AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94764

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94764.t1 MTR_7g066260 60.606 495 131 9 10 445 3 492 0.0 546
MS.gene94764.t1 MTR_7g066360 56.442 489 149 8 9 444 1 478 7.10e-159 458
MS.gene94764.t1 MTR_7g066340 52.381 483 173 8 12 445 2 476 3.41e-154 446
MS.gene94764.t1 MTR_7g066290 54.957 464 134 6 10 431 3 433 2.33e-151 437
MS.gene94764.t1 MTR_7g066570 53.909 486 155 11 9 431 1 480 6.59e-150 438
MS.gene94764.t1 MTR_7g012680 54.066 455 167 10 9 431 1 445 2.81e-142 414
MS.gene94764.t1 MTR_7g066350 53.333 450 161 9 18 427 5 445 5.92e-141 411
MS.gene94764.t1 MTR_1g041315 49.890 455 176 6 9 415 1 451 2.14e-134 396
MS.gene94764.t1 MTR_7g066310 50.225 444 163 8 19 445 4 406 6.04e-130 381
MS.gene94764.t1 MTR_7g058710 48.089 497 168 12 9 433 1 479 5.27e-126 374
MS.gene94764.t1 MTR_7g066400 48.172 465 159 12 12 427 2 433 4.39e-125 370
MS.gene94764.t1 MTR_7g066580 49.889 451 169 13 28 431 1 441 1.09e-122 364
MS.gene94764.t1 MTR_1g014060 48.333 420 150 12 33 431 11 384 3.75e-109 328
MS.gene94764.t1 MTR_2g029400 43.973 448 173 9 9 421 1 405 5.05e-104 315
MS.gene94764.t1 MTR_7g066430 39.800 500 223 10 20 444 2 498 8.43e-101 310
MS.gene94764.t1 MTR_7g058700 46.120 451 126 12 36 431 533 921 7.94e-99 316
MS.gene94764.t1 MTR_7g066410 38.569 503 214 11 23 431 11 512 4.55e-95 296
MS.gene94764.t1 MTR_7g066480 41.124 445 192 7 20 431 14 421 3.66e-91 283
MS.gene94764.t1 MTR_7g066490 41.244 434 189 8 22 431 16 407 3.04e-88 275
MS.gene94764.t1 MTR_7g062300 39.130 483 216 11 12 429 2 471 9.13e-88 275
MS.gene94764.t1 MTR_7g062280 37.647 510 217 11 16 445 4 492 2.03e-87 275
MS.gene94764.t1 MTR_7g066280 43.026 423 153 11 101 445 1 413 5.97e-87 271
MS.gene94764.t1 MTR_7g063660 37.449 486 219 10 17 433 4 473 1.59e-85 270
MS.gene94764.t1 MTR_7g063830 38.544 467 212 11 16 435 4 442 4.21e-83 263
MS.gene94764.t1 MTR_7g063920 37.705 488 202 8 9 445 1 437 9.01e-83 261
MS.gene94764.t1 MTR_7g063900 39.630 487 199 11 22 429 10 480 1.66e-80 257
MS.gene94764.t1 MTR_7g063820 39.000 500 218 13 16 445 3 485 4.82e-80 256
MS.gene94764.t1 MTR_7g063840 38.182 495 219 15 14 445 4 474 2.43e-79 254
MS.gene94764.t1 MTR_7g063880 38.462 494 201 16 9 431 1 462 1.38e-78 252
MS.gene94764.t1 MTR_3g007740 40.086 464 196 14 21 431 8 442 6.49e-77 246
MS.gene94764.t1 MTR_4g019310 34.496 516 231 15 16 444 2 497 8.53e-76 245
MS.gene94764.t1 MTR_7g063670 38.178 461 204 11 23 429 16 449 1.60e-74 241
MS.gene94764.t1 MTR_7g063890 38.289 491 209 13 21 433 26 500 6.47e-69 228
MS.gene94764.t1 MTR_7g066680 45.333 300 102 6 189 428 38 335 6.63e-63 207
MS.gene94764.t1 MTR_3g065200 35.111 450 195 14 22 418 3 408 1.03e-61 207
MS.gene94764.t1 MTR_4g017440 32.563 519 243 16 9 434 1 505 1.31e-60 206
MS.gene94764.t1 MTR_4g017830 31.041 509 251 15 12 430 2 500 9.78e-60 204
MS.gene94764.t1 MTR_4g019340 32.636 478 226 14 23 419 39 501 9.86e-59 201
MS.gene94764.t1 MTR_4g019340 32.787 122 62 3 22 130 303 417 7.94e-11 64.3
MS.gene94764.t1 MTR_4g017410 31.423 506 262 17 16 444 3 500 5.36e-57 196
MS.gene94764.t1 MTR_4g017610 31.579 494 243 17 11 428 2 476 5.76e-56 192
MS.gene94764.t1 MTR_7g066390 57.237 152 35 1 280 431 1 122 3.39e-46 157
MS.gene94764.t1 MTR_4g017550 30.687 466 226 18 49 429 18 471 2.89e-45 164
MS.gene94764.t1 MTR_4g017550 30.568 229 119 8 3 209 233 443 1.47e-12 69.7
MS.gene94764.t1 MTR_4g017470 29.184 490 262 15 12 434 2 473 1.19e-44 162
MS.gene94764.t1 MTR_7g063720 41.294 201 107 3 242 431 26 226 8.93e-40 143
MS.gene94764.t1 MTR_7g063720 27.907 215 122 8 3 211 8 195 1.28e-12 67.8
MS.gene94764.t1 MTR_7g062270 42.703 185 87 6 13 186 2 178 3.21e-31 124
MS.gene94764.t1 MTR_2g067310 45.161 155 50 4 33 187 58 177 2.31e-29 115
MS.gene94764.t1 MTR_7g100420 33.929 280 144 8 189 438 135 403 2.14e-27 113
MS.gene94764.t1 MTR_7g100420 59.322 59 20 1 23 77 40 98 3.80e-12 68.2
MS.gene94764.t1 MTR_8g023240 27.312 465 253 14 23 423 38 481 2.44e-24 106
MS.gene94764.t1 MTR_7g063690 30.345 290 102 7 9 266 1 222 1.56e-22 96.3
MS.gene94764.t1 MTR_7g063850 31.050 219 117 4 242 431 69 282 2.89e-22 96.7
MS.gene94764.t1 MTR_8g445860 27.273 231 132 7 228 424 3 231 2.38e-17 81.6
MS.gene94764.t1 MTR_8g445860 28.216 241 123 8 14 211 5 238 1.43e-16 79.3
MS.gene94764.t1 MTR_1g115440 29.339 242 122 5 13 210 2 238 2.69e-17 81.3
MS.gene94764.t1 MTR_4g019330 32.653 196 89 6 253 444 32 188 8.89e-17 78.6
MS.gene94764.t1 MTR_4g019240 39.823 113 58 4 18 122 9 119 1.70e-16 77.8
MS.gene94764.t1 MTR_0150s0010 26.971 241 123 5 16 210 4 237 1.46e-14 73.6
MS.gene94764.t1 MTR_1g115450 32.558 129 74 3 17 140 2 122 4.68e-14 69.7
MS.gene94764.t1 MTR_7g063760 52.381 63 29 1 368 429 3 65 1.07e-13 66.6
MS.gene94764.t1 MTR_0150s0030 38.750 80 44 1 16 95 2 76 4.17e-13 68.6
MS.gene94764.t1 MTR_1g115455 39.560 91 50 1 16 106 3 88 5.41e-13 68.9
MS.gene94764.t1 MTR_8g445920 38.824 85 47 1 16 100 4 83 6.82e-13 65.5
MS.gene94764.t1 MTR_8g044890 38.824 85 47 1 16 100 4 83 6.82e-13 65.5
MS.gene94764.t1 MTR_8g445910 40.000 80 43 1 16 95 2 76 3.50e-12 67.0
MS.gene94764.t1 MTR_8g044880 40.000 80 43 1 16 95 2 76 4.36e-12 67.0
MS.gene94764.t1 MTR_7g063870 56.364 55 24 0 16 70 25 79 6.58e-12 65.9
MS.gene94764.t1 MTR_1g115470 37.113 97 54 2 22 116 6 97 2.39e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94764.t1 AT5G01130 30.608 477 256 13 15 444 3 451 6.26e-47 168
MS.gene94764.t1 AT5G01150 30.060 499 265 12 15 444 3 486 1.27e-46 168
MS.gene94764.t1 AT5G01120 29.058 499 276 11 23 444 10 507 1.37e-45 166
MS.gene94764.t1 AT3G09140 29.697 495 263 15 17 431 4 493 2.35e-43 159
MS.gene94764.t1 AT5G43240 29.608 510 263 15 23 444 10 511 3.26e-39 148
MS.gene94764.t1 AT5G43240 29.608 510 263 15 23 444 10 511 3.26e-39 148
MS.gene94764.t1 AT5G43240 29.608 510 263 15 23 444 10 511 3.26e-39 148
MS.gene94764.t1 AT3G09140 28.731 536 263 18 17 444 4 528 3.66e-39 148
MS.gene94764.t1 AT5G01140 28.131 487 262 12 15 444 3 458 2.16e-37 142
MS.gene94764.t1 AT3G09110 30.745 322 176 6 22 304 9 322 1.21e-36 137
MS.gene94764.t1 AT3G09120 32.704 318 158 12 19 290 3 310 5.87e-32 124
MS.gene94764.t1 AT5G37320 27.430 463 261 14 33 427 20 475 5.79e-31 124

Find 72 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATTGAAGCAGTGAAATT+TGG 0.215494 7.1:+35756824 MS.gene94764:CDS
AAGAGTGCCATTAACAATTA+TGG 0.233920 7.1:+35757877 MS.gene94764:CDS
GATCCTAAATCCTCTCTTTC+GGG 0.240762 7.1:+35757845 MS.gene94764:CDS
GAGGAAATTGTCGTTGATAT+TGG 0.290428 7.1:+35757986 MS.gene94764:CDS
AAATCTTTGACCACAGATAT+TGG 0.298129 7.1:-35756889 None:intergenic
TGATCCTAAATCCTCTCTTT+CGG 0.322652 7.1:+35757844 MS.gene94764:CDS
GATTTGTTTCTTGATGAAAA+TGG 0.322690 7.1:+35757097 MS.gene94764:CDS
GTGTCTTTGTGGACGGTTTA+CGG 0.348361 7.1:+35757051 MS.gene94764:CDS
CAAAGTTAGCTTGAAAGTTA+TGG 0.360081 7.1:+35756682 MS.gene94764:CDS
CCTCCCGAAAGAGAGGATTT+AGG 0.363934 7.1:-35757848 None:intergenic
ATTTCCTCTATGTCATTTAG+AGG 0.364076 7.1:-35757971 None:intergenic
TCCGTAACCATAATTGTTAA+TGG 0.379272 7.1:-35757884 None:intergenic
AGTTTCTTAACATTGCCTTT+AGG 0.383949 7.1:+35756770 MS.gene94764:CDS
TCAACATCTGCTTTGACTAA+TGG 0.392693 7.1:+35758139 MS.gene94764:CDS
TCCACTCGAAACATTCTGTT+TGG 0.394895 7.1:+35757539 MS.gene94764:CDS
GCCATTAACAATTATGGTTA+CGG 0.409007 7.1:+35757883 MS.gene94764:CDS
TAACCTTCCATTGAGTTCCT+TGG 0.415613 7.1:-35756932 None:intergenic
GCTGCGTTTACTCACAAATC+AGG 0.417974 7.1:+35757800 MS.gene94764:CDS
GAAGAGGGTAAGATTGGTAT+TGG 0.419917 7.1:+35757458 MS.gene94764:CDS
ACTCACCTATGTACTGTTTG+AGG 0.434750 7.1:-35758162 None:intergenic
TGCAAATCAATCAAGTGAAC+AGG 0.437476 7.1:+35756655 MS.gene94764:CDS
CCATCTGAAGAGGGTAAGAT+TGG 0.438944 7.1:+35757452 MS.gene94764:CDS
AAGTTATGGTGGACAAAGTA+AGG 0.476932 7.1:+35756696 MS.gene94764:CDS
CAATATTCAGCTTGAGCTTG+TGG 0.489898 7.1:-35756958 None:intergenic
GGTAAGATTGGTATTGGAAA+GGG 0.492219 7.1:+35757464 MS.gene94764:CDS
TCTGACCGCAAGCATCTCTC+AGG 0.492520 7.1:-35757698 None:intergenic
AATATCAATGCAGCTTAAAG+AGG 0.495387 7.1:-35757648 None:intergenic
TGGAATCAGAAGTGTCTTTG+TGG 0.499620 7.1:+35757040 MS.gene94764:CDS
GGAGTGTTGCAAATGCTAGA+AGG 0.519900 7.1:+35757620 MS.gene94764:CDS
TGGTTCCTTACTCCCAATGT+AGG 0.523927 7.1:-35757758 None:intergenic
ATCAGAAGTGTCTTTGTGGA+CGG 0.527393 7.1:+35757044 MS.gene94764:CDS
TCATCAAGAAACAAATCTCT+CGG 0.528729 7.1:-35757091 None:intergenic
AAAGTTGTGTATGCTGAGGC+TGG 0.537208 7.1:+35756722 MS.gene94764:CDS
CGTTGATATTGGAGTGAAGG+AGG 0.544247 7.1:+35757997 MS.gene94764:CDS
TGTCGTTGATATTGGAGTGA+AGG 0.545995 7.1:+35757994 MS.gene94764:CDS
AGTCTTGCAATAGTACCTAA+AGG 0.556108 7.1:-35756785 None:intergenic
GGCTTCTTCAGGTTGCACAT+AGG 0.558224 7.1:-35759046 None:intergenic
ACAGCAACCAAGGAACTCAA+TGG 0.558269 7.1:+35756925 MS.gene94764:CDS
GGGTAAGATTGGTATTGGAA+AGG 0.563253 7.1:+35757463 MS.gene94764:CDS
ATACATCTGTAGTATTTCCT+CGG 0.565957 7.1:-35756989 None:intergenic
TATTGCAAGACTCGTTGCTA+AGG 0.567646 7.1:+35756796 MS.gene94764:CDS
GGTCCCTCTAAATGACATAG+AGG 0.569467 7.1:+35757967 MS.gene94764:CDS
TTTCCTCTATGTCATTTAGA+GGG 0.570470 7.1:-35757970 None:intergenic
TGCAAATCCTCCCGAAAGAG+AGG 0.577572 7.1:-35757855 None:intergenic
GAAACCAACATATGCTGATG+AGG 0.578752 7.1:+35757424 MS.gene94764:CDS
AAGCCCTCATCAGCATATGT+TGG 0.587767 7.1:-35757428 None:intergenic
CAAGAAACAAATCTCTCGGA+CGG 0.592120 7.1:-35757087 None:intergenic
ACTACAGATGTATTCAATGT+GGG 0.593405 7.1:+35756999 MS.gene94764:CDS
CCAATCTTACCCTCTTCAGA+TGG 0.593770 7.1:-35757452 None:intergenic
AGTTAGCTTGAAAGTTATGG+TGG 0.596863 7.1:+35756685 MS.gene94764:CDS
ATCAGCTTATCCTCTTCAGA+TGG 0.598589 7.1:-35757491 None:intergenic
CCTAAATCCTCTCTTTCGGG+AGG 0.609428 7.1:+35757848 MS.gene94764:CDS
AATGGCCTCAAACAGTACAT+AGG 0.613552 7.1:+35758157 MS.gene94764:CDS
TTTAAGATAAAGTCTGTCAG+AGG 0.614107 7.1:-35757398 None:intergenic
AGGAAATGCTACAGCAACCA+AGG 0.618418 7.1:+35756915 MS.gene94764:CDS
ACACTATCAAATGATGACAC+TGG 0.620139 7.1:-35757923 None:intergenic
ACCAAACAGAATGTTTCGAG+TGG 0.623174 7.1:-35757540 None:intergenic
AAAGGGCTTACCATCTGAAG+AGG 0.626078 7.1:+35757481 MS.gene94764:CDS
TTCATATCTAGAGAGAATGA+AGG 0.632183 7.1:+35757946 MS.gene94764:CDS
TGAGGGCTTACCATCTGAAG+AGG 0.633509 7.1:+35757442 MS.gene94764:CDS
AAACCAACATATGCTGATGA+GGG 0.634689 7.1:+35757425 MS.gene94764:CDS
ATCTAGATCACCAATATCTG+TGG 0.636073 7.1:+35756879 MS.gene94764:CDS
TACTACAGATGTATTCAATG+TGG 0.641904 7.1:+35756998 MS.gene94764:CDS
CAACCAAGGAACTCAATGGA+AGG 0.644395 7.1:+35756929 MS.gene94764:CDS
ATTAGTCAAAGCAGATGTTG+AGG 0.644403 7.1:-35758137 None:intergenic
TAGCAGTGCAATCTTTACAA+TGG 0.647841 7.1:+35756625 MS.gene94764:CDS
GAGGGCTTACCATCTGAAGA+GGG 0.663821 7.1:+35757443 MS.gene94764:CDS
GATCATTAGGGATCACACAA+AGG 0.686381 7.1:-35757159 None:intergenic
TCTGTGGTCAAAGATTTGCA+AGG 0.689564 7.1:+35756895 MS.gene94764:CDS
ATTTGCAACACTCCTCCCAG+AGG 0.732067 7.1:-35757611 None:intergenic
TGAATATTGATGACACACCG+AGG 0.765078 7.1:+35756972 MS.gene94764:CDS
TGAGTCCTGAGAGATGCTTG+CGG 0.770790 7.1:+35757693 MS.gene94764:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATATTGATAAGAAATGTA+AGG - chr7.1:35758611-35758630 None:intergenic 15.0%
!! CTTTAATAATCATTTGTACA+TGG - chr7.1:35758715-35758734 None:intergenic 20.0%
!! TTATATATCTGTGTAATGAA+AGG + chr7.1:35758675-35758694 MS.gene94764:intron 20.0%
!! TTTGCATTAATGTAAACAAA+TGG - chr7.1:35758459-35758478 None:intergenic 20.0%
!!! ATAATGTATAAAGTGTTATG+AGG - chr7.1:35758209-35758228 None:intergenic 20.0%
! AACTACATACTACTACTAAT+TGG - chr7.1:35758340-35758359 None:intergenic 25.0%
! AATATTGAAGCAGTGAAATT+TGG + chr7.1:35756824-35756843 MS.gene94764:CDS 25.0%
! ATATCTGTGTTTATATGTGT+AGG + chr7.1:35757337-35757356 MS.gene94764:intron 25.0%
! ATTAGTAGTAGTATGTAGTT+TGG + chr7.1:35758340-35758359 MS.gene94764:intron 25.0%
! CGAGAAATATTAAAAGGAAA+AGG - chr7.1:35758055-35758074 None:intergenic 25.0%
! CTTCTGATTCCAAATAAAAA+TGG - chr7.1:35757032-35757051 None:intergenic 25.0%
! TACCATCTTCACATAAAAAT+TGG + chr7.1:35758409-35758428 MS.gene94764:intron 25.0%
! TATCTAATATCTATTGTGCA+GGG + chr7.1:35758088-35758107 MS.gene94764:intron 25.0%
! TGCAATCGAGAAATATTAAA+AGG - chr7.1:35758061-35758080 None:intergenic 25.0%
! TTATCTAATATCTATTGTGC+AGG + chr7.1:35758087-35758106 MS.gene94764:intron 25.0%
! TTTACATTAATGCAAATCGT+GGG + chr7.1:35758463-35758482 MS.gene94764:intron 25.0%
!! GATTTGTTTCTTGATGAAAA+TGG + chr7.1:35757097-35757116 MS.gene94764:CDS 25.0%
!!! TGATCTTTTTTCCTTAATCA+TGG + chr7.1:35758849-35758868 MS.gene94764:intron 25.0%
!!! TGATGAAAATGGTTTTGTTA+TGG + chr7.1:35757108-35757127 MS.gene94764:CDS 25.0%
AAATCTTTGACCACAGATAT+TGG - chr7.1:35756892-35756911 None:intergenic 30.0%
AAGTAAGTGGTTAACTCATT+CGG - chr7.1:35758384-35758403 None:intergenic 30.0%
AATATCAATGCAGCTTAAAG+AGG - chr7.1:35757651-35757670 None:intergenic 30.0%
ACTACAGATGTATTCAATGT+GGG + chr7.1:35756999-35757018 MS.gene94764:CDS 30.0%
AGCTAGTGTGAAATATATAG+AGG + chr7.1:35758733-35758752 MS.gene94764:intron 30.0%
AGTTTCTTAACATTGCCTTT+AGG + chr7.1:35756770-35756789 MS.gene94764:CDS 30.0%
ATACATCTGTAGTATTTCCT+CGG - chr7.1:35756992-35757011 None:intergenic 30.0%
CAATTCGTGCTTAAAAACAT+TGG + chr7.1:35758493-35758512 MS.gene94764:intron 30.0%
GAATATAGAAGAAGAAGAGT+TGG + chr7.1:35758791-35758810 MS.gene94764:intron 30.0%
GCCATTAACAATTATGGTTA+CGG + chr7.1:35757883-35757902 MS.gene94764:CDS 30.0%
GTTTACATTAATGCAAATCG+TGG + chr7.1:35758462-35758481 MS.gene94764:intron 30.0%
TAAAAATTGGCAAACCAGTA+AGG + chr7.1:35758422-35758441 MS.gene94764:intron 30.0%
TACTACAGATGTATTCAATG+TGG + chr7.1:35756998-35757017 MS.gene94764:CDS 30.0%
TAGTTTGGTCTATTAGCTAA+GGG + chr7.1:35758355-35758374 MS.gene94764:intron 30.0%
TCATCAAGAAACAAATCTCT+CGG - chr7.1:35757094-35757113 None:intergenic 30.0%
TCCGTAACCATAATTGTTAA+TGG - chr7.1:35757887-35757906 None:intergenic 30.0%
TTCACACCATGATTAAATTG+AGG - chr7.1:35758950-35758969 None:intergenic 30.0%
TTCATATCTAGAGAGAATGA+AGG + chr7.1:35757946-35757965 MS.gene94764:CDS 30.0%
! ACAGGTATACTTGATGATTA+AGG - chr7.1:35758985-35759004 None:intergenic 30.0%
! AGCAAATGTAGACTTTTAAC+TGG - chr7.1:35757184-35757203 None:intergenic 30.0%
! ATTTCCTCTATGTCATTTAG+AGG - chr7.1:35757974-35757993 None:intergenic 30.0%
! CAAAGTTAGCTTGAAAGTTA+TGG + chr7.1:35756682-35756701 MS.gene94764:CDS 30.0%
! TACTCACAAATCAGGTTTTA+AGG + chr7.1:35757808-35757827 MS.gene94764:CDS 30.0%
! TGCCAATTTTTATGTGAAGA+TGG - chr7.1:35758414-35758433 None:intergenic 30.0%
! TTTAAGATAAAGTCTGTCAG+AGG - chr7.1:35757401-35757420 None:intergenic 30.0%
! TTTCCTCTATGTCATTTAGA+GGG - chr7.1:35757973-35757992 None:intergenic 30.0%
!! AAGAGTGCCATTAACAATTA+TGG + chr7.1:35757877-35757896 MS.gene94764:CDS 30.0%
!! AGACTTTTAACTGGATCATT+AGG - chr7.1:35757175-35757194 None:intergenic 30.0%
!! GACTTTTAACTGGATCATTA+GGG - chr7.1:35757174-35757193 None:intergenic 30.0%
!! GGAGATTGACCATTTTTATT+TGG + chr7.1:35757020-35757039 MS.gene94764:CDS 30.0%
!!! AAGTGTTATGAGGTTTTGTT+TGG - chr7.1:35758199-35758218 None:intergenic 30.0%
!!! CTGTTTTGATTGGTAATATC+TGG - chr7.1:35757781-35757800 None:intergenic 30.0%
AAACCAACATATGCTGATGA+GGG + chr7.1:35757425-35757444 MS.gene94764:CDS 35.0%
AAGAAGAAGAGTTGGAAGAA+AGG + chr7.1:35758799-35758818 MS.gene94764:intron 35.0%
ACACTATCAAATGATGACAC+TGG - chr7.1:35757926-35757945 None:intergenic 35.0%
AGATGGTAGTAGTAAGTAAG+TGG - chr7.1:35758397-35758416 None:intergenic 35.0%
AGTCTTGCAATAGTACCTAA+AGG - chr7.1:35756788-35756807 None:intergenic 35.0%
AGTTTGGTCTATTAGCTAAG+GGG + chr7.1:35758356-35758375 MS.gene94764:intron 35.0%
ATCTAGATCACCAATATCTG+TGG + chr7.1:35756879-35756898 MS.gene94764:CDS 35.0%
ATTAGTCAAAGCAGATGTTG+AGG - chr7.1:35758140-35758159 None:intergenic 35.0%
CATACTACTACTAATTGGAC+AGG - chr7.1:35758335-35758354 None:intergenic 35.0%
CTACATTTGCTTCAGATGAA+TGG + chr7.1:35757193-35757212 MS.gene94764:intron 35.0%
GAAAAAAGTTGTGTATGCTG+AGG + chr7.1:35756718-35756737 MS.gene94764:CDS 35.0%
GAAACAAGTCACCATGATTA+AGG - chr7.1:35758863-35758882 None:intergenic 35.0%
GACAACAAATTAGACAGAAC+AGG - chr7.1:35759003-35759022 None:intergenic 35.0%
GACAGTTAATGTTGACAAGA+TGG + chr7.1:35758755-35758774 MS.gene94764:intron 35.0%
GAGAGAAAAACGCTACTTAT+CGG + chr7.1:35757238-35757257 MS.gene94764:intron 35.0%
GAGGAAATTGTCGTTGATAT+TGG + chr7.1:35757986-35758005 MS.gene94764:CDS 35.0%
GTAGTTTGGTCTATTAGCTA+AGG + chr7.1:35758354-35758373 MS.gene94764:intron 35.0%
GTGCAACCTCAATTTAATCA+TGG + chr7.1:35758941-35758960 MS.gene94764:intron 35.0%
TAGCAGTGCAATCTTTACAA+TGG + chr7.1:35756625-35756644 MS.gene94764:CDS 35.0%
TCAACATCTGCTTTGACTAA+TGG + chr7.1:35758139-35758158 MS.gene94764:CDS 35.0%
TGATCCTAAATCCTCTCTTT+CGG + chr7.1:35757844-35757863 MS.gene94764:CDS 35.0%
TGCAAATCAATCAAGTGAAC+AGG + chr7.1:35756655-35756674 MS.gene94764:CDS 35.0%
TGGTTAATTCTGATCCTTAC+TGG - chr7.1:35758439-35758458 None:intergenic 35.0%
! AGTTAGCTTGAAAGTTATGG+TGG + chr7.1:35756685-35756704 MS.gene94764:CDS 35.0%
! CCTCGAATTTTTCCTACATT+GGG + chr7.1:35757746-35757765 MS.gene94764:CDS 35.0%
! GGTAAGATTGGTATTGGAAA+GGG + chr7.1:35757464-35757483 MS.gene94764:CDS 35.0%
! TATAGCTGACGAAGATTTTG+CGG + chr7.1:35757562-35757581 MS.gene94764:CDS 35.0%
! TTTTTCCTACATTGGGAGTA+AGG + chr7.1:35757753-35757772 MS.gene94764:CDS 35.0%
!! AAGTTATGGTGGACAAAGTA+AGG + chr7.1:35756696-35756715 MS.gene94764:CDS 35.0%
!! AGTTTTCTCACTTTTCCTCT+GGG + chr7.1:35757596-35757615 MS.gene94764:CDS 35.0%
!! GTTTTTAAGCACGAATTGAG+TGG - chr7.1:35758491-35758510 None:intergenic 35.0%
!!! TTTCTTCTTTTGGCTTCTTC+AGG - chr7.1:35759060-35759079 None:intergenic 35.0%
AATGGCCTCAAACAGTACAT+AGG + chr7.1:35758157-35758176 MS.gene94764:CDS 40.0%
ACCAAACAGAATGTTTCGAG+TGG - chr7.1:35757543-35757562 None:intergenic 40.0%
ACTCACCTATGTACTGTTTG+AGG - chr7.1:35758165-35758184 None:intergenic 40.0%
ATCAGCTTATCCTCTTCAGA+TGG - chr7.1:35757494-35757513 None:intergenic 40.0%
ATTGGAGTGAAGGAGGTAAA+GGG + chr7.1:35758004-35758023 MS.gene94764:intron 40.0%
CAAGAAACAAATCTCTCGGA+CGG - chr7.1:35757090-35757109 None:intergenic 40.0%
CAATATTCAGCTTGAGCTTG+TGG - chr7.1:35756961-35756980 None:intergenic 40.0%
CACATAGGATCATCTGTCAA+AGG - chr7.1:35759034-35759053 None:intergenic 40.0%
CCCAATGTAGGAAAAATTCG+AGG - chr7.1:35757749-35757768 None:intergenic 40.0%
GAAACCAACATATGCTGATG+AGG + chr7.1:35757424-35757443 MS.gene94764:CDS 40.0%
GAAGAGGGTAAGATTGGTAT+TGG + chr7.1:35757458-35757477 MS.gene94764:CDS 40.0%
GATCATTAGGGATCACACAA+AGG - chr7.1:35757162-35757181 None:intergenic 40.0%
GATCCTAAATCCTCTCTTTC+GGG + chr7.1:35757845-35757864 MS.gene94764:CDS 40.0%
TAACCTTCCATTGAGTTCCT+TGG - chr7.1:35756935-35756954 None:intergenic 40.0%
TATTGCAAGACTCGTTGCTA+AGG + chr7.1:35756796-35756815 MS.gene94764:CDS 40.0%
TATTGGAGTGAAGGAGGTAA+AGG + chr7.1:35758003-35758022 MS.gene94764:intron 40.0%
TCCACTCGAAACATTCTGTT+TGG + chr7.1:35757539-35757558 MS.gene94764:CDS 40.0%
TCTGTGGTCAAAGATTTGCA+AGG + chr7.1:35756895-35756914 MS.gene94764:CDS 40.0%
TGTCGTTGATATTGGAGTGA+AGG + chr7.1:35757994-35758013 MS.gene94764:CDS 40.0%
! GCCTCGAATTTTTCCTACAT+TGG + chr7.1:35757745-35757764 MS.gene94764:CDS 40.0%
! GGGTAAGATTGGTATTGGAA+AGG + chr7.1:35757463-35757482 MS.gene94764:CDS 40.0%
! TGAATATTGATGACACACCG+AGG + chr7.1:35756972-35756991 MS.gene94764:CDS 40.0%
!! ATCAGAAGTGTCTTTGTGGA+CGG + chr7.1:35757044-35757063 MS.gene94764:CDS 40.0%
!! CAGTTTTCTCACTTTTCCTC+TGG + chr7.1:35757595-35757614 MS.gene94764:CDS 40.0%
!! TGGAATCAGAAGTGTCTTTG+TGG + chr7.1:35757040-35757059 MS.gene94764:CDS 40.0%
!!! GTAAACGCAGCTGTTTTGAT+TGG - chr7.1:35757791-35757810 None:intergenic 40.0%
AAAGGGCTTACCATCTGAAG+AGG + chr7.1:35757481-35757500 MS.gene94764:CDS 45.0%
AAAGTTGTGTATGCTGAGGC+TGG + chr7.1:35756722-35756741 MS.gene94764:CDS 45.0%
AACGCTACTTATCGGCAAGA+AGG + chr7.1:35757246-35757265 MS.gene94764:intron 45.0%
AAGCCCTCATCAGCATATGT+TGG - chr7.1:35757431-35757450 None:intergenic 45.0%
ACAGCAACCAAGGAACTCAA+TGG + chr7.1:35756925-35756944 MS.gene94764:CDS 45.0%
AGGAAATGCTACAGCAACCA+AGG + chr7.1:35756915-35756934 MS.gene94764:CDS 45.0%
CAACCAAGGAACTCAATGGA+AGG + chr7.1:35756929-35756948 MS.gene94764:CDS 45.0%
CCAATCTTACCCTCTTCAGA+TGG - chr7.1:35757455-35757474 None:intergenic 45.0%
CCATCTGAAGAGGGTAAGAT+TGG + chr7.1:35757452-35757471 MS.gene94764:CDS 45.0%
CGTTGATATTGGAGTGAAGG+AGG + chr7.1:35757997-35758016 MS.gene94764:CDS 45.0%
GCTGCGTTTACTCACAAATC+AGG + chr7.1:35757800-35757819 MS.gene94764:CDS 45.0%
GGTCCCTCTAAATGACATAG+AGG + chr7.1:35757967-35757986 MS.gene94764:CDS 45.0%
GTGTCTTTGTGGACGGTTTA+CGG + chr7.1:35757051-35757070 MS.gene94764:CDS 45.0%
TGGTTCCTTACTCCCAATGT+AGG - chr7.1:35757761-35757780 None:intergenic 45.0%
!! GGAGTGTTGCAAATGCTAGA+AGG + chr7.1:35757620-35757639 MS.gene94764:CDS 45.0%
!! TTTCTCACTTTTCCTCTGGG+AGG + chr7.1:35757599-35757618 MS.gene94764:CDS 45.0%
ATTTGCAACACTCCTCCCAG+AGG - chr7.1:35757614-35757633 None:intergenic 50.0%
CCTAAATCCTCTCTTTCGGG+AGG + chr7.1:35757848-35757867 MS.gene94764:CDS 50.0%
CCTCCCGAAAGAGAGGATTT+AGG - chr7.1:35757851-35757870 None:intergenic 50.0%
GAGGGCTTACCATCTGAAGA+GGG + chr7.1:35757443-35757462 MS.gene94764:CDS 50.0%
GCTACTTATCGGCAAGAAGG+AGG + chr7.1:35757249-35757268 MS.gene94764:intron 50.0%
TGAGGGCTTACCATCTGAAG+AGG + chr7.1:35757442-35757461 MS.gene94764:CDS 50.0%
TGAGTCCTGAGAGATGCTTG+CGG + chr7.1:35757693-35757712 MS.gene94764:CDS 50.0%
TGCAAATCCTCCCGAAAGAG+AGG - chr7.1:35757858-35757877 None:intergenic 50.0%
!! GGCTTCTTCAGGTTGCACAT+AGG - chr7.1:35759049-35759068 None:intergenic 50.0%
TCTGACCGCAAGCATCTCTC+AGG - chr7.1:35757701-35757720 None:intergenic 55.0%
!!! CAGAGGCGTTTTCGAGAGCA+AGG - chr7.1:35757384-35757403 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 35756620 35759084 35756620 ID=MS.gene94764
chr7.1 mRNA 35756620 35759084 35756620 ID=MS.gene94764.t1;Parent=MS.gene94764
chr7.1 exon 35756620 35757183 35756620 ID=MS.gene94764.t1.exon1;Parent=MS.gene94764.t1
chr7.1 CDS 35756620 35757183 35756620 ID=cds.MS.gene94764.t1;Parent=MS.gene94764.t1
chr7.1 exon 35757359 35758018 35757359 ID=MS.gene94764.t1.exon2;Parent=MS.gene94764.t1
chr7.1 CDS 35757359 35758018 35757359 ID=cds.MS.gene94764.t1;Parent=MS.gene94764.t1
chr7.1 exon 35758109 35758178 35758109 ID=MS.gene94764.t1.exon3;Parent=MS.gene94764.t1
chr7.1 CDS 35758109 35758178 35758109 ID=cds.MS.gene94764.t1;Parent=MS.gene94764.t1
chr7.1 exon 35759041 35759084 35759041 ID=MS.gene94764.t1.exon4;Parent=MS.gene94764.t1
chr7.1 CDS 35759041 35759084 35759041 ID=cds.MS.gene94764.t1;Parent=MS.gene94764.t1
Gene Sequence

>MS.gene94764

ATGGCTAGCAGTGCAATCTTTACAATGGCTAGCAGTGCAAATCAATCAAGTGAACAGGCTGACAAAGTTAGCTTGAAAGTTATGGTGGACAAAGTAAGGAAAAAAGTTGTGTATGCTGAGGCTGGAAAAGATTTTGTTGATGTTCTTTTCAGTTTCTTAACATTGCCTTTAGGTACTATTGCAAGACTCGTTGCTAAGGACTCAAATATTGAAGCAGTGAAATTTGGCAGCATTAGCTCACTGTATCAAAGTGTGACAGATCTAGATCACCAATATCTGTGGTCAAAGATTTGCAAGGAAATGCTACAGCAACCAAGGAACTCAATGGAAGGTTACTGCCACAAGCTCAAGCTGAATATTGATGACACACCGAGGAAATACTACAGATGTATTCAATGTGGGAGATTGACCATTTTTATTTGGAATCAGAAGTGTCTTTGTGGACGGTTTACGGAAACAGAAGATATCCGTCCGAGAGATTTGTTTCTTGATGAAAATGGTTTTGTTATGGAAACTGCTTCTTTTATAATTCATGACAACCTTTGTGTGATCCCTAATGATCCAGTTAAAAGTCTACATTTGCTTCAGATGAATGGAATCAATGACATAGCAGATATCGAGAGAAAAACGCTACTTATCGGCAAGAAGGAGGCATGATTTTTTGAATTTTCTTGATATTTATATCGTTATCATTTCTGTTGATTTTATTTTAAATGAATATCTGTGTTTATATGTGTAGGTTGTTGATCTTCTCAAGTTGTCCTTGCTCTCGAAAACGCCTCTGACAGACTTTATCTTAAAGAAGAAACCAACATATGCTGATGAGGGCTTACCATCTGAAGAGGGTAAGATTGGTATTGGAAAGGGCTTACCATCTGAAGAGGATAAGCTGATGCTGATGAAACTACTAGTTAGAAAATCCACTCGAAACATTCTGTTTGGTATAGCTGACGAAGATTTTGCGGACTTACTTTTCAGTTTTCTCACTTTTCCTCTGGGAGGAGTGTTGCAAATGCTAGAAGGATTCTCCTCTTTAAGCTGCATTGATATTTTATATAAAAGCATGACTGAGTTGAGTCCTGAGAGATGCTTGCGGTCAGATGAACTTAAAAACAAACTAAGTAAGCCTCGAATTTTTCCTACATTGGGAGTAAGGAACCAGATATTACCAATCAAAACAGCTGCGTTTACTCACAAATCAGGTTTTAAGGTCTTTGAAATTATTGATCCTAAATCCTCTCTTTCGGGAGGATTTGCAAGAGTGCCATTAACAATTATGGTTACGGATGACTTGCTTGTGACTCCAGTGTCATCATTTGATAGTGTTTCATATCTAGAGAGAATGAAGGTCCCTCTAAATGACATAGAGGAAATTGTCGTTGATATTGGAGTGAAGGAGGTAAAGGGAGTGTGTGAGACTTCATTTAGCATACCTTTTCCTTTTAATATTTCTCGATTGCATAATTTTTATCTAATATCTATTGTGCAGGGTCTGAGCATACTAAAAGCTTCATTGACCTCAACATCTGCTTTGACTAATGGCCTCAAACAGTACATAGGTGAGTAAAATGTTCAACCAAACAAAACCTCATAACACTTTATACATTATAATTAATACAAAAACAATATTAAGCTCGTGCAGAACTTTTTTTAATTTTATCTTTAGATTTTTACTGAATGTGACTCTATTCAAAAGTCATATGTGAAATACTCCTGTCCAATTAGTAGTAGTATGTAGTTTGGTCTATTAGCTAAGGGGATCCGAATGAGTTAACCACTTACTTACTACTACCATCTTCACATAAAAATTGGCAAACCAGTAAGGATCAGAATTAACCATTTGTTTACATTAATGCAAATCGTGGGTTCCACTCAATTCGTGCTTAAAAACATTGGATTTTGTTTTATAACATTTAAGAGTAATTTCGAATCTTTGATTATCTTTTGTTAATTTTTCTGTAACATATTCTGAATTAAAGCAATGATTTCCTTACATTTCTTATCAATATTATTTCTTATAACATGATTAGTATCTTACTTGTTATAAGTAGTACTTTATATATCTGTGTAATGAAAGGTAATCGTATATATGCCATGTACAAATGATTATTAAAGCTAGTGTGAAATATATAGAGGACAGTTAATGTTGACAAGATGGAGTAACTAAAAACGAATATAGAAGAAGAAGAGTTGGAAGAAAGGTTGAAATATAAGAAGAGAAGAGAGAAATGATCTTTTTTCCTTAATCATGGTGACTTGTTTCTTGTTAACAATTTTGATTTGCTACTCAATACTAAATTTACACAATTTTATGTGCGTATGTGCAACCTCAATTTAATCATGGTGTGAAATGATCTTTTTTCCTTAATCATCAAGTATACCTGTTCTGTCTAATTTGTTGTCTAATGCATCCTTTGACAGATGATCCTATGTGCAACCTGAAGAAGCCAAAAGAAGAAAAATGA
Protein sequence

>MS.gene94764.t1

MASSAIFTMASSANQSSEQADKVSLKVMVDKVRKKVVYAEAGKDFVDVLFSFLTLPLGTIARLVAKDSNIEAVKFGSISSLYQSVTDLDHQYLWSKICKEMLQQPRNSMEGYCHKLKLNIDDTPRKYYRCIQCGRLTIFIWNQKCLCGRFTETEDIRPRDLFLDENGFVMETASFIIHDNLCVIPNDPVVDLLKLSLLSKTPLTDFILKKKPTYADEGLPSEEGKIGIGKGLPSEEDKLMLMKLLVRKSTRNILFGIADEDFADLLFSFLTFPLGGVLQMLEGFSSLSCIDILYKSMTELSPERCLRSDELKNKLSKPRIFPTLGVRNQILPIKTAAFTHKSGFKVFEIIDPKSSLSGGFARVPLTIMVTDDLLVTPVSSFDSVSYLERMKVPLNDIEEIVVDIGVKEGLSILKASLTSTSALTNGLKQYIDDPMCNLKKPKEEK