AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene84618

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84618.t1 MTR_7g066260 58.102 432 116 9 1 372 66 492 2.71e-160 459
MS.gene84618.t1 MTR_7g066340 51.429 420 150 8 1 372 63 476 2.39e-129 380
MS.gene84618.t1 MTR_7g066360 55.116 430 118 12 1 371 65 478 4.95e-125 369
MS.gene84618.t1 MTR_7g066290 53.634 399 109 7 3 358 68 433 3.80e-123 362
MS.gene84618.t1 MTR_7g066400 49.370 397 148 7 1 354 47 433 1.36e-118 351
MS.gene84618.t1 MTR_7g066350 52.538 394 139 11 1 354 60 445 1.40e-117 349
MS.gene84618.t1 MTR_7g066570 50.594 421 140 12 1 358 65 480 1.44e-115 348
MS.gene84618.t1 MTR_7g012680 52.699 389 145 12 1 358 65 445 4.87e-112 335
MS.gene84618.t1 MTR_7g058710 45.721 444 156 11 1 369 51 484 2.21e-105 319
MS.gene84618.t1 MTR_1g041315 48.346 393 146 9 1 342 65 451 6.32e-105 318
MS.gene84618.t1 MTR_7g066310 47.165 388 150 10 1 372 58 406 1.05e-99 301
MS.gene84618.t1 MTR_7g066580 46.384 401 159 11 4 355 49 442 4.35e-99 301
MS.gene84618.t1 MTR_7g066280 44.418 421 149 12 29 372 1 413 3.83e-95 290
MS.gene84618.t1 MTR_1g014060 44.619 381 141 10 1 358 51 384 7.85e-87 268
MS.gene84618.t1 MTR_7g066410 38.816 456 177 12 1 358 61 512 1.65e-80 256
MS.gene84618.t1 MTR_7g058700 42.373 413 122 10 1 358 570 921 1.88e-80 265
MS.gene84618.t1 MTR_7g066430 37.389 452 200 12 1 374 55 501 1.69e-79 253
MS.gene84618.t1 MTR_2g029400 38.631 409 122 9 1 348 65 405 8.81e-73 233
MS.gene84618.t1 MTR_7g066480 38.832 394 160 11 4 358 70 421 5.64e-67 218
MS.gene84618.t1 MTR_7g062280 37.182 433 183 11 4 358 64 485 9.56e-67 219
MS.gene84618.t1 MTR_7g066680 46.000 300 99 6 115 354 38 334 1.42e-66 214
MS.gene84618.t1 MTR_7g062300 36.993 419 185 11 4 356 66 471 4.72e-66 217
MS.gene84618.t1 MTR_7g063920 37.192 406 164 6 4 358 65 430 1.76e-64 212
MS.gene84618.t1 MTR_7g063920 29.064 203 117 8 160 352 6 191 6.09e-12 67.0
MS.gene84618.t1 MTR_7g063660 33.882 425 195 10 4 358 63 471 6.12e-63 209
MS.gene84618.t1 MTR_7g063830 36.908 401 181 12 4 358 64 438 1.34e-61 204
MS.gene84618.t1 MTR_7g063820 36.569 443 192 14 1 372 61 485 3.22e-61 204
MS.gene84618.t1 MTR_7g066490 37.467 379 172 10 4 358 70 407 4.91e-60 200
MS.gene84618.t1 MTR_7g063880 36.754 419 182 16 3 358 64 462 7.18e-59 198
MS.gene84618.t1 MTR_7g063840 34.772 417 197 12 4 358 64 467 8.30e-58 195
MS.gene84618.t1 MTR_7g063900 36.279 430 188 12 4 358 64 482 5.53e-57 194
MS.gene84618.t1 MTR_3g007740 36.500 400 195 11 1 358 60 442 2.43e-56 191
MS.gene84618.t1 MTR_3g007740 29.004 231 135 10 164 376 8 227 1.51e-11 65.9
MS.gene84618.t1 MTR_4g019310 33.408 449 199 16 3 371 69 497 6.97e-56 191
MS.gene84618.t1 MTR_3g065200 36.735 392 168 12 4 345 47 408 7.42e-56 190
MS.gene84618.t1 MTR_7g063890 36.364 429 188 11 4 358 81 498 4.14e-52 181
MS.gene84618.t1 MTR_7g063670 34.140 413 202 12 4 369 69 458 3.10e-50 175
MS.gene84618.t1 MTR_7g066390 56.688 157 37 2 207 362 1 127 1.16e-48 162
MS.gene84618.t1 MTR_4g017830 30.631 444 214 17 3 361 70 504 6.90e-44 159
MS.gene84618.t1 MTR_4g019340 32.282 412 199 14 3 346 102 501 1.95e-42 155
MS.gene84618.t1 MTR_7g063720 41.860 215 113 4 155 358 13 226 4.88e-42 147
MS.gene84618.t1 MTR_4g017440 30.435 437 213 16 5 361 80 505 1.17e-41 153
MS.gene84618.t1 MTR_4g017410 30.115 435 229 19 5 371 73 500 9.36e-39 145
MS.gene84618.t1 MTR_4g017610 29.481 424 208 15 3 355 73 476 1.15e-38 144
MS.gene84618.t1 MTR_4g017550 30.394 431 208 18 5 355 52 470 1.71e-37 141
MS.gene84618.t1 MTR_4g017470 27.523 436 202 13 3 361 75 473 1.34e-27 114
MS.gene84618.t1 MTR_7g100420 31.661 319 150 8 95 359 94 398 1.77e-25 107
MS.gene84618.t1 MTR_7g063850 34.375 224 110 6 165 358 66 282 4.54e-25 103
MS.gene84618.t1 MTR_4g019330 32.995 197 88 7 179 371 32 188 3.45e-17 79.3
MS.gene84618.t1 MTR_7g063760 53.846 65 29 1 295 358 3 67 5.83e-16 72.4
MS.gene84618.t1 MTR_7g062270 33.071 127 77 4 4 123 64 189 1.55e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene84618.t1 AT5G01140 28.276 435 244 11 4 380 47 471 1.02e-34 133
MS.gene84618.t1 AT5G01120 27.069 447 245 13 4 371 63 507 3.35e-29 118
MS.gene84618.t1 AT5G01130 28.365 416 223 15 4 371 63 451 9.79e-28 114
MS.gene84618.t1 AT5G01150 27.945 433 240 13 3 371 62 486 2.54e-27 113
MS.gene84618.t1 AT5G43240 29.630 459 228 20 1 371 60 511 6.64e-27 112
MS.gene84618.t1 AT5G43240 29.630 459 228 20 1 371 60 511 6.64e-27 112
MS.gene84618.t1 AT5G43240 29.630 459 228 20 1 371 60 511 6.64e-27 112
MS.gene84618.t1 AT3G09140 28.046 435 221 15 4 354 63 489 5.55e-26 109
MS.gene84618.t1 AT3G09110 29.478 268 141 10 4 231 63 322 1.19e-20 92.4
MS.gene84618.t1 AT5G43240 30.449 312 162 12 103 371 68 367 3.53e-15 76.6
MS.gene84618.t1 AT3G09140 30.000 270 151 9 115 354 256 517 1.11e-14 75.9
MS.gene84618.t1 AT3G09120 29.389 262 135 9 3 220 58 313 2.61e-14 73.6

Find 83 sgRNAs with CRISPR-Local

Find 145 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATCCCAAATCCCCTGTTTC+TGG 0.158108 7.3:+38797896 MS.gene84618:CDS
ACGTTCCACAAAGGCATTTC+TGG 0.186386 7.3:-38797104 None:intergenic
GGCTTCTTCAGGTTGCTTAT+TGG 0.195419 7.3:-38799206 None:intergenic
CAATTTCCTCAATGTCATTC+AGG 0.211667 7.3:-38798024 None:intergenic
GCTTCTTCAGGTTGCTTATT+GGG 0.212837 7.3:-38799205 None:intergenic
ATCTTGATGGGAAATATTTA+TGG 0.233308 7.3:+38796935 MS.gene84618:CDS
CAAGACCTTGCCACCGTCTT+TGG 0.234582 7.3:-38797864 None:intergenic
TCCTCCAGAAACAGGGGATT+TGG 0.246382 7.3:-38797900 None:intergenic
AATATCGAAGCAATGAAATT+TGG 0.294760 7.3:+38796880 None:intergenic
GAGGAAATTGTCGTTAATAT+TGG 0.297073 7.3:+38798037 MS.gene84618:CDS
CACAGGACCAACAACGATTA+TGG 0.311810 7.3:+38797928 MS.gene84618:CDS
AACGGCCTCAAACACTTCTT+AGG 0.313541 7.3:+38798208 MS.gene84618:CDS
AAATCCATTGTCAAAGGAAC+TGG 0.340488 7.3:-38797151 None:intergenic
GTGACATATCCTCCAGAAAC+AGG 0.363395 7.3:-38797908 None:intergenic
CCTCCAGAAACAGGGGATTT+GGG 0.381514 7.3:-38797899 None:intergenic
GAAGAGGGTAAGATTGGTAT+TGG 0.419917 7.3:+38797506 MS.gene84618:CDS
TTCTGTAATGCCTAATGATC+TGG 0.425766 7.3:+38797212 MS.gene84618:CDS
CCATCTGAAGAGGGTAAGAT+TGG 0.438944 7.3:+38797500 MS.gene84618:CDS
CAATGGATTTGTTAAAGATA+CGG 0.457991 7.3:+38797164 MS.gene84618:CDS
AGGAGGAGTGTTGCAAATGC+TGG 0.460508 7.3:+38797667 MS.gene84618:CDS
CAAAGCGTGCAAGATCTTGA+TGG 0.464561 7.3:+38796922 MS.gene84618:CDS
CTACCTTCCATGGAGTTCCT+TGG 0.467829 7.3:-38796988 None:intergenic
TCTGTCACCATAATCGTTGT+TGG 0.469184 7.3:-38797935 None:intergenic
TTTCCCAGTTCCTTTGACAA+TGG 0.477565 7.3:+38797147 MS.gene84618:CDS
GGTAAGATTGGTATTGGAAA+GGG 0.492219 7.3:+38797512 MS.gene84618:CDS
TGTGTCCAGAGAGATGTTTA+CGG 0.497631 7.3:+38797744 MS.gene84618:CDS
AATTTCCTCAATGTCATTCA+GGG 0.500560 7.3:-38798023 None:intergenic
TGGTTCCTTACTACATATGT+AGG 0.500662 7.3:-38797809 None:intergenic
AATCTCAATGCAGCTTAAAG+AGG 0.513393 7.3:-38797699 None:intergenic
CTTCCAACAACTACCTTCCA+TGG 0.516125 7.3:-38796998 None:intergenic
AGGAACCAGAAATGCCTTTG+TGG 0.516773 7.3:+38797099 MS.gene84618:CDS
AGTACTTTATCTGTGAGGGC+TGG 0.520016 7.3:+38797052 MS.gene84618:CDS
ATTAAGCTTGAAGAAACCTA+TGG 0.523741 7.3:+38799241 MS.gene84618:CDS
TGGGAAATATTTATGGTCAC+AGG 0.525705 7.3:+38796942 MS.gene84618:CDS
GCAGATGCTGATAAAACTAC+TGG 0.526501 7.3:+38797556 MS.gene84618:CDS
GATTATGGTGACAGACGACT+TGG 0.531122 7.3:+38797943 MS.gene84618:CDS
ACTCCAATGTCATCGTTTGA+TGG 0.532598 7.3:+38797971 MS.gene84618:CDS
TGTCGTTAATATTGGAGTGA+AGG 0.536937 7.3:+38798045 MS.gene84618:CDS
ACTCCATGGAAGGTAGTTGT+TGG 0.537357 7.3:+38796995 MS.gene84618:CDS
TTTAACAAATCCATTGTCAA+AGG 0.538971 7.3:-38797157 None:intergenic
TCTGACCGTAAACATCTCTC+TGG 0.540356 7.3:-38797749 None:intergenic
CGTTAATATTGGAGTGAAGG+AGG 0.542677 7.3:+38798048 MS.gene84618:CDS
ACTAACCTAAGAAGTGTTTG+AGG 0.547456 7.3:-38798213 None:intergenic
CAGAGGAGTCTTCGAGAGCA+AGG 0.548998 7.3:-38797429 None:intergenic
ATCTGCTTGCCCTCTTCAGA+TGG 0.551707 7.3:-38797539 None:intergenic
TCAACATCTGCTTTGACTAA+CGG 0.558327 7.3:+38798190 MS.gene84618:CDS
GGGTAAGATTGGTATTGGAA+AGG 0.563253 7.3:+38797511 MS.gene84618:CDS
ATTGTCAAAGGAACTGGGAA+AGG 0.564739 7.3:-38797145 None:intergenic
AAAGCGTGCAAGATCTTGAT+GGG 0.571030 7.3:+38796923 MS.gene84618:CDS
CTAATCAGTCATAACACCAT+AGG 0.579304 7.3:-38799257 None:intergenic
TTCATATCTAGAAAGAATGA+AGG 0.581383 7.3:+38797997 MS.gene84618:CDS
CCAATCTTACCCTCTTCAGA+TGG 0.593770 7.3:-38797500 None:intergenic
GTTTCTGGAGGATATGTCAC+AGG 0.594537 7.3:+38797911 MS.gene84618:CDS
TGAGGGCTTACCATCTGAAG+AGG 0.596168 7.3:+38797490 MS.gene84618:CDS
AATCCATTGTCAAAGGAACT+GGG 0.597007 7.3:-38797150 None:intergenic
CCCAAATCCCCTGTTTCTGG+AGG 0.597019 7.3:+38797899 MS.gene84618:CDS
GAAACCGACATATGCAGATG+AGG 0.597597 7.3:+38797472 MS.gene84618:CDS
AATCAAGCCAAGGAACTCCA+TGG 0.600318 7.3:+38796981 MS.gene84618:CDS
TGACATATCCTCCAGAAACA+GGG 0.601751 7.3:-38797907 None:intergenic
CATTCTGTTTGCTATAGCAG+AGG 0.606913 7.3:+38797598 MS.gene84618:CDS
AAGCCCTCATCTGCATATGT+CGG 0.607568 7.3:-38797476 None:intergenic
TCACAGATAAAGTACTGTAT+CGG 0.608824 7.3:-38797045 None:intergenic
TTTAAGATAAAGTCTGTCAG+AGG 0.610371 7.3:-38797446 None:intergenic
ACACCATCAAACGATGACAT+TGG 0.611312 7.3:-38797974 None:intergenic
AAAGGGCTTACCATCTGAAG+AGG 0.611770 7.3:+38797529 MS.gene84618:CDS
ATACAGTACTTTATCTGTGA+GGG 0.612215 7.3:+38797048 MS.gene84618:CDS
TACTTCCAAAGACGGTGGCA+AGG 0.613172 7.3:+38797859 MS.gene84618:CDS
AAACCGACATATGCAGATGA+GGG 0.619206 7.3:+38797473 MS.gene84618:CDS
AAGAAATGCTAATCAAGCCA+AGG 0.632669 7.3:+38796971 MS.gene84618:CDS
GCTGTGCTTACTTCCAAAGA+CGG 0.639419 7.3:+38797851 MS.gene84618:CDS
GGAGTGTTGCAAATGCTGGA+AGG 0.639897 7.3:+38797671 MS.gene84618:CDS
AAGCCAAGGAACTCCATGGA+AGG 0.640402 7.3:+38796985 MS.gene84618:CDS
ATTTCCTCAATGTCATTCAG+GGG 0.654185 7.3:-38798022 None:intergenic
TGTGGAACGTATTGTAACAG+AGG 0.655029 7.3:+38797117 MS.gene84618:CDS
AAGGGCTTACCATCTGAAGA+GGG 0.661118 7.3:+38797530 MS.gene84618:CDS
TTTCCTCAATGTCATTCAGG+GGG 0.662963 7.3:-38798021 None:intergenic
GAGGGCTTACCATCTGAAGA+GGG 0.666261 7.3:+38797491 MS.gene84618:CDS
GACATATCCTCCAGAAACAG+GGG 0.675682 7.3:-38797906 None:intergenic
ATTTGCAACACTCCTCCTAG+AGG 0.676162 7.3:-38797662 None:intergenic
GTTAGTCAAAGCAGATGTTG+AGG 0.693625 7.3:-38798188 None:intergenic
TGTTACAATACGTTCCACAA+AGG 0.700027 7.3:-38797113 None:intergenic
GTGCTTACTTCCAAAGACGG+TGG 0.717388 7.3:+38797854 MS.gene84618:CDS
GATACAGTACTTTATCTGTG+AGG 0.719909 7.3:+38797047 MS.gene84618:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCGTTTTTATTATAATTATA+AGG - chr7.3:38798459-38798478 None:intergenic 10.0%
!! ATAAAAATGGTTAAAAAGAT+TGG + chr7.3:38798677-38798696 MS.gene84618:intron 15.0%
!! CTCAAATGTTAAAAAATAAA+TGG - chr7.3:38798707-38798726 None:intergenic 15.0%
!!! AATTTCTATATTTTTATCAC+TGG + chr7.3:38797344-38797363 MS.gene84618:intron 15.0%
!! AGTAAAAACTTATATTTCCA+AGG - chr7.3:38798345-38798364 None:intergenic 20.0%
!! CAAGGAAAAATTTCTATTAA+AGG - chr7.3:38798327-38798346 None:intergenic 20.0%
!! TATGATTATTAAAGCAAATG+TGG + chr7.3:38798903-38798922 MS.gene84618:intron 20.0%
!! TTATATATTTGCGTAATGAA+AGG + chr7.3:38798859-38798878 MS.gene84618:intron 20.0%
!!! AAGCTTAATTTTTCTTCTTT+TGG - chr7.3:38799230-38799249 None:intergenic 20.0%
!!! CTTTAATAGAAATTTTTCCT+TGG + chr7.3:38798325-38798344 MS.gene84618:intron 20.0%
!!! TGATCTTTTTTCTTTAATCA+TGG + chr7.3:38799049-38799068 MS.gene84618:intron 20.0%
! AAACATAGAAAAAGAAGTGA+AGG + chr7.3:38798973-38798992 MS.gene84618:intron 25.0%
! ACATATGTAGGAAAAATTTG+AGG - chr7.3:38797800-38797819 None:intergenic 25.0%
! AGAAAGATTGAAATGTAAGA+AGG + chr7.3:38798997-38799016 MS.gene84618:intron 25.0%
! ATATCTATGTTTATATGTGC+AGG + chr7.3:38797385-38797404 MS.gene84618:intron 25.0%
! ATCTTGATGGGAAATATTTA+TGG + chr7.3:38796935-38796954 MS.gene84618:CDS 25.0%
! GAAAGATTGAAATGTAAGAA+GGG + chr7.3:38798998-38799017 MS.gene84618:intron 25.0%
! TTCATATCTAGAAAGAATGA+AGG + chr7.3:38797997-38798016 MS.gene84618:CDS 25.0%
! TTTAACAAATCCATTGTCAA+AGG - chr7.3:38797160-38797179 None:intergenic 25.0%
!! ATAATTTGTATCTATGGTGA+TGG + chr7.3:38798132-38798151 MS.gene84618:intron 25.0%
!! GATTGCATAATTTGTATCTA+TGG + chr7.3:38798126-38798145 MS.gene84618:intron 25.0%
!! TTCACTTCTTTTTCTATGTT+TGG - chr7.3:38798974-38798993 None:intergenic 25.0%
!! TTTTTCCTACATATGTAGTA+AGG + chr7.3:38797804-38797823 MS.gene84618:CDS 25.0%
!!! ATGACGAGATTTTGATAATT+TGG - chr7.3:38798250-38798269 None:intergenic 25.0%
!!! CAATGGATTTGTTAAAGATA+CGG + chr7.3:38797164-38797183 MS.gene84618:CDS 25.0%
!!! TAACCATTTTTATGAGAAGA+TGG - chr7.3:38798670-38798689 None:intergenic 25.0%
!!! TCTTGTTAACAGTTTTGAAT+TGG + chr7.3:38799081-38799100 MS.gene84618:intron 25.0%
AATGATCTGGTAAAAGGTTT+AGG + chr7.3:38797225-38797244 MS.gene84618:intron 30.0%
AATGTTAATGAGTGCTCTTA+CGG - chr7.3:38798434-38798453 None:intergenic 30.0%
AATTTCCTCAATGTCATTCA+GGG - chr7.3:38798026-38798045 None:intergenic 30.0%
AGAAGATGGTAGTAAATTAG+TGG - chr7.3:38798656-38798675 None:intergenic 30.0%
ATACAGTACTTTATCTGTGA+GGG + chr7.3:38797048-38797067 MS.gene84618:CDS 30.0%
ATTAAGCTTGAAGAAACCTA+TGG + chr7.3:38799241-38799260 MS.gene84618:CDS 30.0%
CTACCATCTTCTCATAAAAA+TGG + chr7.3:38798664-38798683 MS.gene84618:intron 30.0%
GAGGAAATTGTCGTTAATAT+TGG + chr7.3:38798037-38798056 MS.gene84618:CDS 30.0%
GGTAGTAAATTAGTGGTTAA+TGG - chr7.3:38798649-38798668 None:intergenic 30.0%
! AAACCTTTTACCAGATCATT+AGG - chr7.3:38797225-38797244 None:intergenic 30.0%
! ATTTTATGTGTGCATGTACA+TGG + chr7.3:38799126-38799145 MS.gene84618:intron 30.0%
! TGAAGTGTGTGAGTATTTTT+AGG + chr7.3:38797079-38797098 MS.gene84618:CDS 30.0%
! TTTAAGATAAAGTCTGTCAG+AGG - chr7.3:38797449-38797468 None:intergenic 30.0%
!! AGTTTTATCACTTTTCCTCT+AGG + chr7.3:38797647-38797666 MS.gene84618:CDS 30.0%
!! TCACAGATAAAGTACTGTAT+CGG - chr7.3:38797048-38797067 None:intergenic 30.0%
!!! CTGTTTTGATTGGTAATATC+TGG - chr7.3:38797832-38797851 None:intergenic 30.0%
AAATCCATTGTCAAAGGAAC+TGG - chr7.3:38797154-38797173 None:intergenic 35.0%
AACACTACTTATCAGCAAGA+AGG + chr7.3:38797296-38797315 MS.gene84618:intron 35.0%
AAGAAATGCTAATCAAGCCA+AGG + chr7.3:38796971-38796990 MS.gene84618:CDS 35.0%
AATCCATTGTCAAAGGAACT+GGG - chr7.3:38797153-38797172 None:intergenic 35.0%
AATCTCAATGCAGCTTAAAG+AGG - chr7.3:38797702-38797721 None:intergenic 35.0%
AGCAAATGTGGAATGTATAG+AGG + chr7.3:38798915-38798934 MS.gene84618:intron 35.0%
ATGCCTAATGATCTGGTAAA+AGG + chr7.3:38797219-38797238 MS.gene84618:intron 35.0%
ATTCCTTAACCATTTCCCTT+AGG - chr7.3:38798304-38798323 None:intergenic 35.0%
ATTTCCTCAATGTCATTCAG+GGG - chr7.3:38798025-38798044 None:intergenic 35.0%
CAATTTCCTCAATGTCATTC+AGG - chr7.3:38798027-38798046 None:intergenic 35.0%
GATACAGTACTTTATCTGTG+AGG + chr7.3:38797047-38797066 MS.gene84618:CDS 35.0%
GATCACAAATTAGACAGAAC+CGG - chr7.3:38799163-38799182 None:intergenic 35.0%
GGAAGAGAGAAAATCAAGAA+CGG + chr7.3:38799019-38799038 MS.gene84618:intron 35.0%
GTACATGGTATGAAGTATAC+CGG + chr7.3:38799141-38799160 MS.gene84618:intron 35.0%
TAGTTTGGTCTAGTAGCTAA+GGG + chr7.3:38798590-38798609 MS.gene84618:intron 35.0%
TCAACATCTGCTTTGACTAA+CGG + chr7.3:38798190-38798209 MS.gene84618:CDS 35.0%
TGGGAAATATTTATGGTCAC+AGG + chr7.3:38796942-38796961 MS.gene84618:CDS 35.0%
TGGTTCCTTACTACATATGT+AGG - chr7.3:38797812-38797831 None:intergenic 35.0%
TGTCGTTAATATTGGAGTGA+AGG + chr7.3:38798045-38798064 MS.gene84618:CDS 35.0%
TGTTACAATACGTTCCACAA+AGG - chr7.3:38797116-38797135 None:intergenic 35.0%
TTAGGTTTACTGCAGATGAA+CGG + chr7.3:38797243-38797262 MS.gene84618:intron 35.0%
TTCTGTAATGCCTAATGATC+TGG + chr7.3:38797212-38797231 MS.gene84618:CDS 35.0%
! GGTAAGATTGGTATTGGAAA+GGG + chr7.3:38797512-38797531 MS.gene84618:CDS 35.0%
! TATAGCAGAGGAAGATTTTG+CGG + chr7.3:38797610-38797629 MS.gene84618:CDS 35.0%
!! ACTAACCTAAGAAGTGTTTG+AGG - chr7.3:38798216-38798235 None:intergenic 35.0%
!! TTTATCACTTTTCCTCTAGG+AGG + chr7.3:38797650-38797669 MS.gene84618:CDS 35.0%
!!! TTTCTTCTTTTGGCTTCTTC+AGG - chr7.3:38799220-38799239 None:intergenic 35.0%
AAACCGACATATGCAGATGA+GGG + chr7.3:38797473-38797492 MS.gene84618:CDS 40.0%
AAAGCGTGCAAGATCTTGAT+GGG + chr7.3:38796923-38796942 MS.gene84618:CDS 40.0%
AACTAGTGTCCTAAGGGAAA+TGG + chr7.3:38798292-38798311 MS.gene84618:intron 40.0%
ACACCATCAAACGATGACAT+TGG - chr7.3:38797977-38797996 None:intergenic 40.0%
ACTACTTATCAGCAAGAAGG+AGG + chr7.3:38797299-38797318 MS.gene84618:intron 40.0%
ACTCCAATGTCATCGTTTGA+TGG + chr7.3:38797971-38797990 MS.gene84618:CDS 40.0%
ATTGGAGTGAAGGAGGTAAA+GGG + chr7.3:38798055-38798074 MS.gene84618:intron 40.0%
ATTGTCAAAGGAACTGGGAA+AGG - chr7.3:38797148-38797167 None:intergenic 40.0%
CCAAACTACCTACTACTACT+TGG - chr7.3:38798578-38798597 None:intergenic 40.0%
CCAAGTAGTAGTAGGTAGTT+TGG + chr7.3:38798575-38798594 MS.gene84618:intron 40.0%
CGTTAATATTGGAGTGAAGG+AGG + chr7.3:38798048-38798067 MS.gene84618:CDS 40.0%
CTACTGCATGCTTTAACAGA+TGG + chr7.3:38799182-38799201 MS.gene84618:intron 40.0%
CTTGCTAACTAGTGTCCTAA+GGG + chr7.3:38798286-38798305 MS.gene84618:intron 40.0%
GAAGAGGGTAAGATTGGTAT+TGG + chr7.3:38797506-38797525 MS.gene84618:CDS 40.0%
GCAGATGCTGATAAAACTAC+TGG + chr7.3:38797556-38797575 MS.gene84618:CDS 40.0%
GTAGTTTGGTCTAGTAGCTA+AGG + chr7.3:38798589-38798608 MS.gene84618:intron 40.0%
GTTAGTCAAAGCAGATGTTG+AGG - chr7.3:38798191-38798210 None:intergenic 40.0%
TATTGGAGTGAAGGAGGTAA+AGG + chr7.3:38798054-38798073 MS.gene84618:intron 40.0%
TCTGTCACCATAATCGTTGT+TGG - chr7.3:38797938-38797957 None:intergenic 40.0%
TCTTGCTAACTAGTGTCCTA+AGG + chr7.3:38798285-38798304 MS.gene84618:intron 40.0%
TGACATATCCTCCAGAAACA+GGG - chr7.3:38797910-38797929 None:intergenic 40.0%
TGTCCTAAGGGAAATGGTTA+AGG + chr7.3:38798298-38798317 MS.gene84618:intron 40.0%
TGTGGAACGTATTGTAACAG+AGG + chr7.3:38797117-38797136 MS.gene84618:CDS 40.0%
TGTGTCCAGAGAGATGTTTA+CGG + chr7.3:38797744-38797763 MS.gene84618:CDS 40.0%
TTTCCCAGTTCCTTTGACAA+TGG + chr7.3:38797147-38797166 MS.gene84618:CDS 40.0%
TTTCCTCAATGTCATTCAGG+GGG - chr7.3:38798024-38798043 None:intergenic 40.0%
! GGGTAAGATTGGTATTGGAA+AGG + chr7.3:38797511-38797530 MS.gene84618:CDS 40.0%
!! CATTCTGTTTGCTATAGCAG+AGG + chr7.3:38797598-38797617 MS.gene84618:CDS 40.0%
!! GCTTCTTCAGGTTGCTTATT+GGG - chr7.3:38799208-38799227 None:intergenic 40.0%
!!! GTAAGCACAGCTGTTTTGAT+TGG - chr7.3:38797842-38797861 None:intergenic 40.0%
AAAGGGCTTACCATCTGAAG+AGG + chr7.3:38797529-38797548 MS.gene84618:CDS 45.0%
AACGGCCTCAAACACTTCTT+AGG + chr7.3:38798208-38798227 MS.gene84618:CDS 45.0%
AAGCCCTCATCTGCATATGT+CGG - chr7.3:38797479-38797498 None:intergenic 45.0%
AAGGGCTTACCATCTGAAGA+GGG + chr7.3:38797530-38797549 MS.gene84618:CDS 45.0%
AATCAAGCCAAGGAACTCCA+TGG + chr7.3:38796981-38797000 MS.gene84618:CDS 45.0%
AATGAGTGCTCTTACGGCAT+TGG - chr7.3:38798428-38798447 None:intergenic 45.0%
ACTCCATGGAAGGTAGTTGT+TGG + chr7.3:38796995-38797014 MS.gene84618:CDS 45.0%
ACTCCTGTCCAAGTAGTAGT+AGG + chr7.3:38798567-38798586 MS.gene84618:intron 45.0%
AGGAACCAGAAATGCCTTTG+TGG + chr7.3:38797099-38797118 MS.gene84618:CDS 45.0%
AGTACTTTATCTGTGAGGGC+TGG + chr7.3:38797052-38797071 MS.gene84618:CDS 45.0%
ATTTGCAACACTCCTCCTAG+AGG - chr7.3:38797665-38797684 None:intergenic 45.0%
CAAAGCGTGCAAGATCTTGA+TGG + chr7.3:38796922-38796941 MS.gene84618:CDS 45.0%
CACAGGACCAACAACGATTA+TGG + chr7.3:38797928-38797947 MS.gene84618:CDS 45.0%
CCAATCTTACCCTCTTCAGA+TGG - chr7.3:38797503-38797522 None:intergenic 45.0%
CCATCTGAAGAGGGTAAGAT+TGG + chr7.3:38797500-38797519 MS.gene84618:CDS 45.0%
CTACCTACTACTACTTGGAC+AGG - chr7.3:38798573-38798592 None:intergenic 45.0%
CTTCCAACAACTACCTTCCA+TGG - chr7.3:38797001-38797020 None:intergenic 45.0%
GAAACCGACATATGCAGATG+AGG + chr7.3:38797472-38797491 MS.gene84618:CDS 45.0%
GACATATCCTCCAGAAACAG+GGG - chr7.3:38797909-38797928 None:intergenic 45.0%
GATTATGGTGACAGACGACT+TGG + chr7.3:38797943-38797962 MS.gene84618:CDS 45.0%
GCTGTGCTTACTTCCAAAGA+CGG + chr7.3:38797851-38797870 MS.gene84618:CDS 45.0%
GTGACATATCCTCCAGAAAC+AGG - chr7.3:38797911-38797930 None:intergenic 45.0%
TCTGACCGTAAACATCTCTC+TGG - chr7.3:38797752-38797771 None:intergenic 45.0%
! AGAAGGAGGCATGATTTCTC+TGG + chr7.3:38797313-38797332 MS.gene84618:intron 45.0%
! GTTTCTGGAGGATATGTCAC+AGG + chr7.3:38797911-38797930 MS.gene84618:CDS 45.0%
!! ACGTTCCACAAAGGCATTTC+TGG - chr7.3:38797107-38797126 None:intergenic 45.0%
!! GGCTTCTTCAGGTTGCTTAT+TGG - chr7.3:38799209-38799228 None:intergenic 45.0%
!! GTATCTATGGTGATGGTGCA+GGG + chr7.3:38798139-38798158 MS.gene84618:intron 45.0%
!! TGTATCTATGGTGATGGTGC+AGG + chr7.3:38798138-38798157 MS.gene84618:intron 45.0%
AAGCCAAGGAACTCCATGGA+AGG + chr7.3:38796985-38797004 MS.gene84618:CDS 50.0%
ATCTGCTTGCCCTCTTCAGA+TGG - chr7.3:38797542-38797561 None:intergenic 50.0%
CCTCCAGAAACAGGGGATTT+GGG - chr7.3:38797902-38797921 None:intergenic 50.0%
CTACCTTCCATGGAGTTCCT+TGG - chr7.3:38796991-38797010 None:intergenic 50.0%
GAGGGCTTACCATCTGAAGA+GGG + chr7.3:38797491-38797510 MS.gene84618:CDS 50.0%
GATCCCAAATCCCCTGTTTC+TGG + chr7.3:38797896-38797915 MS.gene84618:CDS 50.0%
GTGCTTACTTCCAAAGACGG+TGG + chr7.3:38797854-38797873 MS.gene84618:CDS 50.0%
TACTTCCAAAGACGGTGGCA+AGG + chr7.3:38797859-38797878 MS.gene84618:CDS 50.0%
TCCTCCAGAAACAGGGGATT+TGG - chr7.3:38797903-38797922 None:intergenic 50.0%
TGAGGGCTTACCATCTGAAG+AGG + chr7.3:38797490-38797509 MS.gene84618:CDS 50.0%
!! AGGAGGAGTGTTGCAAATGC+TGG + chr7.3:38797667-38797686 MS.gene84618:CDS 50.0%
!! GGAGTGTTGCAAATGCTGGA+AGG + chr7.3:38797671-38797690 MS.gene84618:CDS 50.0%
CAAGACCTTGCCACCGTCTT+TGG - chr7.3:38797867-38797886 None:intergenic 55.0%
CAGAGGAGTCTTCGAGAGCA+AGG - chr7.3:38797432-38797451 None:intergenic 55.0%
GGTCCCCCTGAATGACATTG+AGG + chr7.3:38798018-38798037 MS.gene84618:CDS 55.0%
!! CCCAAATCCCCTGTTTCTGG+AGG + chr7.3:38797899-38797918 MS.gene84618:CDS 55.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 38796892 38799271 38796892 ID=MS.gene84618
chr7.3 mRNA 38796892 38799271 38796892 ID=MS.gene84618.t1;Parent=MS.gene84618
chr7.3 exon 38796892 38797233 38796892 ID=MS.gene84618.t1.exon1;Parent=MS.gene84618.t1
chr7.3 CDS 38796892 38797233 38796892 ID=cds.MS.gene84618.t1;Parent=MS.gene84618.t1
chr7.3 exon 38797407 38798069 38797407 ID=MS.gene84618.t1.exon2;Parent=MS.gene84618.t1
chr7.3 CDS 38797407 38798069 38797407 ID=cds.MS.gene84618.t1;Parent=MS.gene84618.t1
chr7.3 exon 38798160 38798229 38798160 ID=MS.gene84618.t1.exon3;Parent=MS.gene84618.t1
chr7.3 CDS 38798160 38798229 38798160 ID=cds.MS.gene84618.t1;Parent=MS.gene84618.t1
chr7.3 exon 38799201 38799271 38799201 ID=MS.gene84618.t1.exon4;Parent=MS.gene84618.t1
chr7.3 CDS 38799201 38799271 38799201 ID=cds.MS.gene84618.t1;Parent=MS.gene84618.t1
Gene Sequence

>MS.gene84618

ATGAAATTTGGCAGCATTAGCTCACTTTATCAAAGCGTGCAAGATCTTGATGGGAAATATTTATGGTCACAGGAATGCAAAGAAATGCTAATCAAGCCAAGGAACTCCATGGAAGGTAGTTGTTGGAAGCTCAAACTGAACATCGATGACACACCGATACAGTACTTTATCTGTGAGGGCTGGATTATGAAGTGTGTGAGTATTTTTAGGAACCAGAAATGCCTTTGTGGAACGTATTGTAACAGAGGAGTTACCTTTCCCAGTTCCTTTGACAATGGATTTGTTAAAGATACGGCTAGTTTTATAATTCATGACGATCTTTCTGTAATGCCTAATGATCTGGTAAAAGGTTTAGGTTTACTGCAGATGAACGGAATCAATGAGATTGCAGATATCGAGAGAAAAACACTACTTATCAGCAAGAAGGAGGCATGATTTCTCTGGATTTTCTAAATTTCTATATTTTTATCACTGGTGTTGATTTTTTAAATGAATATCTATGTTTATATGTGCAGGTAGTCGATCTTCTCAAGTTGTCCTTGCTCTCGAAGACTCCTCTGACAGACTTTATCTTAAAGAAGAAACCGACATATGCAGATGAGGGCTTACCATCTGAAGAGGGTAAGATTGGTATTGGAAAGGGCTTACCATCTGAAGAGGGCAAGCAGATGCTGATAAAACTACTGGTTAGAAAATCAACTAGAAACATTCTGTTTGCTATAGCAGAGGAAGATTTTGCGGCTGACTTTCTTTTCAGTTTTATCACTTTTCCTCTAGGAGGAGTGTTGCAAATGCTGGAAGGATTCTCCTCTTTAAGCTGCATTGAGATTTTATATAAAAGCATGACTGAGTTGTGTCCAGAGAGATGTTTACGGTCAGATGAAGTTAAAAACAAACTAAGTAAGCCTCAAATTTTTCCTACATATGTAGTAAGGAACCAGATATTACCAATCAAAACAGCTGTGCTTACTTCCAAAGACGGTGGCAAGGTCTTGAAATTTGTTGATCCCAAATCCCCTGTTTCTGGAGGATATGTCACAGGACCAACAACGATTATGGTGACAGACGACTTGGTTGTGACTCCAATGTCATCGTTTGATGGTGTTTCATATCTAGAAAGAATGAAGGTCCCCCTGAATGACATTGAGGAAATTGTCGTTAATATTGGAGTGAAGGAGGTAAAGGGATTGTCTGAGACATTATTTAGCATAATTTTTAATTTTAACATTTCTCAGATTGCATAATTTGTATCTATGGTGATGGTGCAGGGTCTCAGCATACTAAAAGCTTCATTGACCTCAACATCTGCTTTGACTAACGGCCTCAAACACTTCTTAGGTTAGTTCAATATTCAACCAAATTATCAAAATCTCGTCATACATTATAATCAGCGTCTTGCTAACTAGTGTCCTAAGGGAAATGGTTAAGGAATCCTTTAATAGAAATTTTTCCTTGGAAATATAAGTTTTTACTTTTGTGTTATCAATAATTACATAACTTTTTAATGCAAACTTACTAATTTTAACACTTTAACCAATGCCGTAAGAGCACTCATTAACATTCTCCTTATAATTATAATAAAAACGATATTAAAGTTCATATACATGTGTTTTAATTTATCTTTAGATAATGACGTTGTGCTTTTATTCAAAAGTCGCATGTGAAATAGTACTGTACTCCTGTCCAAGTAGTAGTAGGTAGTTTGGTCTAGTAGCTAAGGGAAACTGAATGAGTTAAGTACAATAAGACTATAACCATTAACCACTAATTTACTACCATCTTCTCATAAAAATGGTTAAAAAGATTGGATTTCCATTTATTTTTTAACATTTGAGAGTAATTTAGTCTCTGATAATTTTTCGTTGATTTTTCTGTAAAATATTCTGAATTACATCAATGATTTCTTTACATTTCTTATCAATATTATTTCTTCTAGCATGATTAGTATCTTACTTGTTTATAGTACTTTATATATTTGCGTAATGAAAGGTAATCATATATGTCATGTACATATGATTATTAAAGCAAATGTGGAATGTATAGAGGACAGTTAATGTTGAGAAAATATAGTGATAAAAACCAAACATAGAAAAAGAAGTGAAGGAAGAAAGATTGAAATGTAAGAAGGGAAGAGAGAAAATCAAGAACGGTGAGAAATGATCTTTTTTCTTTAATCATGGTGACTTTTTTCTTGTTAACAGTTTTGAATTGGTACTCAATACTAAATTTACTCAATTTTATGTGTGCATGTACATGGTATGAAGTATACCGGTTCTGTCTAATTTGTGATCTACTGCATGCTTTAACAGATGGCCCAATAAGCAACCTGAAGAAGCCAAAAGAAGAAAAATTAAGCTTGAAGAAACCTATGGTGTTATGA
Protein sequence

>MS.gene84618.t1

MKFGSISSLYQSVQDLDGKYLWSQECKEMLIKPRNSMEGSCWKLKLNIDDTPIQYFICEGWIMKCVSIFRNQKCLCGTYCNRGVTFPSSFDNGFVKDTASFIIHDDLSVMPNDLVVDLLKLSLLSKTPLTDFILKKKPTYADEGLPSEEGKIGIGKGLPSEEGKQMLIKLLVRKSTRNILFAIAEEDFAADFLFSFITFPLGGVLQMLEGFSSLSCIEILYKSMTELCPERCLRSDEVKNKLSKPQIFPTYVVRNQILPIKTAVLTSKDGGKVLKFVDPKSPVSGGYVTGPTTIMVTDDLVVTPMSSFDGVSYLERMKVPLNDIEEIVVNIGVKEGLSILKASLTSTSALTNGLKHFLDGPISNLKKPKEEKLSLKKPMVL