AlfalfaGEDB | MS.gene84618

M. sativa cultivar XinJiangDaYe / MS.gene84618

KEGG: -
GO: -
PFAM: PF05056.15

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84618.t1	XP_013449059.1	54.3	429	137	7	1	372	66	492	6.70E-110	407.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84618.t1	A0A072U0X6	54.3	429	137	7	1	372	66	492	4.8e-110	407.5

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
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PPI:

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Gene1	Gene2	Type
MS.gene001103	MS.gene84618	PPI
MS.gene001108	MS.gene84618	PPI
MS.gene001109	MS.gene84618	PPI
MS.gene007488	MS.gene84618	PPI
MS.gene009400	MS.gene84618	PPI
MS.gene010675	MS.gene84618	PPI
MS.gene037535	MS.gene84618	PPI
MS.gene037539	MS.gene84618	PPI
MS.gene037540	MS.gene84618	PPI
MS.gene037545	MS.gene84618	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84618.t1	MTR_7g066260	58.102	432	116	9	1	372	66	492	2.71e-160	459
MS.gene84618.t1	MTR_7g066340	51.429	420	150	8	1	372	63	476	2.39e-129	380
MS.gene84618.t1	MTR_7g066360	55.116	430	118	12	1	371	65	478	4.95e-125	369
MS.gene84618.t1	MTR_7g066290	53.634	399	109	7	3	358	68	433	3.80e-123	362
MS.gene84618.t1	MTR_7g066400	49.370	397	148	7	1	354	47	433	1.36e-118	351
MS.gene84618.t1	MTR_7g066350	52.538	394	139	11	1	354	60	445	1.40e-117	349
MS.gene84618.t1	MTR_7g066570	50.594	421	140	12	1	358	65	480	1.44e-115	348
MS.gene84618.t1	MTR_7g012680	52.699	389	145	12	1	358	65	445	4.87e-112	335
MS.gene84618.t1	MTR_7g058710	45.721	444	156	11	1	369	51	484	2.21e-105	319
MS.gene84618.t1	MTR_1g041315	48.346	393	146	9	1	342	65	451	6.32e-105	318

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene84618.t1	AT5G01140	28.276	435	244	11	4	380	47	471	1.02e-34	133
MS.gene84618.t1	AT5G01120	27.069	447	245	13	4	371	63	507	3.35e-29	118
MS.gene84618.t1	AT5G01130	28.365	416	223	15	4	371	63	451	9.79e-28	114
MS.gene84618.t1	AT5G01150	27.945	433	240	13	3	371	62	486	2.54e-27	113
MS.gene84618.t1	AT5G43240	29.630	459	228	20	1	371	60	511	6.64e-27	112
MS.gene84618.t1	AT5G43240	29.630	459	228	20	1	371	60	511	6.64e-27	112
MS.gene84618.t1	AT5G43240	29.630	459	228	20	1	371	60	511	6.64e-27	112
MS.gene84618.t1	AT3G09140	28.046	435	221	15	4	354	63	489	5.55e-26	109
MS.gene84618.t1	AT3G09110	29.478	268	141	10	4	231	63	322	1.19e-20	92.4
MS.gene84618.t1	AT5G43240	30.449	312	162	12	103	371	68	367	3.53e-15	76.6

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Find 83 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCGACATATGCAGATGA+GGG	0.619206	7.3:+38797473	MS.gene84618:CDS
AAAGCGTGCAAGATCTTGAT+GGG	0.571030	7.3:+38796923	MS.gene84618:CDS
AAAGGGCTTACCATCTGAAG+AGG	0.611770	7.3:+38797529	MS.gene84618:CDS
AAATCCATTGTCAAAGGAAC+TGG	0.340488	7.3:-38797151	None:intergenic
AACGGCCTCAAACACTTCTT+AGG	0.313541	7.3:+38798208	MS.gene84618:CDS
AAGAAATGCTAATCAAGCCA+AGG	0.632669	7.3:+38796971	MS.gene84618:CDS
AAGCCAAGGAACTCCATGGA+AGG	0.640402	7.3:+38796985	MS.gene84618:CDS
AAGCCCTCATCTGCATATGT+CGG	0.607568	7.3:-38797476	None:intergenic
AAGGGCTTACCATCTGAAGA+GGG	0.661118	7.3:+38797530	MS.gene84618:CDS
AATATCGAAGCAATGAAATT+TGG	0.294760	7.3:+38796880	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGATCTGGTAAAAGGTTT+AGG	+	chr7.3:38797225-38797244	MS.gene84618:intron	30.0%
AATGTTAATGAGTGCTCTTA+CGG	-	chr7.3:38798434-38798453	None:intergenic	30.0%
AATTTCCTCAATGTCATTCA+GGG	-	chr7.3:38798026-38798045	None:intergenic	30.0%
AGAAGATGGTAGTAAATTAG+TGG	-	chr7.3:38798656-38798675	None:intergenic	30.0%
ATACAGTACTTTATCTGTGA+GGG	+	chr7.3:38797048-38797067	MS.gene84618:CDS	30.0%
ATTAAGCTTGAAGAAACCTA+TGG	+	chr7.3:38799241-38799260	MS.gene84618:CDS	30.0%
CTACCATCTTCTCATAAAAA+TGG	+	chr7.3:38798664-38798683	MS.gene84618:intron	30.0%
GAGGAAATTGTCGTTAATAT+TGG	+	chr7.3:38798037-38798056	MS.gene84618:CDS	30.0%
GGTAGTAAATTAGTGGTTAA+TGG	-	chr7.3:38798649-38798668	None:intergenic	30.0%
AAATCCATTGTCAAAGGAAC+TGG	-	chr7.3:38797154-38797173	None:intergenic	35.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.3	gene	38796892	38799271	38796892	ID=MS.gene84618
chr7.3	mRNA	38796892	38799271	38796892	ID=MS.gene84618.t1;Parent=MS.gene84618
chr7.3	exon	38796892	38797233	38796892	ID=MS.gene84618.t1.exon1;Parent=MS.gene84618.t1
chr7.3	CDS	38796892	38797233	38796892	ID=cds.MS.gene84618.t1;Parent=MS.gene84618.t1
chr7.3	exon	38797407	38798069	38797407	ID=MS.gene84618.t1.exon2;Parent=MS.gene84618.t1
chr7.3	CDS	38797407	38798069	38797407	ID=cds.MS.gene84618.t1;Parent=MS.gene84618.t1
chr7.3	exon	38798160	38798229	38798160	ID=MS.gene84618.t1.exon3;Parent=MS.gene84618.t1
chr7.3	CDS	38798160	38798229	38798160	ID=cds.MS.gene84618.t1;Parent=MS.gene84618.t1
chr7.3	exon	38799201	38799271	38799201	ID=MS.gene84618.t1.exon4;Parent=MS.gene84618.t1
chr7.3	CDS	38799201	38799271	38799201	ID=cds.MS.gene84618.t1;Parent=MS.gene84618.t1

Gene Sequence

>MS.gene84618

ATGAAATTTGGCAGCATTAGCTCACTTTATCAAAGCGTGCAAGATCTTGATGGGAAATATTTATGGTCACAGGAATGCAAAGAAATGCTAATCAAGCCAAGGAACTCCATGGAAGGTAGTTGTTGGAAGCTCAAACTGAACATCGATGACACACCGATACAGTACTTTATCTGTGAGGGCTGGATTATGAAGTGTGTGAGTATTTTTAGGAACCAGAAATGCCTTTGTGGAACGTATTGTAACAGAGGAGTTACCTTTCCCAGTTCCTTTGACAATGGATTTGTTAAAGATACGGCTAGTTTTATAATTCATGACGATCTTTCTGTAATGCCTAATGATCTGGTAAAAGGTTTAGGTTTACTGCAGATGAACGGAATCAATGAGATTGCAGATATCGAGAGAAAAACACTACTTATCAGCAAGAAGGAGGCATGATTTCTCTGGATTTTCTAAATTTCTATATTTTTATCACTGGTGTTGATTTTTTAAATGAATATCTATGTTTATATGTGCAGGTAGTCGATCTTCTCAAGTTGTCCTTGCTCTCGAAGACTCCTCTGACAGACTTTATCTTAAAGAAGAAACCGACATATGCAGATGAGGGCTTACCATCTGAAGAGGGTAAGATTGGTATTGGAAAGGGCTTACCATCTGAAGAGGGCAAGCAGATGCTGATAAAACTACTGGTTAGAAAATCAACTAGAAACATTCTGTTTGCTATAGCAGAGGAAGATTTTGCGGCTGACTTTCTTTTCAGTTTTATCACTTTTCCTCTAGGAGGAGTGTTGCAAATGCTGGAAGGATTCTCCTCTTTAAGCTGCATTGAGATTTTATATAAAAGCATGACTGAGTTGTGTCCAGAGAGATGTTTACGGTCAGATGAAGTTAAAAACAAACTAAGTAAGCCTCAAATTTTTCCTACATATGTAGTAAGGAACCAGATATTACCAATCAAAACAGCTGTGCTTACTTCCAAAGACGGTGGCAAGGTCTTGAAATTTGTTGATCCCAAATCCCCTGTTTCTGGAGGATATGTCACAGGACCAACAACGATTATGGTGACAGACGACTTGGTTGTGACTCCAATGTCATCGTTTGATGGTGTTTCATATCTAGAAAGAATGAAGGTCCCCCTGAATGACATTGAGGAAATTGTCGTTAATATTGGAGTGAAGGAGGTAAAGGGATTGTCTGAGACATTATTTAGCATAATTTTTAATTTTAACATTTCTCAGATTGCATAATTTGTATCTATGGTGATGGTGCAGGGTCTCAGCATACTAAAAGCTTCATTGACCTCAACATCTGCTTTGACTAACGGCCTCAAACACTTCTTAGGTTAGTTCAATATTCAACCAAATTATCAAAATCTCGTCATACATTATAATCAGCGTCTTGCTAACTAGTGTCCTAAGGGAAATGGTTAAGGAATCCTTTAATAGAAATTTTTCCTTGGAAATATAAGTTTTTACTTTTGTGTTATCAATAATTACATAACTTTTTAATGCAAACTTACTAATTTTAACACTTTAACCAATGCCGTAAGAGCACTCATTAACATTCTCCTTATAATTATAATAAAAACGATATTAAAGTTCATATACATGTGTTTTAATTTATCTTTAGATAATGACGTTGTGCTTTTATTCAAAAGTCGCATGTGAAATAGTACTGTACTCCTGTCCAAGTAGTAGTAGGTAGTTTGGTCTAGTAGCTAAGGGAAACTGAATGAGTTAAGTACAATAAGACTATAACCATTAACCACTAATTTACTACCATCTTCTCATAAAAATGGTTAAAAAGATTGGATTTCCATTTATTTTTTAACATTTGAGAGTAATTTAGTCTCTGATAATTTTTCGTTGATTTTTCTGTAAAATATTCTGAATTACATCAATGATTTCTTTACATTTCTTATCAATATTATTTCTTCTAGCATGATTAGTATCTTACTTGTTTATAGTACTTTATATATTTGCGTAATGAAAGGTAATCATATATGTCATGTACATATGATTATTAAAGCAAATGTGGAATGTATAGAGGACAGTTAATGTTGAGAAAATATAGTGATAAAAACCAAACATAGAAAAAGAAGTGAAGGAAGAAAGATTGAAATGTAAGAAGGGAAGAGAGAAAATCAAGAACGGTGAGAAATGATCTTTTTTCTTTAATCATGGTGACTTTTTTCTTGTTAACAGTTTTGAATTGGTACTCAATACTAAATTTACTCAATTTTATGTGTGCATGTACATGGTATGAAGTATACCGGTTCTGTCTAATTTGTGATCTACTGCATGCTTTAACAGATGGCCCAATAAGCAACCTGAAGAAGCCAAAAGAAGAAAAATTAAGCTTGAAGAAACCTATGGTGTTATGA

Protein sequence

>MS.gene84618.t1

MKFGSISSLYQSVQDLDGKYLWSQECKEMLIKPRNSMEGSCWKLKLNIDDTPIQYFICEGWIMKCVSIFRNQKCLCGTYCNRGVTFPSSFDNGFVKDTASFIIHDDLSVMPNDLVVDLLKLSLLSKTPLTDFILKKKPTYADEGLPSEEGKIGIGKGLPSEEGKQMLIKLLVRKSTRNILFAIAEEDFAADFLFSFITFPLGGVLQMLEGFSSLSCIEILYKSMTELCPERCLRSDEVKNKLSKPQIFPTYVVRNQILPIKTAVLTSKDGGKVLKFVDPKSPVSGGYVTGPTTIMVTDDLVVTPMSSFDGVSYLERMKVPLNDIEEIVVNIGVKEGLSILKASLTSTSALTNGLKHFLDGPISNLKKPKEEKLSLKKPMVL