTTATATATAGAG+AGG - chr7.2:45103399-45103418 None:intergenic 25.0%
! GATTCTTAAAAATGCTCAAA+CGG - chr7.2:45103148-45103167 None:intergenic 25.0%
! TAAATACGAAGTCAGTTAAA+GGG - chr7.2:45103520-45103539 None:intergenic 25.0%
! TTAAATACGAAGTCAGTTAA+AGG - chr7.2:45103521-45103540 None:intergenic 25.0%
! TTCTTAACAACAACCATTAA+GGG + chr7.2:45104376-45104395 MS.gene45942:CDS 25.0%
! TTGTTTGTTTACATGTTTCA+GGG + chr7.2:45104292-45104311 MS.gene45942:intron 25.0%
! TTTGTTTGTTTACATGTTTC+AGG + chr7.2:45104291-45104310 MS.gene45942:intron 25.0%
!! AAACTCAAAATTTCTTTTGG+TGG - chr7.2:45103212-45103231 None:intergenic 25.0%
!! AACTCAAAATTTCTTTTGGT+GGG - chr7.2:45103211-45103230 None:intergenic 25.0%
!! CCTAAACTCAAAATTTCTTT+TGG - chr7.2:45103215-45103234 None:intergenic 25.0%
!! TAATGGTTGTTGTTAAGAAT+TGG - chr7.2:45104375-45104394 None:intergenic 25.0%
!!! CCAAAAGAAATTTTGAGTTT+AGG + chr7.2:45103212-45103231 MS.gene45942:CDS 25.0%
!!! GAAATTTTGAGTTTAGGAAA+TGG + chr7.2:45103218-45103237 MS.gene45942:CDS 25.0%
!!! GATTTTAAAGCAGAATACTT+AGG - chr7.2:45104037-45104056 None:intergenic 25.0%
AAATACGAAGTCAGTTAAAG+GGG - chr7.2:45103519-45103538 None:intergenic 30.0%
AAGCTTGAAATCACAAACAT+TGG + chr7.2:45103329-45103348 MS.gene45942:CDS 30.0%
ATCAGAAATGATTAATGTGG+CGG - chr7.2:45103258-45103277 None:intergenic 30.0%
ATGATAATAATAGACAGGCA+AGG - chr7.2:45103921-45103940 None:intergenic 30.0%
CAAAATTACGTTGAGAGTTA+TGG + chr7.2:45102779-45102798 MS.gene45942:CDS 30.0%
TCTTCTCTATTCTTAAACTC+TGG - chr7.2:45103584-45103603 None:intergenic 30.0%
TGTGACGTTAAATATGTATC+TGG - chr7.2:45103815-45103834 None:intergenic 30.0%
TTCAACAAACAAAATCTCTC+TGG - chr7.2:45103660-45103679 None:intergenic 30.0%
! ACTCAAAATTTCTTTTGGTG+GGG - chr7.2:45103210-45103229 None:intergenic 30.0%
! TAGATGTGAAATAGCATTGA+AGG - chr7.2:45104137-45104156 None:intergenic 30.0%
!! AGAGAGATTTTGTTTGTTGA+AGG + chr7.2:45103659-45103678 MS.gene45942:CDS 30.0%
!! AGATTTTGTTTGTTGAAGGA+GGG + chr7.2:45103663-45103682 MS.gene45942:CDS 30.0%
!! GCTTTAAAATCATCAAGTTG+TGG + chr7.2:45104046-45104065 MS.gene45942:CDS 30.0%
!!! ATTTCAAGCTTTTGAAGTAG+TGG - chr7.2:45103320-45103339 None:intergenic 30.0%
AATTACGTTGAGAGTTATGG+TGG + chr7.2:45102782-45102801 MS.gene45942:CDS 35.0%
AGAGAAGAAACATCTGAAGA+GGG + chr7.2:45103596-45103615 MS.gene45942:CDS 35.0%
AGTCTTGCAATAGTACCTAA+GGG - chr7.2:45102885-45102904 None:intergenic 35.0%
AGTTGTGGAGAATTTGCAAA+AGG + chr7.2:45104061-45104080 MS.gene45942:CDS 35.0%
ATACATGGTTACAGATGACT+TGG + chr7.2:45104093-45104112 MS.gene45942:CDS 35.0%
ATACTTACTATAATTCCCGG+TGG + chr7.2:45103939-45103958 MS.gene45942:CDS 35.0%
ATGTGATGTAGAGGAAAAAG+TGG + chr7.2:45104177-45104196 MS.gene45942:CDS 35.0%
ATTTGTAAAAGCAGACGTTG+AGG - chr7.2:45104344-45104363 None:intergenic 35.0%
CTCTATTCTTAAACTCTGGT+TGG - chr7.2:45103580-45103599 None:intergenic 35.0%
GAGGAAAAAGTGGTTAGAAT+TGG + chr7.2:45104187-45104206 MS.gene45942:CDS 35.0%
GATTGTGTTAGAAAGCAAAG+TGG + chr7.2:45103119-45103138 MS.gene45942:CDS 35.0%
TAGAGAAGAAACATCTGAAG+AGG + chr7.2:45103595-45103614 MS.gene45942:CDS 35.0%
TCAATGGTCATTTCCCTTAA+TGG - chr7.2:45104392-45104411 None:intergenic 35.0%
TCTGCAGAAATTGGTAAAGT+TGG - chr7.2:45103896-45103915 None:intergenic 35.0%
TCTGTAACCATGTATACAGA+CGG - chr7.2:45104088-45104107 None:intergenic 35.0%
TTTATGCACAAATACCTGCA+AGG + chr7.2:45102992-45103011 MS.gene45942:CDS 35.0%
! AAGAATCAAAAGTGCAGTTG+CGG + chr7.2:45103161-45103180 MS.gene45942:CDS 35.0%
! ACTGTGATGCCTAATGTTTT+TGG + chr7.2:45103284-45103303 MS.gene45942:CDS 35.0%
! TGAAATAGCATTGAAGGATG+AGG - chr7.2:45104131-45104150 None:intergenic 35.0%
! TTTAGGAAATGGCTTTGCTA+AGG + chr7.2:45103229-45103248 MS.gene45942:CDS 35.0%
! TTTTCCTCTACATCACATAG+AGG - chr7.2:45104175-45104194 None:intergenic 35.0%
!! ATTGTTGTGGTTCTGATGAT+AGG + chr7.2:45103987-45104006 MS.gene45942:CDS 35.0%
!! CAAAGCACTGTAATGATGTA+TGG - chr7.2:45104275-45104294 None:intergenic 35.0%
!! GAGATTTTGTTTGTTGAAGG+AGG + chr7.2:45103662-45103681 MS.gene45942:CDS 35.0%
!! GATTTTGTTTGTTGAAGGAG+GGG + chr7.2:45103664-45103683 MS.gene45942:CDS 35.0%
!! TCAACGTCTGCTTTTACAAA+TGG + chr7.2:45104343-45104362 MS.gene45942:CDS 35.0%
AAAAGGACCGTCTGTATACA+TGG + chr7.2:45104078-45104097 MS.gene45942:CDS 40.0%
AAGAAACATCTGAAGAGGGT+AGG + chr7.2:45103600-45103619 MS.gene45942:CDS 40.0%
AGCTCAAATTGTGCTGCAAT+GGG - chr7.2:45103866-45103885 None:intergenic 40.0%
GAGTCTTGCAATAGTACCTA+AGG - chr7.2:45102886-45102905 None:intergenic 40.0%
TAAGCTTCCATAGAGCTTCT+TGG - chr7.2:45103032-45103051 None:intergenic 40.0%
TGTTCCTCTATGTGATGTAG+AGG + chr7.2:45104168-45104187 MS.gene45942:CDS 40.0%
! AGTTTTCTAACCTTCCCCTT+GGG + chr7.2:45103710-45103729 MS.gene45942:CDS 40.0%
! TAGTTTTCTAACCTTCCCCT+TGG + chr7.2:45103709-45103728 MS.gene45942:CDS 40.0%
AGCTTCTTTACCTTGCCCTT+AGG + chr7.2:45102867-45102886 MS.gene45942:CDS 45.0%
GAGCTCAAATTGTGCTGCAA+TGG - chr7.2:45103867-45103886 None:intergenic 45.0%
GGTTAGAATTGGTGTGAACG+AGG + chr7.2:45104198-45104217 MS.gene45942:CDS 45.0%
TCAAATTGTGCTGCAATGGG+AGG - chr7.2:45103863-45103882 None:intergenic 45.0%
TCAGGGTCTCAGCATTCTTA+TGG + chr7.2:45104309-45104328 MS.gene45942:intron 45.0%
TCTGTATGCTGAAGCAGTGA+AGG + chr7.2:45102824-45102843 MS.gene45942:CDS 45.0%
TGCAATAGTACCTAAGGGCA+AGG - chr7.2:45102880-45102899 None:intergenic 45.0%
TGTCGAAATCAGCAAGCAAG+AGG + chr7.2:45103370-45103389 MS.gene45942:CDS 45.0%
! ATAGCATTGAAGGATGAGGC+TGG - chr7.2:45104127-45104146 None:intergenic 45.0%
! CTTTTGGTGGGGACATTACT+AGG - chr7.2:45103199-45103218 None:intergenic 45.0%
! GGCAAGGTATCTGCAGAAAT+TGG - chr7.2:45103905-45103924 None:intergenic 45.0%
! GTTTTCTAACCTTCCCCTTG+GGG + chr7.2:45103711-45103730 MS.gene45942:CDS 45.0%
! TTTTCTAACCTTCCCCTTGG+GGG + chr7.2:45103712-45103731 MS.gene45942:CDS 45.0%
!! GGAGTGTTGCATATGCTTCA+AGG + chr7.2:45103734-45103753 MS.gene45942:CDS 45.0%
ATATGCAACACTCCCCCCAA+GGG - chr7.2:45103728-45103747 None:intergenic 50.0%
TACGAAGAGAGCGAATCCAC+CGG - chr7.2:45103958-45103977 None:intergenic 50.0%
TTTCTAACCTTCCCCTTGGG+GGG + chr7.2:45103713-45103732 MS.gene45942:CDS 50.0%
ACGAAGAGAGCGAATCCACC+GGG - chr7.2:45103957-45103976 None:intergenic 55.0%
AGCACTTCGTGTGCGAGAAG+TGG + chr7.2:45103096-45103115 MS.gene45942:CDS 55.0%
CATATGCAACACTCCCCCCA+AGG - chr7.2:45103729-45103748 None:intergenic 55.0%
CTGCAGCAGCATTTCCTTGC+AGG - chr7.2:45103009-45103028 None:intergenic 55.0%
GCACTTCGTGTGCGAGAAGT+GGG + chr7.2:45103097-45103116 MS.gene45942:CDS 55.0%
GCTGCAGCCAAGAAGCTCTA+TGG + chr7.2:45103022-45103041 MS.gene45942:CDS 55.0%
TATGCAACACTCCCCCCAAG+GGG - chr7.2:45103727-45103746 None:intergenic 55.0%
!! TCGCACACGAAGTGCTGCAA+AGG - chr7.2:45103092-45103111 None:intergenic 55.0%
CAACACTCCCCCCAAGGGGA+AGG - chr7.2:45103723-45103742 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 45102741 45104411 45102741 ID=MS.gene45942
chr7.2 mRNA 45102741 45104411 45102741 ID=MS.gene45942.t1;Parent=MS.gene45942
chr7.2 exon 45102741 45103436 45102741 ID=MS.gene45942.t1.exon1;Parent=MS.gene45942.t1
chr7.2 CDS 45102741 45103436 45102741 ID=cds.MS.gene45942.t1;Parent=MS.gene45942.t1
chr7.2 exon 45103479 45104219 45103479 ID=MS.gene45942.t1.exon2;Parent=MS.gene45942.t1
chr7.2 CDS 45103479 45104219 45103479 ID=cds.MS.gene45942.t1;Parent=MS.gene45942.t1
chr7.2 exon 45104313 45104411 45104313 ID=MS.gene45942.t1.exon3;Parent=MS.gene45942.t1
chr7.2 CDS 45104313 45104411 45104313 ID=cds.MS.gene45942.t1;Parent=MS.gene45942.t1
Gene Sequence

>MS.gene45942

ATGGCTGACGGTGCAACTGAATCTGTTGAACAAAATGACAAAATTACGTTGAGAGTTATGGTGGATAAAGAAAGTAACAAAGTTCTGTATGCTGAAGCAGTGAAGGATTTTGTTGATGTTCTCTTAAGCTTCTTTACCTTGCCCTTAGGTACTATTGCAAGACTCGTTGCTACAGACTCAAATATTGAAGCAGTTCAATTTGGCAGCATTAGCTCACTGTATCAAAGTGTAAAAGATCTTGATCAACAATATTTATGCACAAATACCTGCAAGGAAATGCTGCTGCAGCCAAGAAGCTCTATGGAAGCTTATTGTCAAAAGCTCAAACTGAATATAGACGACACAGAACCTTTGCAGCACTTCGTGTGCGAGAAGTGGGATTGTGTTAGAAAGCAAAGTGGAGCCCGTTTGAGCATTTTTAAGAATCAAAAGTGCAGTTGCGGAAAAGTAATGAACCTAGTAATGTCCCCACCAAAAGAAATTTTGAGTTTAGGAAATGGCTTTGCTAAGGAAACCGCCACATTAATCATTTCTGATGATCTTACTGTGATGCCTAATGTTTTTGGAACAATTATACCACTACTTCAAAAGCTTGAAATCACAAACATTGGTGCTATTGTTGAAGAATCTGTCGAAATCAGCAAGCAAGAGGCATCCTCTCTATATATAAATCTCATCTTTTTATATCATTATTTTGTTAGTTGATTTTTTTTTCTCATCAAATATTCATTTTTGTAGATAACTGATATTCTCAAGTTGTCATTCGTCTCAAAGACCCCTTTAACTGACTTCGTATTTAAGAAGAAACATTTCTGTGATGAATTTGTCAAGACAAACCAACCAGAGTTTAAGAATAGAGAAGAAACATCTGAAGAGGGTAGGCAGATGTCTGTGAAAGTTTTGCAAAGAAAATCAACCAGAGAGATTTTGTTTGTTGAAGGAGGGGTAGATTTTATTGACTTTATTTTTAGTTTTCTAACCTTCCCCTTGGGGGGAGTGTTGCATATGCTTCAAGGATTCTCTTCTTTAAGCTGCATTGATAATTTATATAAAAGCGTAACTGAGTTGAGTCCAGATACATATTTAACGTCACAAGAACTTAAAGATAAACTAACTAAGCCTCCCATTGCAGCACAATTTGAGCTCAGCAATCCAACTTTACCAATTTCTGCAGATACCTTGCCTGTCTATTATTATCATACTTACTATAATTCCCGGTGGATTCGCTCTCTTCGTATTACATATTATTGTTGTGGTTCTGATGATAGGTGTGTACTTTTGAATTTTGTTGATCCTAAGTATTCTGCTTTAAAATCATCAAGTTGTGGAGAATTTGCAAAAGGACCGTCTGTATACATGGTTACAGATGACTTGGTTGTGACTCCAGCCTCATCCTTCAATGCTATTTCACATCTAAAGAGTTTAAATGTTCCTCTATGTGATGTAGAGGAAAAAGTGGTTAGAATTGGTGTGAACGAGGTAATTCACGACTTACGACTTTTCACGTTGTTATCGCAATTAATTTTCATTTCCATACATCATTACAGTGCTTTGTTTGTTTACATGTTTCAGGGTCTCAGCATTCTTATGGCTTCATTGACCTCAACGTCTGCTTTTACAAATGGTCTCAACCAATTCTTAACAACAACCATTAAGGGAAATGACCATTGA
Protein sequence

>MS.gene45942.t1

MADGATESVEQNDKITLRVMVDKESNKVLYAEAVKDFVDVLLSFFTLPLGTIARLVATDSNIEAVQFGSISSLYQSVKDLDQQYLCTNTCKEMLLQPRSSMEAYCQKLKLNIDDTEPLQHFVCEKWDCVRKQSGARLSIFKNQKCSCGKVMNLVMSPPKEILSLGNGFAKETATLIISDDLTVMPNVFGTIIPLLQKLEITNIGAIVEESVEISKQEASSLYINLIFLYHYFITDILKLSFVSKTPLTDFVFKKKHFCDEFVKTNQPEFKNREETSEEGRQMSVKVLQRKSTREILFVEGGVDFIDFIFSFLTFPLGGVLHMLQGFSSLSCIDNLYKSVTELSPDTYLTSQELKDKLTKPPIAAQFELSNPTLPISADTLPVYYYHTYYNSRWIRSLRITYYCCGSDDRCVLLNFVDPKYSALKSSSCGEFAKGPSVYMVTDDLVVTPASSFNAISHLKSLNVPLCDVEEKVVRIGVNEGLSILMASLTSTSAFTNGLNQFLTTTIKGNDH