AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96846

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96846.t1 MTR_7g062280 62.712 413 66 4 1 326 81 492 1.33e-162 462
MS.gene96846.t1 MTR_7g062300 64.359 390 67 3 1 318 83 472 1.41e-158 452
MS.gene96846.t1 MTR_7g063920 50.254 394 90 3 1 326 82 437 1.47e-109 326
MS.gene96846.t1 MTR_7g063880 46.939 392 136 9 1 325 82 468 5.38e-95 290
MS.gene96846.t1 MTR_7g063840 45.592 397 136 8 4 326 84 474 1.18e-94 289
MS.gene96846.t1 MTR_7g063660 44.169 403 144 8 1 326 80 478 3.52e-92 283
MS.gene96846.t1 MTR_7g063830 48.209 363 139 7 7 325 87 444 8.64e-87 268
MS.gene96846.t1 MTR_7g063820 43.137 408 148 7 1 326 80 485 1.00e-85 266
MS.gene96846.t1 MTR_3g007740 44.709 378 144 10 4 320 70 443 1.47e-83 259
MS.gene96846.t1 MTR_7g063900 42.926 417 139 10 1 326 81 489 1.07e-81 256
MS.gene96846.t1 MTR_7g063670 41.842 380 160 7 7 326 80 458 2.08e-78 246
MS.gene96846.t1 MTR_7g063890 42.961 412 143 9 1 325 98 504 5.42e-77 244
MS.gene96846.t1 MTR_7g066570 34.230 409 174 7 1 323 85 484 4.46e-59 199
MS.gene96846.t1 MTR_7g066260 36.631 374 173 9 7 319 92 462 5.26e-59 197
MS.gene96846.t1 MTR_7g063720 51.323 189 66 1 164 326 45 233 3.13e-56 182
MS.gene96846.t1 MTR_7g066430 32.927 410 181 6 3 319 77 485 1.45e-55 188
MS.gene96846.t1 MTR_7g066400 32.812 384 172 10 7 321 73 439 1.10e-53 182
MS.gene96846.t1 MTR_7g066480 33.333 357 168 6 7 320 93 422 1.26e-53 181
MS.gene96846.t1 MTR_3g065200 36.975 357 158 9 3 306 66 408 4.15e-53 181
MS.gene96846.t1 MTR_7g066410 30.876 434 183 9 3 321 83 514 6.72e-52 179
MS.gene96846.t1 MTR_7g058710 30.935 417 194 10 1 326 71 484 2.59e-50 174
MS.gene96846.t1 MTR_1g014060 34.270 356 169 9 1 326 71 391 1.47e-48 167
MS.gene96846.t1 MTR_7g066350 33.245 376 192 8 1 321 80 451 1.76e-48 169
MS.gene96846.t1 MTR_7g062270 73.585 106 27 1 1 106 81 185 5.35e-48 166
MS.gene96846.t1 MTR_7g058700 32.961 358 189 9 8 326 583 928 2.10e-47 171
MS.gene96846.t1 MTR_7g012680 33.586 396 165 11 1 326 85 452 9.19e-47 164
MS.gene96846.t1 MTR_7g066340 33.693 371 182 12 7 319 89 453 1.18e-45 161
MS.gene96846.t1 MTR_7g066360 33.947 380 167 11 1 315 85 445 1.07e-44 159
MS.gene96846.t1 MTR_7g066490 30.878 353 166 8 7 319 93 407 9.42e-44 155
MS.gene96846.t1 MTR_7g063850 37.543 293 110 7 101 325 1 288 1.54e-43 151
MS.gene96846.t1 MTR_7g066290 34.174 357 176 11 7 319 92 433 3.24e-42 151
MS.gene96846.t1 MTR_1g041315 29.863 365 184 8 7 303 91 451 2.84e-40 147
MS.gene96846.t1 MTR_7g066580 28.434 415 172 10 1 322 66 448 5.39e-37 138
MS.gene96846.t1 MTR_7g066310 32.047 337 180 8 1 319 78 383 2.53e-36 135
MS.gene96846.t1 MTR_7g066280 27.919 394 197 8 9 319 1 390 3.25e-35 132
MS.gene96846.t1 MTR_2g029400 28.689 366 147 8 7 309 91 405 2.66e-34 130
MS.gene96846.t1 MTR_4g019310 27.494 411 201 10 7 326 93 497 5.39e-31 122
MS.gene96846.t1 MTR_7g100420 30.599 317 134 6 75 315 87 393 2.02e-28 114
MS.gene96846.t1 MTR_4g019340 27.249 389 182 13 7 307 126 501 2.33e-23 100
MS.gene96846.t1 MTR_7g063760 58.108 74 30 1 254 326 1 74 3.18e-23 91.7
MS.gene96846.t1 MTR_4g017440 26.794 418 183 16 7 319 103 502 8.12e-23 99.0
MS.gene96846.t1 MTR_4g017410 27.586 406 196 15 7 325 96 490 5.34e-22 96.7
MS.gene96846.t1 MTR_7g063690 46.465 99 53 0 62 160 81 179 2.35e-19 85.9
MS.gene96846.t1 MTR_7g066390 38.806 134 67 2 186 319 4 122 3.01e-19 83.6
MS.gene96846.t1 MTR_4g019330 33.735 166 91 4 163 325 39 188 4.17e-15 72.8
MS.gene96846.t1 MTR_8g023240 31.429 140 91 4 31 169 125 260 2.39e-12 68.2
MS.gene96846.t1 MTR_7g063870 44.048 84 39 1 80 155 99 182 2.55e-12 66.2
MS.gene96846.t1 MTR_4g017830 44.304 79 44 0 247 325 429 507 8.94e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96846.t1 AT5G01120 26.087 414 203 11 2 318 81 488 7.66e-24 102
MS.gene96846.t1 AT3G09140 25.176 425 201 12 3 321 82 495 1.11e-22 98.6
MS.gene96846.t1 AT5G01140 24.205 409 209 9 3 326 66 458 3.38e-22 97.1
MS.gene96846.t1 AT5G01150 24.286 420 206 10 3 325 82 486 1.36e-19 89.7
MS.gene96846.t1 AT3G09110 34.810 158 88 5 3 153 82 231 8.74e-17 80.5
MS.gene96846.t1 AT3G09120 35.119 168 83 6 3 154 78 235 1.37e-16 79.3

Find 61 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCCTTTGGGGAGAGGTTTA+AGG 0.181852 7.3:+42833887 None:intergenic
CTCCCCAAAGGATTTGTTAA+TGG 0.249890 7.3:-42833877 MS.gene96846:CDS
GTTGGAATTGTTCGAATATT+TGG 0.258491 7.3:-42833398 MS.gene96846:CDS
GGGAGAGGTTTAAGGAAAAT+TGG 0.267637 7.3:+42833895 None:intergenic
TTTAATCTGTTCACGGAGTT+TGG 0.282622 7.3:-42833790 MS.gene96846:CDS
GTCAATACAGTTTGGCTTGA+TGG 0.284902 7.3:+42833822 None:intergenic
CTTCGGTTGATGTCAAATAT+TGG 0.307101 7.3:+42833312 None:intergenic
GTACAAGAGTATAGTTGATT+TGG 0.317989 7.3:-42833342 MS.gene96846:CDS
TTTAACTGTGAGGCAATATA+AGG 0.334264 7.3:+42833269 None:intergenic
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.3:+42832967 None:intergenic
TACACCATTAACAAATCCTT+TGG 0.341773 7.3:+42833873 None:intergenic
CAAACAGGAGGTTGAAGAAT+TGG 0.359561 7.3:+42833227 None:intergenic
ATTGACTCCAATTTCAGCTT+TGG 0.362521 7.3:-42832974 MS.gene96846:CDS
TTGACTCCAATTTCAGCTTT+GGG 0.364093 7.3:-42832973 MS.gene96846:CDS
CTTGTATAGTCAATACAGTT+TGG 0.367447 7.3:+42833814 None:intergenic
AACTCCTCTTAATGATTTGA+AGG 0.368693 7.3:-42832932 MS.gene96846:CDS
TTATCTAAGGTGATGATTCC+TGG 0.375179 7.3:-42833057 MS.gene96846:intron
TGTGAGCCAAACCATCTGTT+AGG 0.375683 7.3:+42832756 None:intergenic
ACACCATTAACAAATCCTTT+GGG 0.377442 7.3:+42833874 None:intergenic
TACGTTGATGCGATCATATC+CGG 0.377785 7.3:+42833961 None:intergenic
AACAAGCCTGTTCTTAGCTT+CGG 0.381199 7.3:+42833295 None:intergenic
ATCTGCCCTAACAGATGGTT+TGG 0.386880 7.3:-42832762 MS.gene96846:CDS
ACATGCGCTGCCAACTCTAA+TGG 0.404291 7.3:-42833994 MS.gene96846:CDS
AACCATCCCATGAGAGTTCA+AGG 0.404899 7.3:-42833564 MS.gene96846:intron
TGTTCCTTGGGAAGCATCAA+TGG 0.409256 7.3:-42833368 MS.gene96846:CDS
ATTTGGTGGGAATTGTTCCT+TGG 0.418722 7.3:-42833381 MS.gene96846:CDS
TAATCTTCGGCTGAGTTGAT+TGG 0.425110 7.3:+42834069 None:intergenic
TCTGTAGCAAAATACATATC+TGG 0.428362 7.3:+42833015 None:intergenic
CAAATCTGTCAAGGTTGACT+TGG 0.429040 7.3:+42833600 None:intergenic
GCAGTGTCTTAACATATTGA+AGG 0.434262 7.3:-42832801 MS.gene96846:intron
CCATAGTTCGGTAAAAGAAA+TGG 0.436185 7.3:-42833758 MS.gene96846:CDS
CCTGGTGATGGTTATGTAAA+GGG 0.442731 7.3:-42833039 MS.gene96846:CDS
TCTGAATGTCACTAAAGAAA+AGG 0.453648 7.3:-42833734 MS.gene96846:intron
TACAAGCTTTAATCTGTTCA+CGG 0.462133 7.3:-42833797 MS.gene96846:CDS
AAGAGCGCTGCAATAATCTT+CGG 0.463496 7.3:+42834056 None:intergenic
TCACATGCTAACTGAAGTTA+AGG 0.467816 7.3:-42832738 MS.gene96846:CDS
TTTGGTGGGAATTGTTCCTT+GGG 0.483082 7.3:-42833380 MS.gene96846:CDS
AAAGCTGAAATTGGAGTCAA+TGG 0.488614 7.3:+42832976 None:intergenic
CTCTAATGGCTGCTATGCTC+CGG 0.491754 7.3:-42833980 MS.gene96846:CDS
TTAACAAATCCTTTGGGGAG+AGG 0.505941 7.3:+42833880 None:intergenic
AGCATAGCAGCCATTAGAGT+TGG 0.515293 7.3:+42833984 None:intergenic
GGAATTGTTCGAATATTTGG+TGG 0.516582 7.3:-42833395 MS.gene96846:CDS
AGTTGTCACTATTGGCATCA+AGG 0.520473 7.3:-42832905 MS.gene96846:CDS
AACCTTGAACTCTCATGGGA+TGG 0.524761 7.3:+42833562 None:intergenic
CATCAACCGAAGCTAAGAAC+AGG 0.527988 7.3:-42833301 MS.gene96846:CDS
GCGCATGTGAAGTACTTTGT+TGG 0.540167 7.3:+42834009 None:intergenic
GTGAGCCAAACCATCTGTTA+GGG 0.541899 7.3:+42832757 None:intergenic
GAATTGTTCGAATATTTGGT+GGG 0.543684 7.3:-42833394 MS.gene96846:CDS
TTCCTTAAACCTCTCCCCAA+AGG 0.552136 7.3:-42833889 MS.gene96846:CDS
TCCTGGTGATGGTTATGTAA+AGG 0.556342 7.3:-42833040 MS.gene96846:CDS
TGATGAAGGCTGTATGTCTA+CGG 0.561304 7.3:-42834118 None:intergenic
CACCATTAACAAATCCTTTG+GGG 0.573786 7.3:+42833875 None:intergenic
CCCTTTACATAACCATCACC+AGG 0.576971 7.3:+42833039 None:intergenic
TCAACATCTGCCCTAACAGA+TGG 0.593605 7.3:-42832767 MS.gene96846:CDS
CATGCTAACTGAAGTTAAGG+AGG 0.607530 7.3:-42832735 MS.gene96846:CDS
CTTGCTTAACTTTAACTGTG+AGG 0.620501 7.3:+42833259 None:intergenic
CAATCCATTGATGCTTCCCA+AGG 0.636233 7.3:+42833364 None:intergenic
GATAAATATAAATGTCAATG+TGG 0.642959 7.3:-42833934 MS.gene96846:CDS
AAGGTGATGATTCCTGGTGA+TGG 0.651643 7.3:-42833051 MS.gene96846:CDS
TGAAGGCTGTATGTCTACGG+AGG 0.712068 7.3:-42834115 None:intergenic
TGTCACTATTGGCATCAAGG+AGG 0.742676 7.3:-42832902 MS.gene96846:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCAATCAAAAATTTAAGAG+AGG + chr7.3:42833157-42833176 None:intergenic 20.0%
!! GATAAATATAAATGTCAATG+TGG - chr7.3:42832898-42832917 MS.gene96846:intron 20.0%
!! GGATATAAAATTTACAAATC+TGG - chr7.3:42833712-42833731 MS.gene96846:intron 20.0%
!!! AAACTTACTTTTAAGTTTTC+TGG - chr7.3:42833401-42833420 MS.gene96846:CDS 20.0%
!!! AAATTCATTTTCCACAAATT+TGG + chr7.3:42833757-42833776 None:intergenic 20.0%
!!! CATTTTGAAATTTACAAATC+TGG - chr7.3:42833677-42833696 MS.gene96846:intron 20.0%
!!! GTGTGATTTTAAAATTGTTA+AGG - chr7.3:42833299-42833318 MS.gene96846:CDS 20.0%
! GTGGAAAATGAATTTATCTA+AGG - chr7.3:42833762-42833781 MS.gene96846:CDS 25.0%
!! TAACTACTACTGTTTTATAC+AGG - chr7.3:42833179-42833198 MS.gene96846:intron 25.0%
!! TTTTCCTTCAAATCATTAAG+AGG + chr7.3:42833907-42833926 None:intergenic 25.0%
AACAAGTTATTGTATGCTCA+AGG - chr7.3:42833363-42833382 MS.gene96846:CDS 30.0%
AACTCCTCTTAATGATTTGA+AGG - chr7.3:42833900-42833919 MS.gene96846:CDS 30.0%
AAGGAAAAAGTTGTCACTAT+TGG - chr7.3:42833919-42833938 MS.gene96846:CDS 30.0%
ACAAGTTATTGTATGCTCAA+GGG - chr7.3:42833364-42833383 MS.gene96846:CDS 30.0%
ACACCATTAACAAATCCTTT+GGG + chr7.3:42832961-42832980 None:intergenic 30.0%
CAACCATAATAATCACAAAC+AGG + chr7.3:42833623-42833642 None:intergenic 30.0%
CTTGTATAGTCAATACAGTT+TGG + chr7.3:42833021-42833040 None:intergenic 30.0%
GAATTGTTCGAATATTTGGT+GGG - chr7.3:42833438-42833457 MS.gene96846:CDS 30.0%
GTTGGAATTGTTCGAATATT+TGG - chr7.3:42833434-42833453 MS.gene96846:CDS 30.0%
TACACCATTAACAAATCCTT+TGG + chr7.3:42832962-42832981 None:intergenic 30.0%
TCTGAATGTCACTAAAGAAA+AGG - chr7.3:42833098-42833117 MS.gene96846:intron 30.0%
TCTGTAGCAAAATACATATC+TGG + chr7.3:42833820-42833839 None:intergenic 30.0%
TGGCATAAAAAACCATAGTT+CGG - chr7.3:42833062-42833081 MS.gene96846:intron 30.0%
TGGTATATGTACCAAATTTG+TGG - chr7.3:42833743-42833762 MS.gene96846:CDS 30.0%
TTTAACTGTGAGGCAATATA+AGG + chr7.3:42833566-42833585 None:intergenic 30.0%
! CATTAAGAGGAGTTTTCAAA+CGG + chr7.3:42833894-42833913 None:intergenic 30.0%
! GTACAAGAGTATAGTTGATT+TGG - chr7.3:42833490-42833509 MS.gene96846:intron 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7.3:42833825-42833844 MS.gene96846:CDS 30.0%
! TAACTAGCTTCAGAATGATT+TGG + chr7.3:42833329-42833348 None:intergenic 30.0%
! TACAAGCTTTAATCTGTTCA+CGG - chr7.3:42833035-42833054 MS.gene96846:CDS 30.0%
! TTACAAATCTGGAACAGATT+TGG - chr7.3:42833723-42833742 MS.gene96846:intron 30.0%
!! ACCTTGACAGATTTGTTTTT+AGG - chr7.3:42833240-42833259 MS.gene96846:CDS 30.0%
!!! CCTTGACAGATTTGTTTTTA+GGG - chr7.3:42833241-42833260 MS.gene96846:CDS 30.0%
!!! TAAGTTTTCTGGAACAGATT+TGG - chr7.3:42833412-42833431 MS.gene96846:CDS 30.0%
AAAGCTGAAATTGGAGTCAA+TGG + chr7.3:42833859-42833878 None:intergenic 35.0%
AGAAAAACCTTGAACTCTCA+TGG + chr7.3:42833278-42833297 None:intergenic 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.3:42833868-42833887 None:intergenic 35.0%
CACCATTAACAAATCCTTTG+GGG + chr7.3:42832960-42832979 None:intergenic 35.0%
CCATAATAATCACAAACAGG+AGG + chr7.3:42833620-42833639 None:intergenic 35.0%
CCATAGTTCGGTAAAAGAAA+TGG - chr7.3:42833074-42833093 MS.gene96846:intron 35.0%
CCCTAAAAACAAATCTGTCA+AGG + chr7.3:42833244-42833263 None:intergenic 35.0%
CCTCCTGTTTGTGATTATTA+TGG - chr7.3:42833617-42833636 MS.gene96846:CDS 35.0%
CTTGCTTAACTTTAACTGTG+AGG + chr7.3:42833576-42833595 None:intergenic 35.0%
GAAAAACCTTGAACTCTCAT+GGG + chr7.3:42833277-42833296 None:intergenic 35.0%
GCAGTGTCTTAACATATTGA+AGG - chr7.3:42834031-42834050 MS.gene96846:CDS 35.0%
GGAATTGTTCGAATATTTGG+TGG - chr7.3:42833437-42833456 MS.gene96846:CDS 35.0%
TCACATGCTAACTGAAGTTA+AGG - chr7.3:42834094-42834113 MS.gene96846:CDS 35.0%
TTGACTCCAATTTCAGCTTT+GGG - chr7.3:42833859-42833878 MS.gene96846:CDS 35.0%
TTTAATCTGTTCACGGAGTT+TGG - chr7.3:42833042-42833061 MS.gene96846:CDS 35.0%
! ACAAATCTGGAACAGCAATT+TGG - chr7.3:42833690-42833709 MS.gene96846:intron 35.0%
! ATTGACTCCAATTTCAGCTT+TGG - chr7.3:42833858-42833877 MS.gene96846:CDS 35.0%
! CAAATCTGGAACAGCAATTT+GGG - chr7.3:42833691-42833710 MS.gene96846:intron 35.0%
! CCATTTCTTTTACCGAACTA+TGG + chr7.3:42833077-42833096 None:intergenic 35.0%
! CTTCGGTTGATGTCAAATAT+TGG + chr7.3:42833523-42833542 None:intergenic 35.0%
! TTATCTAAGGTGATGATTCC+TGG - chr7.3:42833775-42833794 MS.gene96846:CDS 35.0%
!!! TTTTCTGGAACAGATTTGGT+TGG - chr7.3:42833416-42833435 MS.gene96846:CDS 35.0%
AACAAGCCTGTTCTTAGCTT+CGG + chr7.3:42833540-42833559 None:intergenic 40.0%
AGTTGTCACTATTGGCATCA+AGG - chr7.3:42833927-42833946 MS.gene96846:CDS 40.0%
CAAACAGGAGGTTGAAGAAT+TGG + chr7.3:42833608-42833627 None:intergenic 40.0%
CAAATCTGTCAAGGTTGACT+TGG + chr7.3:42833235-42833254 None:intergenic 40.0%
CATGCTAACTGAAGTTAAGG+AGG - chr7.3:42834097-42834116 MS.gene96846:CDS 40.0%
GGGAGAGGTTTAAGGAAAAT+TGG + chr7.3:42832940-42832959 None:intergenic 40.0%
TACGTTGATGCGATCATATC+CGG + chr7.3:42832874-42832893 None:intergenic 40.0%
TTTGGTGGGAATTGTTCCTT+GGG - chr7.3:42833452-42833471 MS.gene96846:intron 40.0%
! ATTTGGTGGGAATTGTTCCT+TGG - chr7.3:42833451-42833470 MS.gene96846:intron 40.0%
! TTAACAAATCCTTTGGGGAG+AGG + chr7.3:42832955-42832974 None:intergenic 40.0%
!! AAGAGCGCTGCAATAATCTT+CGG + chr7.3:42832779-42832798 None:intergenic 40.0%
!! CCTGGTGATGGTTATGTAAA+GGG - chr7.3:42833793-42833812 MS.gene96846:CDS 40.0%
!! CTCCCCAAAGGATTTGTTAA+TGG - chr7.3:42832955-42832974 MS.gene96846:CDS 40.0%
!! GTCAATACAGTTTGGCTTGA+TGG + chr7.3:42833013-42833032 None:intergenic 40.0%
!! TAATCTTCGGCTGAGTTGAT+TGG + chr7.3:42832766-42832785 None:intergenic 40.0%
!! TCCTGGTGATGGTTATGTAA+AGG - chr7.3:42833792-42833811 MS.gene96846:CDS 40.0%
AACCATCCCATGAGAGTTCA+AGG - chr7.3:42833268-42833287 MS.gene96846:CDS 45.0%
AACCTTGAACTCTCATGGGA+TGG + chr7.3:42833273-42833292 None:intergenic 45.0%
AAGGTGATGATTCCTGGTGA+TGG - chr7.3:42833781-42833800 MS.gene96846:CDS 45.0%
AGCATAGCAGCCATTAGAGT+TGG + chr7.3:42832851-42832870 None:intergenic 45.0%
ATCTGCCCTAACAGATGGTT+TGG - chr7.3:42834070-42834089 MS.gene96846:CDS 45.0%
CAATCCATTGATGCTTCCCA+AGG + chr7.3:42833471-42833490 None:intergenic 45.0%
CATCAACCGAAGCTAAGAAC+AGG - chr7.3:42833531-42833550 MS.gene96846:intron 45.0%
CCCTTTACATAACCATCACC+AGG + chr7.3:42833796-42833815 None:intergenic 45.0%
GTGAGCCAAACCATCTGTTA+GGG + chr7.3:42834078-42834097 None:intergenic 45.0%
TCAACATCTGCCCTAACAGA+TGG - chr7.3:42834065-42834084 MS.gene96846:CDS 45.0%
TGTCACTATTGGCATCAAGG+AGG - chr7.3:42833930-42833949 MS.gene96846:CDS 45.0%
TGTGAGCCAAACCATCTGTT+AGG + chr7.3:42834079-42834098 None:intergenic 45.0%
TTCCTTAAACCTCTCCCCAA+AGG - chr7.3:42832943-42832962 MS.gene96846:CDS 45.0%
! ATCCTTTGGGGAGAGGTTTA+AGG + chr7.3:42832948-42832967 None:intergenic 45.0%
! GCGCATGTGAAGTACTTTGT+TGG + chr7.3:42832826-42832845 None:intergenic 45.0%
!! TGTTCCTTGGGAAGCATCAA+TGG - chr7.3:42833464-42833483 MS.gene96846:intron 45.0%
ACATGCGCTGCCAACTCTAA+TGG - chr7.3:42832838-42832857 MS.gene96846:intron 50.0%
CTCTAATGGCTGCTATGCTC+CGG - chr7.3:42832852-42832871 MS.gene96846:intron 50.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 42832727 42834127 42832727 ID=MS.gene96846
chr7.3 mRNA 42832727 42834127 42832727 ID=MS.gene96846.t1;Parent=MS.gene96846
chr7.3 exon 42833735 42834127 42833735 ID=MS.gene96846.t1.exon1;Parent=MS.gene96846.t1
chr7.3 CDS 42833735 42834127 42833735 ID=cds.MS.gene96846.t1;Parent=MS.gene96846.t1
chr7.3 exon 42833565 42833653 42833565 ID=MS.gene96846.t1.exon2;Parent=MS.gene96846.t1
chr7.3 CDS 42833565 42833653 42833565 ID=cds.MS.gene96846.t1;Parent=MS.gene96846.t1
chr7.3 exon 42833232 42833469 42833232 ID=MS.gene96846.t1.exon3;Parent=MS.gene96846.t1
chr7.3 CDS 42833232 42833469 42833232 ID=cds.MS.gene96846.t1;Parent=MS.gene96846.t1
chr7.3 exon 42832903 42833070 42832903 ID=MS.gene96846.t1.exon4;Parent=MS.gene96846.t1
chr7.3 CDS 42832903 42833070 42832903 ID=cds.MS.gene96846.t1;Parent=MS.gene96846.t1
chr7.3 exon 42832727 42832819 42832727 ID=MS.gene96846.t1.exon5;Parent=MS.gene96846.t1
chr7.3 CDS 42832727 42832819 42832727 ID=cds.MS.gene96846.t1;Parent=MS.gene96846.t1
Gene Sequence

>MS.gene96846

ATGTCTACGGAGGCAATCAAGCAAATGCTTCTACAACCAATCAACTCAGCCGAAGATTATTGCAGCGCTCTTAAATTCAACATCGATGACACTCAACCAACAAAGTACTTCACATGCGCTGCCAACTCTAATGGCTGCTATGCTCCGGATATGATCGCATCAACGTATAAAGATAAATATAAATGTCAATGTGGTCGTTCTTTTACACTTCCAATTTTCCTTAAACCTCTCCCCAAAGGATTTGTTAATGGTGTAACTACTTTTGTCATAACTGATGATCTCACCATCAAGCCAAACTGTATTGACTATACAAGCTTTAATCTGTTCACGGAGTTTGGCATAAAAAACCATAGTTCGGTAAAAGAAATGGTTCTGAATGTCACTAAAGAAAAGGTTTTGTATTTGAATACTGCGTTTGTTTATAACACCTCTCTTAAATTTTTGATTGATTATAACTACTACTGTTTTATACAGGTACTTGATTTGCTAAAGTGTTCTTTGTTTTCCAAGTCAACCTTGACAGATTTGTTTTTAGGGAAGAAACCATCCCATGAGAGTTCAAGGTTTTTCTCGTGTGATTTTAAAATTGTTAAGGATATCCAAATCATTCTGAAGCTAGTTATTAGAAAATCAGATAACAAGTTATTGTATGCTCAAGGGCAGCAAGATTTTGCAAACTTACTTTTAAGTTTTCTGGAACAGATTTGGTTGGAATTGTTCGAATATTTGGTGGGAATTGTTCCTTGGGAAGCATCAATGGATTGTACAAGAGTATAGTTGATTTGGATGAAAACCAATATTTGACATCAACCGAAGCTAAGAACAGGCTTGTTGATCCTTATATTGCCTCACAGTTAAAGTTAAGCAAGAAGATATTACCAATTCTTCAACCTCCTGTTTGTGATTATTATGGTTGTTTTGATAGTTCTGTTAAAACTAATAAAATAATTCATTTTGAAATTTACAAATCTGGAACAGCAATTTGGGATATAAAATTTACAAATCTGGAACAGATTTGGTATATGTACCAAATTTGTGGAAAATGAATTTATCTAAGGTGATGATTCCTGGTGATGGTTATGTAAAGGGTCCAGATATGTATTTTGCTACAGATGATTTGGTTGTAGCACCATTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGTTTGAAAACTCCTCTTAATGATTTGAAGGAAAAAGTTGTCACTATTGGCATCAAGGAGGTAAATGCATAGTAAAATTCTTAATATAGTTTTAATCTTTACATTATTTATAAATTGCTTATGTTTATCTTGTCTTGTTGCAGTGTCTTAACATATTGAAGGCTTCTTTGACATCAACATCTGCCCTAACAGATGGTTTGGCTCACATGCTAACTGAAGTTAAGGAGGAGAAATGA
Protein sequence

>MS.gene96846.t1

MSTEAIKQMLLQPINSAEDYCSALKFNIDDTQPTKYFTCAANSNGCYAPDMIASTYKDKYKCQCGRSFTLPIFLKPLPKGFVNGVTTFVITDDLTIKPNCIDYTSFNLFTEFGIKNHSSVKEMVLNVTKEKVLDLLKCSLFSKSTLTDLFLGKKPSHESSRAARFCKLTFKFSGTDLVGIVRIFGGNCSLGSINGLYKSIVDLDENQYLTSTEAKNRLVDPYIASQLKLSKKILPILQPPVMIPGDGYVKGPDMYFATDDLVVAPLTPISALGLLNRLKTPLNDLKEKVVTIGIKECLNILKASLTSTSALTDGLAHMLTEVKEEK