AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94777

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94777.t1 MTR_7g066340 80.753 478 89 2 1 477 1 476 0.0 766
MS.gene94777.t1 MTR_7g066310 76.520 477 41 5 1 477 1 406 0.0 697
MS.gene94777.t1 MTR_7g066350 66.071 448 138 6 9 449 6 446 0.0 569
MS.gene94777.t1 MTR_7g066280 67.735 437 67 3 91 477 1 413 0.0 563
MS.gene94777.t1 MTR_1g041315 61.099 455 154 7 1 436 1 451 0.0 531
MS.gene94777.t1 MTR_7g066260 57.669 489 185 8 6 477 9 492 1.89e-177 507
MS.gene94777.t1 MTR_7g066570 55.600 500 172 9 6 469 8 493 3.14e-167 484
MS.gene94777.t1 MTR_7g066400 56.009 466 156 9 1 449 1 434 1.37e-161 465
MS.gene94777.t1 MTR_7g066360 54.918 488 186 11 6 476 8 478 8.63e-155 449
MS.gene94777.t1 MTR_7g066290 55.385 455 161 10 9 453 12 434 4.92e-147 427
MS.gene94777.t1 MTR_7g012680 52.677 467 176 9 6 454 8 447 7.90e-144 420
MS.gene94777.t1 MTR_7g058710 48.884 493 195 10 1 452 1 477 2.50e-137 404
MS.gene94777.t1 MTR_7g066580 45.567 485 170 13 18 452 1 441 1.64e-120 360
MS.gene94777.t1 MTR_7g066580 29.457 258 133 7 3 233 206 441 1.59e-15 79.0
MS.gene94777.t1 MTR_7g058700 46.875 448 162 9 24 452 531 921 1.31e-111 351
MS.gene94777.t1 MTR_7g066430 41.309 489 232 12 12 452 4 485 1.97e-111 338
MS.gene94777.t1 MTR_7g066430 29.707 239 137 7 9 230 254 478 7.86e-13 70.9
MS.gene94777.t1 MTR_2g029400 45.106 470 149 10 6 440 8 403 3.94e-109 329
MS.gene94777.t1 MTR_7g066410 40.275 509 228 12 13 452 11 512 6.29e-107 327
MS.gene94777.t1 MTR_7g066410 31.799 239 126 9 12 230 284 505 1.81e-17 85.5
MS.gene94777.t1 MTR_7g066480 39.474 456 223 8 11 457 15 426 2.95e-95 295
MS.gene94777.t1 MTR_7g062300 38.831 479 252 13 1 448 1 469 2.06e-94 294
MS.gene94777.t1 MTR_7g062280 37.755 490 247 12 6 448 3 481 2.43e-93 291
MS.gene94777.t1 MTR_7g066490 40.000 450 217 9 12 459 16 414 4.25e-91 283
MS.gene94777.t1 MTR_7g063900 40.909 484 228 11 12 450 10 480 2.19e-90 284
MS.gene94777.t1 MTR_7g063660 36.897 477 253 11 11 452 8 471 1.11e-87 276
MS.gene94777.t1 MTR_7g063880 38.819 474 239 14 11 453 10 463 1.61e-86 273
MS.gene94777.t1 MTR_7g063820 38.223 484 250 13 6 450 3 476 4.98e-85 270
MS.gene94777.t1 MTR_7g063920 36.325 468 225 8 11 452 10 430 5.95e-82 260
MS.gene94777.t1 MTR_7g063920 27.586 203 112 9 259 445 7 190 8.31e-11 64.3
MS.gene94777.t1 MTR_7g063840 37.474 483 247 14 1 448 1 463 7.02e-82 261
MS.gene94777.t1 MTR_7g063890 38.477 486 242 12 11 452 26 498 9.69e-82 262
MS.gene94777.t1 MTR_7g063830 37.363 455 243 10 13 452 11 438 2.71e-81 259
MS.gene94777.t1 MTR_3g065200 37.419 465 199 15 10 439 1 408 1.57e-78 252
MS.gene94777.t1 MTR_3g007740 37.365 463 241 14 11 452 8 442 1.75e-76 246
MS.gene94777.t1 MTR_4g019310 34.073 496 257 15 9 448 5 486 9.02e-76 246
MS.gene94777.t1 MTR_4g019310 30.830 253 128 11 5 234 259 487 9.19e-15 77.0
MS.gene94777.t1 MTR_4g019340 35.639 477 246 12 13 441 39 502 1.54e-75 246
MS.gene94777.t1 MTR_4g019340 29.956 227 138 5 6 226 291 502 1.75e-15 79.3
MS.gene94777.t1 MTR_4g017830 34.263 502 255 14 13 452 13 501 1.91e-72 238
MS.gene94777.t1 MTR_4g017830 26.587 252 151 8 12 239 267 508 3.60e-12 68.9
MS.gene94777.t1 MTR_4g017440 34.068 499 253 13 13 449 15 499 1.82e-70 233
MS.gene94777.t1 MTR_7g063670 35.076 459 252 10 13 450 16 449 7.71e-70 229
MS.gene94777.t1 MTR_1g014060 56.621 219 89 5 21 237 9 223 1.12e-67 222
MS.gene94777.t1 MTR_1g014060 44.809 183 71 4 292 452 210 384 4.79e-34 132
MS.gene94777.t1 MTR_7g066680 46.154 299 98 5 214 449 37 335 2.51e-67 219
MS.gene94777.t1 MTR_4g017610 34.096 481 251 16 15 449 16 476 5.78e-67 223
MS.gene94777.t1 MTR_4g017410 33.401 494 248 15 13 448 10 480 7.48e-67 223
MS.gene94777.t1 MTR_4g017470 31.791 497 235 11 13 448 13 466 4.18e-63 213
MS.gene94777.t1 MTR_4g017470 28.625 269 152 12 5 245 227 483 1.90e-13 72.8
MS.gene94777.t1 MTR_4g017470 27.426 237 135 7 255 471 5 224 9.19e-13 70.5
MS.gene94777.t1 MTR_4g017550 31.780 472 236 18 41 448 20 469 6.90e-48 172
MS.gene94777.t1 MTR_4g017550 27.451 255 138 9 5 235 240 471 7.33e-14 73.9
MS.gene94777.t1 MTR_7g066390 51.124 178 53 3 303 476 1 148 1.57e-45 156
MS.gene94777.t1 MTR_7g062270 41.618 173 96 2 13 183 11 180 4.21e-36 137
MS.gene94777.t1 MTR_7g063720 33.491 212 124 3 256 452 17 226 3.22e-31 120
MS.gene94777.t1 MTR_7g063720 29.130 230 132 9 4 230 18 219 3.99e-17 81.3
MS.gene94777.t1 MTR_2g067310 45.087 173 55 5 23 195 58 190 5.48e-29 114
MS.gene94777.t1 MTR_7g063690 31.655 278 121 7 13 289 13 222 1.13e-27 111
MS.gene94777.t1 MTR_1g115440 33.473 239 136 6 11 236 10 238 1.85e-26 107
MS.gene94777.t1 MTR_8g023240 26.935 323 201 11 13 325 38 335 2.26e-26 112
MS.gene94777.t1 MTR_8g445860 30.453 243 151 6 4 237 5 238 1.57e-23 99.4
MS.gene94777.t1 MTR_7g100420 32.967 273 140 8 214 452 134 397 1.35e-22 100
MS.gene94777.t1 MTR_7g100420 50.725 69 30 1 3 67 30 98 1.77e-11 66.2
MS.gene94777.t1 MTR_7g063850 28.000 300 165 8 184 452 3 282 2.01e-22 97.4
MS.gene94777.t1 MTR_0150s0010 29.804 255 134 5 6 236 4 237 6.09e-21 92.0
MS.gene94777.t1 MTR_4g019330 35.632 174 79 7 276 446 32 175 1.78e-17 80.9
MS.gene94777.t1 MTR_1g115455 27.935 247 147 8 6 237 3 233 1.18e-16 79.7
MS.gene94777.t1 MTR_4g019240 38.393 112 57 4 5 108 6 113 1.77e-14 72.0
MS.gene94777.t1 MTR_1g115450 41.667 84 44 1 12 95 7 85 4.23e-14 69.7
MS.gene94777.t1 MTR_1g115470 39.048 105 56 3 12 114 6 104 8.31e-14 73.6
MS.gene94777.t1 MTR_0150s0030 39.362 94 51 2 6 98 2 90 2.13e-13 69.7
MS.gene94777.t1 MTR_8g044880 40.206 97 52 2 6 101 2 93 4.17e-13 70.1
MS.gene94777.t1 MTR_8g445910 40.426 94 50 2 6 98 2 90 1.97e-12 67.8
MS.gene94777.t1 MTR_8g445920 37.634 93 53 1 6 98 4 91 2.02e-12 63.9
MS.gene94777.t1 MTR_8g044890 37.634 93 53 1 6 98 4 91 2.02e-12 63.9
MS.gene94777.t1 MTR_1g115435 26.531 245 137 9 12 246 7 218 3.17e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94777.t1 AT5G01120 29.207 517 294 13 13 476 10 507 6.54e-62 210
MS.gene94777.t1 AT3G09140 30.040 496 293 11 12 458 9 499 1.17e-58 201
MS.gene94777.t1 AT3G09140 27.426 237 138 9 6 230 272 486 3.70e-12 68.9
MS.gene94777.t1 AT5G01140 30.754 491 287 12 12 476 9 472 2.63e-57 197
MS.gene94777.t1 AT5G43240 30.326 521 287 14 13 476 10 511 6.47e-57 197
MS.gene94777.t1 AT5G43240 30.326 521 287 14 13 476 10 511 6.47e-57 197
MS.gene94777.t1 AT5G43240 30.326 521 287 14 13 476 10 511 6.47e-57 197
MS.gene94777.t1 AT3G09140 28.352 522 296 11 12 458 9 527 1.24e-54 191
MS.gene94777.t1 AT3G09140 27.426 237 138 9 6 230 300 514 4.41e-12 68.6
MS.gene94777.t1 AT5G01150 30.579 484 282 13 12 453 9 480 1.98e-54 190
MS.gene94777.t1 AT3G09110 33.438 320 203 5 12 327 9 322 5.86e-51 177
MS.gene94777.t1 AT5G01130 30.396 454 285 11 12 452 9 444 2.25e-48 172
MS.gene94777.t1 AT3G09120 31.013 316 201 7 11 316 5 313 5.25e-39 144
MS.gene94777.t1 AT5G37320 27.215 474 293 16 19 452 18 479 8.76e-35 136
MS.gene94777.t1 AT5G43240 28.169 355 197 8 165 476 28 367 8.76e-26 108

Find 78 sgRNAs with CRISPR-Local

Find 151 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTTCCTCCACATCATTT+AGG 0.116915 7.1:-36222725 None:intergenic
TCTTGTCCACCAAAACTCTT+AGG 0.174508 7.1:-36221416 None:intergenic
GATCCTAAATCCCCTATTTC+TGG 0.194829 7.1:+36222597 MS.gene94777:CDS
CTAGCATATCCTCCAGAAAT+AGG 0.222209 7.1:-36222609 None:intergenic
AAGAAAACATACCTCTTTCT+TGG 0.258951 7.1:-36222006 None:intergenic
CCTCCAGAAATAGGGGATTT+AGG 0.261981 7.1:-36222600 None:intergenic
CATTTCCTCCACATCATTTA+GGG 0.283304 7.1:-36222724 None:intergenic
TGATCTTCTCAAATTGTCTT+TGG 0.284928 7.1:+36222131 MS.gene94777:CDS
CAAAGTAACCCTAAGAGTTT+TGG 0.291026 7.1:+36221407 MS.gene94777:CDS
ATTGAGTAGCATCTCCTTGC+AGG 0.299700 7.1:-36221634 None:intergenic
TAAGCGCCCGATGGGTTTAT+AGG 0.300844 7.1:-36221657 None:intergenic
CGGCATGCAAAATTGAAAAT+AGG 0.303590 7.1:+36221748 MS.gene94777:CDS
GATACCTAAACACAATTATA+AGG 0.312001 7.1:+36222548 MS.gene94777:CDS
TAGAGCACCATTAAAGATTA+TGG 0.313008 7.1:+36222629 MS.gene94777:CDS
TTAACCTCCATTTGGTTACT+TGG 0.318360 7.1:-36222216 None:intergenic
ACCCATCGGGCGCTTATTGC+AGG 0.321290 7.1:+36221664 MS.gene94777:CDS
CTTGGTGATGTTGATATTAA+CGG 0.332558 7.1:-36221988 None:intergenic
CGATTTCTTTACTCAAAATC+AGG 0.337067 7.1:-36221836 None:intergenic
AAACTTGTCATAAGAACATT+TGG 0.341319 7.1:-36221912 None:intergenic
TTGCTTTCTAAATATAAATT+CGG 0.342867 7.1:-36222172 None:intergenic
TCTGTCACCATAATCTTTAA+TGG 0.356635 7.1:-36222636 None:intergenic
AATATTGAAGCAGTGAGATT+TGG 0.357605 7.1:+36221549 MS.gene94777:CDS
AACCAAATGGAGGTTAATAT+TGG 0.358716 7.1:+36222222 MS.gene94777:CDS
TAGCATATCCTCCAGAAATA+GGG 0.363628 7.1:-36222608 None:intergenic
GAGGAAATGGTCGTTAATAT+TGG 0.365896 7.1:+36222738 MS.gene94777:CDS
TACCAATATTAACCTCCATT+TGG 0.389269 7.1:-36222224 None:intergenic
AAAGGAAGAATCTGATGAAA+TGG 0.399313 7.1:+36222251 MS.gene94777:CDS
TCAGATTGAATAGAAATCAT+TGG 0.402682 7.1:-36222504 None:intergenic
TTAAATCTCCTTCAGAAGCT+TGG 0.404186 7.1:+36221933 MS.gene94777:CDS
GGTACTGTTTGAGTTACTAT+AGG 0.405904 7.1:+36221769 MS.gene94777:CDS
GTTTAGGTATCGGTAATATC+TGG 0.406670 7.1:-36222536 None:intergenic
AAGTGGAAGTAGATCTGTTC+AGG 0.414712 7.1:+36223804 MS.gene94777:CDS
ACAGAGGTAGATTGACTTCA+AGG 0.415785 7.1:-36221718 None:intergenic
AAGATATGAAATACCATCAA+TGG 0.434003 7.1:-36222685 None:intergenic
CCTAAATGATGTGGAGGAAA+TGG 0.434219 7.1:+36222725 MS.gene94777:CDS
TCAAAATCTGCCTTTACAAC+CGG 0.452562 7.1:+36222912 MS.gene94777:CDS
TCTATTTGCTGAGGCAGATA+AGG 0.457603 7.1:+36221452 MS.gene94777:CDS
CTTGTCCACCAAAACTCTTA+GGG 0.457678 7.1:-36221415 None:intergenic
TTATAATTGTGTTTAGGTAT+CGG 0.468696 7.1:-36222546 None:intergenic
TTCATATCTTGAAAGAATGA+AGG 0.484244 7.1:+36222698 MS.gene94777:CDS
GGTTAATATTGGTAAAGAAA+AGG 0.492157 7.1:+36222233 MS.gene94777:CDS
AGCTTACAAAAGAGAATCCT+TGG 0.499942 7.1:-36222395 None:intergenic
TCCTGCAATAAGCGCCCGAT+GGG 0.500940 7.1:-36221665 None:intergenic
CTGGTTGAGACCGGTTGTAA+AGG 0.502849 7.1:-36222922 None:intergenic
GATGCTTGCAATAGTACCTA+AGG 0.512187 7.1:-36221511 None:intergenic
TACTGTACTAACCTATGTAC+TGG 0.514263 7.1:-36222941 None:intergenic
TGAGTTCAAACAAGTGTTTG+AGG 0.515978 7.1:+36222451 MS.gene94777:CDS
TTGTCAACTTGTACAGCTGA+GGG 0.525848 7.1:-36221387 None:intergenic
CTCAATCCTATAAACCCATC+GGG 0.528295 7.1:+36221651 MS.gene94777:CDS
TTGAATAGAAATCATTGGAA+TGG 0.528986 7.1:-36222499 None:intergenic
TATCAACATCACCAAGAAAG+AGG 0.532453 7.1:+36221995 MS.gene94777:CDS
TTTCTATTCAATCTGAACTC+AGG 0.539211 7.1:+36222511 MS.gene94777:CDS
GATTATGGTGACAGACGACT+TGG 0.540003 7.1:+36222644 MS.gene94777:CDS
ACTCCAATGTCATCCATTGA+TGG 0.546893 7.1:+36222672 MS.gene94777:CDS
GGTCGTTAATATTGGCAAGA+AGG 0.557875 7.1:+36222746 MS.gene94777:CDS
CATTGACTCCAAGCTTCTGA+AGG 0.561296 7.1:-36221941 None:intergenic
ATATGCAACACCGATCCCAT+TGG 0.564934 7.1:-36222369 None:intergenic
ACCTATGTACTGGTTGAGAC+CGG 0.565014 7.1:-36222931 None:intergenic
TTTGTCAACTTGTACAGCTG+AGG 0.572792 7.1:-36221388 None:intergenic
AGCATATCCTCCAGAAATAG+GGG 0.573043 7.1:-36222607 None:intergenic
TTCCTGCAATAAGCGCCCGA+TGG 0.577842 7.1:-36221666 None:intergenic
ACTCAATCCTATAAACCCAT+CGG 0.584196 7.1:+36221650 MS.gene94777:CDS
CTAAATATAAATTCGGACAG+AGG 0.588274 7.1:-36222165 None:intergenic
CAGAGGTAGATTGACTTCAA+GGG 0.594324 7.1:-36221717 None:intergenic
AAATAAAGTTCTATTTGCTG+AGG 0.602370 7.1:+36221443 MS.gene94777:CDS
ATACCATCAATGGATGACAT+TGG 0.606080 7.1:-36222675 None:intergenic
TGTTCCAAGTAACCAAATGG+AGG 0.609107 7.1:+36222212 MS.gene94777:CDS
TCGGTGTTGCATATTCTCCA+AGG 0.615896 7.1:+36222378 MS.gene94777:CDS
CGTTAATATTGGCAAGAAGG+AGG 0.619331 7.1:+36222749 MS.gene94777:CDS
ACCGGTCTCAACCAGTACAT+AGG 0.625446 7.1:+36222930 MS.gene94777:CDS
CCTAAATCCCCTATTTCTGG+AGG 0.628731 7.1:+36222600 MS.gene94777:CDS
ATTTCCTCCACATCATTTAG+GGG 0.634248 7.1:-36222723 None:intergenic
TTTCCTCCACATCATTTAGG+GGG 0.636216 7.1:-36222722 None:intergenic
TCTACACTCACAAACCTGCA+AGG 0.640445 7.1:+36221620 MS.gene94777:CDS
ATGCTTGCAATAGTACCTAA+GGG 0.654856 7.1:-36221510 None:intergenic
AATCTACCTCTGTGAGAATG+CGG 0.661023 7.1:+36221728 MS.gene94777:CDS
TGCATGCCGCATTCTCACAG+AGG 0.696727 7.1:-36221734 None:intergenic
AGGTACTATTGCAAGCATCG+TGG 0.724958 7.1:+36221515 MS.gene94777:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAAAAATTGAGTATAATAA+AGG - chr7.1:36223431-36223450 None:intergenic 10.0%
!!! TTTTGTTATTATTATAATGT+TGG - chr7.1:36222988-36223007 None:intergenic 10.0%
!! ATTTGTTTATATAACCATTA+AGG + chr7.1:36223295-36223314 MS.gene94777:intron 15.0%
!! TAAAAATAAAGGACTAATAT+TGG + chr7.1:36223078-36223097 MS.gene94777:intron 15.0%
!! TTGCTTTCTAAATATAAATT+CGG - chr7.1:36222175-36222194 None:intergenic 15.0%
!! AACAAATCTAAGTGAATTAA+TGG - chr7.1:36223282-36223301 None:intergenic 20.0%
!! CTAAAAATTCCATTAAATTG+TGG - chr7.1:36223121-36223140 None:intergenic 20.0%
!! TATTATTATAATGTTGGATG+AGG - chr7.1:36222982-36223001 None:intergenic 20.0%
!! TGAACTTTGGTTAAAAATAA+AGG + chr7.1:36223067-36223086 MS.gene94777:intron 20.0%
!! TGTACATGAACATATAATAA+AGG - chr7.1:36223777-36223796 None:intergenic 20.0%
!! TTATAATTGTGTTTAGGTAT+CGG - chr7.1:36222549-36222568 None:intergenic 20.0%
!! TTATTATATGTTCATGTACA+TGG + chr7.1:36223777-36223796 MS.gene94777:intron 20.0%
!! TTCTATCAAAATGTAATGAA+AGG + chr7.1:36223568-36223587 MS.gene94777:intron 20.0%
!!! TTTTCCTTATAATTGTGTTT+AGG - chr7.1:36222555-36222574 None:intergenic 20.0%
! AAACTTGTCATAAGAACATT+TGG - chr7.1:36221915-36221934 None:intergenic 25.0%
! AAGATATGAAATACCATCAA+TGG - chr7.1:36222688-36222707 None:intergenic 25.0%
! AATGAAAGGTAACCATATAT+TGG + chr7.1:36223582-36223601 MS.gene94777:intron 25.0%
! ACAAGAGTTAAATATGTTGT+TGG - chr7.1:36223180-36223199 None:intergenic 25.0%
! AGGAATCAAAAATGTATTTG+TGG + chr7.1:36221789-36221808 MS.gene94777:CDS 25.0%
! ATTTAGAGACCACAATTTAA+TGG + chr7.1:36223109-36223128 MS.gene94777:intron 25.0%
! CAACATATTTAACTCTTGTT+TGG + chr7.1:36223181-36223200 MS.gene94777:intron 25.0%
! GAGTGATTAAAAATGAAAGT+TGG + chr7.1:36223140-36223159 MS.gene94777:intron 25.0%
! GATACCTAAACACAATTATA+AGG + chr7.1:36222548-36222567 MS.gene94777:CDS 25.0%
! GGTTAATATTGGTAAAGAAA+AGG + chr7.1:36222233-36222252 MS.gene94777:CDS 25.0%
! TCAATATGAAAATAGTATGC+AGG - chr7.1:36223236-36223255 None:intergenic 25.0%
! TCAGATTGAATAGAAATCAT+TGG - chr7.1:36222507-36222526 None:intergenic 25.0%
! TGTTTATATAACCATTAAGG+AGG + chr7.1:36223298-36223317 MS.gene94777:intron 25.0%
! TTATAACATTTGAGAGTAGT+TGG + chr7.1:36223405-36223424 MS.gene94777:intron 25.0%
! TTCATATCTTGAAAGAATGA+AGG + chr7.1:36222698-36222717 MS.gene94777:CDS 25.0%
! TTGAATAGAAATCATTGGAA+TGG - chr7.1:36222502-36222521 None:intergenic 25.0%
!! AAATAAAGTTCTATTTGCTG+AGG + chr7.1:36221443-36221462 MS.gene94777:CDS 25.0%
!! TTTTAATCTACTCAAATCGT+TGG + chr7.1:36223336-36223355 MS.gene94777:intron 25.0%
!!! ATGAAAGTTGGTATATTTAG+TGG + chr7.1:36223152-36223171 MS.gene94777:intron 25.0%
!!! CTGATTTTGAGTAAAGAAAT+CGG + chr7.1:36221837-36221856 MS.gene94777:CDS 25.0%
!!! TACTATCTTTAGAATTTGAC+TGG + chr7.1:36223205-36223224 MS.gene94777:intron 25.0%
!!! TCAAAATCAGGATTTTTTCT+CGG - chr7.1:36221827-36221846 None:intergenic 25.0%
!!! TGAAAGTTGGTATATTTAGT+GGG + chr7.1:36223153-36223172 MS.gene94777:intron 25.0%
AAAGGAAGAATCTGATGAAA+TGG + chr7.1:36222251-36222270 MS.gene94777:CDS 30.0%
AACCAAATGGAGGTTAATAT+TGG + chr7.1:36222222-36222241 MS.gene94777:CDS 30.0%
AAGAAAACATACCTCTTTCT+TGG - chr7.1:36222009-36222028 None:intergenic 30.0%
AATATTGAAGCAGTGAGATT+TGG + chr7.1:36221549-36221568 MS.gene94777:CDS 30.0%
CAACCACAAGAAATCTAATT+TGG - chr7.1:36222859-36222878 None:intergenic 30.0%
CACATATTGAAGAATTAGTG+AGG - chr7.1:36222096-36222115 None:intergenic 30.0%
CGATTTCTTTACTCAAAATC+AGG - chr7.1:36221839-36221858 None:intergenic 30.0%
CTAAATATAAATTCGGACAG+AGG - chr7.1:36222168-36222187 None:intergenic 30.0%
CTCACTAATTCTTCAATATG+TGG + chr7.1:36222094-36222113 MS.gene94777:intron 30.0%
CTTCAATATGTGGTTTGAAT+AGG + chr7.1:36222104-36222123 MS.gene94777:intron 30.0%
GAACTTTCAGAATATTGTAC+AGG - chr7.1:36223458-36223477 None:intergenic 30.0%
GTTGAGAAAATGAGTAGTAA+AGG + chr7.1:36223649-36223668 MS.gene94777:intron 30.0%
TACCAATATTAACCTCCATT+TGG - chr7.1:36222227-36222246 None:intergenic 30.0%
TCACCAAATTAGATTTCTTG+TGG + chr7.1:36222853-36222872 MS.gene94777:intron 30.0%
TCATATCAGCATCCAATATA+TGG - chr7.1:36223597-36223616 None:intergenic 30.0%
TCTGTCACCATAATCTTTAA+TGG - chr7.1:36222639-36222658 None:intergenic 30.0%
TGATCTTCTCAAATTGTCTT+TGG + chr7.1:36222131-36222150 MS.gene94777:CDS 30.0%
TTTCTATTCAATCTGAACTC+AGG + chr7.1:36222511-36222530 MS.gene94777:CDS 30.0%
! TAGAGCACCATTAAAGATTA+TGG + chr7.1:36222629-36222648 MS.gene94777:CDS 30.0%
! TTTTGTTCCAAGTAACCAAA+TGG + chr7.1:36222209-36222228 MS.gene94777:CDS 30.0%
!! AGTTTTCTCACTTTTCCAAT+GGG + chr7.1:36222354-36222373 MS.gene94777:CDS 30.0%
!! CTTGGTGATGTTGATATTAA+CGG - chr7.1:36221991-36222010 None:intergenic 30.0%
!! TAGTTTTCTCACTTTTCCAA+TGG + chr7.1:36222353-36222372 MS.gene94777:CDS 30.0%
AAGAAAGAATGAACGAAAGG+TGG + chr7.1:36223672-36223691 MS.gene94777:intron 35.0%
ACTCAATCCTATAAACCCAT+CGG + chr7.1:36221650-36221669 MS.gene94777:CDS 35.0%
AGAAAGAATGAACGAAAGGT+GGG + chr7.1:36223673-36223692 MS.gene94777:intron 35.0%
AGCTTACAAAAGAGAATCCT+TGG - chr7.1:36222398-36222417 None:intergenic 35.0%
AGGAAGAAAGAATGAACGAA+AGG + chr7.1:36223669-36223688 MS.gene94777:intron 35.0%
ATACCATCAATGGATGACAT+TGG - chr7.1:36222678-36222697 None:intergenic 35.0%
ATGCTTGCAATAGTACCTAA+GGG - chr7.1:36221513-36221532 None:intergenic 35.0%
ATTAGATTTCTTGTGGTTGC+AGG + chr7.1:36222860-36222879 MS.gene94777:intron 35.0%
ATTTCCTCCACATCATTTAG+GGG - chr7.1:36222726-36222745 None:intergenic 35.0%
CAGTAATTTCTCCTCCTTAA+TGG - chr7.1:36223312-36223331 None:intergenic 35.0%
CATTTCCTCCACATCATTTA+GGG - chr7.1:36222727-36222746 None:intergenic 35.0%
CGGCATGCAAAATTGAAAAT+AGG + chr7.1:36221748-36221767 MS.gene94777:CDS 35.0%
GAGGAAATGGTCGTTAATAT+TGG + chr7.1:36222738-36222757 MS.gene94777:CDS 35.0%
GATATGATCTAACGGTAATG+AGG + chr7.1:36223610-36223629 MS.gene94777:intron 35.0%
TACTGTACTAACCTATGTAC+TGG - chr7.1:36222944-36222963 None:intergenic 35.0%
TAGCATATCCTCCAGAAATA+GGG - chr7.1:36222611-36222630 None:intergenic 35.0%
TAGTACTACACGTAACAAGT+CGG - chr7.1:36223545-36223564 None:intergenic 35.0%
TATATGTTCATGTACATGGC+AGG + chr7.1:36223781-36223800 MS.gene94777:intron 35.0%
TATCAACATCACCAAGAAAG+AGG + chr7.1:36221995-36222014 MS.gene94777:CDS 35.0%
TCAAAATCTGCCTTTACAAC+CGG + chr7.1:36222912-36222931 MS.gene94777:CDS 35.0%
TGAGTTCAAACAAGTGTTTG+AGG + chr7.1:36222451-36222470 MS.gene94777:CDS 35.0%
TGGATGCTGATATGATCTAA+CGG + chr7.1:36223602-36223621 MS.gene94777:intron 35.0%
TTAAATCTCCTTCAGAAGCT+TGG + chr7.1:36221933-36221952 MS.gene94777:CDS 35.0%
TTAACCTCCATTTGGTTACT+TGG - chr7.1:36222219-36222238 None:intergenic 35.0%
TTAGATTTCTTGTGGTTGCA+GGG + chr7.1:36222861-36222880 MS.gene94777:intron 35.0%
! AGCTTTTTAACATTGCCCTT+AGG + chr7.1:36221495-36221514 MS.gene94777:CDS 35.0%
! CAAAGTAACCCTAAGAGTTT+TGG + chr7.1:36221407-36221426 MS.gene94777:CDS 35.0%
! GGTACTGTTTGAGTTACTAT+AGG + chr7.1:36221769-36221788 MS.gene94777:CDS 35.0%
!! ATTCTGAAAGTTCTGAAGTC+TGG + chr7.1:36223465-36223484 MS.gene94777:intron 35.0%
!! GATTTTGTTTGTTGAAGCAG+AGG + chr7.1:36222308-36222327 MS.gene94777:CDS 35.0%
!! GTTTAGGTATCGGTAATATC+TGG - chr7.1:36222539-36222558 None:intergenic 35.0%
!!! ATGTTGGATGAGGTTTTGTT+TGG - chr7.1:36222972-36222991 None:intergenic 35.0%
!!! TTCTACTTTTGGCTTCTTCA+GGG - chr7.1:36223854-36223873 None:intergenic 35.0%
!!! TTTCTACTTTTGGCTTCTTC+AGG - chr7.1:36223855-36223874 None:intergenic 35.0%
AAGTGGAAGTAGATCTGTTC+AGG + chr7.1:36223804-36223823 MS.gene94777:CDS 40.0%
AATCTACCTCTGTGAGAATG+CGG + chr7.1:36221728-36221747 MS.gene94777:CDS 40.0%
ACTCCAATGTCATCCATTGA+TGG + chr7.1:36222672-36222691 MS.gene94777:CDS 40.0%
AGCATATCCTCCAGAAATAG+GGG - chr7.1:36222610-36222629 None:intergenic 40.0%
CCATTTCCTCCACATCATTT+AGG - chr7.1:36222728-36222747 None:intergenic 40.0%
CCTAAATGATGTGGAGGAAA+TGG + chr7.1:36222725-36222744 MS.gene94777:CDS 40.0%
CGAACATGTCACATGAACTT+TGG + chr7.1:36223054-36223073 MS.gene94777:intron 40.0%
CGTTAATATTGGCAAGAAGG+AGG + chr7.1:36222749-36222768 MS.gene94777:CDS 40.0%
CTAGCATATCCTCCAGAAAT+AGG - chr7.1:36222612-36222631 None:intergenic 40.0%
CTCAATCCTATAAACCCATC+GGG + chr7.1:36221651-36221670 MS.gene94777:CDS 40.0%
CTTGTCCACCAAAACTCTTA+GGG - chr7.1:36221418-36221437 None:intergenic 40.0%
GATCCTAAATCCCCTATTTC+TGG + chr7.1:36222597-36222616 MS.gene94777:CDS 40.0%
GATGCTTGCAATAGTACCTA+AGG - chr7.1:36221514-36221533 None:intergenic 40.0%
GGTCGTTAATATTGGCAAGA+AGG + chr7.1:36222746-36222765 MS.gene94777:CDS 40.0%
TCGGTTACTACTGATGTTAC+AGG - chr7.1:36223526-36223545 None:intergenic 40.0%
TCTAACGGTAATGAGGAGTA+AGG + chr7.1:36223617-36223636 MS.gene94777:intron 40.0%
TCTTGTCCACCAAAACTCTT+AGG - chr7.1:36221419-36221438 None:intergenic 40.0%
TGTTCCAAGTAACCAAATGG+AGG + chr7.1:36222212-36222231 MS.gene94777:CDS 40.0%
TTCATGTGACATGTTCGAAG+TGG - chr7.1:36223051-36223070 None:intergenic 40.0%
TTGGCAAGAAGGAGGTAAAA+AGG + chr7.1:36222757-36222776 MS.gene94777:intron 40.0%
TTGTCAACTTGTACAGCTGA+GGG - chr7.1:36221390-36221409 None:intergenic 40.0%
TTTCCTCCACATCATTTAGG+GGG - chr7.1:36222725-36222744 None:intergenic 40.0%
TTTGTCAACTTGTACAGCTG+AGG - chr7.1:36221391-36221410 None:intergenic 40.0%
! ACAGAGGTAGATTGACTTCA+AGG - chr7.1:36221721-36221740 None:intergenic 40.0%
! CAGAGGTAGATTGACTTCAA+GGG - chr7.1:36221720-36221739 None:intergenic 40.0%
! GGTTGTAAAGGCAGATTTTG+AGG - chr7.1:36222913-36222932 None:intergenic 40.0%
! TCTATTTGCTGAGGCAGATA+AGG + chr7.1:36221452-36221471 MS.gene94777:CDS 40.0%
!! AGTAACCCTAAGAGTTTTGG+TGG + chr7.1:36221410-36221429 MS.gene94777:CDS 40.0%
!! GAGTGTGTTGGTCTTCATTT+AGG + chr7.1:36222779-36222798 MS.gene94777:intron 40.0%
!! TCTCACTTTTCCAATGGGAT+CGG + chr7.1:36222359-36222378 MS.gene94777:CDS 40.0%
!! TGTTGGTCTTCATTTAGGAC+AGG + chr7.1:36222784-36222803 MS.gene94777:intron 40.0%
!!! TCTACTTTTGGCTTCTTCAG+GGG - chr7.1:36223853-36223872 None:intergenic 40.0%
AAGGAGAGTGAGAGTCATGA+AGG + chr7.1:36223700-36223719 MS.gene94777:intron 45.0%
AGGAGAGTGAGAGTCATGAA+GGG + chr7.1:36223701-36223720 MS.gene94777:intron 45.0%
ATATGCAACACCGATCCCAT+TGG - chr7.1:36222372-36222391 None:intergenic 45.0%
ATTGAGTAGCATCTCCTTGC+AGG - chr7.1:36221637-36221656 None:intergenic 45.0%
CCTCCAGAAATAGGGGATTT+AGG - chr7.1:36222603-36222622 None:intergenic 45.0%
GATTATGGTGACAGACGACT+TGG + chr7.1:36222644-36222663 MS.gene94777:CDS 45.0%
TCTACACTCACAAACCTGCA+AGG + chr7.1:36221620-36221639 MS.gene94777:CDS 45.0%
TGAACGAAAGGTGGGAATGA+AGG + chr7.1:36223681-36223700 MS.gene94777:intron 45.0%
TTCATGTACATGGCAGGAAG+TGG + chr7.1:36223787-36223806 MS.gene94777:intron 45.0%
! AGGTACTATTGCAAGCATCG+TGG + chr7.1:36221515-36221534 MS.gene94777:CDS 45.0%
! GGAGGTAAAAAGGAGTGTGT+TGG + chr7.1:36222767-36222786 MS.gene94777:intron 45.0%
!! ACCTATGTACTGGTTGAGAC+CGG - chr7.1:36222934-36222953 None:intergenic 45.0%
!! CATTGACTCCAAGCTTCTGA+AGG - chr7.1:36221944-36221963 None:intergenic 45.0%
!! CCTAAATCCCCTATTTCTGG+AGG + chr7.1:36222600-36222619 MS.gene94777:CDS 45.0%
!! TCGGTGTTGCATATTCTCCA+AGG + chr7.1:36222378-36222397 MS.gene94777:CDS 45.0%
!!! CTACTTTTGGCTTCTTCAGG+GGG - chr7.1:36223852-36223871 None:intergenic 45.0%
ACCGGTCTCAACCAGTACAT+AGG + chr7.1:36222930-36222949 MS.gene94777:CDS 50.0%
CTGGTTGAGACCGGTTGTAA+AGG - chr7.1:36222925-36222944 None:intergenic 50.0%
GAAGGTCCCCCTAAATGATG+TGG + chr7.1:36222716-36222735 MS.gene94777:CDS 50.0%
! TAAGCGCCCGATGGGTTTAT+AGG - chr7.1:36221660-36221679 None:intergenic 50.0%
GGTCCCCCTAAATGATGTGG+AGG + chr7.1:36222719-36222738 MS.gene94777:CDS 55.0%
TCCTGCAATAAGCGCCCGAT+GGG - chr7.1:36221668-36221687 None:intergenic 55.0%
TGCATGCCGCATTCTCACAG+AGG - chr7.1:36221737-36221756 None:intergenic 55.0%
TTCCTGCAATAAGCGCCCGA+TGG - chr7.1:36221669-36221688 None:intergenic 55.0%
ACCCATCGGGCGCTTATTGC+AGG + chr7.1:36221664-36221683 MS.gene94777:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 36221375 36223879 36221375 ID=MS.gene94777
chr7.1 mRNA 36221375 36223879 36221375 ID=MS.gene94777.t1;Parent=MS.gene94777
chr7.1 exon 36221375 36222016 36221375 ID=MS.gene94777.t1.exon1;Parent=MS.gene94777.t1
chr7.1 CDS 36221375 36222016 36221375 ID=cds.MS.gene94777.t1;Parent=MS.gene94777.t1
chr7.1 exon 36222126 36222770 36222126 ID=MS.gene94777.t1.exon2;Parent=MS.gene94777.t1
chr7.1 CDS 36222126 36222770 36222126 ID=cds.MS.gene94777.t1;Parent=MS.gene94777.t1
chr7.1 exon 36222882 36222951 36222882 ID=MS.gene94777.t1.exon3;Parent=MS.gene94777.t1
chr7.1 CDS 36222882 36222951 36222882 ID=cds.MS.gene94777.t1;Parent=MS.gene94777.t1
chr7.1 exon 36223803 36223879 36223803 ID=MS.gene94777.t1.exon4;Parent=MS.gene94777.t1
chr7.1 CDS 36223803 36223879 36223803 ID=cds.MS.gene94777.t1;Parent=MS.gene94777.t1
Gene Sequence

>MS.gene94777

ATGACTGGAAATCCCTCAGCTGTACAAGTTGACAAAGTAACCCTAAGAGTTTTGGTGGACAAGAAGAAAAATAAAGTTCTATTTGCTGAGGCAGATAAGGATTTTGTTGATGTTCTTTTGAGCTTTTTAACATTGCCCTTAGGTACTATTGCAAGCATCGTGGCTAAAGAGTCAAATATTGAAGCAGTGAGATTTGGCAGCATTAGTTCACTCTATCAAAGTGTGTCAGTTCTTGATCAACGATATCTACACTCACAAACCTGCAAGGAGATGCTACTCAATCCTATAAACCCATCGGGCGCTTATTGCAGGAATATGAAACTGAACATTGACAATACTGAGCCCTTGAAGTCAATCTACCTCTGTGAGAATGCGGCATGCAAAATTGAAAATAGGTACTGTTTGAGTTACTATAGGAATCAAAAATGTATTTGTGGAAAGCTGTTGAACCGAGAAAAAATCCTGATTTTGAGTAAAGAAATCGGTTTTGTTAATGAAACGTCGACGTTTATTGTATCTGATGATCTTTATGTTATGCCAAATGTTCTTATGACAAGTTTAAATCTCCTTCAGAAGCTTGGAGTCAATGACATTGATGCTATTGATAAACAAACCGTTAATATCAACATCACCAAGAAAGAGGTATGTTTTCTTATTCTGTGTTTGTATGACATATTTTTTGTTCATTATTATTATTATTATTATTTATTGTTTTTTGCCTCACTAATTCTTCAATATGTGGTTTGAATAGGTAGTTGATCTTCTCAAATTGTCTTTGGTCTCAAAAACTCCTCTGTCCGAATTTATATTTAGAAAGCAACAATCTGTTGAAATTTTTGTTCCAAGTAACCAAATGGAGGTTAATATTGGTAAAGAAAAGGAAGAATCTGATGAAATGGTTGTGAGAGTACTAAGAAGAAAATCAAATGAACAGATTTTGTTTGTTGAAGCAGAGGATGATTTTGCTGACTTCATTTTTAGTTTTCTCACTTTTCCAATGGGATCGGTGTTGCATATTCTCCAAGGATTCTCTTTTGTAAGCTGCATTGATAATTTATACAAGAGCGTGACTGAATTGAGTTCAAACAAGTGTTTGAGGTCACAACTTATGAAAGACAGACTAACCATTCCAATGATTTCTATTCAATCTGAACTCAGGAGCCAGATATTACCGATACCTAAACACAATTATAAGGAAAAAAGTATGCTACATAAATTTGTTGATCCTAAATCCCCTATTTCTGGAGGATATGCTAGAGCACCATTAAAGATTATGGTGACAGACGACTTGGTTGTGACTCCAATGTCATCCATTGATGGTATTTCATATCTTGAAAGAATGAAGGTCCCCCTAAATGATGTGGAGGAAATGGTCGTTAATATTGGCAAGAAGGAGGTAAAAAGGAGTGTGTTGGTCTTCATTTAGGACAGGACACAGTCTTTCATTTTAATATTTCTTGTATTAGATTCATAACAACTCACCAAATTAGATTTCTTGTGGTTGCAGGGTCTCAGCATACTTATAGCTTCATTGACCTCAAAATCTGCCTTTACAACCGGTCTCAACCAGTACATAGGTTAGTACAGTATTAGACCAAACAAAACCTCATCCAACATTATAATAATAACAAAAAATAATATTAAAGATCATCGACAAAATTCATCTCAAACAGCCACTTCGAACATGTCACATGAACTTTGGTTAAAAATAAAGGACTAATATTGGTAACAAAAATTTAGAGACCACAATTTAATGGAATTTTTAGAGTGATTAAAAATGAAAGTTGGTATATTTAGTGGGACCAACAACATATTTAACTCTTGTTTGGATACTATCTTTAGAATTTGACTGGATGTGCCTGCATACTATTTTCATATTGAAGTACTTATGTAAACTAACATAGCCATTAATTCACTTAGATTTGTTTATATAACCATTAAGGAGGAGAAATTACTGACTATTTTAATCTACTCAAATCGTTGGTGCTACGCAATTTCTGCTTATAAAAATTTTAGATAACTGCATTGAATTATAACATTTGAGAGTAGTTGGCCTTTATTATACTCAATTTTTATGTTTCCTGTACAATATTCTGAAAGTTCTGAAGTCTGGTAATTGTTTCTTTTCAATTCTCATCAACATTATTTCCTGTAACATCAGTAGTAACCGACTTGTTACGTGTAGTACTAATTTTCTATCAAAATGTAATGAAAGGTAACCATATATTGGATGCTGATATGATCTAACGGTAATGAGGAGTAAGGACAGTTAATGTTGAGAAAATGAGTAGTAAAGGAAGAAAGAATGAACGAAAGGTGGGAATGAAGGAGAGTGAGAGTCATGAAGGGAGTTTAATCTTGAATATGAAGTTATTAATTTTGAATATGTACTAAATACTCCTTTATTATATGTTCATGTACATGGCAGGAAGTGGAAGTAGATCTGTTCAGGCTAATTTGTCATCTAATGCTAGCCCCCTGAAGAAGCCAAAAGTAGAAAAATGA
Protein sequence

>MS.gene94777.t1

MTGNPSAVQVDKVTLRVLVDKKKNKVLFAEADKDFVDVLLSFLTLPLGTIASIVAKESNIEAVRFGSISSLYQSVSVLDQRYLHSQTCKEMLLNPINPSGAYCRNMKLNIDNTEPLKSIYLCENAACKIENRYCLSYYRNQKCICGKLLNREKILILSKEIGFVNETSTFIVSDDLYVMPNVLMTSLNLLQKLGVNDIDAIDKQTVNINITKKEVVDLLKLSLVSKTPLSEFIFRKQQSVEIFVPSNQMEVNIGKEKEESDEMVVRVLRRKSNEQILFVEAEDDFADFIFSFLTFPMGSVLHILQGFSFVSCIDNLYKSVTELSSNKCLRSQLMKDRLTIPMISIQSELRSQILPIPKHNYKEKSMLHKFVDPKSPISGGYARAPLKIMVTDDLVVTPMSSIDGISYLERMKVPLNDVEEMVVNIGKKEGLSILIASLTSKSAFTTGLNQYIGSGSRSVQANLSSNASPLKKPKVEK