AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene96852

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96852.t1 MTR_7g062280 80.285 492 82 3 5 483 3 492 0.0 790
MS.gene96852.t1 MTR_7g062300 80.126 478 86 5 1 475 1 472 0.0 751
MS.gene96852.t1 MTR_7g063920 68.116 483 108 5 1 483 1 437 0.0 620
MS.gene96852.t1 MTR_7g063880 55.852 487 191 9 1 482 1 468 3.64e-166 478
MS.gene96852.t1 MTR_7g063660 55.115 479 202 7 11 483 7 478 4.12e-165 475
MS.gene96852.t1 MTR_7g063840 53.766 478 211 7 8 483 5 474 4.98e-162 467
MS.gene96852.t1 MTR_7g063900 54.326 497 205 9 1 483 1 489 6.24e-162 468
MS.gene96852.t1 MTR_7g063900 27.126 247 155 7 14 244 253 490 2.67e-11 66.2
MS.gene96852.t1 MTR_7g063820 52.881 486 218 6 6 483 3 485 2.07e-153 446
MS.gene96852.t1 MTR_7g063830 51.753 485 190 10 1 482 1 444 1.51e-150 437
MS.gene96852.t1 MTR_7g063890 55.328 488 194 12 11 482 25 504 7.94e-146 427
MS.gene96852.t1 MTR_3g007740 51.875 480 180 12 8 477 5 443 2.40e-141 413
MS.gene96852.t1 MTR_7g063670 48.971 486 197 9 10 483 12 458 1.41e-137 404
MS.gene96852.t1 MTR_7g063670 26.667 225 135 7 9 230 248 445 5.73e-13 71.2
MS.gene96852.t1 MTR_7g066570 40.316 506 251 12 3 480 2 484 3.41e-109 335
MS.gene96852.t1 MTR_7g066260 42.828 495 233 15 1 477 1 463 2.26e-106 325
MS.gene96852.t1 MTR_3g065200 43.231 458 201 11 13 463 3 408 2.47e-106 324
MS.gene96852.t1 MTR_7g066430 41.107 506 249 12 14 482 5 498 1.34e-102 316
MS.gene96852.t1 MTR_7g066410 37.549 514 272 7 9 478 6 514 1.28e-99 309
MS.gene96852.t1 MTR_7g066410 27.083 240 148 9 7 230 278 506 7.04e-13 71.2
MS.gene96852.t1 MTR_7g066410 28.497 193 107 7 251 424 5 185 1.92e-11 66.6
MS.gene96852.t1 MTR_7g058710 37.673 507 269 15 1 483 1 484 6.57e-96 298
MS.gene96852.t1 MTR_7g066360 42.505 487 220 12 3 472 2 445 1.04e-94 295
MS.gene96852.t1 MTR_7g066580 38.980 490 228 12 19 479 1 448 9.61e-92 286
MS.gene96852.t1 MTR_7g066580 27.004 237 150 8 10 231 212 440 5.03e-11 65.1
MS.gene96852.t1 MTR_7g066290 38.945 493 226 11 1 477 1 434 1.65e-90 283
MS.gene96852.t1 MTR_7g012680 38.845 502 235 15 3 483 2 452 2.22e-90 283
MS.gene96852.t1 MTR_7g066340 36.831 486 263 8 3 477 2 454 1.01e-89 282
MS.gene96852.t1 MTR_7g066350 38.272 486 248 11 9 478 2 451 1.12e-88 279
MS.gene96852.t1 MTR_7g062270 66.120 183 62 0 6 188 3 185 8.69e-83 261
MS.gene96852.t1 MTR_7g066400 34.476 496 247 12 3 478 2 439 7.92e-81 258
MS.gene96852.t1 MTR_1g041315 34.917 484 255 9 3 460 2 451 1.99e-80 258
MS.gene96852.t1 MTR_7g063720 54.618 249 95 4 236 483 2 233 3.19e-79 247
MS.gene96852.t1 MTR_7g063720 29.956 227 131 8 8 230 18 220 3.83e-18 84.0
MS.gene96852.t1 MTR_7g066480 44.343 327 162 5 12 326 15 333 3.40e-78 251
MS.gene96852.t1 MTR_7g066480 38.760 129 68 3 354 477 300 422 9.13e-15 76.6
MS.gene96852.t1 MTR_4g019310 34.661 502 291 13 10 483 5 497 3.32e-75 245
MS.gene96852.t1 MTR_7g058700 33.680 481 214 11 25 483 531 928 3.88e-72 246
MS.gene96852.t1 MTR_7g066310 32.692 468 222 8 13 477 7 384 9.98e-70 228
MS.gene96852.t1 MTR_7g066490 41.745 321 163 6 13 326 16 319 3.36e-68 224
MS.gene96852.t1 MTR_7g066490 39.535 129 67 3 354 477 286 408 1.04e-14 76.3
MS.gene96852.t1 MTR_7g063850 45.806 310 136 11 183 482 1 288 2.02e-65 213
MS.gene96852.t1 MTR_2g029400 32.573 482 232 11 1 466 1 405 1.24e-62 209
MS.gene96852.t1 MTR_4g017830 29.559 521 311 13 3 482 2 507 3.87e-55 192
MS.gene96852.t1 MTR_4g017410 29.637 523 288 15 6 482 2 490 9.01e-54 188
MS.gene96852.t1 MTR_4g017610 31.311 511 276 15 1 472 1 475 9.36e-53 185
MS.gene96852.t1 MTR_4g017440 30.326 521 286 17 7 476 8 502 6.08e-52 184
MS.gene96852.t1 MTR_4g019340 30.612 490 280 15 11 464 36 501 5.53e-50 178
MS.gene96852.t1 MTR_4g019340 28.692 237 130 9 2 225 292 502 3.78e-11 65.5
MS.gene96852.t1 MTR_4g017470 29.207 517 287 14 3 482 2 476 1.55e-49 177
MS.gene96852.t1 MTR_7g066280 31.051 409 241 11 92 477 1 391 4.06e-48 171
MS.gene96852.t1 MTR_7g100420 39.610 308 169 5 169 472 99 393 3.17e-47 168
MS.gene96852.t1 MTR_7g100420 71.739 46 13 0 11 56 37 82 2.00e-12 69.3
MS.gene96852.t1 MTR_1g014060 46.040 202 101 6 22 219 9 206 1.95e-45 163
MS.gene96852.t1 MTR_1g014060 40.500 200 99 5 286 483 210 391 3.36e-33 130
MS.gene96852.t1 MTR_7g066680 33.651 315 137 7 213 472 37 334 2.20e-40 148
MS.gene96852.t1 MTR_7g066680 26.425 193 104 5 7 180 80 253 7.10e-14 73.2
MS.gene96852.t1 MTR_8g023240 29.080 337 211 7 14 341 38 355 4.88e-36 140
MS.gene96852.t1 MTR_4g017550 29.724 471 268 17 43 472 21 469 1.07e-35 138
MS.gene96852.t1 MTR_4g017550 29.185 233 144 7 9 229 243 466 2.53e-12 69.3
MS.gene96852.t1 MTR_7g063690 43.448 145 80 1 141 283 78 222 2.90e-31 121
MS.gene96852.t1 MTR_7g063690 50.549 91 29 2 8 82 7 97 9.13e-17 80.1
MS.gene96852.t1 MTR_1g115440 30.120 249 143 7 5 235 3 238 2.96e-22 95.9
MS.gene96852.t1 MTR_8g445860 28.629 248 155 7 1 236 1 238 1.17e-21 94.4
MS.gene96852.t1 MTR_0150s0010 28.458 253 147 8 1 235 1 237 1.30e-20 91.3
MS.gene96852.t1 MTR_7g063760 52.703 74 34 1 411 483 1 74 2.91e-20 85.1
MS.gene96852.t1 MTR_7g066390 56.757 74 32 0 404 477 50 123 6.98e-19 84.0
MS.gene96852.t1 MTR_1g115455 27.309 249 152 7 1 236 1 233 1.09e-16 79.7
MS.gene96852.t1 MTR_2g067310 36.000 175 70 6 24 196 56 190 7.82e-16 77.4
MS.gene96852.t1 MTR_7g063870 57.627 59 25 0 162 220 99 157 3.44e-13 70.1
MS.gene96852.t1 MTR_7g063870 56.140 57 24 1 6 62 25 80 2.25e-12 67.4
MS.gene96852.t1 MTR_1g115450 35.433 127 67 4 3 124 2 118 7.23e-12 63.5
MS.gene96852.t1 MTR_4g019240 34.711 121 69 3 1 113 1 119 1.54e-11 63.5
MS.gene96852.t1 MTR_1g115470 36.134 119 68 3 9 125 2 114 4.58e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene96852.t1 AT3G09140 31.915 517 291 16 1 478 1 495 1.83e-61 209
MS.gene96852.t1 AT3G09140 25.514 243 150 9 12 241 277 501 1.10e-11 67.4
MS.gene96852.t1 AT5G01120 32.150 507 287 15 6 475 2 488 3.64e-61 208
MS.gene96852.t1 AT5G01150 30.723 498 296 9 9 478 5 481 9.44e-61 207
MS.gene96852.t1 AT3G09140 30.275 545 291 17 1 478 1 523 2.35e-56 196
MS.gene96852.t1 AT3G09140 25.514 243 150 9 12 241 305 529 1.39e-11 67.0
MS.gene96852.t1 AT5G01130 30.303 495 277 12 9 483 5 451 8.41e-53 184
MS.gene96852.t1 AT3G09120 36.533 323 173 8 9 310 2 313 6.34e-52 178
MS.gene96852.t1 AT5G01140 28.425 489 301 10 9 483 5 458 2.52e-51 181
MS.gene96852.t1 AT3G09110 33.136 338 209 7 10 339 6 334 1.12e-50 176
MS.gene96852.t1 AT5G43240 29.960 504 284 16 14 472 10 489 3.19e-49 176
MS.gene96852.t1 AT5G43240 29.960 504 284 16 14 472 10 489 3.19e-49 176
MS.gene96852.t1 AT5G43240 29.960 504 284 16 14 472 10 489 3.19e-49 176
MS.gene96852.t1 AT5G37320 28.119 505 290 18 14 478 10 481 2.45e-35 137
MS.gene96852.t1 AT5G43240 26.970 330 201 11 168 472 31 345 5.70e-16 79.7

Find 87 sgRNAs with CRISPR-Local

Find 115 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTGGAATCACGCGGATATT+TGG 0.230152 7.3:-42921805 MS.gene96852:CDS
CTTGACTCCAATTTCAGCTT+TGG 0.260143 7.3:-42921413 MS.gene96852:CDS
TCCTGTTGAGGGTTATGTTA+AGG 0.326014 7.3:-42921479 MS.gene96852:CDS
TTCACATGTTCCTACTTTAG+TGG 0.327711 7.3:-42922410 MS.gene96852:CDS
AGTAAACCCAAAGCTGAAAT+TGG 0.334732 7.3:+42921406 None:intergenic
TTTAGTCTGTTCCAGGAGTT+TGG 0.334756 7.3:-42922206 MS.gene96852:CDS
GGGAGACGTATAAGGAAAAT+TGG 0.336288 7.3:+42922311 None:intergenic
TTGACTCCAATTTCAGCTTT+GGG 0.338051 7.3:-42921412 MS.gene96852:CDS
ATCCTTGAGGGAGACGTATA+AGG 0.342078 7.3:+42922303 None:intergenic
CCTGTTGAGGGTTATGTTAA+GGG 0.347403 7.3:-42921478 MS.gene96852:CDS
TACAAGCTTTAGTCTGTTCC+AGG 0.364150 7.3:-42922213 MS.gene96852:CDS
TTCGTTCAAAAGAAGTTTCA+AGG 0.367404 7.3:+42922724 None:intergenic
AACCATCCCTTGAGAGTTCA+AGG 0.367767 7.3:-42921972 MS.gene96852:CDS
TGAACACCAGGTTCAAGAAT+TGG 0.375903 7.3:+42921634 None:intergenic
TTTAGGAACCATTGCGAGAT+TGG 0.390984 7.3:-42922627 MS.gene96852:CDS
TACTCCTCTTAATGACTTGA+AGG 0.393876 7.3:-42921371 MS.gene96852:CDS
ATCTGCCCTTACAAATGGTT+TGG 0.401224 7.3:-42921153 MS.gene96852:CDS
AGCTTCTTAACAATGCCTTT+AGG 0.411653 7.3:-42922644 MS.gene96852:CDS
CTCCCTCAAGGATTTGTTAA+CGG 0.417164 7.3:-42922293 MS.gene96852:CDS
CTTGTATAGTCAATACAGTT+TGG 0.420464 7.3:+42922230 None:intergenic
GCAGTGTCTTAGCATATTGA+AGG 0.430801 7.3:-42921192 MS.gene96852:intron
ATTTGGAGAGAATTGTTCCT+TGG 0.437205 7.3:-42921788 MS.gene96852:CDS
TAATCTTCCGCTGAGTTGAT+TGG 0.438608 7.3:+42922482 None:intergenic
CAAATCGGTCAAGGTTGACT+TGG 0.446749 7.3:+42922008 None:intergenic
AAAGTCTTGTTTGCAGAAGC+AGG 0.447416 7.3:-42922692 MS.gene96852:CDS
TGTGAGCCAAACCATTTGTA+AGG 0.452597 7.3:+42921147 None:intergenic
TCAACATCTGCCCTTACAAA+TGG 0.453072 7.3:-42921158 MS.gene96852:CDS
TCTGAATATCACTAAAGAAA+AGG 0.456087 7.3:-42922150 MS.gene96852:intron
TCACATGTTAGCCGAAGTTA+AGG 0.459239 7.3:-42921129 MS.gene96852:CDS
CCCTTAACATAACCCTCAAC+AGG 0.463241 7.3:+42921478 None:intergenic
TGATTGCTTAACTTTAACTG+TGG 0.471996 7.3:+42921664 None:intergenic
CTTGTTTGCAGAAGCAGGTA+AGG 0.477534 7.3:-42922687 MS.gene96852:CDS
GTATGATGGTGAAATTGTTA+AGG 0.481094 7.3:-42921941 MS.gene96852:CDS
TTTGGAGAGAATTGTTCCTT+GGG 0.484437 7.3:-42921787 MS.gene96852:CDS
TAAATATTTGATATCAAAAG+AGG 0.486512 7.3:-42921719 MS.gene96852:CDS
GGTGTAGATAAGAGTTATGC+TGG 0.489254 7.3:-42921538 MS.gene96852:CDS
TTTCTTACATTTCCTTTGGG+TGG 0.496782 7.3:-42921823 MS.gene96852:CDS
GATTGCTTAACTTTAACTGT+GGG 0.508677 7.3:+42921665 None:intergenic
TAATGTGGTGACTCCTGTTG+AGG 0.514930 7.3:-42921491 MS.gene96852:CDS
TACCGTTAACAAATCCTTGA+GGG 0.519784 7.3:+42922291 None:intergenic
TCATTTCTCGTCCTTAACTT+CGG 0.520858 7.3:+42921118 None:intergenic
TATCAAAGTCATTCTGAAGC+TGG 0.521534 7.3:-42921917 MS.gene96852:CDS
AACAAGGTATTGTATGCTCA+AGG 0.521643 7.3:-42921877 MS.gene96852:CDS
CATTAAGAGGAGTATTCAAT+CGG 0.524642 7.3:+42921380 None:intergenic
AACCTTGAACTCTCAAGGGA+TGG 0.527200 7.3:+42921970 None:intergenic
TATCAAAAGAGGCTAAGAAC+AGG 0.528682 7.3:-42921708 MS.gene96852:CDS
CCCTAGTTCCGTAAAAGAAG+TGG 0.532456 7.3:-42922174 MS.gene96852:CDS
CAAGGTATTGTATGCTCAAG+GGG 0.532821 7.3:-42921875 MS.gene96852:CDS
TCTGTAGCAAAATACATAGC+TGG 0.536774 7.3:+42921454 None:intergenic
CAAAGCTGAAATTGGAGTCA+AGG 0.541710 7.3:+42921414 None:intergenic
AATGTGGTGACTCCTGTTGA+GGG 0.545562 7.3:-42921490 MS.gene96852:CDS
AGAAGCAGGTAAGGACTTTG+TGG 0.551445 7.3:-42922678 MS.gene96852:CDS
ATATTACCAATTCTTGAACC+TGG 0.551456 7.3:-42921640 MS.gene96852:CDS
TTCCTTATACGTCTCCCTCA+AGG 0.553358 7.3:-42922305 MS.gene96852:CDS
TTTAACTGTGGGGCAATGCA+AGG 0.554812 7.3:+42921676 None:intergenic
ATAGGAGCAACCACTAAAGT+AGG 0.557683 7.3:+42922400 None:intergenic
CCATGATATTCATGAACACC+AGG 0.566428 7.3:+42921622 None:intergenic
AAAGCTGAAATTGGAGTCAA+GGG 0.571174 7.3:+42921415 None:intergenic
GAAACTGAATTCATCTAATG+TGG 0.572074 7.3:-42921506 MS.gene96852:CDS
CAGTAATAATGATATTGTTG+TGG 0.576938 7.3:-42921578 MS.gene96852:CDS
CATTGCGAGATTGGTAGAGA+AGG 0.577515 7.3:-42922618 MS.gene96852:CDS
CCTGGTGTTCATGAATATCA+TGG 0.582427 7.3:-42921622 MS.gene96852:CDS
AATCTCGCAATGGTTCCTAA+AGG 0.583079 7.3:+42922629 None:intergenic
TAGAGAAGGAATCTAGCATA+GGG 0.584603 7.3:-42922604 MS.gene96852:CDS
AGCATAGGGCAAGTTACAGT+CGG 0.590026 7.3:-42922590 MS.gene96852:CDS
TGTTCCTTGGGAAGCATCAG+CGG 0.592174 7.3:-42921775 MS.gene96852:CDS
ACAAGGTATTGTATGCTCAA+GGG 0.592568 7.3:-42921876 MS.gene96852:CDS
GTAGAGAAGGAATCTAGCAT+AGG 0.592587 7.3:-42922605 MS.gene96852:CDS
TGAAGGTTGTTTCTCTACTG+AGG 0.594448 7.3:-42922528 MS.gene96852:CDS
CTTCTCTACCAATCTCGCAA+TGG 0.597488 7.3:+42922619 None:intergenic
TGAAGTGATCATATCACGAT+AGG 0.597673 7.3:+42922382 None:intergenic
GCATAACTCTTATCTACACC+AGG 0.610698 7.3:+42921541 None:intergenic
GTGAGCCAAACCATTTGTAA+GGG 0.630354 7.3:+42921148 None:intergenic
TATAAGAAAATCAGATAACA+AGG 0.631180 7.3:-42921893 MS.gene96852:CDS
TTCCTTTGGGTGGAATCACG+CGG 0.637590 7.3:-42921813 MS.gene96852:CDS
CAATCCGCTGATGCTTCCCA+AGG 0.641039 7.3:+42921771 None:intergenic
TACTACTTCTACTCAAGCAG+AGG 0.643833 7.3:-42922759 MS.gene96852:CDS
ATCCGCGTGATTCCACCCAA+AGG 0.648170 7.3:+42921811 None:intergenic
GATAAACATAAATGCCAATG+TGG 0.649701 7.3:-42922350 MS.gene96852:CDS
ATACCGTTAACAAATCCTTG+AGG 0.650048 7.3:+42922290 None:intergenic
TATCACAATCGGCATCAAAG+AGG 0.653096 7.3:-42921341 MS.gene96852:intron
AAACTCACTCTATAGAAGTG+TGG 0.661607 7.3:-42922561 MS.gene96852:CDS
AGTGTGGCAGATCTTGATGA+AGG 0.672765 7.3:-42922545 MS.gene96852:CDS
ATTGCTTAACTTTAACTGTG+GGG 0.673850 7.3:+42921666 None:intergenic
GTGTAAAAGAACGACCACAT+TGG 0.678156 7.3:+42922336 None:intergenic
GAACATGTGAAGTACTCTGT+TGG 0.700213 7.3:+42922422 None:intergenic
GCTGCAACCAATCAACTCAG+CGG 0.749919 7.3:-42922489 MS.gene96852:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAATAAAAAAATTAAGAG+AGG + chr7.3:42921806-42921825 None:intergenic 10.0%
!!! ATCTAATATAAATTTTACTA+TGG + chr7.3:42922574-42922593 None:intergenic 10.0%
!! TAAATATTTGATATCAAAAG+AGG - chr7.3:42922166-42922185 MS.gene96852:CDS 15.0%
!! TATAAGAAAATCAGATAACA+AGG - chr7.3:42921992-42922011 MS.gene96852:CDS 20.0%
! AAGGAAAAAGTTATCACAAT+CGG - chr7.3:42922533-42922552 MS.gene96852:CDS 25.0%
! CAGTAATAATGATATTGTTG+TGG - chr7.3:42922307-42922326 MS.gene96852:CDS 25.0%
! TATTTAAATGTTCTACGTGT+GGG - chr7.3:42922610-42922629 MS.gene96852:CDS 25.0%
! TCTGAATATCACTAAAGAAA+AGG - chr7.3:42921735-42921754 MS.gene96852:CDS 25.0%
! TTATTTAAATGTTCTACGTG+TGG - chr7.3:42922609-42922628 MS.gene96852:CDS 25.0%
! TTTCTTCCCTAAAAACAAAT+CGG + chr7.3:42921895-42921914 None:intergenic 25.0%
!! AAACTTCTTTTGAACGAAAA+AGG - chr7.3:42921166-42921185 MS.gene96852:CDS 25.0%
!! AAGTTTTCTTACATTTCCTT+TGG - chr7.3:42922058-42922077 MS.gene96852:intron 25.0%
!! AGTTTTCTTACATTTCCTTT+GGG - chr7.3:42922059-42922078 MS.gene96852:intron 25.0%
!!! GAATATCATGGTTATTTTGA+AGG - chr7.3:42922275-42922294 MS.gene96852:CDS 25.0%
ATATTACCAATTCTTGAACC+TGG - chr7.3:42922245-42922264 MS.gene96852:CDS 30.0%
ATTGCTTAACTTTAACTGTG+GGG + chr7.3:42922222-42922241 None:intergenic 30.0%
ATTTAAATGTTCTACGTGTG+GGG - chr7.3:42922611-42922630 MS.gene96852:CDS 30.0%
CTTGTATAGTCAATACAGTT+TGG + chr7.3:42921658-42921677 None:intergenic 30.0%
GAAACTGAATTCATCTAATG+TGG - chr7.3:42922379-42922398 MS.gene96852:CDS 30.0%
GATAAACATAAATGCCAATG+TGG - chr7.3:42921535-42921554 MS.gene96852:CDS 30.0%
GATTGCTTAACTTTAACTGT+GGG + chr7.3:42922223-42922242 None:intergenic 30.0%
TGATTGCTTAACTTTAACTG+TGG + chr7.3:42922224-42922243 None:intergenic 30.0%
TTCGTTCAAAAGAAGTTTCA+AGG + chr7.3:42921164-42921183 None:intergenic 30.0%
! ATTCAGAACCACTTCTTTTA+CGG + chr7.3:42921722-42921741 None:intergenic 30.0%
! GTATGATGGTGAAATTGTTA+AGG - chr7.3:42921944-42921963 MS.gene96852:CDS 30.0%
! GTATTTTGCTACAGATGATT+TGG - chr7.3:42922439-42922458 MS.gene96852:CDS 30.0%
! TTTTCCTTCAAGTCATTAAG+AGG + chr7.3:42922521-42922540 None:intergenic 30.0%
!! CATTAAGAGGAGTATTCAAT+CGG + chr7.3:42922508-42922527 None:intergenic 30.0%
AAACTCACTCTATAGAAGTG+TGG - chr7.3:42921324-42921343 MS.gene96852:intron 35.0%
AAAGCTGAAATTGGAGTCAA+GGG + chr7.3:42922473-42922492 None:intergenic 35.0%
AGAAAAACCTTGAACTCTCA+AGG + chr7.3:42921923-42921942 None:intergenic 35.0%
AGCTTCTTAACAATGCCTTT+AGG - chr7.3:42921241-42921260 MS.gene96852:intron 35.0%
AGTAAACCCAAAGCTGAAAT+TGG + chr7.3:42922482-42922501 None:intergenic 35.0%
ATACCGTTAACAAATCCTTG+AGG + chr7.3:42921598-42921617 None:intergenic 35.0%
ATTTGGAGAGAATTGTTCCT+TGG - chr7.3:42922097-42922116 MS.gene96852:intron 35.0%
GAAAAACCTTGAACTCTCAA+GGG + chr7.3:42921922-42921941 None:intergenic 35.0%
TACCGTTAACAAATCCTTGA+GGG + chr7.3:42921597-42921616 None:intergenic 35.0%
TACTCCTCTTAATGACTTGA+AGG - chr7.3:42922514-42922533 MS.gene96852:CDS 35.0%
TAGAGAAGGAATCTAGCATA+GGG - chr7.3:42921281-42921300 MS.gene96852:intron 35.0%
TATCAAAAGAGGCTAAGAAC+AGG - chr7.3:42922177-42922196 MS.gene96852:CDS 35.0%
TCAAACTAGTCCATCGAAAT+TGG + chr7.3:42922641-42922660 None:intergenic 35.0%
TCATTTCTCGTCCTTAACTT+CGG + chr7.3:42922770-42922789 None:intergenic 35.0%
TCTGTAGCAAAATACATAGC+TGG + chr7.3:42922434-42922453 None:intergenic 35.0%
TGAAGTGATCATATCACGAT+AGG + chr7.3:42921506-42921525 None:intergenic 35.0%
TTCACATGTTCCTACTTTAG+TGG - chr7.3:42921475-42921494 MS.gene96852:CDS 35.0%
TTGACTCCAATTTCAGCTTT+GGG - chr7.3:42922473-42922492 MS.gene96852:CDS 35.0%
TTTCTTACATTTCCTTTGGG+TGG - chr7.3:42922062-42922081 MS.gene96852:intron 35.0%
TTTGGAGAGAATTGTTCCTT+GGG - chr7.3:42922098-42922117 MS.gene96852:intron 35.0%
! GTGGTTCAAATTTTCAAACC+TGG - chr7.3:42922326-42922345 MS.gene96852:CDS 35.0%
! TCAAGGTTTTTCTCGTATGA+TGG - chr7.3:42921930-42921949 MS.gene96852:CDS 35.0%
!! AACAAGGTATTGTATGCTCA+AGG - chr7.3:42922008-42922027 MS.gene96852:CDS 35.0%
!! ACAAGGTATTGTATGCTCAA+GGG - chr7.3:42922009-42922028 MS.gene96852:CDS 35.0%
!! TATCAAAGTCATTCTGAAGC+TGG - chr7.3:42921968-42921987 MS.gene96852:CDS 35.0%
!!! ACCTTGACCGATTTGTTTTT+AGG - chr7.3:42921885-42921904 MS.gene96852:CDS 35.0%
!!! CATGGTTATTTTGAAGGCAT+TGG - chr7.3:42922281-42922300 MS.gene96852:CDS 35.0%
!!! CCTTGACCGATTTGTTTTTA+GGG - chr7.3:42921886-42921905 MS.gene96852:CDS 35.0%
AATCTCGCAATGGTTCCTAA+AGG + chr7.3:42921259-42921278 None:intergenic 40.0%
ATAGGAGCAACCACTAAAGT+AGG + chr7.3:42921488-42921507 None:intergenic 40.0%
ATCTGCCCTTACAAATGGTT+TGG - chr7.3:42922732-42922751 MS.gene96852:CDS 40.0%
CAAAGCTGAAATTGGAGTCA+AGG + chr7.3:42922474-42922493 None:intergenic 40.0%
CCATGATATTCATGAACACC+AGG + chr7.3:42922266-42922285 None:intergenic 40.0%
CCCTAAAAACAAATCGGTCA+AGG + chr7.3:42921889-42921908 None:intergenic 40.0%
CCTGGTGTTCATGAATATCA+TGG - chr7.3:42922263-42922282 MS.gene96852:CDS 40.0%
CCTGTTGAGGGTTATGTTAA+GGG - chr7.3:42922407-42922426 MS.gene96852:CDS 40.0%
CTTGACTCCAATTTCAGCTT+TGG - chr7.3:42922472-42922491 MS.gene96852:CDS 40.0%
GCAGTGTCTTAGCATATTGA+AGG - chr7.3:42922693-42922712 MS.gene96852:CDS 40.0%
GCATAACTCTTATCTACACC+AGG + chr7.3:42922347-42922366 None:intergenic 40.0%
GGGAGACGTATAAGGAAAAT+TGG + chr7.3:42921577-42921596 None:intergenic 40.0%
GGTGTAGATAAGAGTTATGC+TGG - chr7.3:42922347-42922366 MS.gene96852:CDS 40.0%
GTAGAGAAGGAATCTAGCAT+AGG - chr7.3:42921280-42921299 MS.gene96852:intron 40.0%
GTGAGCCAAACCATTTGTAA+GGG + chr7.3:42922740-42922759 None:intergenic 40.0%
GTGTAAAAGAACGACCACAT+TGG + chr7.3:42921552-42921571 None:intergenic 40.0%
TACTACTTCTACTCAAGCAG+AGG - chr7.3:42921126-42921145 MS.gene96852:CDS 40.0%
TATCACAATCGGCATCAAAG+AGG - chr7.3:42922544-42922563 MS.gene96852:CDS 40.0%
TCAACATCTGCCCTTACAAA+TGG - chr7.3:42922727-42922746 MS.gene96852:CDS 40.0%
TCACATGTTAGCCGAAGTTA+AGG - chr7.3:42922756-42922775 MS.gene96852:CDS 40.0%
TCCTGTTGAGGGTTATGTTA+AGG - chr7.3:42922406-42922425 MS.gene96852:CDS 40.0%
TGAACACCAGGTTCAAGAAT+TGG + chr7.3:42922254-42922273 None:intergenic 40.0%
TGTGAGCCAAACCATTTGTA+AGG + chr7.3:42922741-42922760 None:intergenic 40.0%
TTTAGGAACCATTGCGAGAT+TGG - chr7.3:42921258-42921277 MS.gene96852:intron 40.0%
TTTAGTCTGTTCCAGGAGTT+TGG - chr7.3:42921679-42921698 MS.gene96852:CDS 40.0%
! ACCACTTCTTTTACGGAACT+AGG + chr7.3:42921715-42921734 None:intergenic 40.0%
! CCACTTCTTTTACGGAACTA+GGG + chr7.3:42921714-42921733 None:intergenic 40.0%
! GAACATGTGAAGTACTCTGT+TGG + chr7.3:42921466-42921485 None:intergenic 40.0%
! TACAAGCTTTAGTCTGTTCC+AGG - chr7.3:42921672-42921691 MS.gene96852:CDS 40.0%
!! AAAGTCTTGTTTGCAGAAGC+AGG - chr7.3:42921193-42921212 MS.gene96852:intron 40.0%
!! CAAGGTATTGTATGCTCAAG+GGG - chr7.3:42922010-42922029 MS.gene96852:CDS 40.0%
!! CTCCCTCAAGGATTTGTTAA+CGG - chr7.3:42921592-42921611 MS.gene96852:CDS 40.0%
!! TAATCTTCCGCTGAGTTGAT+TGG + chr7.3:42921406-42921425 None:intergenic 40.0%
!! TGAAGGTTGTTTCTCTACTG+AGG - chr7.3:42921357-42921376 MS.gene96852:CDS 40.0%
!!! GGTTTTTTATGCCAAACTCC+TGG + chr7.3:42921693-42921712 None:intergenic 40.0%
AACCATCCCTTGAGAGTTCA+AGG - chr7.3:42921913-42921932 MS.gene96852:CDS 45.0%
AACCTTGAACTCTCAAGGGA+TGG + chr7.3:42921918-42921937 None:intergenic 45.0%
AATGTGGTGACTCCTGTTGA+GGG - chr7.3:42922395-42922414 MS.gene96852:CDS 45.0%
AGAAGCAGGTAAGGACTTTG+TGG - chr7.3:42921207-42921226 MS.gene96852:intron 45.0%
AGCATAGGGCAAGTTACAGT+CGG - chr7.3:42921295-42921314 MS.gene96852:intron 45.0%
AGTGTGGCAGATCTTGATGA+AGG - chr7.3:42921340-42921359 MS.gene96852:intron 45.0%
ATCCTTGAGGGAGACGTATA+AGG + chr7.3:42921585-42921604 None:intergenic 45.0%
CAAATCGGTCAAGGTTGACT+TGG + chr7.3:42921880-42921899 None:intergenic 45.0%
CATTGCGAGATTGGTAGAGA+AGG - chr7.3:42921267-42921286 MS.gene96852:intron 45.0%
CCCTAGTTCCGTAAAAGAAG+TGG - chr7.3:42921711-42921730 MS.gene96852:CDS 45.0%
CCCTTAACATAACCCTCAAC+AGG + chr7.3:42922410-42922429 None:intergenic 45.0%
CTTCTCTACCAATCTCGCAA+TGG + chr7.3:42921269-42921288 None:intergenic 45.0%
CTTGTTTGCAGAAGCAGGTA+AGG - chr7.3:42921198-42921217 MS.gene96852:intron 45.0%
TAATGTGGTGACTCCTGTTG+AGG - chr7.3:42922394-42922413 MS.gene96852:CDS 45.0%
TTCCTTATACGTCTCCCTCA+AGG - chr7.3:42921580-42921599 MS.gene96852:CDS 45.0%
TTTAACTGTGGGGCAATGCA+AGG + chr7.3:42922212-42922231 None:intergenic 45.0%
!!! ATAATATTATTGTTTTATAT+AGG - chr7.3:42921824-42921843 MS.gene96852:CDS 5.0%
GCTGCAACCAATCAACTCAG+CGG - chr7.3:42921396-42921415 MS.gene96852:CDS 50.0%
GGTGGAATCACGCGGATATT+TGG - chr7.3:42922080-42922099 MS.gene96852:intron 50.0%
TTCCTTTGGGTGGAATCACG+CGG - chr7.3:42922072-42922091 MS.gene96852:intron 50.0%
!! TGTTCCTTGGGAAGCATCAG+CGG - chr7.3:42922110-42922129 MS.gene96852:intron 50.0%
ATCCGCGTGATTCCACCCAA+AGG + chr7.3:42922077-42922096 None:intergenic 55.0%
CAATCCGCTGATGCTTCCCA+AGG + chr7.3:42922117-42922136 None:intergenic 55.0%
GTGGGGCGTGCCAATTTCGA+TGG - chr7.3:42922628-42922647 MS.gene96852:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.3 gene 42921118 42922789 42921118 ID=MS.gene96852
chr7.3 mRNA 42921118 42922789 42921118 ID=MS.gene96852.t1;Parent=MS.gene96852
chr7.3 exon 42922151 42922789 42922151 ID=MS.gene96852.t1.exon1;Parent=MS.gene96852.t1
chr7.3 CDS 42922151 42922789 42922151 ID=cds.MS.gene96852.t1;Parent=MS.gene96852.t1
chr7.3 exon 42921342 42922061 42921342 ID=MS.gene96852.t1.exon2;Parent=MS.gene96852.t1
chr7.3 CDS 42921342 42922061 42921342 ID=cds.MS.gene96852.t1;Parent=MS.gene96852.t1
chr7.3 exon 42921118 42921210 42921118 ID=MS.gene96852.t1.exon3;Parent=MS.gene96852.t1
chr7.3 CDS 42921118 42921210 42921118 ID=cds.MS.gene96852.t1;Parent=MS.gene96852.t1
Gene Sequence

>MS.gene96852

ATGGCTGCTACTACTTCTACTCAAGCAGAGGAGCAGCATGTGTCCTTGAAACTTCTTTTGAACGAAAAAGGTAACAAAGTCTTGTTTGCAGAAGCAGGTAAGGACTTTGTGGATATTCTCTGTAGCTTCTTAACAATGCCTTTAGGAACCATTGCGAGATTGGTAGAGAAGGAATCTAGCATAGGGCAAGTTACAGTCGGTTGTCTAAACTCACTCTATAGAAGTGTGGCAGATCTTGATGAAGGTTGTTTCTCTACTGAGGCAATCAAGCAAATGTTGCTGCAACCAATCAACTCAGCGGAAGATTATTGCAACGCTCTTGAACTCATCATTGATGACAATCAACCAACAGAGTACTTCACATGTTCCTACTTTAGTGGTTGCTCCTATCGTGATATGATCACTTCAACGTATAAAGATAAACATAAATGCCAATGTGGTCGTTCTTTTACACTTCCAATTTTCCTTATACGTCTCCCTCAAGGATTTGTTAACGGTATAGCTACATATGTCATAACTGATGATCTGATTGTCATACCAAACTGTATTGACTATACAAGCTTTAGTCTGTTCCAGGAGTTTGGCATAAAAAACCCTAGTTCCGTAAAAGAAGTGGTTCTGAATATCACTAAAGAAAAGGTTTTGTATTTGAATATCACTGTTGTTTATAACTTCTATACAAACACCTCTCTTAATTTTTTTATTTATAATATTATTGTTTTATATAGGTACTTGATTTGCTAAAGTGTTGTTTGCTTTCCAAGTCAACCTTGACCGATTTGTTTTTAGGGAAGAAACCATCCCTTGAGAGTTCAAGGTTTTTCTCGTATGATGGTGAAATTGTTAAGGATATCAAAGTCATTCTGAAGCTGGTTATAAGAAAATCAGATAACAAGGTATTGTATGCTCAAGGGGAACAAGATTTTGCGAACTTACTTTTAAGTTTTCTTACATTTCCTTTGGGTGGAATCACGCGGATATTTGGAGAGAATTGTTCCTTGGGAAGCATCAGCGGATTGTACAAGAGTATCGTTGAGTTGAATGAAAATAAATATTTGATATCAAAAGAGGCTAAGAACAGGCTTGTTGATCCTTGCATTGCCCCACAGTTAAAGTTAAGCAATCAGATATTACCAATTCTTGAACCTGGTGTTCATGAATATCATGGTTATTTTGAAGGCATTGGTAACAGTAATAATGATATTGTTGTGGTTCAAATTTTCAAACCTGGTGTAGATAAGAGTTATGCTGGAAATTTTAAGAAACTGAATTCATCTAATGTGGTGACTCCTGTTGAGGGTTATGTTAAGGGTCCAGCTATGTATTTTGCTACAGATGATTTGGTTTTAGCACCCTTGACTCCAATTTCAGCTTTGGGTTTACTTAACCGATTGAATACTCCTCTTAATGACTTGAAGGAAAAAGTTATCACAATCGGCATCAAAGAGGTAAACCATAGTAAAATTTATATTAGATTTTTTAATCTTAAGTTTATTTAAATGTTCTACGTGTGGGGCGTGCCAATTTCGATGGACTAGTTTGACTTTTAAAAAATAAAATGCTTATTGTCTTGTTGCAGTGTCTTAGCATATTGAAGGCTTCTTTGACATCAACATCTGCCCTTACAAATGGTTTGGCTCACATGTTAGCCGAAGTTAAGGACGAGAAATGA
Protein sequence

>MS.gene96852.t1

MAATTSTQAEEQHVSLKLLLNEKGNKVLFAEAGKDFVDILCSFLTMPLGTIARLVEKESSIGQVTVGCLNSLYRSVADLDEGCFSTEAIKQMLLQPINSAEDYCNALELIIDDNQPTEYFTCSYFSGCSYRDMITSTYKDKHKCQCGRSFTLPIFLIRLPQGFVNGIATYVITDDLIVIPNCIDYTSFSLFQEFGIKNPSSVKEVVLNITKEKVLDLLKCCLLSKSTLTDLFLGKKPSLESSRFFSYDGEIVKDIKVILKLVIRKSDNKVLYAQGEQDFANLLLSFLTFPLGGITRIFGENCSLGSISGLYKSIVELNENKYLISKEAKNRLVDPCIAPQLKLSNQILPILEPGVHEYHGYFEGIGNSNNDIVVVQIFKPGVDKSYAGNFKKLNSSNVVTPVEGYVKGPAMYFATDDLVLAPLTPISALGLLNRLNTPLNDLKEKVITIGIKECLSILKASLTSTSALTNGLAHMLAEVKDEK