AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055075

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055075.t1 MTR_7g066310 59.896 384 131 4 1 366 13 391 6.85e-151 432
MS.gene055075.t1 MTR_7g066580 47.955 440 133 8 1 346 1 438 2.35e-126 371
MS.gene055075.t1 MTR_7g012680 51.402 428 123 8 1 349 20 441 8.57e-125 367
MS.gene055075.t1 MTR_7g066350 70.800 250 68 2 118 363 211 459 3.01e-113 338
MS.gene055075.t1 MTR_7g066350 63.121 141 47 1 1 141 15 150 2.19e-52 181
MS.gene055075.t1 MTR_7g066340 45.880 449 155 11 1 366 18 461 5.05e-107 323
MS.gene055075.t1 MTR_7g066400 64.032 253 79 3 118 358 190 442 6.59e-106 319
MS.gene055075.t1 MTR_7g066400 61.947 113 23 3 1 110 18 113 3.98e-33 128
MS.gene055075.t1 MTR_1g041315 69.333 225 64 2 118 337 227 451 1.18e-104 317
MS.gene055075.t1 MTR_1g041315 65.254 118 40 1 1 118 20 136 1.67e-47 168
MS.gene055075.t1 MTR_2g029400 46.699 409 127 11 2 343 21 405 6.06e-104 312
MS.gene055075.t1 MTR_1g014060 47.606 376 163 10 4 349 9 380 3.74e-94 287
MS.gene055075.t1 MTR_7g066570 43.478 460 148 15 1 350 20 477 2.78e-90 282
MS.gene055075.t1 MTR_7g066280 42.680 403 116 7 74 366 1 398 2.00e-89 275
MS.gene055075.t1 MTR_7g066260 59.761 251 83 5 112 349 213 458 1.24e-84 266
MS.gene055075.t1 MTR_7g066260 70.536 112 30 2 1 111 21 130 2.55e-44 160
MS.gene055075.t1 MTR_7g066680 46.980 298 93 6 118 350 38 335 7.34e-73 231
MS.gene055075.t1 MTR_7g066490 39.467 413 155 8 1 349 22 403 1.55e-72 232
MS.gene055075.t1 MTR_7g063920 34.856 416 198 7 1 349 17 426 1.05e-70 228
MS.gene055075.t1 MTR_7g063920 28.497 193 118 8 164 347 10 191 3.46e-12 67.8
MS.gene055075.t1 MTR_7g058710 46.715 274 100 7 118 350 206 474 1.22e-64 213
MS.gene055075.t1 MTR_7g058710 56.934 137 46 2 1 137 18 141 1.33e-41 152
MS.gene055075.t1 MTR_7g058700 50.215 233 77 4 118 350 725 918 1.68e-62 215
MS.gene055075.t1 MTR_7g058700 61.765 102 24 2 9 110 533 619 2.60e-30 123
MS.gene055075.t1 MTR_7g066360 52.697 241 95 5 118 349 215 445 8.07e-62 206
MS.gene055075.t1 MTR_7g066360 68.750 112 33 1 1 112 20 129 1.01e-43 158
MS.gene055075.t1 MTR_7g062300 33.187 455 195 14 1 349 18 469 2.29e-61 204
MS.gene055075.t1 MTR_7g066290 54.202 238 78 5 118 350 219 430 1.39e-60 201
MS.gene055075.t1 MTR_7g066290 71.429 112 29 3 1 111 21 130 4.89e-43 155
MS.gene055075.t1 MTR_7g066430 41.758 273 118 5 118 349 209 481 7.39e-57 193
MS.gene055075.t1 MTR_7g066430 51.818 110 52 1 1 110 10 118 5.30e-31 123
MS.gene055075.t1 MTR_7g063900 34.194 465 188 11 1 349 16 478 2.63e-53 184
MS.gene055075.t1 MTR_3g065200 32.629 426 175 11 1 340 9 408 2.06e-51 178
MS.gene055075.t1 MTR_4g017470 29.801 453 210 10 1 349 18 466 3.24e-49 173
MS.gene055075.t1 MTR_4g017470 29.412 204 108 6 168 349 15 204 1.52e-11 65.9
MS.gene055075.t1 MTR_7g066410 38.628 277 126 4 118 350 233 509 8.69e-48 169
MS.gene055075.t1 MTR_7g066410 57.798 109 45 1 2 110 17 124 2.80e-35 135
MS.gene055075.t1 MTR_7g100420 33.418 392 180 13 1 352 45 395 7.57e-42 151
MS.gene055075.t1 MTR_7g066390 47.159 176 61 2 206 375 1 150 6.53e-41 142
MS.gene055075.t1 MTR_7g066480 38.462 234 112 4 118 349 214 417 2.79e-38 142
MS.gene055075.t1 MTR_7g066480 58.621 116 42 2 1 116 22 131 1.23e-31 124
MS.gene055075.t1 MTR_7g062280 33.208 265 137 4 118 349 224 481 3.89e-37 140
MS.gene055075.t1 MTR_7g062280 52.294 109 51 1 1 109 16 123 1.39e-27 114
MS.gene055075.t1 MTR_7g063720 37.264 212 117 3 158 353 15 226 5.35e-37 134
MS.gene055075.t1 MTR_4g017830 34.875 281 131 6 118 349 220 497 8.50e-37 140
MS.gene055075.t1 MTR_4g017830 43.478 115 59 2 1 109 18 132 2.61e-19 89.7
MS.gene055075.t1 MTR_7g063820 34.815 270 133 6 118 350 212 475 6.65e-36 137
MS.gene055075.t1 MTR_7g063820 54.310 116 51 2 1 116 16 129 5.54e-29 117
MS.gene055075.t1 MTR_3g007740 37.751 249 132 7 118 349 196 438 1.99e-35 135
MS.gene055075.t1 MTR_3g007740 52.041 98 35 1 1 98 15 100 7.19e-21 94.0
MS.gene055075.t1 MTR_4g019310 33.696 276 127 8 118 349 223 486 1.14e-34 134
MS.gene055075.t1 MTR_4g019310 42.400 125 55 3 1 117 14 129 1.79e-21 96.3
MS.gene055075.t1 MTR_7g063830 35.270 241 133 5 118 350 210 435 1.36e-32 127
MS.gene055075.t1 MTR_7g063830 50.909 110 54 0 1 110 16 125 2.05e-30 121
MS.gene055075.t1 MTR_4g019340 35.743 249 132 5 118 341 256 501 1.89e-32 127
MS.gene055075.t1 MTR_4g019340 43.333 120 57 1 1 109 44 163 8.67e-20 91.3
MS.gene055075.t1 MTR_4g019340 34.513 113 67 2 4 116 312 417 3.36e-12 68.2
MS.gene055075.t1 MTR_7g063660 31.835 267 143 5 118 350 207 468 6.82e-32 125
MS.gene055075.t1 MTR_7g063660 54.206 107 48 1 1 107 15 120 8.57e-32 125
MS.gene055075.t1 MTR_7g063840 32.319 263 140 6 118 349 208 463 8.62e-32 125
MS.gene055075.t1 MTR_7g063840 56.000 100 44 0 1 100 16 115 1.84e-27 113
MS.gene055075.t1 MTR_7g063880 52.273 132 61 2 1 132 17 146 2.79e-31 124
MS.gene055075.t1 MTR_7g063880 35.206 267 120 12 118 349 210 458 2.91e-31 124
MS.gene055075.t1 MTR_7g063670 34.510 255 152 6 118 361 208 458 7.05e-31 122
MS.gene055075.t1 MTR_7g063670 44.762 105 45 2 1 105 21 112 6.26e-17 82.4
MS.gene055075.t1 MTR_7g063890 53.448 116 49 2 1 116 33 143 8.73e-31 123
MS.gene055075.t1 MTR_7g063890 36.000 275 127 9 118 349 226 494 4.80e-24 103
MS.gene055075.t1 MTR_4g017610 33.712 264 134 9 118 350 223 476 5.20e-29 117
MS.gene055075.t1 MTR_4g017610 47.414 116 53 3 2 109 20 135 2.42e-22 98.6
MS.gene055075.t1 MTR_4g017550 32.246 276 140 9 118 349 197 469 5.32e-28 114
MS.gene055075.t1 MTR_4g017550 35.644 101 52 2 4 104 256 343 9.44e-11 63.5
MS.gene055075.t1 MTR_7g062270 56.000 100 44 0 1 100 16 115 5.69e-28 113
MS.gene055075.t1 MTR_4g017440 31.408 277 143 5 118 350 226 499 3.28e-27 112
MS.gene055075.t1 MTR_4g017440 44.538 119 54 3 1 107 20 138 9.22e-20 90.9
MS.gene055075.t1 MTR_7g063850 30.544 239 123 6 159 364 60 288 4.87e-27 108
MS.gene055075.t1 MTR_4g017410 31.439 264 141 8 118 349 225 480 1.32e-23 102
MS.gene055075.t1 MTR_4g017410 46.218 119 54 2 1 109 15 133 2.53e-23 101
MS.gene055075.t1 MTR_8g445860 28.261 230 120 6 158 346 6 231 1.04e-20 90.5
MS.gene055075.t1 MTR_8g445860 36.709 79 45 1 1 79 19 92 7.67e-11 62.0
MS.gene055075.t1 MTR_2g067310 67.213 61 20 0 6 66 58 118 1.80e-20 89.7
MS.gene055075.t1 MTR_0150s0010 28.444 225 119 4 163 346 8 231 6.03e-19 85.5
MS.gene055075.t1 MTR_0150s0010 39.241 79 43 1 1 79 16 89 6.30e-11 62.4
MS.gene055075.t1 MTR_1g115440 29.075 227 115 8 164 347 10 233 1.16e-18 84.7
MS.gene055075.t1 MTR_4g019240 47.126 87 38 3 2 80 20 106 3.47e-16 76.3
MS.gene055075.t1 MTR_7g063760 48.649 74 36 2 289 361 2 74 1.03e-14 68.9
MS.gene055075.t1 MTR_1g115450 37.975 79 44 1 1 79 13 86 2.61e-12 64.3
MS.gene055075.t1 MTR_1g115455 32.773 119 66 4 1 113 15 125 9.30e-12 64.7
MS.gene055075.t1 MTR_8g023240 25.839 298 171 10 118 374 223 511 4.36e-11 64.7
MS.gene055075.t1 MTR_1g115470 39.506 81 44 1 1 81 12 87 8.46e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055075.t1 AT3G09110 48.598 107 54 1 1 107 15 120 1.20e-25 106
MS.gene055075.t1 AT3G09140 45.133 113 59 2 1 111 15 126 1.08e-22 99.8
MS.gene055075.t1 AT3G09140 29.889 271 142 8 118 349 228 489 2.10e-20 92.8
MS.gene055075.t1 AT5G01140 28.720 289 164 8 118 373 193 472 1.19e-22 99.4
MS.gene055075.t1 AT3G09140 45.133 113 59 2 1 111 15 126 1.24e-22 99.8
MS.gene055075.t1 AT3G09140 29.889 271 142 8 118 349 256 517 2.76e-20 92.8
MS.gene055075.t1 AT5G01120 44.762 105 57 1 1 105 15 118 6.41e-22 97.4
MS.gene055075.t1 AT5G01120 28.467 274 149 7 118 349 217 485 7.50e-20 91.3
MS.gene055075.t1 AT5G43240 42.105 114 61 2 1 110 15 127 2.06e-21 95.9
MS.gene055075.t1 AT5G43240 30.258 271 143 9 121 349 223 489 1.23e-18 87.8
MS.gene055075.t1 AT5G43240 42.105 114 61 2 1 110 15 127 2.06e-21 95.9
MS.gene055075.t1 AT5G43240 30.258 271 143 9 121 349 223 489 1.23e-18 87.8
MS.gene055075.t1 AT5G43240 42.105 114 61 2 1 110 15 127 2.06e-21 95.9
MS.gene055075.t1 AT5G43240 30.258 271 143 9 121 349 223 489 1.23e-18 87.8
MS.gene055075.t1 AT3G09120 44.898 98 53 1 1 98 12 108 4.75e-20 90.1
MS.gene055075.t1 AT5G01150 45.000 100 55 0 1 100 15 114 6.22e-20 91.7
MS.gene055075.t1 AT5G01150 29.646 226 119 7 158 349 256 475 1.27e-15 78.6
MS.gene055075.t1 AT5G01130 28.287 251 146 8 118 349 205 440 1.62e-19 90.1
MS.gene055075.t1 AT5G01130 40.367 109 59 1 2 104 16 124 5.60e-18 85.5
MS.gene055075.t1 AT5G43240 29.712 313 170 12 105 373 61 367 9.04e-19 87.0
MS.gene055075.t1 AT5G37320 40.196 102 59 2 5 105 19 119 4.99e-17 82.8
MS.gene055075.t1 AT5G37320 27.138 269 137 9 121 350 228 476 6.77e-14 73.2

Find 78 sgRNAs with CRISPR-Local

Find 111 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTCAGTTTCATATTT+TGG 0.076946 7.4:-38078796 None:intergenic
CCCTTTCTTCCACGTCATTA+AGG 0.156917 7.4:-38079820 None:intergenic
TGACTGACTTTATCTTTAAA+AGG 0.177394 7.4:+38079270 MS.gene055075:CDS
CTAGTAAATCCTCCTGAAAT+AGG 0.201033 7.4:-38079704 None:intergenic
CGAGAAATCTATGGGAGTTT+TGG 0.236083 7.4:+38079318 MS.gene055075:CDS
GATCCTAAATCCCCTATTTC+AGG 0.246380 7.4:+38079692 MS.gene055075:CDS
CCTCCTGAAATAGGGGATTT+AGG 0.250440 7.4:-38079695 None:intergenic
TTTCCCGGCAGTATGGAATT+AGG 0.305303 7.4:+38079612 MS.gene055075:CDS
TCTTTCTAAATATGAAATAA+TGG 0.315423 7.4:-38079786 None:intergenic
TAGTAAATCCTCCTGAAATA+GGG 0.341655 7.4:-38079703 None:intergenic
AATATGGAAGCAGTAAAATT+TGG 0.347826 7.4:+38078662 MS.gene055075:CDS
ATTTAGACCCGAGAAATCTA+TGG 0.358020 7.4:+38079309 MS.gene055075:CDS
CGGCCTCAACCTTTGCGTTA+TGG 0.358848 7.4:+38080025 MS.gene055075:CDS
CGTGGCTAAGGAGTCAAATA+TGG 0.360424 7.4:+38078646 MS.gene055075:CDS
TCTGTCACCATGAATGTTAC+TGG 0.360734 7.4:-38079731 None:intergenic
CCTCCTCTTTCCCGGCAGTA+TGG 0.364490 7.4:+38079605 MS.gene055075:CDS
CCTTTCTTCCACGTCATTAA+GGG 0.369088 7.4:-38079819 None:intergenic
ACAGAAGAAGTTTGACTTCA+AGG 0.383899 7.4:-38078831 None:intergenic
GCAGTGTTACATGTGCTTCA+AGG 0.393480 7.4:+38079479 MS.gene055075:CDS
ATCTTGACCAACAATATATA+TGG 0.395510 7.4:+38078717 MS.gene055075:CDS
CAAAACTCCCATAGATTTCT+CGG 0.397186 7.4:-38079317 None:intergenic
AGCTTCTTAACATTGCCTTT+AGG 0.397252 7.4:+38078608 MS.gene055075:CDS
AAAGTTGTTTATGTAGAGGC+TGG 0.400881 7.4:+38078560 MS.gene055075:CDS
TCAACATATTTATAATAGAT+AGG 0.404479 7.4:-38079671 None:intergenic
TAACCAGACCTCCTCTTTCC+CGG 0.412402 7.4:+38079597 MS.gene055075:CDS
GAAGTTTGACTTCAAGGGTT+CGG 0.417488 7.4:-38078825 None:intergenic
CAGAAGAAGTTTGACTTCAA+GGG 0.429394 7.4:-38078830 None:intergenic
TAAAGATAAAGTCAGTCAAA+GGG 0.446934 7.4:-38079265 None:intergenic
AGTTATGTAACGGTAATATC+TGG 0.450579 7.4:-38079637 None:intergenic
CCCTTAATGACGTGGAAGAA+AGG 0.451121 7.4:+38079819 MS.gene055075:CDS
GACTGACTTTATCTTTAAAA+GGG 0.464589 7.4:+38079271 MS.gene055075:CDS
CTGCCGGGAAAGAGGAGGTC+TGG 0.472647 7.4:-38079600 None:intergenic
CAGTGTTACATGTGCTTCAA+GGG 0.473386 7.4:+38079480 MS.gene055075:CDS
CTACTCAAGCCAAGAAACTC+GGG 0.477370 7.4:+38078761 MS.gene055075:CDS
GTACATGACTTGCTTGAGTC+CGG 0.482695 7.4:+38079538 MS.gene055075:CDS
TTCATATTTAGAAAGAATGA+AGG 0.482812 7.4:+38079793 MS.gene055075:CDS
TTAAAGATAAAGTCAGTCAA+AGG 0.488360 7.4:-38079266 None:intergenic
TAGAGGTCCAGTAACATTCA+TGG 0.489222 7.4:+38079724 MS.gene055075:CDS
ACGTGGAAGAAAGGGTCATC+AGG 0.490313 7.4:+38079828 MS.gene055075:CDS
GGTTCCTAATTCCATACTGC+CGG 0.491898 7.4:-38079616 None:intergenic
TGTTTATGTAGAGGCTGGGA+AGG 0.499987 7.4:+38078565 MS.gene055075:CDS
GAAGAAAGTTGTTTATGTAG+AGG 0.504265 7.4:+38078556 MS.gene055075:CDS
GAGTTATGGTGGACAAAGAA+AGG 0.506158 7.4:+38078534 None:intergenic
AGACAATCCTTCTGATGAAA+TGG 0.507091 7.4:+38079352 MS.gene055075:CDS
GCTACTCAAGCCAAGAAACT+CGG 0.517391 7.4:+38078760 MS.gene055075:CDS
AAGTTGTTTATGTAGAGGCT+GGG 0.518284 7.4:+38078561 MS.gene055075:CDS
GGTCATCAGGATTGGTCGGA+AGG 0.519466 7.4:+38079841 MS.gene055075:CDS
TTCACAACCATTTCATCAGA+AGG 0.520257 7.4:-38079359 None:intergenic
TCTGTGACCATATATATTGT+TGG 0.521715 7.4:-38078724 None:intergenic
CCTTAATGACGTGGAAGAAA+GGG 0.526797 7.4:+38079820 MS.gene055075:CDS
ATTCCATACTGCCGGGAAAG+AGG 0.532113 7.4:-38079608 None:intergenic
ATTCATGGTGACAGACGACT+TGG 0.537942 7.4:+38079739 MS.gene055075:CDS
GAAGAAAGGGTCATCAGGAT+TGG 0.539346 7.4:+38079833 MS.gene055075:CDS
GCGCCATAACGCAAAGGTTG+AGG 0.541410 7.4:-38080028 None:intergenic
CTTTCTTCCACGTCATTAAG+GGG 0.544228 7.4:-38079818 None:intergenic
TCTGACAATAAACATCTATC+CGG 0.552620 7.4:-38079557 None:intergenic
AAAACTCCCATAGATTTCTC+GGG 0.552726 7.4:-38079316 None:intergenic
TATTGCACGACTCGTGGCTA+AGG 0.555083 7.4:+38078634 MS.gene055075:CDS
TTTAGACCCGAGAAATCTAT+GGG 0.555435 7.4:+38079310 MS.gene055075:CDS
AGTAAATCCTCCTGAAATAG+GGG 0.565277 7.4:-38079702 None:intergenic
GTTCCTAATTCCATACTGCC+GGG 0.566535 7.4:-38079615 None:intergenic
TTACCGTTACATAACTACCT+TGG 0.569352 7.4:+38079644 MS.gene055075:CDS
AAAGGGTCATCAGGATTGGT+CGG 0.579181 7.4:+38079837 MS.gene055075:CDS
AGTCGTGCAATAGTACCTAA+AGG 0.584213 7.4:-38078623 None:intergenic
ACAACTTCTGCTTTGACGAA+CGG 0.586924 7.4:+38080005 MS.gene055075:CDS
AGGTACTATTGCACGACTCG+TGG 0.591324 7.4:+38078628 MS.gene055075:CDS
CATCAGGATTGGTCGGAAGG+AGG 0.598473 7.4:+38079844 MS.gene055075:CDS
ATTTCAGGAGGATTTACTAG+AGG 0.604666 7.4:+38079707 MS.gene055075:CDS
CCTAAATCCCCTATTTCAGG+AGG 0.607949 7.4:+38079695 MS.gene055075:CDS
TGAATTGCGCCATAACGCAA+AGG 0.614374 7.4:-38080034 None:intergenic
TTACCAAGGTAGTTATGTAA+CGG 0.643864 7.4:-38079647 None:intergenic
TACTCAAGCCAAGAAACTCG+GGG 0.647198 7.4:+38078762 MS.gene055075:CDS
TATAATAGATAGGATTACCA+AGG 0.651859 7.4:-38079661 None:intergenic
TTTCTTCCACGTCATTAAGG+GGG 0.652161 7.4:-38079817 None:intergenic
AAAGATAAAGTCAGTCAAAG+GGG 0.655613 7.4:-38079264 None:intergenic
CCATACTGCCGGGAAAGAGG+AGG 0.657000 7.4:-38079605 None:intergenic
ATAATGGAAATAGATGACAT+TGG 0.689862 7.4:-38079770 None:intergenic
ACTCAAGCCAAGAAACTCGG+GGG 0.752288 7.4:+38078763 MS.gene055075:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACATATTTATAATAGAT+AGG - chr7.4:38079674-38079693 None:intergenic 15.0%
!! TCTTTCTAAATATGAAATAA+TGG - chr7.4:38079789-38079808 None:intergenic 15.0%
!!! ATTTTGTATACTCAAATTTA+GGG - chr7.4:38078951-38078970 None:intergenic 15.0%
!! CTAAATTTGAGTATACAAAA+TGG + chr7.4:38078950-38078969 MS.gene055075:intron 20.0%
!! TTCATATTTAGAAAGAATGA+AGG + chr7.4:38079793-38079812 MS.gene055075:CDS 20.0%
!!! ATCATGCAAACAATTATTTT+AGG - chr7.4:38079948-38079967 None:intergenic 20.0%
!!! CATTTTGTATACTCAAATTT+AGG - chr7.4:38078952-38078971 None:intergenic 20.0%
!!! TCATGCAAACAATTATTTTA+GGG - chr7.4:38079947-38079966 None:intergenic 20.0%
!!! TTTTGTATACTCAAATTTAG+GGG - chr7.4:38078950-38078969 None:intergenic 20.0%
! AATATGGAAGCAGTAAAATT+TGG + chr7.4:38078662-38078681 MS.gene055075:CDS 25.0%
! ATCTTGACCAACAATATATA+TGG + chr7.4:38078717-38078736 MS.gene055075:CDS 25.0%
! TAAAGATAAAGTCAGTCAAA+GGG - chr7.4:38079268-38079287 None:intergenic 25.0%
! TATAATAGATAGGATTACCA+AGG - chr7.4:38079664-38079683 None:intergenic 25.0%
! TTAAAGATAAAGTCAGTCAA+AGG - chr7.4:38079269-38079288 None:intergenic 25.0%
!! ATAATGGAAATAGATGACAT+TGG - chr7.4:38079773-38079792 None:intergenic 25.0%
!! CAATGTTCAGTTTCATATTT+TGG - chr7.4:38078799-38078818 None:intergenic 25.0%
!! GACTGACTTTATCTTTAAAA+GGG + chr7.4:38079271-38079290 MS.gene055075:CDS 25.0%
!! TGACTGACTTTATCTTTAAA+AGG + chr7.4:38079270-38079289 MS.gene055075:CDS 25.0%
!!! TATACAAAATGGCTTTGTTA+AGG + chr7.4:38078961-38078980 MS.gene055075:intron 25.0%
AAAGATAAAGTCAGTCAAAG+GGG - chr7.4:38079267-38079286 None:intergenic 30.0%
AGTTATGTAACGGTAATATC+TGG - chr7.4:38079640-38079659 None:intergenic 30.0%
CATCAAATCTTGGTATGAAT+AGG + chr7.4:38079205-38079224 MS.gene055075:intron 30.0%
CTCTTTCTTGCTGATATTAA+CGG - chr7.4:38079104-38079123 None:intergenic 30.0%
GAAGAAAGTTGTTTATGTAG+AGG + chr7.4:38078556-38078575 MS.gene055075:CDS 30.0%
TAATCTCTGTCATCAAATCT+TGG + chr7.4:38079195-38079214 MS.gene055075:intron 30.0%
TAGTAAATCCTCCTGAAATA+GGG - chr7.4:38079706-38079725 None:intergenic 30.0%
TCTGACAATAAACATCTATC+CGG - chr7.4:38079560-38079579 None:intergenic 30.0%
TCTGTGACCATATATATTGT+TGG - chr7.4:38078727-38078746 None:intergenic 30.0%
TTACCAAGGTAGTTATGTAA+CGG - chr7.4:38079650-38079669 None:intergenic 30.0%
TTATATCTCGTTCAGAAGTA+TGG + chr7.4:38079046-38079065 MS.gene055075:intron 30.0%
! AAACTTGTTCCATCAACATT+CGG - chr7.4:38079028-38079047 None:intergenic 30.0%
! AATTGTTTGCATGATAATGC+AGG + chr7.4:38079953-38079972 MS.gene055075:intron 30.0%
! ATTGTTTGCATGATAATGCA+GGG + chr7.4:38079954-38079973 MS.gene055075:intron 30.0%
! GATTTTCTTTGTTGAAGCAA+AGG + chr7.4:38079409-38079428 MS.gene055075:CDS 30.0%
! TATTTTCGACTTTGCAATTC+TGG - chr7.4:38078862-38078881 None:intergenic 30.0%
AAAACTCCCATAGATTTCTC+GGG - chr7.4:38079319-38079338 None:intergenic 35.0%
AAAGTTGTTTATGTAGAGGC+TGG + chr7.4:38078560-38078579 MS.gene055075:CDS 35.0%
AAGTTGTTTATGTAGAGGCT+GGG + chr7.4:38078561-38078580 MS.gene055075:CDS 35.0%
AGACAATCCTTCTGATGAAA+TGG + chr7.4:38079352-38079371 MS.gene055075:CDS 35.0%
AGCTTCTTAACATTGCCTTT+AGG + chr7.4:38078608-38078627 MS.gene055075:CDS 35.0%
AGTAAATCCTCCTGAAATAG+GGG - chr7.4:38079705-38079724 None:intergenic 35.0%
ATTTAGACCCGAGAAATCTA+TGG + chr7.4:38079309-38079328 MS.gene055075:CDS 35.0%
ATTTCAGGAGGATTTACTAG+AGG + chr7.4:38079707-38079726 MS.gene055075:CDS 35.0%
CAAAACTCCCATAGATTTCT+CGG - chr7.4:38079320-38079339 None:intergenic 35.0%
CACTGTGTTAAACTTCACTT+TGG + chr7.4:38079872-38079891 MS.gene055075:intron 35.0%
CGTTAATATCAGCAAGAAAG+AGG + chr7.4:38079102-38079121 MS.gene055075:intron 35.0%
CTAGTAAATCCTCCTGAAAT+AGG - chr7.4:38079707-38079726 None:intergenic 35.0%
TCAAATTTAGGGGAACTTCT+CGG - chr7.4:38078940-38078959 None:intergenic 35.0%
TTACCGTTACATAACTACCT+TGG + chr7.4:38079644-38079663 MS.gene055075:CDS 35.0%
TTCACAACCATTTCATCAGA+AGG - chr7.4:38079362-38079381 None:intergenic 35.0%
TTTAGACCCGAGAAATCTAT+GGG + chr7.4:38079310-38079329 MS.gene055075:CDS 35.0%
! ACAGAAGAAGTTTGACTTCA+AGG - chr7.4:38078834-38078853 None:intergenic 35.0%
! CAGAAGAAGTTTGACTTCAA+GGG - chr7.4:38078833-38078852 None:intergenic 35.0%
! TTTCAAGCTTTGCTCTTTTG+TGG - chr7.4:38080085-38080104 None:intergenic 35.0%
!!! AATCTATGGGAGTTTTGGAT+TGG + chr7.4:38079323-38079342 MS.gene055075:CDS 35.0%
AATGTGATGCCGAATGTTGA+TGG + chr7.4:38079016-38079035 MS.gene055075:intron 40.0%
ACAACTTCTGCTTTGACGAA+CGG + chr7.4:38080005-38080024 MS.gene055075:CDS 40.0%
AGTCGTGCAATAGTACCTAA+AGG - chr7.4:38078626-38078645 None:intergenic 40.0%
CAGTGTTACATGTGCTTCAA+GGG + chr7.4:38079480-38079499 MS.gene055075:CDS 40.0%
CCTTAATGACGTGGAAGAAA+GGG + chr7.4:38079820-38079839 MS.gene055075:CDS 40.0%
CCTTTCTTCCACGTCATTAA+GGG - chr7.4:38079822-38079841 None:intergenic 40.0%
CTTTCTTCCACGTCATTAAG+GGG - chr7.4:38079821-38079840 None:intergenic 40.0%
GATCCTAAATCCCCTATTTC+AGG + chr7.4:38079692-38079711 MS.gene055075:CDS 40.0%
TAGAGGTCCAGTAACATTCA+TGG + chr7.4:38079724-38079743 MS.gene055075:CDS 40.0%
TCTGTCACCATGAATGTTAC+TGG - chr7.4:38079734-38079753 None:intergenic 40.0%
TTTCTTCCACGTCATTAAGG+GGG - chr7.4:38079820-38079839 None:intergenic 40.0%
! AGCTTTGCTCTTTTGTGGTT+AGG - chr7.4:38080080-38080099 None:intergenic 40.0%
! AGTTTTCTCACCATTCCCTT+GGG + chr7.4:38079455-38079474 MS.gene055075:CDS 40.0%
! CGAGAAATCTATGGGAGTTT+TGG + chr7.4:38079318-38079337 MS.gene055075:CDS 40.0%
! GAAGTTTGACTTCAAGGGTT+CGG - chr7.4:38078828-38078847 None:intergenic 40.0%
! TAGTTTTCTCACCATTCCCT+TGG + chr7.4:38079454-38079473 MS.gene055075:CDS 40.0%
ATTCATGGTGACAGACGACT+TGG + chr7.4:38079739-38079758 MS.gene055075:CDS 45.0%
CCCTTAATGACGTGGAAGAA+AGG + chr7.4:38079819-38079838 MS.gene055075:CDS 45.0%
CCCTTTCTTCCACGTCATTA+AGG - chr7.4:38079823-38079842 None:intergenic 45.0%
CCTAAATCCCCTATTTCAGG+AGG + chr7.4:38079695-38079714 MS.gene055075:CDS 45.0%
CCTCCTGAAATAGGGGATTT+AGG - chr7.4:38079698-38079717 None:intergenic 45.0%
CGTGGCTAAGGAGTCAAATA+TGG + chr7.4:38078646-38078665 MS.gene055075:CDS 45.0%
CTACTCAAGCCAAGAAACTC+GGG + chr7.4:38078761-38078780 MS.gene055075:CDS 45.0%
GAAGAAAGGGTCATCAGGAT+TGG + chr7.4:38079833-38079852 MS.gene055075:CDS 45.0%
GCAGTGTTACATGTGCTTCA+AGG + chr7.4:38079479-38079498 MS.gene055075:CDS 45.0%
GCTACTCAAGCCAAGAAACT+CGG + chr7.4:38078760-38078779 MS.gene055075:CDS 45.0%
GGTTCCTAATTCCATACTGC+CGG - chr7.4:38079619-38079638 None:intergenic 45.0%
GTTCCTAATTCCATACTGCC+GGG - chr7.4:38079618-38079637 None:intergenic 45.0%
TAAAAAGCCCCCGAGTTTCT+TGG - chr7.4:38078773-38078792 None:intergenic 45.0%
TACTCAAGCCAAGAAACTCG+GGG + chr7.4:38078762-38078781 MS.gene055075:CDS 45.0%
TGAATTGCGCCATAACGCAA+AGG - chr7.4:38080037-38080056 None:intergenic 45.0%
TGTTTATGTAGAGGCTGGGA+AGG + chr7.4:38078565-38078584 MS.gene055075:CDS 45.0%
TTTCCCGGCAGTATGGAATT+AGG + chr7.4:38079612-38079631 MS.gene055075:CDS 45.0%
! AAAGGGTCATCAGGATTGGT+CGG + chr7.4:38079837-38079856 MS.gene055075:CDS 45.0%
! GTTTTCTCACCATTCCCTTG+GGG + chr7.4:38079456-38079475 MS.gene055075:CDS 45.0%
! TTTTCTCACCATTCCCTTGG+GGG + chr7.4:38079457-38079476 MS.gene055075:CDS 45.0%
!! GTACATGACTTGCTTGAGTC+CGG + chr7.4:38079538-38079557 MS.gene055075:CDS 45.0%
ACATGTAACACTGCCCCCAA+GGG - chr7.4:38079473-38079492 None:intergenic 50.0%
ACGTGGAAGAAAGGGTCATC+AGG + chr7.4:38079828-38079847 MS.gene055075:CDS 50.0%
ACTCAAGCCAAGAAACTCGG+GGG + chr7.4:38078763-38078782 MS.gene055075:CDS 50.0%
AGGGGAACTTCTCGGTTCAA+TGG - chr7.4:38078932-38078951 None:intergenic 50.0%
AGGTACTATTGCACGACTCG+TGG + chr7.4:38078628-38078647 MS.gene055075:CDS 50.0%
ATTCCATACTGCCGGGAAAG+AGG - chr7.4:38079611-38079630 None:intergenic 50.0%
TAACCAGACCTCCTCTTTCC+CGG + chr7.4:38079597-38079616 MS.gene055075:CDS 50.0%
TATTGCACGACTCGTGGCTA+AGG + chr7.4:38078634-38078653 MS.gene055075:CDS 50.0%
CACATGTAACACTGCCCCCA+AGG - chr7.4:38079474-38079493 None:intergenic 55.0%
CGGCCTCAACCTTTGCGTTA+TGG + chr7.4:38080025-38080044 MS.gene055075:CDS 55.0%
GAAGGTCCCCCTTAATGACG+TGG + chr7.4:38079811-38079830 MS.gene055075:CDS 55.0%
GCGCCATAACGCAAAGGTTG+AGG - chr7.4:38080031-38080050 None:intergenic 55.0%
TAACACTGCCCCCAAGGGAA+TGG - chr7.4:38079468-38079487 None:intergenic 55.0%
!! CATCAGGATTGGTCGGAAGG+AGG + chr7.4:38079844-38079863 MS.gene055075:CDS 55.0%
!! GGATTGGTCGGAAGGAGGTA+TGG + chr7.4:38079849-38079868 MS.gene055075:intron 55.0%
!! GGTCATCAGGATTGGTCGGA+AGG + chr7.4:38079841-38079860 MS.gene055075:CDS 55.0%
CCATACTGCCGGGAAAGAGG+AGG - chr7.4:38079608-38079627 None:intergenic 60.0%
CCTCCTCTTTCCCGGCAGTA+TGG + chr7.4:38079605-38079624 MS.gene055075:CDS 60.0%
CTGCCGGGAAAGAGGAGGTC+TGG - chr7.4:38079603-38079622 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 38078539 38080112 38078539 ID=MS.gene055075
chr7.4 mRNA 38078539 38080112 38078539 ID=MS.gene055075.t1;Parent=MS.gene055075
chr7.4 exon 38078539 38078889 38078539 ID=MS.gene055075.t1.exon1;Parent=MS.gene055075.t1
chr7.4 CDS 38078539 38078889 38078539 ID=cds.MS.gene055075.t1;Parent=MS.gene055075.t1
chr7.4 exon 38079227 38079865 38079227 ID=MS.gene055075.t1.exon2;Parent=MS.gene055075.t1
chr7.4 CDS 38079227 38079865 38079227 ID=cds.MS.gene055075.t1;Parent=MS.gene055075.t1
chr7.4 exon 38079975 38080112 38079975 ID=MS.gene055075.t1.exon3;Parent=MS.gene055075.t1
chr7.4 CDS 38079975 38080112 38079975 ID=cds.MS.gene055075.t1;Parent=MS.gene055075.t1
Gene Sequence

>MS.gene055075

ATGGTGGACAAAGAAAGGAAGAAAGTTGTTTATGTAGAGGCTGGGAAGGATTTTGTTGATGTTCTCTTCAGCTTCTTAACATTGCCTTTAGGTACTATTGCACGACTCGTGGCTAAGGAGTCAAATATGGAAGCAGTAAAATTTGGCAGCATTAGCTCACTCTATCAAAGTGTTTCAGATCTTGACCAACAATATATATGGTCACAGACATGCAAAGAAATGCTACTCAAGCCAAGAAACTCGGGGGCTTTTTATATCCAAAATATGAAACTGAACATTGATGACACCGAACCCTTGAAGTCAAACTTCTTCTGTGAGAACCAGAATTGCAAAGTCGAAAATAAGTGCTGTGTGAGTTTCTACAGAAATCAAACATGTATTTGTCGAAAGCCATTGAACCGAGAAGTTCCCCTAAATTTGAGTATACAAAATGGCTTTGTTAAGGAAAATTTGACTTTTATTGTTTCTGACGATCTTAATGTGATGCCGAATGTTGATGGAACAAGTTTATATCTCGTTCAGAAGTATGGAATCAATGACATTGATGCTATTGATATACAAACCGTTAATATCAGCAAGAAAGAGGCATGTTTTCTATGTTTATATGTCATCTTTTCTGTTTATAGTAACTATTTTGTTTTCTGTCATTAATTCTCTAATCTCTGTCATCAAATCTTGGTATGAATAGGTAGTAGATATTCTCAAGTTGATTTTGATATCAAAGACCCCTTTGACTGACTTTATCTTTAAAAGGGAGCAATCTGTTGTTAATTTAGACCCGAGAAATCTATGGGAGTTTTGGATTGGAGATGTAGACAATCCTTCTGATGAAATGGTTGTGAAAGTATTAAGAAGAAAATCAACTGCACAGATTTTCTTTGTTGAAGCAAAGGAAGATTTTGCTGACTTTGTCTTTAGTTTTCTCACCATTCCCTTGGGGGCAGTGTTACATGTGCTTCAAGGGTTCTCTTTTTTAAGCTGCATTGATAATTTATATAAGTACATGACTTGCTTGAGTCCGGATAGATGTTTATTGTCAGAAGAAGTCAAAGATAAACTAACCAGACCTCCTCTTTCCCGGCAGTATGGAATTAGGAACCAGATATTACCGTTACATAACTACCTTGGTAATCCTATCTATTATAAATATGTTGATCCTAAATCCCCTATTTCAGGAGGATTTACTAGAGGTCCAGTAACATTCATGGTGACAGACGACTTGGTTGTGACACCAATGTCATCTATTTCCATTATTTCATATTTAGAAAGAATGAAGGTCCCCCTTAATGACGTGGAAGAAAGGGTCATCAGGATTGGTCGGAAGGAGGTATGGCACTGTGTTAAACTTCACTTTGGAAGAAACACTTACTGCATAATTACATCTTAATATTACTTGTATACGATTCCCTAAAATAATTGTTTGCATGATAATGCAGGGTCTCAGCATATTAAAAGCTTCATTGACGACAACTTCTGCTTTGACGAACGGCCTCAACCTTTGCGTTATGGCGCAATTCATGAATGAAAAAAGATCTCAGCCTAACCACAAAAGAGCAAAGCTTGAAAGAACATAA
Protein sequence

>MS.gene055075.t1

MVDKERKKVVYVEAGKDFVDVLFSFLTLPLGTIARLVAKESNMEAVKFGSISSLYQSVSDLDQQYIWSQTCKEMLLKPRNSGAFYIQNMKLNIDDTEPLKSNFFCENQNCKVENKCCVVDILKLILISKTPLTDFIFKREQSVVNLDPRNLWEFWIGDVDNPSDEMVVKVLRRKSTAQIFFVEAKEDFADFVFSFLTIPLGAVLHVLQGFSFLSCIDNLYKYMTCLSPDRCLLSEEVKDKLTRPPLSRQYGIRNQILPLHNYLGNPIYYKYVDPKSPISGGFTRGPVTFMVTDDLVVTPMSSISIISYLERMKVPLNDVEERVIRIGRKEGLSILKASLTTTSALTNGLNLCVMAQFMNEKRSQPNHKRAKLERT