AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene89291

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89291.t1 MTR_7g063890 93.651 504 32 0 1 504 1 504 0.0 913
MS.gene89291.t1 MTR_7g063900 73.006 489 129 3 19 505 2 489 0.0 692
MS.gene89291.t1 MTR_7g063840 57.347 490 190 10 19 505 1 474 6.65e-174 498
MS.gene89291.t1 MTR_7g062280 52.610 498 206 9 25 505 8 492 1.68e-161 467
MS.gene89291.t1 MTR_7g063660 54.752 484 204 9 25 505 7 478 5.08e-161 466
MS.gene89291.t1 MTR_7g063880 55.052 485 186 11 24 502 8 466 1.08e-160 464
MS.gene89291.t1 MTR_7g062300 54.262 481 194 12 25 497 10 472 1.74e-158 459
MS.gene89291.t1 MTR_7g063820 56.827 498 178 14 25 505 8 485 3.72e-157 456
MS.gene89291.t1 MTR_7g063830 52.664 488 174 11 19 499 2 439 1.10e-151 441
MS.gene89291.t1 MTR_7g063920 52.156 487 173 10 23 505 7 437 2.14e-148 432
MS.gene89291.t1 MTR_3g007740 49.493 493 187 12 19 499 1 443 2.45e-128 381
MS.gene89291.t1 MTR_7g063670 46.653 493 204 12 25 505 13 458 5.93e-119 357
MS.gene89291.t1 MTR_7g066570 42.455 497 241 12 26 502 13 484 5.22e-109 335
MS.gene89291.t1 MTR_7g058710 39.567 508 257 11 20 505 5 484 1.27e-102 316
MS.gene89291.t1 MTR_7g066260 42.041 490 226 14 26 498 14 462 7.52e-100 310
MS.gene89291.t1 MTR_3g065200 42.424 462 207 12 27 485 3 408 3.99e-93 291
MS.gene89291.t1 MTR_7g012680 40.000 515 236 15 1 505 1 452 5.55e-93 290
MS.gene89291.t1 MTR_7g066340 38.821 492 233 14 26 498 11 453 1.03e-91 288
MS.gene89291.t1 MTR_7g066410 37.670 515 272 11 25 499 8 513 2.09e-91 288
MS.gene89291.t1 MTR_7g066410 39.130 92 51 1 261 347 3 94 2.51e-12 69.3
MS.gene89291.t1 MTR_7g066430 39.059 489 274 11 27 498 4 485 7.61e-89 281
MS.gene89291.t1 MTR_7g066430 26.609 233 152 6 23 242 253 479 4.61e-15 78.2
MS.gene89291.t1 MTR_7g066350 37.854 494 246 10 13 494 1 445 1.66e-88 279
MS.gene89291.t1 MTR_4g019310 36.436 505 278 14 21 498 2 490 1.05e-82 265
MS.gene89291.t1 MTR_7g066290 38.571 490 214 11 26 498 14 433 1.24e-82 263
MS.gene89291.t1 MTR_1g041315 35.331 484 241 10 26 482 13 451 3.99e-80 258
MS.gene89291.t1 MTR_7g066580 37.552 482 244 14 33 498 1 441 1.61e-79 255
MS.gene89291.t1 MTR_7g066580 27.419 248 139 10 21 243 209 440 5.34e-13 71.2
MS.gene89291.t1 MTR_7g066360 38.353 498 237 12 12 495 5 446 6.77e-78 252
MS.gene89291.t1 MTR_7g066400 35.670 485 232 12 27 494 12 433 6.75e-75 243
MS.gene89291.t1 MTR_7g066400 25.551 227 142 7 18 242 230 431 5.55e-15 77.4
MS.gene89291.t1 MTR_7g063720 51.923 260 95 6 248 505 2 233 5.00e-74 234
MS.gene89291.t1 MTR_7g063720 29.358 218 132 7 27 242 23 220 2.74e-18 84.7
MS.gene89291.t1 MTR_1g014060 34.958 472 208 11 40 505 13 391 1.93e-73 238
MS.gene89291.t1 MTR_7g066480 42.210 353 170 11 26 360 15 351 2.68e-70 231
MS.gene89291.t1 MTR_2g029400 33.747 483 230 10 12 487 5 404 1.99e-67 223
MS.gene89291.t1 MTR_7g066310 34.526 475 212 12 26 498 6 383 3.08e-67 222
MS.gene89291.t1 MTR_7g066490 41.337 329 163 6 21 339 12 320 2.34e-65 217
MS.gene89291.t1 MTR_4g017830 32.563 519 284 18 28 504 13 507 5.52e-65 219
MS.gene89291.t1 MTR_4g017440 32.427 515 297 15 21 498 2 502 5.12e-64 216
MS.gene89291.t1 MTR_7g058700 39.118 340 154 7 39 355 531 840 2.42e-60 214
MS.gene89291.t1 MTR_7g058700 36.620 142 76 2 378 505 787 928 9.61e-12 68.2
MS.gene89291.t1 MTR_4g017410 30.443 519 299 13 19 504 1 490 1.21e-59 205
MS.gene89291.t1 MTR_7g063850 42.532 308 153 8 198 504 4 288 5.74e-58 194
MS.gene89291.t1 MTR_4g017610 30.972 494 278 16 30 494 16 475 9.07e-58 199
MS.gene89291.t1 MTR_4g019340 31.765 510 278 16 16 488 27 503 3.70e-56 195
MS.gene89291.t1 MTR_4g017470 30.994 513 269 13 28 504 13 476 8.38e-56 194
MS.gene89291.t1 MTR_4g017470 25.610 246 150 7 21 241 226 463 5.02e-11 65.5
MS.gene89291.t1 MTR_7g063690 42.403 283 94 8 19 295 3 222 1.96e-52 178
MS.gene89291.t1 MTR_7g062270 52.222 180 80 4 19 194 1 178 3.05e-51 179
MS.gene89291.t1 MTR_7g062270 36.145 83 48 1 269 346 11 93 9.86e-11 63.9
MS.gene89291.t1 MTR_7g100420 40.367 327 171 9 171 494 88 393 5.41e-51 179
MS.gene89291.t1 MTR_7g100420 68.627 51 16 0 20 70 32 82 1.69e-13 72.8
MS.gene89291.t1 MTR_7g066280 32.847 411 237 12 106 498 1 390 1.88e-47 170
MS.gene89291.t1 MTR_8g023240 27.459 488 310 15 18 492 27 483 7.30e-45 166
MS.gene89291.t1 MTR_4g017550 30.081 492 282 18 41 495 4 470 3.81e-43 159
MS.gene89291.t1 MTR_4g017550 29.098 244 136 8 19 241 239 466 5.17e-14 74.7
MS.gene89291.t1 MTR_7g066680 37.097 310 143 8 225 494 37 334 1.04e-39 147
MS.gene89291.t1 MTR_7g066680 26.455 189 120 6 27 205 86 265 1.93e-12 68.9
MS.gene89291.t1 MTR_8g445860 30.472 233 144 6 27 248 13 238 7.48e-26 106
MS.gene89291.t1 MTR_8g445860 30.568 229 144 5 268 491 13 231 2.98e-19 87.4
MS.gene89291.t1 MTR_1g115440 29.508 244 144 6 20 247 7 238 3.29e-21 93.2
MS.gene89291.t1 MTR_1g115440 28.319 226 158 3 268 492 11 233 5.31e-17 80.9
MS.gene89291.t1 MTR_0150s0010 28.571 245 148 6 20 247 3 237 4.92e-21 92.4
MS.gene89291.t1 MTR_0150s0010 30.000 230 147 6 268 491 10 231 2.52e-18 84.7
MS.gene89291.t1 MTR_7g063760 56.164 73 31 1 434 505 2 74 8.74e-21 86.7
MS.gene89291.t1 MTR_2g067310 32.558 215 93 7 8 208 14 190 7.84e-19 86.3
MS.gene89291.t1 MTR_1g115455 27.755 245 150 7 19 248 1 233 5.98e-17 80.5
MS.gene89291.t1 MTR_1g115455 26.201 229 155 6 268 492 9 227 2.76e-13 69.7
MS.gene89291.t1 MTR_7g063870 61.111 54 21 0 24 77 28 81 6.91e-14 72.0
MS.gene89291.t1 MTR_7g063870 54.688 64 28 1 170 232 94 157 3.60e-12 67.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene89291.t1 AT3G09140 32.703 529 273 13 19 499 1 494 2.34e-65 220
MS.gene89291.t1 AT5G01120 33.676 487 288 13 30 494 12 485 7.74e-61 208
MS.gene89291.t1 AT5G01120 24.800 250 168 7 1 241 244 482 2.38e-12 69.7
MS.gene89291.t1 AT3G09140 31.059 557 273 14 19 499 1 522 5.17e-60 206
MS.gene89291.t1 AT5G01150 31.474 502 299 10 19 498 1 479 3.89e-57 198
MS.gene89291.t1 AT5G43240 32.927 492 289 11 30 494 12 489 1.20e-54 191
MS.gene89291.t1 AT5G43240 32.927 492 289 11 30 494 12 489 1.20e-54 191
MS.gene89291.t1 AT5G43240 32.927 492 289 11 30 494 12 489 1.20e-54 191
MS.gene89291.t1 AT5G01130 29.697 495 282 10 19 498 1 444 3.55e-51 181
MS.gene89291.t1 AT5G01140 28.889 495 293 13 19 498 1 451 6.93e-50 178
MS.gene89291.t1 AT3G09110 34.936 312 186 4 30 329 12 318 1.61e-48 171
MS.gene89291.t1 AT3G09120 34.405 311 182 7 26 319 5 310 2.45e-41 150
MS.gene89291.t1 AT3G09120 27.600 250 160 7 263 499 1 242 9.61e-14 72.8
MS.gene89291.t1 AT5G37320 27.930 512 288 18 27 499 11 480 4.36e-35 137
MS.gene89291.t1 AT5G43240 29.464 336 211 8 173 494 22 345 1.32e-18 87.8

Find 74 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTTCTTGACACATTT+TGG 0.067658 7.1:+37700308 MS.gene89291:CDS
ATCACTTGCCTTAGGTGATT+TGG 0.194221 7.1:-37701131 None:intergenic
CGCATTATTATTACTATAAT+AGG 0.196846 7.1:+37700987 MS.gene89291:CDS
AATACTTGGTCTTCTGTATT+AGG 0.224721 7.1:-37699876 None:intergenic
CACTTGTTAACCAATGTTAA+AGG 0.225881 7.1:+37701486 MS.gene89291:CDS
CTAAGCATGCTTCAGAATTC+TGG 0.274857 7.1:+37700410 MS.gene89291:CDS
GGCGGAGTTGTTCGCGTATT+AGG 0.307927 7.1:+37700797 MS.gene89291:CDS
CTATAATAGGTTCCTAGGTT+TGG 0.323823 7.1:+37701000 MS.gene89291:CDS
ATTAGGAGGGAATTGCTCTT+TGG 0.327353 7.1:+37700814 MS.gene89291:CDS
CAAAGTACTTCATATGTTGC+AGG 0.327554 7.1:+37700204 MS.gene89291:CDS
TCACTTGCCTTAGGTGATTT+GGG 0.328981 7.1:-37701130 None:intergenic
TATAATAGGTTCCTAGGTTT+GGG 0.331462 7.1:+37701001 MS.gene89291:CDS
CAACATATGAAGTACTTTGT+AGG 0.355917 7.1:-37700200 None:intergenic
TTCAGACAACCAATGGTAAC+TGG 0.356771 7.1:-37700041 None:intergenic
TCACCTAAGGCAAGTGATAA+TGG 0.365777 7.1:+37701136 MS.gene89291:CDS
GTTACAGATGATTTGGTCAT+TGG 0.373912 7.1:+37701193 MS.gene89291:CDS
TTCAGCAATTAAGACTTTGT+TGG 0.376814 7.1:-37699925 None:intergenic
CCAGTAGTTTCAACAATACT+TGG 0.378986 7.1:-37699890 None:intergenic
ACTTGTTAACCAATGTTAAA+GGG 0.387534 7.1:+37701487 MS.gene89291:CDS
GTATGTGGTTACAGATGATT+TGG 0.389987 7.1:+37701186 MS.gene89291:CDS
TATTACTATAATAGGTTCCT+AGG 0.390455 7.1:+37700995 MS.gene89291:CDS
TTAGGAGGGAATTGCTCTTT+GGG 0.394467 7.1:+37700815 MS.gene89291:CDS
ACACTTGACCTCTGGATCAA+TGG 0.409415 7.1:-37700632 None:intergenic
AGCTTCTTCACATTGCCATT+AGG 0.414279 7.1:+37699978 MS.gene89291:CDS
GGGAAAGGATTTGTTAAAGA+AGG 0.419018 7.1:+37700329 MS.gene89291:CDS
AGTCTTGCAATATTTCCTAA+TGG 0.422679 7.1:-37699993 None:intergenic
AATCTTCAGAAGAGTTCTTC+GGG 0.424237 7.1:-37700139 None:intergenic
TAATCTTCAGAAGAGTTCTT+CGG 0.426593 7.1:-37700140 None:intergenic
ATTTGGGATTATTACTAACT+AGG 0.430912 7.1:-37701114 None:intergenic
GCTTGTCACCATCGGCATAA+AGG 0.431164 7.1:+37701288 MS.gene89291:CDS
CAAATCTGTCAGAGTAGACT+TGG 0.447463 7.1:-37700594 None:intergenic
AAAGTCTTAATTGCTGAAGC+AGG 0.453365 7.1:+37699930 MS.gene89291:CDS
TGACAAAAGAAGCAAAGAAA+AGG 0.458594 7.1:+37700891 MS.gene89291:CDS
TCATTTCTCCCCTTTAACAT+TGG 0.461782 7.1:-37701496 None:intergenic
CCAAGTATTGTTGAAACTAC+TGG 0.477139 7.1:+37699890 MS.gene89291:CDS
TCGTCGTTTGCTCTAACAAA+TGG 0.479714 7.1:+37701456 MS.gene89291:CDS
AGCCCTGTGAATTCTGAGTT+CGG 0.486240 7.1:-37700389 None:intergenic
TCTTACCTCCTTTATGCCGA+TGG 0.486591 7.1:-37701296 None:intergenic
TGTCTGAACAAACTTTATCA+AGG 0.490886 7.1:+37700056 MS.gene89291:CDS
ACGCGAACAACTCCGCCTAA+AGG 0.493181 7.1:-37700791 None:intergenic
AAGAGAAAACACTTGACCTC+TGG 0.496645 7.1:-37700640 None:intergenic
TCTCAACGTCACTAAGGAAA+AGG 0.499259 7.1:+37700466 MS.gene89291:CDS
TAACCATTATCACTTGCCTT+AGG 0.502444 7.1:-37701139 None:intergenic
GGAGTTGTTCGCGTATTAGG+AGG 0.540093 7.1:+37700800 MS.gene89291:CDS
GGCAAGATATTGTTTGCTCA+AGG 0.542741 7.1:+37700725 MS.gene89291:CDS
TGTTGATCCACACTTGGCAC+CGG 0.545388 7.1:+37700916 MS.gene89291:CDS
ATGCCGAACTCAGAATTCAC+AGG 0.548559 7.1:+37700386 MS.gene89291:CDS
AATGACTCTCAACGTCACTA+AGG 0.552198 7.1:+37700460 MS.gene89291:CDS
AAGAGGGGACCAGTTACCAT+TGG 0.557514 7.1:+37700032 MS.gene89291:CDS
TTGCTTAATTTGTTGAACTC+CGG 0.560839 7.1:-37700935 None:intergenic
CTTGTTAACCAATGTTAAAG+GGG 0.566746 7.1:+37701488 MS.gene89291:CDS
AAGAAAGTTGAACGACTCAA+AGG 0.567556 7.1:-37700296 None:intergenic
AAGTTTGTTCAGACAACCAA+TGG 0.569049 7.1:-37700048 None:intergenic
TCGTAGAGAAGGACTCAAAG+AGG 0.569922 7.1:+37700015 MS.gene89291:CDS
AGTTCCTCTTCATGATGTGA+AGG 0.570821 7.1:+37701261 MS.gene89291:CDS
GAGTTGTTCGCGTATTAGGA+GGG 0.571871 7.1:+37700801 MS.gene89291:CDS
TAATAATCCCAAATCACCTA+AGG 0.572826 7.1:+37701123 MS.gene89291:CDS
TTTCTCACATTTCCTTTAGG+CGG 0.573985 7.1:+37700779 MS.gene89291:CDS
GCAGTGTCTGAGCATATTGA+AGG 0.585516 7.1:+37701422 MS.gene89291:intron
TTGAACTCCGGTGCCAAGTG+TGG 0.586212 7.1:-37700923 None:intergenic
TATTGCAAGACTCGTAGAGA+AGG 0.586657 7.1:+37700004 MS.gene89291:CDS
AAGGAAAAGCTTGTCACCAT+CGG 0.587555 7.1:+37701280 MS.gene89291:CDS
AAGTCTTAATTGCTGAAGCA+GGG 0.590272 7.1:+37699931 MS.gene89291:CDS
CGTAGAGAAGGACTCAAAGA+GGG 0.590650 7.1:+37700016 MS.gene89291:CDS
AATGGTTATGTAAAAGCAGA+GGG 0.594931 7.1:+37701154 MS.gene89291:CDS
AAAAGAAACCATTGATCCAG+AGG 0.604981 7.1:+37700624 MS.gene89291:CDS
AGAGGGACTCAGAAAGTATG+TGG 0.607969 7.1:+37701171 MS.gene89291:CDS
AAGGCTTGTTGATCCACACT+TGG 0.608575 7.1:+37700910 MS.gene89291:CDS
TAATGCTATTACCCAAACCT+AGG 0.609121 7.1:-37701012 None:intergenic
TTATGTGAGAACTGATAGAG+AGG 0.644156 7.1:+37701087 MS.gene89291:CDS
TAATGGTTATGTAAAAGCAG+AGG 0.652935 7.1:+37701153 MS.gene89291:CDS
TGTCACCATCGGCATAAAGG+AGG 0.656472 7.1:+37701291 MS.gene89291:CDS
TGCCGAACTCAGAATTCACA+GGG 0.676332 7.1:+37700387 MS.gene89291:CDS
GTAGAGAAGGACTCAAAGAG+GGG 0.681398 7.1:+37700017 MS.gene89291:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAAAAATAGATTTGAAAT+TGG - chr7.1:37701229-37701248 None:intergenic 10.0%
!!! ATGAATTGATGATAAAAATT+AGG - chr7.1:37700517-37700536 None:intergenic 15.0%
!! AAAAAACACAAGTTCAATAA+CGG + chr7.1:37700436-37700455 MS.gene89291:CDS 20.0%
!! CGCATTATTATTACTATAAT+AGG + chr7.1:37700987-37701006 MS.gene89291:CDS 20.0%
!!! ATTTTCGAAAAACTAACTTA+AGG - chr7.1:37700700-37700719 None:intergenic 20.0%
!!! GATTGATTAATATTTTGTAC+AGG + chr7.1:37700541-37700560 MS.gene89291:intron 20.0%
!!! TTAGTTTTTCGAAAATCAAA+TGG + chr7.1:37700704-37700723 MS.gene89291:CDS 20.0%
! TATTAAAAAAGAGGAGCAAA+AGG + chr7.1:37699821-37699840 MS.gene89291:CDS 25.0%
! TATTACTATAATAGGTTCCT+AGG + chr7.1:37700995-37701014 MS.gene89291:CDS 25.0%
!! AAAGGTTGCTATTAAAAAAG+AGG + chr7.1:37699839-37699858 MS.gene89291:CDS 25.0%
!! ACTTGTTAACCAATGTTAAA+GGG + chr7.1:37701487-37701506 MS.gene89291:CDS 25.0%
!! ATTTGGGATTATTACTAACT+AGG - chr7.1:37701117-37701136 None:intergenic 25.0%
AAATTAAAAAACACGACGCA+TGG - chr7.1:37701353-37701372 None:intergenic 30.0%
AATGGTTATGTAAAAGCAGA+GGG + chr7.1:37701154-37701173 MS.gene89291:CDS 30.0%
AATTAAAAAACACGACGCAT+GGG - chr7.1:37701352-37701371 None:intergenic 30.0%
ACAGACAAAAATTGTGTGTA+TGG + chr7.1:37700269-37700288 MS.gene89291:CDS 30.0%
AGTCTTGCAATATTTCCTAA+TGG - chr7.1:37699996-37700015 None:intergenic 30.0%
CTTGTTAACCAATGTTAAAG+GGG + chr7.1:37701488-37701507 MS.gene89291:CDS 30.0%
TAATAATCCCAAATCACCTA+AGG + chr7.1:37701123-37701142 MS.gene89291:CDS 30.0%
TAATCTTCAGAAGAGTTCTT+CGG - chr7.1:37700143-37700162 None:intergenic 30.0%
TAATGGTTATGTAAAAGCAG+AGG + chr7.1:37701153-37701172 MS.gene89291:CDS 30.0%
TATAATAGGTTCCTAGGTTT+GGG + chr7.1:37701001-37701020 MS.gene89291:CDS 30.0%
TATTAAAAAAGAGGAGCAAG+TGG + chr7.1:37699848-37699867 MS.gene89291:CDS 30.0%
TGACAAAAGAAGCAAAGAAA+AGG + chr7.1:37700891-37700910 MS.gene89291:CDS 30.0%
TGTCTGAACAAACTTTATCA+AGG + chr7.1:37700056-37700075 MS.gene89291:CDS 30.0%
TTCAGCAATTAAGACTTTGT+TGG - chr7.1:37699928-37699947 None:intergenic 30.0%
! AATACTTGGTCTTCTGTATT+AGG - chr7.1:37699879-37699898 None:intergenic 30.0%
! AGTTTTCTCACATTTCCTTT+AGG + chr7.1:37700776-37700795 MS.gene89291:CDS 30.0%
! CAACATATGAAGTACTTTGT+AGG - chr7.1:37700203-37700222 None:intergenic 30.0%
! CAACTTTCTTGACACATTTT+GGG + chr7.1:37700309-37700328 MS.gene89291:CDS 30.0%
! CACTTGTTAACCAATGTTAA+AGG + chr7.1:37701486-37701505 MS.gene89291:CDS 30.0%
! TCAACTTTCTTGACACATTT+TGG + chr7.1:37700308-37700327 MS.gene89291:CDS 30.0%
!! TTGCTTAATTTGTTGAACTC+CGG - chr7.1:37700938-37700957 None:intergenic 30.0%
AAAAGAAACCATTGATCCAG+AGG + chr7.1:37700624-37700643 MS.gene89291:CDS 35.0%
AAAGTCTTAATTGCTGAAGC+AGG + chr7.1:37699930-37699949 MS.gene89291:CDS 35.0%
AAGAAAGTTGAACGACTCAA+AGG - chr7.1:37700299-37700318 None:intergenic 35.0%
AAGTCTTAATTGCTGAAGCA+GGG + chr7.1:37699931-37699950 MS.gene89291:CDS 35.0%
AATCTTCAGAAGAGTTCTTC+GGG - chr7.1:37700142-37700161 None:intergenic 35.0%
ATTAAAAAACACGACGCATG+GGG - chr7.1:37701351-37701370 None:intergenic 35.0%
CCAGTAGTTTCAACAATACT+TGG - chr7.1:37699893-37699912 None:intergenic 35.0%
CTATAATAGGTTCCTAGGTT+TGG + chr7.1:37701000-37701019 MS.gene89291:CDS 35.0%
GTATGTGGTTACAGATGATT+TGG + chr7.1:37701186-37701205 MS.gene89291:CDS 35.0%
TAACCATTATCACTTGCCTT+AGG - chr7.1:37701142-37701161 None:intergenic 35.0%
TAATGCTATTACCCAAACCT+AGG - chr7.1:37701015-37701034 None:intergenic 35.0%
TCATTTCTCCCCTTTAACAT+TGG - chr7.1:37701499-37701518 None:intergenic 35.0%
TTATGTGAGAACTGATAGAG+AGG + chr7.1:37701087-37701106 MS.gene89291:CDS 35.0%
TTTCTCACATTTCCTTTAGG+CGG + chr7.1:37700779-37700798 MS.gene89291:CDS 35.0%
! AAGTTTGTTCAGACAACCAA+TGG - chr7.1:37700051-37700070 None:intergenic 35.0%
! CAAAGTACTTCATATGTTGC+AGG + chr7.1:37700204-37700223 MS.gene89291:CDS 35.0%
! CCAAGTATTGTTGAAACTAC+TGG + chr7.1:37699890-37699909 MS.gene89291:CDS 35.0%
! TTTTCCTTCACATCATGAAG+AGG - chr7.1:37701268-37701287 None:intergenic 35.0%
!! GGGAAAGGATTTGTTAAAGA+AGG + chr7.1:37700329-37700348 MS.gene89291:CDS 35.0%
!! GTTACAGATGATTTGGTCAT+TGG + chr7.1:37701193-37701212 MS.gene89291:CDS 35.0%
!! TTCTTGACACATTTTGGGAA+AGG + chr7.1:37700314-37700333 MS.gene89291:CDS 35.0%
AAGAGAAAACACTTGACCTC+TGG - chr7.1:37700643-37700662 None:intergenic 40.0%
AAGGAAAAGCTTGTCACCAT+CGG + chr7.1:37701280-37701299 MS.gene89291:CDS 40.0%
AATGACTCTCAACGTCACTA+AGG + chr7.1:37700460-37700479 MS.gene89291:CDS 40.0%
AGCTTCTTCACATTGCCATT+AGG + chr7.1:37699978-37699997 MS.gene89291:CDS 40.0%
AGTTCCTCTTCATGATGTGA+AGG + chr7.1:37701261-37701280 MS.gene89291:CDS 40.0%
ATCACTTGCCTTAGGTGATT+TGG - chr7.1:37701134-37701153 None:intergenic 40.0%
ATTAGGAGGGAATTGCTCTT+TGG + chr7.1:37700814-37700833 MS.gene89291:CDS 40.0%
CAAATCTGTCAGAGTAGACT+TGG - chr7.1:37700597-37700616 None:intergenic 40.0%
CTAAGCATGCTTCAGAATTC+TGG + chr7.1:37700410-37700429 MS.gene89291:CDS 40.0%
GGCAAGATATTGTTTGCTCA+AGG + chr7.1:37700725-37700744 MS.gene89291:CDS 40.0%
TATTGCAAGACTCGTAGAGA+AGG + chr7.1:37700004-37700023 MS.gene89291:CDS 40.0%
TCACCTAAGGCAAGTGATAA+TGG + chr7.1:37701136-37701155 MS.gene89291:CDS 40.0%
TCACTTGCCTTAGGTGATTT+GGG - chr7.1:37701133-37701152 None:intergenic 40.0%
TCGTCGTTTGCTCTAACAAA+TGG + chr7.1:37701456-37701475 MS.gene89291:CDS 40.0%
TCTCAACGTCACTAAGGAAA+AGG + chr7.1:37700466-37700485 MS.gene89291:CDS 40.0%
TTAGGAGGGAATTGCTCTTT+GGG + chr7.1:37700815-37700834 MS.gene89291:CDS 40.0%
TTCAGACAACCAATGGTAAC+TGG - chr7.1:37700044-37700063 None:intergenic 40.0%
ACACTTGACCTCTGGATCAA+TGG - chr7.1:37700635-37700654 None:intergenic 45.0%
AGCCCTGTGAATTCTGAGTT+CGG - chr7.1:37700392-37700411 None:intergenic 45.0%
ATGCCGAACTCAGAATTCAC+AGG + chr7.1:37700386-37700405 MS.gene89291:CDS 45.0%
CGTAGAGAAGGACTCAAAGA+GGG + chr7.1:37700016-37700035 MS.gene89291:CDS 45.0%
GAGTTGTTCGCGTATTAGGA+GGG + chr7.1:37700801-37700820 MS.gene89291:CDS 45.0%
GCAGTGTCTGAGCATATTGA+AGG + chr7.1:37701422-37701441 MS.gene89291:intron 45.0%
GTAGAGAAGGACTCAAAGAG+GGG + chr7.1:37700017-37700036 MS.gene89291:CDS 45.0%
TCGTAGAGAAGGACTCAAAG+AGG + chr7.1:37700015-37700034 MS.gene89291:CDS 45.0%
TCTTACCTCCTTTATGCCGA+TGG - chr7.1:37701299-37701318 None:intergenic 45.0%
TGCCGAACTCAGAATTCACA+GGG + chr7.1:37700387-37700406 MS.gene89291:CDS 45.0%
! AGAGGGACTCAGAAAGTATG+TGG + chr7.1:37701171-37701190 MS.gene89291:CDS 45.0%
! TGCGCACGTAGCTTTTGAAT+AGG - chr7.1:37700971-37700990 None:intergenic 45.0%
!! AAGGCTTGTTGATCCACACT+TGG + chr7.1:37700910-37700929 MS.gene89291:CDS 45.0%
AAGAGGGGACCAGTTACCAT+TGG + chr7.1:37700032-37700051 MS.gene89291:CDS 50.0%
GCTTGTCACCATCGGCATAA+AGG + chr7.1:37701288-37701307 MS.gene89291:CDS 50.0%
GGAGTTGTTCGCGTATTAGG+AGG + chr7.1:37700800-37700819 MS.gene89291:CDS 50.0%
TGTCACCATCGGCATAAAGG+AGG + chr7.1:37701291-37701310 MS.gene89291:CDS 50.0%
TGTTGATCCACACTTGGCAC+CGG + chr7.1:37700916-37700935 MS.gene89291:CDS 50.0%
ACGCGAACAACTCCGCCTAA+AGG - chr7.1:37700794-37700813 None:intergenic 55.0%
GGCGGAGTTGTTCGCGTATT+AGG + chr7.1:37700797-37700816 MS.gene89291:CDS 55.0%
! TTGAACTCCGGTGCCAAGTG+TGG - chr7.1:37700926-37700945 None:intergenic 55.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 37699813 37701518 37699813 ID=MS.gene89291
chr7.1 mRNA 37699813 37701518 37699813 ID=MS.gene89291.t1;Parent=MS.gene89291
chr7.1 exon 37699813 37700487 37699813 ID=MS.gene89291.t1.exon1;Parent=MS.gene89291.t1
chr7.1 CDS 37699813 37700487 37699813 ID=cds.MS.gene89291.t1;Parent=MS.gene89291.t1
chr7.1 exon 37700563 37701312 37700563 ID=MS.gene89291.t1.exon2;Parent=MS.gene89291.t1
chr7.1 CDS 37700563 37701312 37700563 ID=cds.MS.gene89291.t1;Parent=MS.gene89291.t1
chr7.1 exon 37701426 37701518 37701426 ID=MS.gene89291.t1.exon3;Parent=MS.gene89291.t1
chr7.1 CDS 37701426 37701518 37701426 ID=cds.MS.gene89291.t1;Parent=MS.gene89291.t1
Gene Sequence

>MS.gene89291

ATGGCTGCTATTAAAAAAGAGGAGCAAAAGGTTGCTATTAAAAAAGAGGAGCAAGTGGCTGCTCCTAATACAGAAGACCAAGTATTGTTGAAACTACTGGTGAACAAAGAGACCAACAAAGTCTTAATTGCTGAAGCAGGGAAAGAGTTTGTTGATGTTCTATTTAGCTTCTTCACATTGCCATTAGGAAATATTGCAAGACTCGTAGAGAAGGACTCAAAGAGGGGACCAGTTACCATTGGTTGTCTGAACAAACTTTATCAAGGTGTGATAGATCTCGATGAAGAGTGTATGCAGACTGAGATAAGCAAAGAAATGTTATTGCACCCGAAGAACTCTTCTGAAGATTATTGCATCAATCTTAAACTTAACATTGATGACATTAAGCCTACAAAGTACTTCATATGTTGCAGGTTTGATTGTCAATGCATACAACAACATAATTTATACACTTCTACAGACAAAAATTGTGTGTATGGAAAACCTTTGAGTCGTTCAACTTTCTTGACACATTTTGGGAAAGGATTTGTTAAAGAAGGTGCAGCTTTTGTTATTACTGATGATCTAATTGTCATGCCGAACTCAGAATTCACAGGGCTAAGCATGCTTCAGAATTCTGGAATAAAAAACACAAGTTCAATAACGGAAATGACTCTCAACGTCACTAAGGAAAAGGTTATTATAAATTTATAGCTGTGTTTCCTAATTTTTATCATCAATTCATTTGCGATTGATTAATATTTTGTACAGGTACTCGATCTTTTAAAGTGTGCATTGCTCTCCAAGTCTACTCTGACAGATTTGTTTCTAAAAAAGAAACCATTGATCCAGAGGTCAAGTGTTTTCTCTTGTGATGCTGTCATCAAGAAAAATATCAAGATCAGCCTTAAGTTAGTTTTTCGAAAATCAAATGGCAAGATATTGTTTGCTCAAGGAGAAAAAGATTTTGTAGACTTACTTTTAAGTTTTCTCACATTTCCTTTAGGCGGAGTTGTTCGCGTATTAGGAGGGAATTGCTCTTTGGGTAACATTGATTTTCTGTACAAGAGCATAGTTGATTTGCATGCAAGCACATTTTTGACAAAAGAAGCAAAGAAAAGGCTTGTTGATCCACACTTGGCACCGGAGTTCAACAAATTAAGCAAGCAGATATTACCTATTCAAAAGCTACGTGCGCATTATTATTACTATAATAGGTTCCTAGGTTTGGGTAATAGCATTATTCAGAATCAATTTTTCATTAGTGATGAAAATACGAGCAATGAATATGCAGATTATGTGAGAACTGATAGAGAGGTGAACCTAGTTAGTAATAATCCCAAATCACCTAAGGCAAGTGATAATGGTTATGTAAAAGCAGAGGGACTCAGAAAGTATGTGGTTACAGATGATTTGGTCATTGGAACATCTTCTCCAATTTCAAATCTATTTTTAATCAACAATTTCAAAGTTCCTCTTCATGATGTGAAGGAAAAGCTTGTCACCATCGGCATAAAGGAGGTAAGAAATGACATAATTTATACATATATATTTGTCCCCATGCGTCGTGTTTTTTAATTTGCTAGATTGATTGAAGATGCTATTGCTAATTTTACATAATTGTATTGTTGCAGTGTCTGAGCATATTGAAGGCATCTTTGTCATCGTCGTTTGCTCTAACAAATGGTCTTCGTCACTTGTTAACCAATGTTAAAGGGGAGAAATGA
Protein sequence

>MS.gene89291.t1

MAAIKKEEQKVAIKKEEQVAAPNTEDQVLLKLLVNKETNKVLIAEAGKEFVDVLFSFFTLPLGNIARLVEKDSKRGPVTIGCLNKLYQGVIDLDEECMQTEISKEMLLHPKNSSEDYCINLKLNIDDIKPTKYFICCRFDCQCIQQHNLYTSTDKNCVYGKPLSRSTFLTHFGKGFVKEGAAFVITDDLIVMPNSEFTGLSMLQNSGIKNTSSITEMTLNVTKEKVLDLLKCALLSKSTLTDLFLKKKPLIQRSSVFSCDAVIKKNIKISLKLVFRKSNGKILFAQGEKDFVDLLLSFLTFPLGGVVRVLGGNCSLGNIDFLYKSIVDLHASTFLTKEAKKRLVDPHLAPEFNKLSKQILPIQKLRAHYYYYNRFLGLGNSIIQNQFFISDENTSNEYADYVRTDREVNLVSNNPKSPKASDNGYVKAEGLRKYVVTDDLVIGTSSPISNLFLINNFKVPLHDVKEKLVTIGIKECLSILKASLSSSFALTNGLRHLLTNVKGEK